Bhi03G002044 (gene) Wax gourd

Overview
NameBhi03G002044
Typegene
OrganismBenincasa hispida (Wax gourd)
Description40S ribosomal protein S28
Locationchr3 : 59688899 .. 59690631 (+)
Genome Viewer
Sequences
The following sequences are available for this feature:

Gene sequence (with intron)

Legend: five_prime_UTRexonpolypeptideCDSthree_prime_UTR
Hold the cursor over a type above to highlight its positions in the sequence below.
TTATAAAATAAAAAACGAAATAAAAATAAATTAATAGAAAGGGAAATTATTAGAAACGTAAACCCTAGCCAAGCCAATCCCTACCCCATTGCCGCACAATCTTCTTCATCGTTCTTCTTCCTTGATCTCAGGTTCTCTCTCTGAACTCTTATCTCTCTGCTTCTTGATTTTCTTCAATTTCCTATAAACTTGAGTCTCTTAATTTCTCTGCCTGATTGTGGACGAATTGTTCCAGTTTTCCTACTTTTGTTGCCCTTTAAACGTTCCTTTGATGATTTTGTTTCTCTGATTGAATTCTTACACGACAGAGAGTTTTCAAATAGTAATTGAACTGGAAGCTGATGCACTCTTGCTGTAGGTCTTCGTATTAAGGAGATTTAAAGTTTTTGGGCTTTTATGATTTTTATGAAGTTATTGGAATTATGACTTCCGTTATGCTTTTTGTAATTAGTATCACTGGCTTCTACGCATTAGGTCTTTCGAATTGGGAAGTTGGAACTTTATAAGCGGTACATGGTGATGGATTGTTTGAGGAGGACTAAAAACACTTTTGCTATTGTATAAAGGCTCTTCCCACACATACGTAGGACATGTTTGATAGATATAATTTCCTTTTGTTGTGTTCAAAATCGTTATTTTAGTGTTAAACATGAATATTCCATTAAAGTTGATTTTGAATGGATTAAAATACATGTTTTGGATTGATTTTAATTTTAAAAAGGGGATTTTAACTATTTGAGAATCAATCCCAAACATGCCCATATTGTGTTTGGGAGTGATTTACAAATATTAGTCGTTATTATTATTATTTTCTTTTTGGGAGGATCCACTTTTGAAGCACTTTTGGCTAAAATGATCGTCAAGGAATACTTGAAACAGACCACCTTGGGTTGACCGGTTATTCATAGAAGCCATCGAAAAAATTAAATAGGACTTTAATCGCACTTTTAAGACTGAGTATCGTAGTGATTGTTCAATAAATACTGTTTTCTAAAATGGTTATATTGAAACTAAAATCAATAAGTTTTAAGACATTTCAAAACATACCTTTAAGGAGGATCATTTATGAGACAAGGAAGGTTCAATCTAACTGTAAGATTGTTTTTTATTTTTTGGTTTGTTTGTGTAGGAATGGAATCACAAATCAAACATGCTGTGGTGGTGAAAGTAATGGGTAGAACTGGATCAAGAGGGCAGGTGACTCAAGTGAGAGTCAAGTTTCTTGATGATCAGAATCGTTACATTATGAGGAATGTCAAGGGACCAGTCAGGGAAGGTGATATTCTTACCCTACTCGAGTCTGAGAGGGAAGCTAGAAGGTTGCGGTGATGGAAAATTTTCTGTTGCTGCCATCATATTTTTTTTCCTCTTTTCAAGTGTGGAATTTAGTAACTTGTTTGCTCCAAGACTTTGATTCTGGGGCTGAATGTGTGAACTAGTTGCGTAATTTAATTGAGTTTTGATAATTTGTGGTTTTTTACTTGCTTAATGAATGTGAAGGAATGTTTTTTTGTGTTATTTTTGTCACGTGCATTTTGACTCTGTTTGAGTTGAATGCTAGTTGAAAGGTCATTGAAGTGGATATACTTCAGATTCATATTACAGGCTTGTTTTTTTAATTTTGTTTTAGTTTGTTTGTTTTTGTTTTTTACGAGATGGGACTTGAAGTTGATAGTATAAACATTATGATAGTCAAGCTATGCTCATTTTGGCCTTAGTTTAGATTTGTTGGG

mRNA sequence

TTATAAAATAAAAAACGAAATAAAAATAAATTAATAGAAAGGGAAATTATTAGAAACGTAAACCCTAGCCAAGCCAATCCCTACCCCATTGCCGCACAATCTTCTTCATCGTTCTTCTTCCTTGATCTCAGGAATGGAATCACAAATCAAACATGCTGTGGTGGTGAAAGTAATGGGTAGAACTGGATCAAGAGGGCAGGTGACTCAAGTGAGAGTCAAGTTTCTTGATGATCAGAATCGTTACATTATGAGGAATGTCAAGGGACCAGTCAGGGAAGGTGATATTCTTACCCTACTCGAGTCTGAGAGGGAAGCTAGAAGGTTGCGGTGATGGAAAATTTTCTGTTGCTGCCATCATATTTTTTTTCCTCTTTTCAAGTGTGGAATTTAGTAACTTGTTTGCTCCAAGACTTTGATTCTGGGGCTGAATGTGTGAACTAGTTGCGTAATTTAATTGAGTTTTGATAATTTGTGGTTTTTTACTTGCTTAATGAATGTGAAGGAATGTTTTTTTGTGTTATTTTTGTCACGTGCATTTTGACTCTGTTTGAGTTGAATGCTAGTTGAAAGGTCATTGAAGTGGATATACTTCAGATTCATATTACAGGCTTGTTTTTTTAATTTTGTTTTAGTTTGTTTGTTTTTGTTTTTTACGAGATGGGACTTGAAGTTGATAGTATAAACATTATGATAGTCAAGCTATGCTCATTTTGGCCTTAGTTTAGATTTGTTGGG

Coding sequence (CDS)

ATGGAATCACAAATCAAACATGCTGTGGTGGTGAAAGTAATGGGTAGAACTGGATCAAGAGGGCAGGTGACTCAAGTGAGAGTCAAGTTTCTTGATGATCAGAATCGTTACATTATGAGGAATGTCAAGGGACCAGTCAGGGAAGGTGATATTCTTACCCTACTCGAGTCTGAGAGGGAAGCTAGAAGGTTGCGGTGA

Protein sequence

MESQIKHAVVVKVMGRTGSRGQVTQVRVKFLDDQNRYIMRNVKGPVREGDILTLLESEREARRLR
Homology
[Close]
BLAST of Bhi03G002044 vs. Swiss-Prot
Match: sp|P46302|RS28_MAIZE (40S ribosomal protein S28 OS=Zea mays OX=4577 GN=RPS28 PE=3 SV=1)

HSP 1 Score: 114.0 bits (284), Expect = 6.2e-25
Identity = 59/65 (90.77%), Postives = 62/65 (95.38%), Query Frame = 0 

Query: 1  MESQIKHAVVVKVMGRTGSRGQVTQVRVKFLDDQNRYIMRNVKGPVREGDILTLLESERE 60
          M++Q+K AVVVKVMGRTGSRGQVTQVRVKFLDDQNR IMRNVKGPV EGDILTLLESERE
Sbjct: 1  MDTQVKLAVVVKVMGRTGSRGQVTQVRVKFLDDQNRLIMRNVKGPVCEGDILTLLESERE 60

Query: 61 ARRLR 66
          ARRLR
Sbjct: 61 ARRLR 65

[Close]
BLAST of Bhi03G002044 vs. Swiss-Prot
Match: sp|Q9SR73|RS281_ARATH (40S ribosomal protein S28-1 OS=Arabidopsis thaliana OX=3702 GN=RPS28A PE=3 SV=1)

HSP 1 Score: 113.2 bits (282), Expect = 1.1e-24
Identity = 60/65 (92.31%), Postives = 62/65 (95.38%), Query Frame = 0 

Query: 1  MESQIKHAVVVKVMGRTGSRGQVTQVRVKFLDDQNRYIMRNVKGPVREGDILTLLESERE 60
          M+SQIKHAVVVKVMGRTGSRGQVTQVRVKF  D +RYIMRNVKGPVREGDILTLLESERE
Sbjct: 1  MDSQIKHAVVVKVMGRTGSRGQVTQVRVKF-TDSDRYIMRNVKGPVREGDILTLLESERE 60

Query: 61 ARRLR 66
          ARRLR
Sbjct: 61 ARRLR 64

[Close]
BLAST of Bhi03G002044 vs. Swiss-Prot
Match: sp|P34789|RS282_ARATH (40S ribosomal protein S28-2 OS=Arabidopsis thaliana OX=3702 GN=RPS28C PE=3 SV=1)

HSP 1 Score: 111.3 bits (277), Expect = 4.0e-24
Identity = 58/65 (89.23%), Postives = 62/65 (95.38%), Query Frame = 0 

Query: 1  MESQIKHAVVVKVMGRTGSRGQVTQVRVKFLDDQNRYIMRNVKGPVREGDILTLLESERE 60
          M+SQIKHAVVVKVMGRTGSRGQVTQVRVKF  D +R+IMRNVKGPVREGD+LTLLESERE
Sbjct: 1  MDSQIKHAVVVKVMGRTGSRGQVTQVRVKF-TDSDRFIMRNVKGPVREGDVLTLLESERE 60

Query: 61 ARRLR 66
          ARRLR
Sbjct: 61 ARRLR 64

[Close]
BLAST of Bhi03G002044 vs. Swiss-Prot
Match: sp|Q6PBK3|RS28_DANRE (40S ribosomal protein S28 OS=Danio rerio OX=7955 GN=rps28 PE=3 SV=1)

HSP 1 Score: 97.1 bits (240), Expect = 7.9e-20
Identity = 49/61 (80.33%), Postives = 55/61 (90.16%), Query Frame = 0 

Query: 5  IKHAVVVKVMGRTGSRGQVTQVRVKFLDDQNRYIMRNVKGPVREGDILTLLESEREARRL 64
          IK A V KV+GRTGS+GQ TQVRV+F+DD NR I+RNVKGPVREGD+LTLLESEREARRL
Sbjct: 9  IKLARVTKVLGRTGSQGQCTQVRVEFMDDSNRSIIRNVKGPVREGDVLTLLESEREARRL 68

Query: 65 R 66
          R
Sbjct: 69 R 69

[Close]
BLAST of Bhi03G002044 vs. Swiss-Prot
Match: sp|Q90YP3|RS28_ICTPU (40S ribosomal protein S28 OS=Ictalurus punctatus OX=7998 GN=rps28 PE=3 SV=1)

HSP 1 Score: 97.1 bits (240), Expect = 7.9e-20
Identity = 49/61 (80.33%), Postives = 55/61 (90.16%), Query Frame = 0 

Query: 5  IKHAVVVKVMGRTGSRGQVTQVRVKFLDDQNRYIMRNVKGPVREGDILTLLESEREARRL 64
          IK A V KV+GRTGS+GQ TQVRV+F+DD NR I+RNVKGPVREGD+LTLLESEREARRL
Sbjct: 9  IKLARVTKVLGRTGSQGQCTQVRVEFMDDSNRSIIRNVKGPVREGDVLTLLESEREARRL 68

Query: 65 R 66
          R
Sbjct: 69 R 69

[Close]
BLAST of Bhi03G002044 vs. TAIR10
Match: AT3G10090.1 (Nucleic acid-binding, OB-fold-like protein)

HSP 1 Score: 113.2 bits (282), Expect = 5.9e-26
Identity = 60/65 (92.31%), Postives = 62/65 (95.38%), Query Frame = 0 

Query: 1  MESQIKHAVVVKVMGRTGSRGQVTQVRVKFLDDQNRYIMRNVKGPVREGDILTLLESERE 60
          M+SQIKHAVVVKVMGRTGSRGQVTQVRVKF  D +RYIMRNVKGPVREGDILTLLESERE
Sbjct: 1  MDSQIKHAVVVKVMGRTGSRGQVTQVRVKF-TDSDRYIMRNVKGPVREGDILTLLESERE 60

Query: 61 ARRLR 66
          ARRLR
Sbjct: 61 ARRLR 64

[Close]
BLAST of Bhi03G002044 vs. TAIR10
Match: AT5G03850.1 (Nucleic acid-binding, OB-fold-like protein)

HSP 1 Score: 113.2 bits (282), Expect = 5.9e-26
Identity = 60/65 (92.31%), Postives = 62/65 (95.38%), Query Frame = 0 

Query: 1  MESQIKHAVVVKVMGRTGSRGQVTQVRVKFLDDQNRYIMRNVKGPVREGDILTLLESERE 60
          M+SQIKHAVVVKVMGRTGSRGQVTQVRVKF  D +RYIMRNVKGPVREGDILTLLESERE
Sbjct: 1  MDSQIKHAVVVKVMGRTGSRGQVTQVRVKF-TDSDRYIMRNVKGPVREGDILTLLESERE 60

Query: 61 ARRLR 66
          ARRLR
Sbjct: 61 ARRLR 64

[Close]
BLAST of Bhi03G002044 vs. TAIR10
Match: AT5G64140.1 (ribosomal protein S28)

HSP 1 Score: 111.3 bits (277), Expect = 2.2e-25
Identity = 58/65 (89.23%), Postives = 62/65 (95.38%), Query Frame = 0 

Query: 1  MESQIKHAVVVKVMGRTGSRGQVTQVRVKFLDDQNRYIMRNVKGPVREGDILTLLESERE 60
          M+SQIKHAVVVKVMGRTGSRGQVTQVRVKF  D +R+IMRNVKGPVREGD+LTLLESERE
Sbjct: 1  MDSQIKHAVVVKVMGRTGSRGQVTQVRVKF-TDSDRFIMRNVKGPVREGDVLTLLESERE 60

Query: 61 ARRLR 66
          ARRLR
Sbjct: 61 ARRLR 64

[Close]
BLAST of Bhi03G002044 vs. TrEMBL
Match: tr|A0A0A0LPR2|A0A0A0LPR2_CUCSA (Uncharacterized protein OS=Cucumis sativus OX=3659 GN=Csa_1G021920 PE=3 SV=1)

HSP 1 Score: 127.1 bits (318), Expect = 1.4e-26
Identity = 65/65 (100.00%), Postives = 65/65 (100.00%), Query Frame = 0 

Query: 1  MESQIKHAVVVKVMGRTGSRGQVTQVRVKFLDDQNRYIMRNVKGPVREGDILTLLESERE 60
          MESQIKHAVVVKVMGRTGSRGQVTQVRVKFLDDQNRYIMRNVKGPVREGDILTLLESERE
Sbjct: 1  MESQIKHAVVVKVMGRTGSRGQVTQVRVKFLDDQNRYIMRNVKGPVREGDILTLLESERE 60

Query: 61 ARRLR 66
          ARRLR
Sbjct: 61 ARRLR 65

[Close]
BLAST of Bhi03G002044 vs. TrEMBL
Match: tr|A0A1S3CD61|A0A1S3CD61_CUCME (40S ribosomal protein S28-1 OS=Cucumis melo OX=3656 GN=LOC103499526 PE=3 SV=1)

HSP 1 Score: 127.1 bits (318), Expect = 1.4e-26
Identity = 65/65 (100.00%), Postives = 65/65 (100.00%), Query Frame = 0 

Query: 1  MESQIKHAVVVKVMGRTGSRGQVTQVRVKFLDDQNRYIMRNVKGPVREGDILTLLESERE 60
          MESQIKHAVVVKVMGRTGSRGQVTQVRVKFLDDQNRYIMRNVKGPVREGDILTLLESERE
Sbjct: 1  MESQIKHAVVVKVMGRTGSRGQVTQVRVKFLDDQNRYIMRNVKGPVREGDILTLLESERE 60

Query: 61 ARRLR 66
          ARRLR
Sbjct: 61 ARRLR 65

[Close]
BLAST of Bhi03G002044 vs. TrEMBL
Match: tr|A0A2R6S208|A0A2R6S208_ACTCH (40S ribosomal protein OS=Actinidia chinensis var. chinensis OX=1590841 GN=CEY00_Acc00788 PE=3 SV=1)

HSP 1 Score: 126.7 bits (317), Expect = 1.9e-26
Identity = 64/65 (98.46%), Postives = 65/65 (100.00%), Query Frame = 0 

Query: 1  MESQIKHAVVVKVMGRTGSRGQVTQVRVKFLDDQNRYIMRNVKGPVREGDILTLLESERE 60
          MESQIKHAVVVKVMGRTGSRGQVTQVRVKFLDDQNRYIMRNVKGPVREGD+LTLLESERE
Sbjct: 1  MESQIKHAVVVKVMGRTGSRGQVTQVRVKFLDDQNRYIMRNVKGPVREGDVLTLLESERE 60

Query: 61 ARRLR 66
          ARRLR
Sbjct: 61 ARRLR 65

[Close]
BLAST of Bhi03G002044 vs. TrEMBL
Match: tr|A0A2R6R534|A0A2R6R534_ACTCH (40S ribosomal protein OS=Actinidia chinensis var. chinensis OX=1590841 GN=CEY00_Acc10144 PE=3 SV=1)

HSP 1 Score: 126.3 bits (316), Expect = 2.5e-26
Identity = 63/65 (96.92%), Postives = 65/65 (100.00%), Query Frame = 0 

Query: 1  MESQIKHAVVVKVMGRTGSRGQVTQVRVKFLDDQNRYIMRNVKGPVREGDILTLLESERE 60
          MESQIKHA+VVKVMGRTGSRGQVTQVRVKFLDDQNRYIMRNVKGPVREGD+LTLLESERE
Sbjct: 1  MESQIKHAIVVKVMGRTGSRGQVTQVRVKFLDDQNRYIMRNVKGPVREGDVLTLLESERE 60

Query: 61 ARRLR 66
          ARRLR
Sbjct: 61 ARRLR 65

[Close]
BLAST of Bhi03G002044 vs. TrEMBL
Match: tr|A0A061EXX4|A0A061EXX4_THECC (Nucleic acid-binding, OB-fold-like protein OS=Theobroma cacao OX=3641 GN=TCM_025036 PE=3 SV=1)

HSP 1 Score: 125.9 bits (315), Expect = 3.2e-26
Identity = 64/65 (98.46%), Postives = 65/65 (100.00%), Query Frame = 0 

Query: 1  MESQIKHAVVVKVMGRTGSRGQVTQVRVKFLDDQNRYIMRNVKGPVREGDILTLLESERE 60
          M+SQIKHAVVVKVMGRTGSRGQVTQVRVKFLDDQNRYIMRNVKGPVREGDILTLLESERE
Sbjct: 1  MDSQIKHAVVVKVMGRTGSRGQVTQVRVKFLDDQNRYIMRNVKGPVREGDILTLLESERE 60

Query: 61 ARRLR 66
          ARRLR
Sbjct: 61 ARRLR 65

[Close]
BLAST of Bhi03G002044 vs. NCBI nr
Match: XP_004138229.1 (PREDICTED: 40S ribosomal protein S28-1 [Cucumis sativus] >XP_008453374.1 PREDICTED: 40S ribosomal protein S28-1 [Cucumis melo] >XP_008460765.1 PREDICTED: 40S ribosomal protein S28-1 [Cucumis melo] >XP_011648782.1 PREDICTED: 40S ribosomal protein S28-1 [Cucumis sativus] >XP_011653430.1 PREDICTED: 40S ribosomal protein S28-1 [Cucumis sativus] >XP_016901435.1 PREDICTED: 40S ribosomal protein S28-1 [Cucumis melo] >XP_016902595.1 PREDICTED: 40S ribosomal protein S28-1 [Cucumis melo] >XP_022152253.1 40S ribosomal protein S28-1 [Momordica charantia] >XP_022159219.1 40S ribosomal protein S28-1 [Momordica charantia] >XP_022933469.1 40S ribosomal protein S28-1 [Cucurbita moschata] >XP_022924912.1 40S ribosomal protein S28-1 [Cucurbita moschata] >XP_022931965.1 40S ribosomal protein S28-1 [Cucurbita moschata] >XP_022932895.1 40S ribosomal protein S28-1 [Cucurbita moschata] >XP_023007264.1 40S ribosomal protein S28-1 [Cucurbita maxima] >XP_022987319.1 40S ribosomal protein S28-1 [Cucurbita maxima] >XP_022966097.1 40S ribosomal protein S28-1 [Cucurbita maxima] >XP_022966510.1 40S ribosomal protein S28-1 [Cucurbita maxima] >XP_022967935.1 40S ribosomal protein S28-1 [Cucurbita maxima] >XP_022967936.1 40S ribosomal protein S28-1 [Cucurbita maxima] >XP_023529556.1 40S ribosomal protein S28-1 [Cucurbita pepo subsp. pepo] >XP_023516641.1 40S ribosomal protein S28-1 [Cucurbita pepo subsp. pepo] >KGN63802.1 hypothetical protein Csa_1G021920 [Cucumis sativus] >KGN63803.1 hypothetical protein Csa_1G021930 [Cucumis sativus])

HSP 1 Score: 127.1 bits (318), Expect = 2.2e-26
Identity = 65/65 (100.00%), Postives = 65/65 (100.00%), Query Frame = 0 

Query: 1  MESQIKHAVVVKVMGRTGSRGQVTQVRVKFLDDQNRYIMRNVKGPVREGDILTLLESERE 60
          MESQIKHAVVVKVMGRTGSRGQVTQVRVKFLDDQNRYIMRNVKGPVREGDILTLLESERE
Sbjct: 1  MESQIKHAVVVKVMGRTGSRGQVTQVRVKFLDDQNRYIMRNVKGPVREGDILTLLESERE 60

Query: 61 ARRLR 66
          ARRLR
Sbjct: 61 ARRLR 65

[Close]
BLAST of Bhi03G002044 vs. NCBI nr
Match: XP_022134697.1 (40S ribosomal protein S28-1-like [Momordica charantia])

HSP 1 Score: 127.1 bits (318), Expect = 2.2e-26
Identity = 65/65 (100.00%), Postives = 65/65 (100.00%), Query Frame = 0 

Query: 1   MESQIKHAVVVKVMGRTGSRGQVTQVRVKFLDDQNRYIMRNVKGPVREGDILTLLESERE 60
           MESQIKHAVVVKVMGRTGSRGQVTQVRVKFLDDQNRYIMRNVKGPVREGDILTLLESERE
Sbjct: 56  MESQIKHAVVVKVMGRTGSRGQVTQVRVKFLDDQNRYIMRNVKGPVREGDILTLLESERE 115

Query: 61  ARRLR 66
           ARRLR
Sbjct: 116 ARRLR 120

[Close]
BLAST of Bhi03G002044 vs. NCBI nr
Match: XP_022922061.1 (40S ribosomal protein S28-1-like isoform X1 [Cucurbita moschata])

HSP 1 Score: 127.1 bits (318), Expect = 2.2e-26
Identity = 65/65 (100.00%), Postives = 65/65 (100.00%), Query Frame = 0 

Query: 1   MESQIKHAVVVKVMGRTGSRGQVTQVRVKFLDDQNRYIMRNVKGPVREGDILTLLESERE 60
           MESQIKHAVVVKVMGRTGSRGQVTQVRVKFLDDQNRYIMRNVKGPVREGDILTLLESERE
Sbjct: 45  MESQIKHAVVVKVMGRTGSRGQVTQVRVKFLDDQNRYIMRNVKGPVREGDILTLLESERE 104

Query: 61  ARRLR 66
           ARRLR
Sbjct: 105 ARRLR 109

[Close]
BLAST of Bhi03G002044 vs. NCBI nr
Match: XP_022922062.1 (40S ribosomal protein S28-1-like isoform X2 [Cucurbita moschata])

HSP 1 Score: 127.1 bits (318), Expect = 2.2e-26
Identity = 65/65 (100.00%), Postives = 65/65 (100.00%), Query Frame = 0 

Query: 1   MESQIKHAVVVKVMGRTGSRGQVTQVRVKFLDDQNRYIMRNVKGPVREGDILTLLESERE 60
           MESQIKHAVVVKVMGRTGSRGQVTQVRVKFLDDQNRYIMRNVKGPVREGDILTLLESERE
Sbjct: 42  MESQIKHAVVVKVMGRTGSRGQVTQVRVKFLDDQNRYIMRNVKGPVREGDILTLLESERE 101

Query: 61  ARRLR 66
           ARRLR
Sbjct: 102 ARRLR 106

[Close]
BLAST of Bhi03G002044 vs. NCBI nr
Match: PSS07843.1 (40S ribosomal protein [Actinidia chinensis var. chinensis] >PSS36278.1 40S ribosomal protein [Actinidia chinensis var. chinensis])

HSP 1 Score: 126.7 bits (317), Expect = 2.8e-26
Identity = 64/65 (98.46%), Postives = 65/65 (100.00%), Query Frame = 0 

Query: 1  MESQIKHAVVVKVMGRTGSRGQVTQVRVKFLDDQNRYIMRNVKGPVREGDILTLLESERE 60
          MESQIKHAVVVKVMGRTGSRGQVTQVRVKFLDDQNRYIMRNVKGPVREGD+LTLLESERE
Sbjct: 1  MESQIKHAVVVKVMGRTGSRGQVTQVRVKFLDDQNRYIMRNVKGPVREGDVLTLLESERE 60

Query: 61 ARRLR 66
          ARRLR
Sbjct: 61 ARRLR 65

The following BLAST results are available for this feature:
BLAST of Bhi03G002044 vs. Swiss-Prot
Match NameE-valueIdentityDescription
sp|P46302|RS28_MAIZE6.2e-2590.7740S ribosomal protein S28 OS=Zea mays OX=4577 GN=RPS28 PE=3 SV=1[more]
sp|Q9SR73|RS281_ARATH1.1e-2492.3140S ribosomal protein S28-1 OS=Arabidopsis thaliana OX=3702 GN=RPS28A PE=3 SV=1[more]
sp|P34789|RS282_ARATH4.0e-2489.2340S ribosomal protein S28-2 OS=Arabidopsis thaliana OX=3702 GN=RPS28C PE=3 SV=1[more]
sp|Q6PBK3|RS28_DANRE7.9e-2080.3340S ribosomal protein S28 OS=Danio rerio OX=7955 GN=rps28 PE=3 SV=1[more]
sp|Q90YP3|RS28_ICTPU7.9e-2080.3340S ribosomal protein S28 OS=Ictalurus punctatus OX=7998 GN=rps28 PE=3 SV=1[more]
BLAST of Bhi03G002044 vs. TAIR10
Match NameE-valueIdentityDescription
AT3G10090.15.9e-2692.31Nucleic acid-binding, OB-fold-like protein[more]
AT5G03850.15.9e-2692.31Nucleic acid-binding, OB-fold-like protein[more]
AT5G64140.12.2e-2589.23ribosomal protein S28[more]
BLAST of Bhi03G002044 vs. TrEMBL
Match NameE-valueIdentityDescription
tr|A0A0A0LPR2|A0A0A0LPR2_CUCSA1.4e-26100.00Uncharacterized protein OS=Cucumis sativus OX=3659 GN=Csa_1G021920 PE=3 SV=1[more]
tr|A0A1S3CD61|A0A1S3CD61_CUCME1.4e-26100.0040S ribosomal protein S28-1 OS=Cucumis melo OX=3656 GN=LOC103499526 PE=3 SV=1[more]
tr|A0A2R6S208|A0A2R6S208_ACTCH1.9e-2698.4640S ribosomal protein OS=Actinidia chinensis var. chinensis OX=1590841 GN=CEY00_... [more]
tr|A0A2R6R534|A0A2R6R534_ACTCH2.5e-2696.9240S ribosomal protein OS=Actinidia chinensis var. chinensis OX=1590841 GN=CEY00_... [more]
tr|A0A061EXX4|A0A061EXX4_THECC3.2e-2698.46Nucleic acid-binding, OB-fold-like protein OS=Theobroma cacao OX=3641 GN=TCM_025... [more]
BLAST of Bhi03G002044 vs. NCBI nr
Match NameE-valueIdentityDescription
XP_004138229.12.2e-26100.00PREDICTED: 40S ribosomal protein S28-1 [Cucumis sativus] >XP_008453374.1 PREDICT... [more]
XP_022134697.12.2e-26100.0040S ribosomal protein S28-1-like [Momordica charantia][more]
XP_022922061.12.2e-26100.0040S ribosomal protein S28-1-like isoform X1 [Cucurbita moschata][more]
XP_022922062.12.2e-26100.0040S ribosomal protein S28-1-like isoform X2 [Cucurbita moschata][more]
PSS07843.12.8e-2698.4640S ribosomal protein [Actinidia chinensis var. chinensis] >PSS36278.1 40S ribos... [more]
Annotated Terms
The following terms have been associated with this gene:
Vocabulary: Biological Process
TermDefinition
GO:0006412translation
Vocabulary: Molecular Function
TermDefinition
GO:0003735structural constituent of ribosome
Vocabulary: Cellular Component
TermDefinition
GO:0005622intracellular
GO:0005840ribosome
Vocabulary: INTERPRO
TermDefinition
IPR012340NA-bd_OB-fold
IPR028626Ribosomal_S28e_CS
IPR000289Ribosomal_S28e
GO Annotation
GO Assignments
This gene is annotated with the following GO terms.
Category Term Accession Term Name
biological_process GO:0030490 maturation of SSU-rRNA
biological_process GO:0000028 ribosomal small subunit assembly
biological_process GO:0006412 translation
biological_process GO:0042254 ribosome biogenesis
biological_process GO:0009435 NAD biosynthetic process
biological_process GO:0006769 nicotinamide metabolic process
biological_process GO:0019357 nicotinate nucleotide biosynthetic process
cellular_component GO:0022627 cytosolic small ribosomal subunit
cellular_component GO:0005840 ribosome
cellular_component GO:0005622 intracellular
molecular_function GO:0016779 nucleotidyltransferase activity
molecular_function GO:0003735 structural constituent of ribosome
molecular_function GO:0005524 ATP binding
molecular_function GO:0000309 nicotinamide-nucleotide adenylyltransferase activity
molecular_function GO:0004515 nicotinate-nucleotide adenylyltransferase activity
Relationships

The following mRNA feature(s) are a part of this gene:

Feature NameUnique NameType
Bhi03M002044Bhi03M002044mRNA


InterPro
Analysis Name: InterPro Annotations of wax gourd
Date Performed: 2019-11-17
IPR TermIPR DescriptionSourceSource TermSource DescriptionAlignment
IPR000289Ribosomal protein S28ePFAMPF01200Ribosomal_S28ecoord: 4..64
e-value: 3.0E-33
score: 113.5
IPR000289Ribosomal protein S28ePANTHERPTHR1076940S RIBOSOMAL PROTEIN S28coord: 1..65
IPR000289Ribosomal protein S28ePRODOMPD005541coord: 1..46
e-value: 7.0E-19
score: 225.0
IPR000289Ribosomal protein S28eHAMAPMF_00292Ribosomal_S28ecoord: 1..65
score: 21.431
IPR000289Ribosomal protein S28eCDDcd04457S1_S28Ecoord: 6..65
e-value: 5.02642E-29
score: 98.4763
NoneNo IPR availableGENE3DG3DSA:2.40.50.140coord: 1..65
e-value: 3.2E-36
score: 124.9
NoneNo IPR availablePANTHERPTHR10769:SF640S RIBOSOMAL PROTEIN S28-1-RELATEDcoord: 1..65
IPR028626Ribosomal protein S28e conserved sitePROSITEPS00961RIBOSOMAL_S28Ecoord: 56..64
IPR012340Nucleic acid-binding, OB-foldSUPERFAMILYSSF50249Nucleic acid-binding proteinscoord: 2..65

Synteny
The following gene(s) are orthologous to this gene:
GeneOrthologueOrganismBlock
Bhi03G002044ClCG04G005640Watermelon (Charleston Gray)wcgwgoB385
Bhi03G002044CmaCh07G010910Cucurbita maxima (Rimu)cmawgoB1063
Bhi03G002044CmaCh03G001450Cucurbita maxima (Rimu)cmawgoB0793
Bhi03G002044CmoCh03G001490Cucurbita moschata (Rifu)cmowgoB0795
Bhi03G002044Cp4.1LG10g11220Cucurbita pepo (Zucchini)cpewgoB0089
Bhi03G002044Carg24090Silver-seed gourdcarwgoB0272
Bhi03G002044Carg13311Silver-seed gourdcarwgoB0694
Bhi03G002044Cla012100Watermelon (97103) v1wgowmB440
Bhi03G002044Cla97C04G072230Watermelon (97103) v2wgowmbB425
The following gene(s) are paralogous to this gene:

None

The following block(s) are covering this gene:
GeneOrganismBlock
Bhi03G002044Cucumber (Gy14) v1cgywgoB071
Bhi03G002044Cucumber (Gy14) v1cgywgoB687
Bhi03G002044Cucumber (Gy14) v2cgybwgoB389
Bhi03G002044Cucurbita moschata (Rifu)cmowgoB1056
Bhi03G002044Cucurbita pepo (Zucchini)cpewgoB0612
Bhi03G002044Wild cucumber (PI 183967)cpiwgoB334
Bhi03G002044Wild cucumber (PI 183967)cpiwgoB409
Bhi03G002044Cucumber (Chinese Long) v3cucwgoB338
Bhi03G002044Cucumber (Chinese Long) v3cucwgoB412
Bhi03G002044Cucumber (Chinese Long) v2cuwgoB331
Bhi03G002044Cucumber (Chinese Long) v2cuwgoB408
Bhi03G002044Bottle gourd (USVL1VR-Ls)lsiwgoB182
Bhi03G002044Melon (DHL92) v3.6.1medwgoB425
Bhi03G002044Melon (DHL92) v3.6.1medwgoB647
Bhi03G002044Melon (DHL92) v3.5.1mewgoB423
Bhi03G002044Melon (DHL92) v3.5.1mewgoB641
Bhi03G002044Watermelon (Charleston Gray)wcgwgoB125
Bhi03G002044Watermelon (97103) v2wgowmbB411
Bhi03G002044Watermelon (97103) v1wgowmB411