CmoCh01G006270 (gene) Cucurbita moschata (Rifu)

Overview
NameCmoCh01G006270
Typegene
OrganismCucurbita moschata (Cucurbita moschata (Rifu))
DescriptionRING-H2 zinc finger protein
LocationCmo_Chr01 : 3230177 .. 3230608 (+)
Genome Viewer
Sequences
The following sequences are available for this feature:

Gene sequence (with intron)

Legend: exonCDS
Hold the cursor over a type above to highlight its positions in the sequence below.
ATGCCGTTGCCGCCGTCTTTTGCCGCTTCACCGCCGCCAATTAGCGCCATCGTGGAGACTTACGGACTGAGATGGACGAATAACAATTTGGCTCTGATAGCCATTTGTTTCCTCATTATACTCTACCTCATCCTCTTAAATTTCTTCAAATCCGAATTAGAATCCGGCAGTGAGCCAGCCGGAGCATTGCCGGTAGTGCGAGAGCCGGAGATTGTACGGGTTGAGGCCTCGGTTTTCAGTTACAAGGAAGCCGATGGAGGTCACGACGATGAATGTGCGATTTGCCTTGACGAATTTGAAGATGCCCAAAAGTGCCGGAAGATGAATAACTGTGGCCATATATTCCACCGCCGCTGCATTGACCGGTGGCTCAAGGTGGACCGCCACTGCCCCCTTTGCCGCAGCTGCGTTTGCGTAGTCGTTCATCCATGA

mRNA sequence

ATGCCGTTGCCGCCGTCTTTTGCCGCTTCACCGCCGCCAATTAGCGCCATCGTGGAGACTTACGGACTGAGATGGACGAATAACAATTTGGCTCTGATAGCCATTTGTTTCCTCATTATACTCTACCTCATCCTCTTAAATTTCTTCAAATCCGAATTAGAATCCGGCAGTGAGCCAGCCGGAGCATTGCCGGTAGTGCGAGAGCCGGAGATTGTACGGGTTGAGGCCTCGGTTTTCAGTTACAAGGAAGCCGATGGAGGTCACGACGATGAATGTGCGATTTGCCTTGACGAATTTGAAGATGCCCAAAAGTGCCGGAAGATGAATAACTGTGGCCATATATTCCACCGCCGCTGCATTGACCGGTGGCTCAAGGTGGACCGCCACTGCCCCCTTTGCCGCAGCTGCGTTTGCGTAGTCGTTCATCCATGA

Coding sequence (CDS)

ATGCCGTTGCCGCCGTCTTTTGCCGCTTCACCGCCGCCAATTAGCGCCATCGTGGAGACTTACGGACTGAGATGGACGAATAACAATTTGGCTCTGATAGCCATTTGTTTCCTCATTATACTCTACCTCATCCTCTTAAATTTCTTCAAATCCGAATTAGAATCCGGCAGTGAGCCAGCCGGAGCATTGCCGGTAGTGCGAGAGCCGGAGATTGTACGGGTTGAGGCCTCGGTTTTCAGTTACAAGGAAGCCGATGGAGGTCACGACGATGAATGTGCGATTTGCCTTGACGAATTTGAAGATGCCCAAAAGTGCCGGAAGATGAATAACTGTGGCCATATATTCCACCGCCGCTGCATTGACCGGTGGCTCAAGGTGGACCGCCACTGCCCCCTTTGCCGCAGCTGCGTTTGCGTAGTCGTTCATCCATGA
Homology
[Close]
BLAST of CmoCh01G006270 vs. Swiss-Prot
Match: ATL52_ARATH (RING-H2 finger protein ATL52 OS=Arabidopsis thaliana GN=ATL52 PE=2 SV=1)

HSP 1 Score: 69.7 bits (169), Expect = 2.9e-11
Identity = 31/68 (45.59%), Postives = 42/68 (61.76%), Query Frame = 1 

Query: 77  SVFSYKEADGGHD-DECAICLDEFEDAQKCRKMNNCGHIFHRRCIDRWLKVDRHCPLCRS 136
           +V+ YK  DG  D  +C++CL EFE+ +  R +  C H FH  CID WLK   +CPLCR+
Sbjct: 126 TVYKYKSGDGFVDGSDCSVCLSEFEENESLRLLPKCNHAFHLPCIDTWLKSHSNCPLCRA 185

Query: 137 CVCVVVHP 144
            V  V +P
Sbjct: 186 FVTGVNNP 193

[Close]
BLAST of CmoCh01G006270 vs. Swiss-Prot
Match: ATL41_ORYSJ (E3 ubiquitin-protein ligase Os04g0590900 OS=Oryza sativa subsp. japonica GN=Os04g0590900 PE=2 SV=2)

HSP 1 Score: 68.2 bits (165), Expect = 8.5e-11
Identity = 28/65 (43.08%), Postives = 40/65 (61.54%), Query Frame = 1 

Query: 77  SVFSYKEADGG-HDDECAICLDEFEDAQKCRKMNNCGHIFHRRCIDRWLKVDRHCPLCRS 136
           +V  Y+  DG  H  +C++CL EF D +  R +  C H FH++CID WLK   +CPLCR+
Sbjct: 141 TVCKYRRGDGFVHTTDCSVCLGEFSDGESLRLLPRCSHAFHQQCIDTWLKSHSNCPLCRA 200

Query: 137 CVCVV 141
            +  V
Sbjct: 201 NITFV 205

[Close]
BLAST of CmoCh01G006270 vs. Swiss-Prot
Match: ATL56_ARATH (RING-H2 finger protein ATL56 OS=Arabidopsis thaliana GN=ATL56 PE=2 SV=1)

HSP 1 Score: 67.8 bits (164), Expect = 1.1e-10
Identity = 37/115 (32.17%), Postives = 58/115 (50.43%), Query Frame = 1 

Query: 30  LALIAICFLIILYLILLNFFK-------SELESGSEPAGALPVVREPEIVRVEASVFSYK 89
           L LI I  ++IL L+L +  +       +  +  S+   +  V + P+    E S ++  
Sbjct: 47  LVLIGIASVLILPLLLSSLHRHHRRRRRNRRQESSDGLSSRFVKKLPQFKFSEPSTYTRY 106

Query: 90  EADGGHDDECAICLDEFEDAQKCRKMNNCGHIFHRRCIDRWLKVDRHCPLCRSCV 138
           E+D      C +C D F   Q CR +  CGH+FHR+C+D WL     CP+CR+ V
Sbjct: 107 ESD------CVVCFDGFRQGQWCRNLPGCGHVFHRKCVDTWLLKASTCPICRARV 155

[Close]
BLAST of CmoCh01G006270 vs. Swiss-Prot
Match: ATL55_ARATH (E3 ubiquitin-protein ligase RING1 OS=Arabidopsis thaliana GN=ATL55 PE=1 SV=1)

HSP 1 Score: 67.0 bits (162), Expect = 1.9e-10
Identity = 28/68 (41.18%), Postives = 43/68 (63.24%), Query Frame = 1 

Query: 77  SVFSYKEADGGHDD-ECAICLDEFEDAQKCRKMNNCGHIFHRRCIDRWLKVDRHCPLCRS 136
           +V  +K+ +G  D  EC++CL+EFE+ +  R +  C H FH  CID WL   ++CPLCR+
Sbjct: 119 TVVGFKKGEGIIDGTECSVCLNEFEEDESLRLLPKCSHAFHLNCIDTWLLSHKNCPLCRA 178

Query: 137 CVCVVVHP 144
            V ++  P
Sbjct: 179 PVLLITEP 186

[Close]
BLAST of CmoCh01G006270 vs. Swiss-Prot
Match: ATL14_ARATH (RING-H2 finger protein ATL14 OS=Arabidopsis thaliana GN=ATL14 PE=2 SV=1)

HSP 1 Score: 67.0 bits (162), Expect = 1.9e-10
Identity = 27/60 (45.00%), Postives = 36/60 (60.00%), Query Frame = 1 

Query: 79  FSYKEADGGHD-DECAICLDEFEDAQKCRKMNNCGHIFHRRCIDRWLKVDRHCPLCRSCV 138
           F Y E    +  D+C +C+D F   Q CRK+  CGH+FHR+C+D WL     CP+CR  V
Sbjct: 101 FKYCEPSSEYGGDDCVVCIDGFRQGQWCRKLPRCGHVFHRKCVDLWLIKVSTCPICRDRV 160

[Close]
BLAST of CmoCh01G006270 vs. TrEMBL
Match: A0A0A0LXE1_CUCSA (Uncharacterized protein OS=Cucumis sativus GN=Csa_1G515480 PE=4 SV=1)

HSP 1 Score: 134.8 bits (338), Expect = 8.2e-29
Identity = 78/156 (50.00%), Postives = 98/156 (62.82%), Query Frame = 1 

Query: 1   MPLPPSFAASPPPIS---AIVETYGLRWTNNNLALIAICFLIILYLILLNFF------KS 60
           M  PP  AASP P +   AI + + L        L AICF II+Y +   F+      +S
Sbjct: 1   MSPPPYIAASPMPTNGFEAIFDDFEL--------LAAICFAIIVYFLSFTFYFKTGNNES 60

Query: 61  ELESGSEPAGALPVVREPEIVRVEASVFSY-KEADGGHDD---ECAICLDEFEDAQKCRK 120
           E ++G+     LPV RE EIV++E  VFSY +EA G  +D   EC ICL++FED QKC+ 
Sbjct: 61  EFDTGTVE-DRLPVFREREIVQIETMVFSYYREAKGSENDDDYECVICLNKFEDGQKCQW 120

Query: 121 MNNCGHIFHRRCIDRWLKVDRHCPLCRSCVCVVVHP 144
           M  CGHIFH  CIDRWL+ +R CPLCRSCVCVVV+P
Sbjct: 121 MKKCGHIFHCSCIDRWLRTERECPLCRSCVCVVVNP 147

[Close]
BLAST of CmoCh01G006270 vs. TrEMBL
Match: A0A0A0K790_CUCSA (Uncharacterized protein OS=Cucumis sativus GN=Csa_7G387140 PE=4 SV=1)

HSP 1 Score: 106.3 bits (264), Expect = 3.1e-20
Identity = 59/140 (42.14%), Postives = 79/140 (56.43%), Query Frame = 1 

Query: 3   LPPSFAASPPPISAIVETYGLRWTNNNLALIAICFLIILY-LILLNFFKSELESGSEPAG 62
           LP     SP PI ++     L     +L  + +  LI+L+  IL+   K   +S  E   
Sbjct: 7   LPSLMPLSPSPIPSLHSLILLPGFIMDLLTVPMLLLIVLFSFILILCRKRSAKSDGEEL- 66

Query: 63  ALPVVREPEIVRVEASVFSYKEADGGHDDECAICLDEFEDAQKCRKMNNCGHIFHRRCID 122
                  PE + +EA +F Y   +G  + ECAICL E E+ +KCRKM  CGH+FH+ CID
Sbjct: 67  -------PENLDIEAPIFHYNGVEGD-EQECAICLCEIEEGEKCRKMKTCGHVFHKDCID 126

Query: 123 RWLKVDRHCPLCRSCVCVVV 142
           RW KVD HCP+CR+ VCVVV
Sbjct: 127 RWFKVDGHCPICRTSVCVVV 137

[Close]
BLAST of CmoCh01G006270 vs. TrEMBL
Match: A0A0A0LY10_CUCSA (Uncharacterized protein OS=Cucumis sativus GN=Csa_1G514470 PE=4 SV=1)

HSP 1 Score: 102.8 bits (255), Expect = 3.5e-19
Identity = 52/110 (47.27%), Postives = 69/110 (62.73%), Query Frame = 1 

Query: 32  LIAICFLIILYLILLNFFKSELESGSEPAGALPVVREPEIVRVEASVFSYKEADGGHDDE 91
           L+A  FL I+ L+ ++    +  + S+      V   PE V +EA +F Y   +GG  D 
Sbjct: 25  LMASMFLSIVLLLFISILCRKRSAKSD------VEEFPENVDIEAPIFHYGGDEGGEQD- 84

Query: 92  CAICLDEFEDAQKCRKMNNCGHIFHRRCIDRWLKVDRHCPLCRSCVCVVV 142
           CAICL E E+ +KCRKM  CGH+FH+ CI RW KVD HCP+CR+ VCVVV
Sbjct: 85  CAICLCEIEEGEKCRKMKTCGHVFHKDCIGRWFKVDGHCPICRTSVCVVV 127

[Close]
BLAST of CmoCh01G006270 vs. TrEMBL
Match: A0A0A0LY13_CUCSA (Uncharacterized protein OS=Cucumis sativus GN=Csa_1G521990 PE=4 SV=1)

HSP 1 Score: 97.8 bits (242), Expect = 1.1e-17
Identity = 51/105 (48.57%), Postives = 67/105 (63.81%), Query Frame = 1 

Query: 37  FLIILYLILLNFFKSELESGSEPAGALPVVREPEIVRVEASVFSYKEADGGHDDECAICL 96
           FL I+ L  ++   S+  + S+      V   P+ V +EA VF Y   +GG + E AICL
Sbjct: 5   FLPIVLLFFISIVCSKRFAKSD------VEELPKNVDLEALVFHYNGDEGG-EQEYAICL 64

Query: 97  DEFEDAQKCRKMNNCGHIFHRRCIDRWLKVDRHCPLCRSCVCVVV 142
            E E+ +KCRKM  CGH+FH+ CIDRW KVD HCP+CR+ VCVVV
Sbjct: 65  CEIEEGEKCRKMKTCGHVFHKDCIDRWFKVDDHCPICRTSVCVVV 102

[Close]
BLAST of CmoCh01G006270 vs. TrEMBL
Match: A0A0A0LUU6_CUCSA (Uncharacterized protein OS=Cucumis sativus GN=Csa_1G512470 PE=4 SV=1)

HSP 1 Score: 96.7 bits (239), Expect = 2.5e-17
Identity = 49/114 (42.98%), Postives = 69/114 (60.53%), Query Frame = 1 

Query: 30  LALIAICFLIILYLIL--LNFFKSELESGSEPAGALPVVREPEIVRVEASVFSYKEADGG 89
           L  +++  LI+L+L +  L   +S    G E +  L +         EA +F Y   +GG
Sbjct: 3   LMTVSMLLLIVLFLFIAILCTKRSAKYDGEESSDNLDI---------EAPIFHYSGVEGG 62

Query: 90  HDDECAICLDEFEDAQKCRKMNNCGHIFHRRCIDRWLKVDRHCPLCRSCVCVVV 142
            + EC ICL E E+ +KCRKM  CGH+FH+ CIDRW KV+ HCP+CR+ VC+VV
Sbjct: 63  -EQECVICLCEIEEGEKCRKMKTCGHVFHKDCIDRWFKVNGHCPICRTSVCMVV 106

[Close]
BLAST of CmoCh01G006270 vs. TAIR10
Match: AT1G51930.1 (AT1G51930.1 RING/U-box superfamily protein)

HSP 1 Score: 69.7 bits (169), Expect = 1.6e-12
Identity = 29/62 (46.77%), Postives = 40/62 (64.52%), Query Frame = 1 

Query: 82  KEADGGHDDE------CAICLDEFEDAQKCRKMNNCGHIFHRRCIDRWLKVDRHCPLCRS 138
           KE +GG ++E      C ICL+E+ED  + R++ NCGH+FH  CID WL   ++CP CR 
Sbjct: 64  KEEEGGREEEGGGKRFCPICLEEYEDDHQIRRLRNCGHVFHLLCIDSWLTQKQNCPSCRR 123

[Close]
BLAST of CmoCh01G006270 vs. TAIR10
Match: AT5G17600.1 (AT5G17600.1 RING/U-box superfamily protein)

HSP 1 Score: 69.7 bits (169), Expect = 1.6e-12
Identity = 31/68 (45.59%), Postives = 42/68 (61.76%), Query Frame = 1 

Query: 77  SVFSYKEADGGHD-DECAICLDEFEDAQKCRKMNNCGHIFHRRCIDRWLKVDRHCPLCRS 136
           +V+ YK  DG  D  +C++CL EFE+ +  R +  C H FH  CID WLK   +CPLCR+
Sbjct: 126 TVYKYKSGDGFVDGSDCSVCLSEFEENESLRLLPKCNHAFHLPCIDTWLKSHSNCPLCRA 185

Query: 137 CVCVVVHP 144
            V  V +P
Sbjct: 186 FVTGVNNP 193

[Close]
BLAST of CmoCh01G006270 vs. TAIR10
Match: AT2G18670.1 (AT2G18670.1 RING/U-box superfamily protein)

HSP 1 Score: 67.8 bits (164), Expect = 6.3e-12
Identity = 37/115 (32.17%), Postives = 58/115 (50.43%), Query Frame = 1 

Query: 30  LALIAICFLIILYLILLNFFK-------SELESGSEPAGALPVVREPEIVRVEASVFSYK 89
           L LI I  ++IL L+L +  +       +  +  S+   +  V + P+    E S ++  
Sbjct: 47  LVLIGIASVLILPLLLSSLHRHHRRRRRNRRQESSDGLSSRFVKKLPQFKFSEPSTYTRY 106

Query: 90  EADGGHDDECAICLDEFEDAQKCRKMNNCGHIFHRRCIDRWLKVDRHCPLCRSCV 138
           E+D      C +C D F   Q CR +  CGH+FHR+C+D WL     CP+CR+ V
Sbjct: 107 ESD------CVVCFDGFRQGQWCRNLPGCGHVFHRKCVDTWLLKASTCPICRARV 155

[Close]
BLAST of CmoCh01G006270 vs. TAIR10
Match: AT4G30370.1 (AT4G30370.1 RING/U-box superfamily protein)

HSP 1 Score: 67.0 bits (162), Expect = 1.1e-11
Identity = 27/60 (45.00%), Postives = 36/60 (60.00%), Query Frame = 1 

Query: 79  FSYKEADGGHD-DECAICLDEFEDAQKCRKMNNCGHIFHRRCIDRWLKVDRHCPLCRSCV 138
           F Y E    +  D+C +C+D F   Q CRK+  CGH+FHR+C+D WL     CP+CR  V
Sbjct: 101 FKYCEPSSEYGGDDCVVCIDGFRQGQWCRKLPRCGHVFHRKCVDLWLIKVSTCPICRDRV 160

[Close]
BLAST of CmoCh01G006270 vs. TAIR10
Match: AT3G43430.1 (AT3G43430.1 RING/U-box superfamily protein)

HSP 1 Score: 67.0 bits (162), Expect = 1.1e-11
Identity = 33/94 (35.11%), Postives = 51/94 (54.26%), Query Frame = 1 

Query: 51  SELESGSEPAGALPVVREPEIVRVEASVFSYKEADGGHDDECAICLDEFEDAQKCRKMNN 110
           S  +S S P+ +   ++E   + V A   + + +    +D CA+CL + ED  + R++ N
Sbjct: 44  SSSQSSSSPSISSQTIKES--LAVSAFRDAVERSPAAINDMCAVCLGDLEDEDEIRELRN 103

Query: 111 CGHIFHRRCIDRWLKVD---------RHCPLCRS 136
           C H+FHR CIDRWL  +         R CPLCR+
Sbjct: 104 CTHVFHRDCIDRWLDYECCGGDDDNHRTCPLCRT 135

[Close]
BLAST of CmoCh01G006270 vs. NCBI nr
Match: gi|449466637|ref|XP_004151032.1| (PREDICTED: RING-H2 finger protein ATL66 [Cucumis sativus])

HSP 1 Score: 134.8 bits (338), Expect = 1.2e-28
Identity = 78/156 (50.00%), Postives = 98/156 (62.82%), Query Frame = 1 

Query: 1   MPLPPSFAASPPPIS---AIVETYGLRWTNNNLALIAICFLIILYLILLNFF------KS 60
           M  PP  AASP P +   AI + + L        L AICF II+Y +   F+      +S
Sbjct: 1   MSPPPYIAASPMPTNGFEAIFDDFEL--------LAAICFAIIVYFLSFTFYFKTGNNES 60

Query: 61  ELESGSEPAGALPVVREPEIVRVEASVFSY-KEADGGHDD---ECAICLDEFEDAQKCRK 120
           E ++G+     LPV RE EIV++E  VFSY +EA G  +D   EC ICL++FED QKC+ 
Sbjct: 61  EFDTGTVE-DRLPVFREREIVQIETMVFSYYREAKGSENDDDYECVICLNKFEDGQKCQW 120

Query: 121 MNNCGHIFHRRCIDRWLKVDRHCPLCRSCVCVVVHP 144
           M  CGHIFH  CIDRWL+ +R CPLCRSCVCVVV+P
Sbjct: 121 MKKCGHIFHCSCIDRWLRTERECPLCRSCVCVVVNP 147

[Close]
BLAST of CmoCh01G006270 vs. NCBI nr
Match: gi|659115464|ref|XP_008457571.1| (PREDICTED: RING-H2 finger protein ATL66-like [Cucumis melo])

HSP 1 Score: 130.6 bits (327), Expect = 2.2e-27
Identity = 76/163 (46.63%), Postives = 94/163 (57.67%), Query Frame = 1 

Query: 1   MPLPPSFAASPPPISAIVETYGLRWTNNNLALIAICFLIILYLILLNFF----KSELESG 60
           M  P   AASP P++ I   +     ++   + AICF II+Y I    +     ++ +S 
Sbjct: 1   MSSPAYIAASPMPMNGIEALF-----DDYDVVAAICFAIIVYFISFTLYFKTGNNDYQSD 60

Query: 61  SEPAGA---LPVVRE------PEIVRVEASVFSYKEA-------DGGHDDECAICLDEFE 120
               G    LP  RE       EIV++EA VFSY+EA       D   D EC ICL++FE
Sbjct: 61  QSDVGTVEELPAFRERVVRDQQEIVQIEAMVFSYREAKRSENDDDDDDDYECVICLNKFE 120

Query: 121 DAQKCRKMNNCGHIFHRRCIDRWLKVDRHCPLCRSCVCVVVHP 144
           DAQKCR M  CGHIFHR CIDRWLK +R CPLCR+CVCVVV P
Sbjct: 121 DAQKCRWMKKCGHIFHRSCIDRWLKTERECPLCRTCVCVVVKP 158

[Close]
BLAST of CmoCh01G006270 vs. NCBI nr
Match: gi|700189546|gb|KGN44779.1| (hypothetical protein Csa_7G387140 [Cucumis sativus])

HSP 1 Score: 106.3 bits (264), Expect = 4.5e-20
Identity = 59/140 (42.14%), Postives = 79/140 (56.43%), Query Frame = 1 

Query: 3   LPPSFAASPPPISAIVETYGLRWTNNNLALIAICFLIILY-LILLNFFKSELESGSEPAG 62
           LP     SP PI ++     L     +L  + +  LI+L+  IL+   K   +S  E   
Sbjct: 7   LPSLMPLSPSPIPSLHSLILLPGFIMDLLTVPMLLLIVLFSFILILCRKRSAKSDGEEL- 66

Query: 63  ALPVVREPEIVRVEASVFSYKEADGGHDDECAICLDEFEDAQKCRKMNNCGHIFHRRCID 122
                  PE + +EA +F Y   +G  + ECAICL E E+ +KCRKM  CGH+FH+ CID
Sbjct: 67  -------PENLDIEAPIFHYNGVEGD-EQECAICLCEIEEGEKCRKMKTCGHVFHKDCID 126

Query: 123 RWLKVDRHCPLCRSCVCVVV 142
           RW KVD HCP+CR+ VCVVV
Sbjct: 127 RWFKVDGHCPICRTSVCVVV 137

[Close]
BLAST of CmoCh01G006270 vs. NCBI nr
Match: gi|778730386|ref|XP_011659772.1| (PREDICTED: RING-H2 finger protein ATL39-like [Cucumis sativus])

HSP 1 Score: 104.8 bits (260), Expect = 1.3e-19
Identity = 57/133 (42.86%), Postives = 77/133 (57.89%), Query Frame = 1 

Query: 10  SPPPISAIVETYGLRWTNNNLALIAICFLIILY-LILLNFFKSELESGSEPAGALPVVRE 69
           SP PI ++     L     +L  + +  LI+L+  IL+   K   +S  E          
Sbjct: 4   SPSPIPSLHSLILLPGFIMDLLTVPMLLLIVLFSFILILCRKRSAKSDGEEL-------- 63

Query: 70  PEIVRVEASVFSYKEADGGHDDECAICLDEFEDAQKCRKMNNCGHIFHRRCIDRWLKVDR 129
           PE + +EA +F Y   +G  + ECAICL E E+ +KCRKM  CGH+FH+ CIDRW KVD 
Sbjct: 64  PENLDIEAPIFHYNGVEGD-EQECAICLCEIEEGEKCRKMKTCGHVFHKDCIDRWFKVDG 123

Query: 130 HCPLCRSCVCVVV 142
           HCP+CR+ VCVVV
Sbjct: 124 HCPICRTSVCVVV 127

[Close]
BLAST of CmoCh01G006270 vs. NCBI nr
Match: gi|778730799|ref|XP_011659858.1| (PREDICTED: E3 ubiquitin-protein ligase ATL9-like [Cucumis sativus])

HSP 1 Score: 104.8 bits (260), Expect = 1.3e-19
Identity = 61/142 (42.96%), Postives = 81/142 (57.04%), Query Frame = 1 

Query: 1   MPLPPSFAASPPPISAIV-ETYGLRWTNNNLALIAICFLIILYLILLNFFKSELESGSEP 60
           MPL PS    PP  S I+   + +     ++ L+ + FL I  L      KS+ E  SE 
Sbjct: 1   MPLSPS--PLPPLHSPILLPGFFMVLLTISMLLLIVLFLFIAILCTKRSAKSDREELSEN 60

Query: 61  AGALPVVREPEIVRVEASVFSYKEADGGHDDECAICLDEFEDAQKCRKMNNCGHIFHRRC 120
                       + +EA +F Y E +GG + ECAICL E E+ +KCRKM  CGH+FH+ C
Sbjct: 61  ------------LDIEAPIFHYNEVEGG-EQECAICLCEIEEGEKCRKMKTCGHVFHKDC 120

Query: 121 IDRWLKVDRHCPLCRSCVCVVV 142
           IDRW KV+ HCP+CR+ VCVVV
Sbjct: 121 IDRWFKVNGHCPICRTSVCVVV 127

The following BLAST results are available for this feature:
BLAST of CmoCh01G006270 vs. Swiss-Prot
Match NameE-valueIdentityDescription
ATL52_ARATH2.9e-1145.59RING-H2 finger protein ATL52 OS=Arabidopsis thaliana GN=ATL52 PE=2 SV=1[more]
ATL41_ORYSJ8.5e-1143.08E3 ubiquitin-protein ligase Os04g0590900 OS=Oryza sativa subsp. japonica GN=Os04... [more]
ATL56_ARATH1.1e-1032.17RING-H2 finger protein ATL56 OS=Arabidopsis thaliana GN=ATL56 PE=2 SV=1[more]
ATL55_ARATH1.9e-1041.18E3 ubiquitin-protein ligase RING1 OS=Arabidopsis thaliana GN=ATL55 PE=1 SV=1[more]
ATL14_ARATH1.9e-1045.00RING-H2 finger protein ATL14 OS=Arabidopsis thaliana GN=ATL14 PE=2 SV=1[more]
BLAST of CmoCh01G006270 vs. TrEMBL
Match NameE-valueIdentityDescription
A0A0A0LXE1_CUCSA8.2e-2950.00Uncharacterized protein OS=Cucumis sativus GN=Csa_1G515480 PE=4 SV=1[more]
A0A0A0K790_CUCSA3.1e-2042.14Uncharacterized protein OS=Cucumis sativus GN=Csa_7G387140 PE=4 SV=1[more]
A0A0A0LY10_CUCSA3.5e-1947.27Uncharacterized protein OS=Cucumis sativus GN=Csa_1G514470 PE=4 SV=1[more]
A0A0A0LY13_CUCSA1.1e-1748.57Uncharacterized protein OS=Cucumis sativus GN=Csa_1G521990 PE=4 SV=1[more]
A0A0A0LUU6_CUCSA2.5e-1742.98Uncharacterized protein OS=Cucumis sativus GN=Csa_1G512470 PE=4 SV=1[more]
BLAST of CmoCh01G006270 vs. TAIR10
Match NameE-valueIdentityDescription
AT1G51930.11.6e-1246.77 RING/U-box superfamily protein[more]
AT5G17600.11.6e-1245.59 RING/U-box superfamily protein[more]
AT2G18670.16.3e-1232.17 RING/U-box superfamily protein[more]
AT4G30370.11.1e-1145.00 RING/U-box superfamily protein[more]
AT3G43430.11.1e-1135.11 RING/U-box superfamily protein[more]
BLAST of CmoCh01G006270 vs. NCBI nr
Match NameE-valueIdentityDescription
gi|449466637|ref|XP_004151032.1|1.2e-2850.00PREDICTED: RING-H2 finger protein ATL66 [Cucumis sativus][more]
gi|659115464|ref|XP_008457571.1|2.2e-2746.63PREDICTED: RING-H2 finger protein ATL66-like [Cucumis melo][more]
gi|700189546|gb|KGN44779.1|4.5e-2042.14hypothetical protein Csa_7G387140 [Cucumis sativus][more]
gi|778730386|ref|XP_011659772.1|1.3e-1942.86PREDICTED: RING-H2 finger protein ATL39-like [Cucumis sativus][more]
gi|778730799|ref|XP_011659858.1|1.3e-1942.96PREDICTED: E3 ubiquitin-protein ligase ATL9-like [Cucumis sativus][more]
Annotated Terms
The following terms have been associated with this gene:
Vocabulary: INTERPRO
TermDefinition
IPR001841Znf_RING
IPR013083Znf_RING/FYVE/PHD
Vocabulary: Molecular Function
TermDefinition
GO:0005515protein binding
GO:0008270zinc ion binding
GO Annotation
GO Assignments
This gene is annotated with the following GO terms.
Category Term Accession Term Name
biological_process GO:0008150 biological_process
cellular_component GO:0005575 cellular_component
cellular_component GO:0016021 integral component of membrane
molecular_function GO:0005515 protein binding
molecular_function GO:0008270 zinc ion binding
molecular_function GO:0003674 molecular_function
Relationships

The following mRNA feature(s) are a part of this gene:

Feature NameUnique NameType
CmoCh01G006270.1CmoCh01G006270.1mRNA


InterPro
Analysis Name: InterPro Annotations of Cucurbita moschata
Date Performed: 2017-05-19
IPR TermIPR DescriptionSourceSource TermSource DescriptionAlignment
IPR001841Zinc finger, RING-typePFAMPF13639zf-RING_2coord: 90..134
score: 9.9
IPR001841Zinc finger, RING-typeSMARTSM00184ring_2coord: 92..133
score: 2.
IPR001841Zinc finger, RING-typePROFILEPS50089ZF_RING_2coord: 92..134
score: 13
IPR013083Zinc finger, RING/FYVE/PHD-typeGENE3DG3DSA:3.30.40.10coord: 88..135
score: 4.5
NoneNo IPR availablePANTHERPTHR14155RING FINGER DOMAIN-CONTAININGcoord: 78..137
score: 3.1
NoneNo IPR availableunknownSSF57850RING/U-boxcoord: 78..139
score: 2.65

Synteny
The following gene(s) are orthologous to this gene:
GeneOrthologueOrganismBlock
CmoCh01G006270Cucsa.117910Cucumber (Gy14) v1cgycmoB0287
CmoCh01G006270CmaCh01G006030Cucurbita maxima (Rimu)cmacmoB468
CmoCh01G006270Cla008241Watermelon (97103) v1cmowmB422
CmoCh01G006270Csa1G512470Cucumber (Chinese Long) v2cmocuB416
CmoCh01G006270MELO3C020632Melon (DHL92) v3.5.1cmomeB382
CmoCh01G006270ClCG03G001500Watermelon (Charleston Gray)cmowcgB403
CmoCh01G006270CSPI01G23000Wild cucumber (PI 183967)cmocpiB420
CmoCh01G006270Lsi02G013590Bottle gourd (USVL1VR-Ls)cmolsiB403
CmoCh01G006270Cp4.1LG20g08610Cucurbita pepo (Zucchini)cmocpeB441
CmoCh01G006270Cp4.1LG02g13390Cucurbita pepo (Zucchini)cmocpeB449
CmoCh01G006270MELO3C035276.2Melon (DHL92) v3.6.1cmomedB439
CmoCh01G006270CsaV3_1G034160Cucumber (Chinese Long) v3cmocucB0500
CmoCh01G006270Cla97C03G052440Watermelon (97103) v2cmowmbB448
CmoCh01G006270Bhi08G000521Wax gourdcmowgoB0590
CmoCh01G006270CsGy1G022490Cucumber (Gy14) v2cgybcmoB098
CmoCh01G006270Carg12371Silver-seed gourdcarcmoB0596
CmoCh01G006270Carg20658Silver-seed gourdcarcmoB0518
The following gene(s) are paralogous to this gene:

None

The following block(s) are covering this gene:
GeneOrganismBlock
CmoCh01G006270Cucumber (Gy14) v1cgycmoB0469
CmoCh01G006270Cucumber (Gy14) v1cgycmoB0502
CmoCh01G006270Cucurbita maxima (Rimu)cmacmoB226
CmoCh01G006270Cucurbita maxima (Rimu)cmacmoB259
CmoCh01G006270Cucurbita maxima (Rimu)cmacmoB545
CmoCh01G006270Cucurbita maxima (Rimu)cmacmoB594
CmoCh01G006270Cucurbita maxima (Rimu)cmacmoB815
CmoCh01G006270Wild cucumber (PI 183967)cmocpiB452
CmoCh01G006270Wild cucumber (PI 183967)cmocpiB481
CmoCh01G006270Cucumber (Chinese Long) v2cmocuB449
CmoCh01G006270Cucumber (Chinese Long) v2cmocuB476
CmoCh01G006270Melon (DHL92) v3.5.1cmomeB378
CmoCh01G006270Melon (DHL92) v3.5.1cmomeB412
CmoCh01G006270Watermelon (Charleston Gray)cmowcgB382
CmoCh01G006270Watermelon (Charleston Gray)cmowcgB397
CmoCh01G006270Watermelon (97103) v1cmowmB449
CmoCh01G006270Watermelon (97103) v1cmowmB408
CmoCh01G006270Cucurbita pepo (Zucchini)cmocpeB429
CmoCh01G006270Cucurbita pepo (Zucchini)cmocpeB459
CmoCh01G006270Bottle gourd (USVL1VR-Ls)cmolsiB383
CmoCh01G006270Cucumber (Gy14) v2cgybcmoB344
CmoCh01G006270Cucumber (Gy14) v2cgybcmoB483
CmoCh01G006270Cucumber (Gy14) v2cgybcmoB757
CmoCh01G006270Melon (DHL92) v3.6.1cmomedB435
CmoCh01G006270Melon (DHL92) v3.6.1cmomedB470
CmoCh01G006270Silver-seed gourdcarcmoB0418
CmoCh01G006270Silver-seed gourdcarcmoB0461
CmoCh01G006270Silver-seed gourdcarcmoB1337
CmoCh01G006270Cucumber (Chinese Long) v3cmocucB0537
CmoCh01G006270Cucumber (Chinese Long) v3cmocucB0547
CmoCh01G006270Cucumber (Chinese Long) v3cmocucB0563
CmoCh01G006270Cucumber (Chinese Long) v3cmocucB0571
CmoCh01G006270Watermelon (97103) v2cmowmbB424
CmoCh01G006270Watermelon (97103) v2cmowmbB442
CmoCh01G006270Watermelon (97103) v2cmowmbB453
CmoCh01G006270Watermelon (97103) v2cmowmbB476
CmoCh01G006270Wax gourdcmowgoB0574
CmoCh01G006270Cucurbita moschata (Rifu)cmocmoB173
CmoCh01G006270Cucurbita moschata (Rifu)cmocmoB205
CmoCh01G006270Cucurbita moschata (Rifu)cmocmoB354
CmoCh01G006270Cucurbita moschata (Rifu)cmocmoB357
CmoCh01G006270Cucurbita moschata (Rifu)cmocmoB368
CmoCh01G006270Cucurbita moschata (Rifu)cmocmoB375