CSPI01G23000 (gene) Wild cucumber (PI 183967)

Overview
NameCSPI01G23000
Typegene
OrganismCucumis sativus (Wild cucumber (PI 183967))
DescriptionRING/U-box superfamily protein
LocationChr1 : 18667589 .. 18667975 (+)
Genome Viewer
Sequences
The following sequences are available for this feature:

Gene sequence (with intron)

Legend: CDS
Hold the cursor over a type above to highlight its positions in the sequence below.
ATGGTTTTGATGACGGTCTCCATGCTTCTTCTCATTGTGCTATTTTTATTCATTGCCATCTTATGTACAAAACGATCAGCCAAATCTGACGGGGAAGAGTCGTCGGATAATTTGGACATTGAAGCACCGATTTTTCATTACAGCGGAGTTGAAAGCGACGAACAAGAATGTGCGATTTGCCTTTGTGAAATTGAGGAAGGAGAGAAGTGTAGAAAGTTGAAGTCGTGTGGTCATGTGTTTCACAAAGACTGCATTGACCGGTGGTTTAAGGTGAATGGCCATTGTCCAATTTGTCGGACCTCCGTTTGTATGGTAGTCATTGATCACGGTGGAAATGCCATGGCTTCTTCTTCATCTTTACCGACCCCCTTCATCAACCGAATTTAA

mRNA sequence

ATGGTTTTGATGACGGTCTCCATGCTTCTTCTCATTGTGCTATTTTTATTCATTGCCATCTTATGTACAAAACGATCAGCCAAATCTGACGGGGAAGAGTCGTCGGATAATTTGGACATTGAAGCACCGATTTTTCATTACAGCGGAGTTGAAAGCGACGAACAAGAATGTGCGATTTGCCTTTGTGAAATTGAGGAAGGAGAGAAGTGTAGAAAGTTGAAGTCGTGTGGTCATGTGTTTCACAAAGACTGCATTGACCGGTGGTTTAAGGTGAATGGCCATTGTCCAATTTGTCGGACCTCCGTTTGTATGGTAGTCATTGATCACGGTGGAAATGCCATGGCTTCTTCTTCATCTTTACCGACCCCCTTCATCAACCGAATTTAA

Coding sequence (CDS)

ATGGTTTTGATGACGGTCTCCATGCTTCTTCTCATTGTGCTATTTTTATTCATTGCCATCTTATGTACAAAACGATCAGCCAAATCTGACGGGGAAGAGTCGTCGGATAATTTGGACATTGAAGCACCGATTTTTCATTACAGCGGAGTTGAAAGCGACGAACAAGAATGTGCGATTTGCCTTTGTGAAATTGAGGAAGGAGAGAAGTGTAGAAAGTTGAAGTCGTGTGGTCATGTGTTTCACAAAGACTGCATTGACCGGTGGTTTAAGGTGAATGGCCATTGTCCAATTTGTCGGACCTCCGTTTGTATGGTAGTCATTGATCACGGTGGAAATGCCATGGCTTCTTCTTCATCTTTACCGACCCCCTTCATCAACCGAATTTAA
Homology
[Close]
BLAST of CSPI01G23000 vs. Swiss-Prot
Match: ATL64_ARATH (RING-H2 finger protein ATL64 OS=Arabidopsis thaliana GN=ATL64 PE=2 SV=1)

HSP 1 Score: 74.7 bits (182), Expect = 8.2e-13
Identity = 36/86 (41.86%), Postives = 50/86 (58.14%), Query Frame = 1 

Query: 43  PIFHYSGVE----SDEQECAICLCEIEEGEKCRKLKSCGHVFHKDCIDRWFKVNGHCPIC 102
           PIF YS        +++EC++CL E EE ++ R L  CGH FH DCID WF+    CP+C
Sbjct: 90  PIFVYSSKNPPPPEEKEECSVCLSEFEEEDEGRLLPKCGHSFHVDCIDTWFRSRSTCPLC 149

Query: 103 RTSV--CMVVIDHGGNAMASSSSLPT 123
           R  V     VI+ G ++ +S  + PT
Sbjct: 150 RAPVQPPFQVIETGSSSSSSPLTFPT 175

[Close]
BLAST of CSPI01G23000 vs. Swiss-Prot
Match: ATL5_ARATH (RING-H2 finger protein ATL5 OS=Arabidopsis thaliana GN=ATL5 PE=2 SV=1)

HSP 1 Score: 73.2 bits (178), Expect = 2.4e-12
Identity = 33/62 (53.23%), Postives = 40/62 (64.52%), Query Frame = 1 

Query: 43  PIFHYSGV--ESDEQECAICLCEIEEGEKCRKLKSCGHVFHKDCIDRWFKVNGHCPICRT 102
           PIF YS    ES  +EC++CL E EE ++ R L  CGHVFH DCID WF+    CP+CR 
Sbjct: 97  PIFVYSVKTHESPLEECSVCLSEFEEDDEGRVLPKCGHVFHVDCIDTWFRSRSSCPLCRA 156

[Close]
BLAST of CSPI01G23000 vs. Swiss-Prot
Match: ATL32_ARATH (RING-H2 finger protein ATL32 OS=Arabidopsis thaliana GN=ATL32 PE=2 SV=3)

HSP 1 Score: 70.5 bits (171), Expect = 1.5e-11
Identity = 36/87 (41.38%), Postives = 51/87 (58.62%), Query Frame = 1 

Query: 25  RSAKSDGEESSDNLD---IEA-PIFHYSGVE-----SDEQECAICLCEIEEGEKCRKLKS 84
           R+  +DG      LD   +E+ P+F YS V+     S + ECAICL E+E+ E  R L  
Sbjct: 83  RNRANDGSSRRGGLDNAVVESFPVFAYSSVKESKIGSKDLECAICLNELEDHETVRLLPI 142

Query: 85  CGHVFHKDCIDRWFKVNGHCPICRTSV 103
           C H+FH DCID W   +  CP+CR+++
Sbjct: 143 CNHLFHIDCIDTWLYSHATCPVCRSNL 169

[Close]
BLAST of CSPI01G23000 vs. Swiss-Prot
Match: ATL1_ARATH (RING-H2 finger protein ATL1 OS=Arabidopsis thaliana GN=ATL1 PE=2 SV=1)

HSP 1 Score: 70.1 bits (170), Expect = 2.0e-11
Identity = 28/50 (56.00%), Postives = 37/50 (74.00%), Query Frame = 1 

Query: 53  DEQECAICLCEIEEGEKCRKLKSCGHVFHKDCIDRWFKVNGHCPICRTSV 103
           + QEC++CL E +E EK R + +C HVFH DCID W + N +CP+CRTSV
Sbjct: 130 NSQECSVCLNEFQEDEKLRIIPNCCHVFHIDCIDIWLQGNANCPLCRTSV 179

[Close]
BLAST of CSPI01G23000 vs. Swiss-Prot
Match: ATL66_ARATH (RING-H2 finger protein ATL66 OS=Arabidopsis thaliana GN=ATL66 PE=2 SV=1)

HSP 1 Score: 69.3 bits (168), Expect = 3.4e-11
Identity = 26/52 (50.00%), Postives = 34/52 (65.38%), Query Frame = 1 

Query: 51  ESDEQECAICLCEIEEGEKCRKLKSCGHVFHKDCIDRWFKVNGHCPICRTSV 103
           E +E+EC ICL   EEGEK + L  C H +H +C+DRW K    CP+CR S+
Sbjct: 101 EEEEKECCICLGGFEEGEKMKVLPPCSHCYHCECVDRWLKTESSCPLCRVSI 152

[Close]
BLAST of CSPI01G23000 vs. TrEMBL
Match: A0A0A0LUU6_CUCSA (Uncharacterized protein OS=Cucumis sativus GN=Csa_1G512470 PE=4 SV=1)

HSP 1 Score: 248.1 bits (632), Expect = 6.0e-63
Identity = 121/128 (94.53%), Postives = 123/128 (96.09%), Query Frame = 1 

Query: 1   MVLMTVSMLLLIVLFLFIAILCTKRSAKSDGEESSDNLDIEAPIFHYSGVESDEQECAIC 60
           MVLMTVSMLLLIVLFLFIAILCTKRSAK DGEESSDNLDIEAPIFHYSGVE  EQEC IC
Sbjct: 1   MVLMTVSMLLLIVLFLFIAILCTKRSAKYDGEESSDNLDIEAPIFHYSGVEGGEQECVIC 60

Query: 61  LCEIEEGEKCRKLKSCGHVFHKDCIDRWFKVNGHCPICRTSVCMVVIDHGGNAMASSSSL 120
           LCEIEEGEKCRK+K+CGHVFHKDCIDRWFKVNGHCPICRTSVCMVVID GGNAMASSSSL
Sbjct: 61  LCEIEEGEKCRKMKTCGHVFHKDCIDRWFKVNGHCPICRTSVCMVVIDRGGNAMASSSSL 120

Query: 121 PTPFINRI 129
           PTPFINRI
Sbjct: 121 PTPFINRI 128

[Close]
BLAST of CSPI01G23000 vs. TrEMBL
Match: A0A0A0K790_CUCSA (Uncharacterized protein OS=Cucumis sativus GN=Csa_7G387140 PE=4 SV=1)

HSP 1 Score: 233.0 bits (593), Expect = 2.0e-58
Identity = 111/128 (86.72%), Postives = 120/128 (93.75%), Query Frame = 1 

Query: 1   MVLMTVSMLLLIVLFLFIAILCTKRSAKSDGEESSDNLDIEAPIFHYSGVESDEQECAIC 60
           M L+TV MLLLIVLF FI ILC KRSAKSDGEE  +NLDIEAPIFHY+GVE DEQECAIC
Sbjct: 32  MDLLTVPMLLLIVLFSFILILCRKRSAKSDGEELPENLDIEAPIFHYNGVEGDEQECAIC 91

Query: 61  LCEIEEGEKCRKLKSCGHVFHKDCIDRWFKVNGHCPICRTSVCMVVIDHGGNAMASSSSL 120
           LCEIEEGEKCRK+K+CGHVFHKDCIDRWFKV+GHCPICRTSVC+VV+DHGGNAMASSSSL
Sbjct: 92  LCEIEEGEKCRKMKTCGHVFHKDCIDRWFKVDGHCPICRTSVCVVVVDHGGNAMASSSSL 151

Query: 121 PTPFINRI 129
           PTPFIN+I
Sbjct: 152 PTPFINQI 159

[Close]
BLAST of CSPI01G23000 vs. TrEMBL
Match: A0A0A0LY10_CUCSA (Uncharacterized protein OS=Cucumis sativus GN=Csa_1G514470 PE=4 SV=1)

HSP 1 Score: 196.4 bits (498), Expect = 2.1e-47
Identity = 92/124 (74.19%), Postives = 106/124 (85.48%), Query Frame = 1 

Query: 3   LMTVSMLLLIVLFLFIAILCTKRSAKSDGEESSDNLDIEAPIFHYSGVESDEQECAICLC 62
           L+  SM L IVL LFI+ILC KRSAKSD EE  +N+DIEAPIFHY G E  EQ+CAICLC
Sbjct: 24  LLMASMFLSIVLLLFISILCRKRSAKSDVEEFPENVDIEAPIFHYGGDEGGEQDCAICLC 83

Query: 63  EIEEGEKCRKLKSCGHVFHKDCIDRWFKVNGHCPICRTSVCMVVIDHGGNAMASSSSLPT 122
           EIEEGEKCRK+K+CGHVFHKDCI RWFKV+GHCPICRTSVC+VV+D GGNA+ SS+SL  
Sbjct: 84  EIEEGEKCRKMKTCGHVFHKDCIGRWFKVDGHCPICRTSVCVVVVDRGGNAITSSTSLLI 143

Query: 123 PFIN 127
           P++N
Sbjct: 144 PYMN 147

[Close]
BLAST of CSPI01G23000 vs. TrEMBL
Match: A0A0A0LY13_CUCSA (Uncharacterized protein OS=Cucumis sativus GN=Csa_1G521990 PE=4 SV=1)

HSP 1 Score: 194.1 bits (492), Expect = 1.0e-46
Identity = 90/121 (74.38%), Postives = 105/121 (86.78%), Query Frame = 1 

Query: 6   VSMLLLIVLFLFIAILCTKRSAKSDGEESSDNLDIEAPIFHYSGVESDEQECAICLCEIE 65
           VSM L IVL  FI+I+C+KR AKSD EE   N+D+EA +FHY+G E  EQE AICLCEIE
Sbjct: 2   VSMFLPIVLLFFISIVCSKRFAKSDVEELPKNVDLEALVFHYNGDEGGEQEYAICLCEIE 61

Query: 66  EGEKCRKLKSCGHVFHKDCIDRWFKVNGHCPICRTSVCMVVIDHGGNAMASSSSLPTPFI 125
           EGEKCRK+K+CGHVFHKDCIDRWFKV+ HCPICRTSVC+VV+DHGGNAMASS+SLP P++
Sbjct: 62  EGEKCRKMKTCGHVFHKDCIDRWFKVDDHCPICRTSVCVVVVDHGGNAMASSTSLPIPYM 121

Query: 126 N 127
           N
Sbjct: 122 N 122

[Close]
BLAST of CSPI01G23000 vs. TrEMBL
Match: A0A0A0M0G7_CUCSA (Uncharacterized protein OS=Cucumis sativus GN=Csa_1G513470 PE=4 SV=1)

HSP 1 Score: 147.1 bits (370), Expect = 1.4e-32
Identity = 82/128 (64.06%), Postives = 88/128 (68.75%), Query Frame = 1 

Query: 1   MVLMTVSMLLLIVLFLFIAILCTKRSAKSDGEESSDNLDIEAPIFHYSGVESDEQECAIC 60
           MVL+T+SML LIVLFLFI ILCTKRSAK DGEE  +NLDIEAPIFHY GVE  EQE    
Sbjct: 22  MVLLTISMLFLIVLFLFIVILCTKRSAKFDGEELLENLDIEAPIFHYIGVEGSEQEY--- 81

Query: 61  LCEIEEGEKCRKLKSCGHVFHKDCIDRWFKVNGHCPICRTSVCMVVIDHGGNAMASSSSL 120
                                  C DRWFKV+GHCPI RT VC+VV+D GG AMASSSSL
Sbjct: 82  -----------------------CTDRWFKVDGHCPIYRTFVCVVVVDRGGIAMASSSSL 123

Query: 121 PTPFINRI 129
           PTPFINRI
Sbjct: 142 PTPFINRI 123

[Close]
BLAST of CSPI01G23000 vs. TAIR10
Match: AT2G47560.1 (AT2G47560.1 RING/U-box superfamily protein)

HSP 1 Score: 74.7 bits (182), Expect = 4.6e-14
Identity = 36/86 (41.86%), Postives = 50/86 (58.14%), Query Frame = 1 

Query: 43  PIFHYSGVE----SDEQECAICLCEIEEGEKCRKLKSCGHVFHKDCIDRWFKVNGHCPIC 102
           PIF YS        +++EC++CL E EE ++ R L  CGH FH DCID WF+    CP+C
Sbjct: 90  PIFVYSSKNPPPPEEKEECSVCLSEFEEEDEGRLLPKCGHSFHVDCIDTWFRSRSTCPLC 149

Query: 103 RTSV--CMVVIDHGGNAMASSSSLPT 123
           R  V     VI+ G ++ +S  + PT
Sbjct: 150 RAPVQPPFQVIETGSSSSSSPLTFPT 175

[Close]
BLAST of CSPI01G23000 vs. TAIR10
Match: AT3G62690.1 (AT3G62690.1 AtL5)

HSP 1 Score: 73.2 bits (178), Expect = 1.3e-13
Identity = 33/62 (53.23%), Postives = 40/62 (64.52%), Query Frame = 1 

Query: 43  PIFHYSGV--ESDEQECAICLCEIEEGEKCRKLKSCGHVFHKDCIDRWFKVNGHCPICRT 102
           PIF YS    ES  +EC++CL E EE ++ R L  CGHVFH DCID WF+    CP+CR 
Sbjct: 97  PIFVYSVKTHESPLEECSVCLSEFEEDDEGRVLPKCGHVFHVDCIDTWFRSRSSCPLCRA 156

[Close]
BLAST of CSPI01G23000 vs. TAIR10
Match: AT4G40070.1 (AT4G40070.1 RING/U-box superfamily protein)

HSP 1 Score: 70.5 bits (171), Expect = 8.7e-13
Identity = 36/87 (41.38%), Postives = 51/87 (58.62%), Query Frame = 1 

Query: 25  RSAKSDGEESSDNLD---IEA-PIFHYSGVE-----SDEQECAICLCEIEEGEKCRKLKS 84
           R+  +DG      LD   +E+ P+F YS V+     S + ECAICL E+E+ E  R L  
Sbjct: 83  RNRANDGSSRRGGLDNAVVESFPVFAYSSVKESKIGSKDLECAICLNELEDHETVRLLPI 142

Query: 85  CGHVFHKDCIDRWFKVNGHCPICRTSV 103
           C H+FH DCID W   +  CP+CR+++
Sbjct: 143 CNHLFHIDCIDTWLYSHATCPVCRSNL 169

[Close]
BLAST of CSPI01G23000 vs. TAIR10
Match: AT1G04360.1 (AT1G04360.1 RING/U-box superfamily protein)

HSP 1 Score: 70.1 bits (170), Expect = 1.1e-12
Identity = 28/50 (56.00%), Postives = 37/50 (74.00%), Query Frame = 1 

Query: 53  DEQECAICLCEIEEGEKCRKLKSCGHVFHKDCIDRWFKVNGHCPICRTSV 103
           + QEC++CL E +E EK R + +C HVFH DCID W + N +CP+CRTSV
Sbjct: 130 NSQECSVCLNEFQEDEKLRIIPNCCHVFHIDCIDIWLQGNANCPLCRTSV 179

[Close]
BLAST of CSPI01G23000 vs. TAIR10
Match: AT3G11110.1 (AT3G11110.1 RING/U-box superfamily protein)

HSP 1 Score: 69.3 bits (168), Expect = 1.9e-12
Identity = 26/52 (50.00%), Postives = 34/52 (65.38%), Query Frame = 1 

Query: 51  ESDEQECAICLCEIEEGEKCRKLKSCGHVFHKDCIDRWFKVNGHCPICRTSV 103
           E +E+EC ICL   EEGEK + L  C H +H +C+DRW K    CP+CR S+
Sbjct: 101 EEEEKECCICLGGFEEGEKMKVLPPCSHCYHCECVDRWLKTESSCPLCRVSI 152

[Close]
BLAST of CSPI01G23000 vs. NCBI nr
Match: gi|778665201|ref|XP_011648512.1| (PREDICTED: RING-H2 finger protein ATL67-like [Cucumis sativus])

HSP 1 Score: 248.1 bits (632), Expect = 8.6e-63
Identity = 121/128 (94.53%), Postives = 123/128 (96.09%), Query Frame = 1 

Query: 1   MVLMTVSMLLLIVLFLFIAILCTKRSAKSDGEESSDNLDIEAPIFHYSGVESDEQECAIC 60
           MVLMTVSMLLLIVLFLFIAILCTKRSAK DGEESSDNLDIEAPIFHYSGVE  EQEC IC
Sbjct: 22  MVLMTVSMLLLIVLFLFIAILCTKRSAKYDGEESSDNLDIEAPIFHYSGVEGGEQECVIC 81

Query: 61  LCEIEEGEKCRKLKSCGHVFHKDCIDRWFKVNGHCPICRTSVCMVVIDHGGNAMASSSSL 120
           LCEIEEGEKCRK+K+CGHVFHKDCIDRWFKVNGHCPICRTSVCMVVID GGNAMASSSSL
Sbjct: 82  LCEIEEGEKCRKMKTCGHVFHKDCIDRWFKVNGHCPICRTSVCMVVIDRGGNAMASSSSL 141

Query: 121 PTPFINRI 129
           PTPFINRI
Sbjct: 142 PTPFINRI 149

[Close]
BLAST of CSPI01G23000 vs. NCBI nr
Match: gi|700210619|gb|KGN65715.1| (hypothetical protein Csa_1G512470 [Cucumis sativus])

HSP 1 Score: 248.1 bits (632), Expect = 8.6e-63
Identity = 121/128 (94.53%), Postives = 123/128 (96.09%), Query Frame = 1 

Query: 1   MVLMTVSMLLLIVLFLFIAILCTKRSAKSDGEESSDNLDIEAPIFHYSGVESDEQECAIC 60
           MVLMTVSMLLLIVLFLFIAILCTKRSAK DGEESSDNLDIEAPIFHYSGVE  EQEC IC
Sbjct: 1   MVLMTVSMLLLIVLFLFIAILCTKRSAKYDGEESSDNLDIEAPIFHYSGVEGGEQECVIC 60

Query: 61  LCEIEEGEKCRKLKSCGHVFHKDCIDRWFKVNGHCPICRTSVCMVVIDHGGNAMASSSSL 120
           LCEIEEGEKCRK+K+CGHVFHKDCIDRWFKVNGHCPICRTSVCMVVID GGNAMASSSSL
Sbjct: 61  LCEIEEGEKCRKMKTCGHVFHKDCIDRWFKVNGHCPICRTSVCMVVIDRGGNAMASSSSL 120

Query: 121 PTPFINRI 129
           PTPFINRI
Sbjct: 121 PTPFINRI 128

[Close]
BLAST of CSPI01G23000 vs. NCBI nr
Match: gi|778730799|ref|XP_011659858.1| (PREDICTED: E3 ubiquitin-protein ligase ATL9-like [Cucumis sativus])

HSP 1 Score: 237.7 bits (605), Expect = 1.2e-59
Identity = 115/128 (89.84%), Postives = 122/128 (95.31%), Query Frame = 1 

Query: 1   MVLMTVSMLLLIVLFLFIAILCTKRSAKSDGEESSDNLDIEAPIFHYSGVESDEQECAIC 60
           MVL+T+SMLLLIVLFLFIAILCTKRSAKSD EE S+NLDIEAPIFHY+ VE  EQECAIC
Sbjct: 22  MVLLTISMLLLIVLFLFIAILCTKRSAKSDREELSENLDIEAPIFHYNEVEGGEQECAIC 81

Query: 61  LCEIEEGEKCRKLKSCGHVFHKDCIDRWFKVNGHCPICRTSVCMVVIDHGGNAMASSSSL 120
           LCEIEEGEKCRK+K+CGHVFHKDCIDRWFKVNGHCPICRTSVC+VVID GGNAMASSSSL
Sbjct: 82  LCEIEEGEKCRKMKTCGHVFHKDCIDRWFKVNGHCPICRTSVCVVVIDRGGNAMASSSSL 141

Query: 121 PTPFINRI 129
           PTPFINRI
Sbjct: 142 PTPFINRI 149

[Close]
BLAST of CSPI01G23000 vs. NCBI nr
Match: gi|778730386|ref|XP_011659772.1| (PREDICTED: RING-H2 finger protein ATL39-like [Cucumis sativus])

HSP 1 Score: 233.0 bits (593), Expect = 2.9e-58
Identity = 111/128 (86.72%), Postives = 120/128 (93.75%), Query Frame = 1 

Query: 1   MVLMTVSMLLLIVLFLFIAILCTKRSAKSDGEESSDNLDIEAPIFHYSGVESDEQECAIC 60
           M L+TV MLLLIVLF FI ILC KRSAKSDGEE  +NLDIEAPIFHY+GVE DEQECAIC
Sbjct: 22  MDLLTVPMLLLIVLFSFILILCRKRSAKSDGEELPENLDIEAPIFHYNGVEGDEQECAIC 81

Query: 61  LCEIEEGEKCRKLKSCGHVFHKDCIDRWFKVNGHCPICRTSVCMVVIDHGGNAMASSSSL 120
           LCEIEEGEKCRK+K+CGHVFHKDCIDRWFKV+GHCPICRTSVC+VV+DHGGNAMASSSSL
Sbjct: 82  LCEIEEGEKCRKMKTCGHVFHKDCIDRWFKVDGHCPICRTSVCVVVVDHGGNAMASSSSL 141

Query: 121 PTPFINRI 129
           PTPFIN+I
Sbjct: 142 PTPFINQI 149

[Close]
BLAST of CSPI01G23000 vs. NCBI nr
Match: gi|700189546|gb|KGN44779.1| (hypothetical protein Csa_7G387140 [Cucumis sativus])

HSP 1 Score: 233.0 bits (593), Expect = 2.9e-58
Identity = 111/128 (86.72%), Postives = 120/128 (93.75%), Query Frame = 1 

Query: 1   MVLMTVSMLLLIVLFLFIAILCTKRSAKSDGEESSDNLDIEAPIFHYSGVESDEQECAIC 60
           M L+TV MLLLIVLF FI ILC KRSAKSDGEE  +NLDIEAPIFHY+GVE DEQECAIC
Sbjct: 32  MDLLTVPMLLLIVLFSFILILCRKRSAKSDGEELPENLDIEAPIFHYNGVEGDEQECAIC 91

Query: 61  LCEIEEGEKCRKLKSCGHVFHKDCIDRWFKVNGHCPICRTSVCMVVIDHGGNAMASSSSL 120
           LCEIEEGEKCRK+K+CGHVFHKDCIDRWFKV+GHCPICRTSVC+VV+DHGGNAMASSSSL
Sbjct: 92  LCEIEEGEKCRKMKTCGHVFHKDCIDRWFKVDGHCPICRTSVCVVVVDHGGNAMASSSSL 151

Query: 121 PTPFINRI 129
           PTPFIN+I
Sbjct: 152 PTPFINQI 159

The following BLAST results are available for this feature:
BLAST of CSPI01G23000 vs. Swiss-Prot
Match NameE-valueIdentityDescription
ATL64_ARATH8.2e-1341.86RING-H2 finger protein ATL64 OS=Arabidopsis thaliana GN=ATL64 PE=2 SV=1[more]
ATL5_ARATH2.4e-1253.23RING-H2 finger protein ATL5 OS=Arabidopsis thaliana GN=ATL5 PE=2 SV=1[more]
ATL32_ARATH1.5e-1141.38RING-H2 finger protein ATL32 OS=Arabidopsis thaliana GN=ATL32 PE=2 SV=3[more]
ATL1_ARATH2.0e-1156.00RING-H2 finger protein ATL1 OS=Arabidopsis thaliana GN=ATL1 PE=2 SV=1[more]
ATL66_ARATH3.4e-1150.00RING-H2 finger protein ATL66 OS=Arabidopsis thaliana GN=ATL66 PE=2 SV=1[more]
BLAST of CSPI01G23000 vs. TrEMBL
Match NameE-valueIdentityDescription
A0A0A0LUU6_CUCSA6.0e-6394.53Uncharacterized protein OS=Cucumis sativus GN=Csa_1G512470 PE=4 SV=1[more]
A0A0A0K790_CUCSA2.0e-5886.72Uncharacterized protein OS=Cucumis sativus GN=Csa_7G387140 PE=4 SV=1[more]
A0A0A0LY10_CUCSA2.1e-4774.19Uncharacterized protein OS=Cucumis sativus GN=Csa_1G514470 PE=4 SV=1[more]
A0A0A0LY13_CUCSA1.0e-4674.38Uncharacterized protein OS=Cucumis sativus GN=Csa_1G521990 PE=4 SV=1[more]
A0A0A0M0G7_CUCSA1.4e-3264.06Uncharacterized protein OS=Cucumis sativus GN=Csa_1G513470 PE=4 SV=1[more]
BLAST of CSPI01G23000 vs. TAIR10
Match NameE-valueIdentityDescription
AT2G47560.14.6e-1441.86 RING/U-box superfamily protein[more]
AT3G62690.11.3e-1353.23 AtL5[more]
AT4G40070.18.7e-1341.38 RING/U-box superfamily protein[more]
AT1G04360.11.1e-1256.00 RING/U-box superfamily protein[more]
AT3G11110.11.9e-1250.00 RING/U-box superfamily protein[more]
BLAST of CSPI01G23000 vs. NCBI nr
Match NameE-valueIdentityDescription
gi|778665201|ref|XP_011648512.1|8.6e-6394.53PREDICTED: RING-H2 finger protein ATL67-like [Cucumis sativus][more]
gi|700210619|gb|KGN65715.1|8.6e-6394.53hypothetical protein Csa_1G512470 [Cucumis sativus][more]
gi|778730799|ref|XP_011659858.1|1.2e-5989.84PREDICTED: E3 ubiquitin-protein ligase ATL9-like [Cucumis sativus][more]
gi|778730386|ref|XP_011659772.1|2.9e-5886.72PREDICTED: RING-H2 finger protein ATL39-like [Cucumis sativus][more]
gi|700189546|gb|KGN44779.1|2.9e-5886.72hypothetical protein Csa_7G387140 [Cucumis sativus][more]
Annotated Terms
The following terms have been associated with this gene:
Vocabulary: INTERPRO
TermDefinition
IPR001841Znf_RING
IPR013083Znf_RING/FYVE/PHD
Vocabulary: Molecular Function
TermDefinition
GO:0005515protein binding
GO:0008270zinc ion binding
GO Annotation
GO Assignments
This gene is annotated with the following GO terms.
Category Term Accession Term Name
biological_process GO:0008150 biological_process
cellular_component GO:0005575 cellular_component
cellular_component GO:0016021 integral component of membrane
molecular_function GO:0005515 protein binding
molecular_function GO:0008270 zinc ion binding
molecular_function GO:0003674 molecular_function
Relationships

The following mRNA feature(s) are a part of this gene:

Feature NameUnique NameType
CSPI01G23000.1CSPI01G23000.1mRNA


InterPro
Analysis Name: InterPro Annotations of cucumber (PI183967)
Date Performed: 2017-01-17
IPR TermIPR DescriptionSourceSource TermSource DescriptionAlignment
IPR001841Zinc finger, RING-typePFAMPF13639zf-RING_2coord: 55..99
score: 1.2
IPR001841Zinc finger, RING-typeSMARTSM00184ring_2coord: 57..98
score: 7.
IPR001841Zinc finger, RING-typePROFILEPS50089ZF_RING_2coord: 57..99
score: 1
IPR013083Zinc finger, RING/FYVE/PHD-typeGENE3DG3DSA:3.30.40.10coord: 52..102
score: 9.2
NoneNo IPR availablePANTHERPTHR14155RING FINGER DOMAIN-CONTAININGcoord: 1..125
score: 1.4
NoneNo IPR availableunknownSSF57850RING/U-boxcoord: 50..105
score: 9.42

Synteny
The following gene(s) are orthologous to this gene:
GeneOrthologueOrganismBlock
CSPI01G23000Csa1G512470Cucumber (Chinese Long) v2cpicuB001
CSPI01G23000Lsi02G013600Bottle gourd (USVL1VR-Ls)cpilsiB031
CSPI01G23000CsaV3_1G034130Cucumber (Chinese Long) v3cpicucB000
CSPI01G23000CmaCh01G006030Cucurbita maxima (Rimu)cmacpiB430
CSPI01G23000CmoCh01G006270Cucurbita moschata (Rifu)cmocpiB420
CSPI01G23000Cp4.1LG02g13390Cucurbita pepo (Zucchini)cpecpiB536
CSPI01G23000CsGy1G022490Cucumber (Gy14) v2cgybcpiB002
CSPI01G23000Carg12371Silver-seed gourdcarcpiB0476
The following gene(s) are paralogous to this gene:

None

The following block(s) are covering this gene:
GeneOrganismBlock
CSPI01G23000Wax gourdcpiwgoB018
CSPI01G23000Wax gourdcpiwgoB048
CSPI01G23000Wild cucumber (PI 183967)cpicpiB024
CSPI01G23000Wild cucumber (PI 183967)cpicpiB019
CSPI01G23000Wild cucumber (PI 183967)cpicpiB043
CSPI01G23000Cucumber (Gy14) v1cgycpiB053
CSPI01G23000Cucumber (Gy14) v1cgycpiB277
CSPI01G23000Cucurbita maxima (Rimu)cmacpiB220
CSPI01G23000Cucurbita maxima (Rimu)cmacpiB544
CSPI01G23000Cucurbita maxima (Rimu)cmacpiB585
CSPI01G23000Cucurbita maxima (Rimu)cmacpiB696
CSPI01G23000Cucurbita moschata (Rifu)cmocpiB206
CSPI01G23000Cucurbita moschata (Rifu)cmocpiB223
CSPI01G23000Cucurbita moschata (Rifu)cmocpiB573
CSPI01G23000Cucumber (Chinese Long) v2cpicuB028
CSPI01G23000Cucumber (Chinese Long) v2cpicuB032
CSPI01G23000Cucumber (Chinese Long) v2cpicuB047
CSPI01G23000Melon (DHL92) v3.5.1cpimeB003
CSPI01G23000Melon (DHL92) v3.5.1cpimeB008
CSPI01G23000Melon (DHL92) v3.5.1cpimeB025
CSPI01G23000Melon (DHL92) v3.5.1cpimeB065
CSPI01G23000Melon (DHL92) v3.5.1cpimeB084
CSPI01G23000Watermelon (Charleston Gray)cpiwcgB004
CSPI01G23000Watermelon (Charleston Gray)cpiwcgB034
CSPI01G23000Watermelon (Charleston Gray)cpiwcgB050
CSPI01G23000Watermelon (Charleston Gray)cpiwcgB062
CSPI01G23000Watermelon (97103) v1cpiwmB004
CSPI01G23000Watermelon (97103) v1cpiwmB023
CSPI01G23000Watermelon (97103) v1cpiwmB069
CSPI01G23000Watermelon (97103) v1cpiwmB075
CSPI01G23000Cucurbita pepo (Zucchini)cpecpiB267
CSPI01G23000Cucurbita pepo (Zucchini)cpecpiB507
CSPI01G23000Cucurbita pepo (Zucchini)cpecpiB704
CSPI01G23000Bottle gourd (USVL1VR-Ls)cpilsiB002
CSPI01G23000Melon (DHL92) v3.6.1cpimedB007
CSPI01G23000Melon (DHL92) v3.6.1cpimedB024
CSPI01G23000Melon (DHL92) v3.6.1cpimedB057
CSPI01G23000Cucumber (Gy14) v2cgybcpiB097
CSPI01G23000Cucumber (Gy14) v2cgybcpiB159
CSPI01G23000Cucumber (Gy14) v2cgybcpiB252
CSPI01G23000Silver-seed gourdcarcpiB0336
CSPI01G23000Silver-seed gourdcarcpiB0363
CSPI01G23000Silver-seed gourdcarcpiB0415
CSPI01G23000Cucumber (Chinese Long) v3cpicucB032
CSPI01G23000Cucumber (Chinese Long) v3cpicucB037
CSPI01G23000Cucumber (Chinese Long) v3cpicucB055
CSPI01G23000Watermelon (97103) v2cpiwmbB015
CSPI01G23000Watermelon (97103) v2cpiwmbB027
CSPI01G23000Watermelon (97103) v2cpiwmbB044
CSPI01G23000Watermelon (97103) v2cpiwmbB058