Csa1G512470 (gene) Cucumber (Chinese Long) v2 | Cucurbit Genomics Database (CuGenDB)

Overview


Name	Csa1G512470
Type	gene
Organism	Cucumis. sativus (Cucumber (Chinese Long) v2)
Description	Ring finger protein, putative; contains IPR013083 (Zinc finger, RING/FYVE/PHD-type)
Location	Chr1 : 18026098 .. 18026484 (+)

Genome Viewer

Gene Expression

Sequences

The following sequences are available for this feature:

Gene sequence (with intron)

Legend: CDS

Hold the cursor over a type above to highlight its positions in the sequence below.

ATGGTTTTGATGACGGTCTCCATGCTTCTTCTCATTGTGCTATTTTTATTCATTGCCATCTTATGTACAAAACGATCAGCCAAATATGACGGGGAAGAGTCGTCGGATAATTTGGACATTGAAGCACCGATTTTTCATTACAGCGGAGTTGAAGGCGGCGAACAAGAATGTGTGATTTGCCTTTGTGAAATTGAGGAAGGAGAGAAGTGTAGAAAGATGAAGACGTGTGGTCATGTGTTTCACAAAGACTGCATTGACCGGTGGTTTAAGGTGAATGGCCATTGTCCAATTTGCCGGACCTCCGTTTGTATGGTAGTTATTGATCGCGGTGGAAATGCCATGGCTTCTTCTTCATCTTTACCGACCCCCTTCATCAACCGAATTTAA

mRNA sequence

ATGGTTTTGATGACGGTCTCCATGCTTCTTCTCATTGTGCTATTTTTATTCATTGCCATCTTATGTACAAAACGATCAGCCAAATATGACGGGGAAGAGTCGTCGGATAATTTGGACATTGAAGCACCGATTTTTCATTACAGCGGAGTTGAAGGCGGCGAACAAGAATGTGTGATTTGCCTTTGTGAAATTGAGGAAGGAGAGAAGTGTAGAAAGATGAAGACGTGTGGTCATGTGTTTCACAAAGACTGCATTGACCGGTGGTTTAAGGTGAATGGCCATTGTCCAATTTGCCGGACCTCCGTTTGTATGGTAGTTATTGATCGCGGTGGAAATGCCATGGCTTCTTCTTCATCTTTACCGACCCCCTTCATCAACCGAATTTAA

Coding sequence (CDS)

ATGGTTTTGATGACGGTCTCCATGCTTCTTCTCATTGTGCTATTTTTATTCATTGCCATCTTATGTACAAAACGATCAGCCAAATATGACGGGGAAGAGTCGTCGGATAATTTGGACATTGAAGCACCGATTTTTCATTACAGCGGAGTTGAAGGCGGCGAACAAGAATGTGTGATTTGCCTTTGTGAAATTGAGGAAGGAGAGAAGTGTAGAAAGATGAAGACGTGTGGTCATGTGTTTCACAAAGACTGCATTGACCGGTGGTTTAAGGTGAATGGCCATTGTCCAATTTGCCGGACCTCCGTTTGTATGGTAGTTATTGATCGCGGTGGAAATGCCATGGCTTCTTCTTCATCTTTACCGACCCCCTTCATCAACCGAATTTAA

Protein sequence

MVLMTVSMLLLIVLFLFIAILCTKRSAKYDGEESSDNLDIEAPIFHYSGVEGGEQECVICLCEIEEGEKCRKMKTCGHVFHKDCIDRWFKVNGHCPICRTSVCMVVIDRGGNAMASSSSLPTPFINRI*

Homology

[Close]

BLAST of Csa1G512470 vs. Swiss-Prot
Match: ATL9_ARATH (E3 ubiquitin-protein ligase ATL9 OS=Arabidopsis thaliana GN=ATL9 PE=1 SV=1)

HSP 1 Score: 74.3 bits (181), Expect = 1.1e-12
Identity = 43/132 (32.58%), Postives = 63/132 (47.73%), Query Frame = 1


Query: 2   VLMTVSMLLLIVLFL-FIAILCTKRSAKY---------DGEESSD----------NLDIE 61
           V++ +++L L++ F+ F +I C + +A++         D +  S            LD E
Sbjct: 51  VVVVITVLFLVIFFMVFGSIFCRRSNAQFSRSSIFRSTDADAESQVVRIRRLTARGLDAE 110

Query: 62  A----PIFHYSGVEG-----GEQECVICLCEIEEGEKCRKMKTCGHVFHKDCIDRWFKVN 105
           A    P F YS V+      G  EC +CLCE E+ E  R M  C HVFH DC+D W   +
Sbjct: 111 AIETFPTFLYSEVKAVRIGKGGVECAVCLCEFEDDETLRLMPPCCHVFHADCVDVWLSEH 170

[Close]

BLAST of Csa1G512470 vs. Swiss-Prot
Match: ATL64_ARATH (RING-H2 finger protein ATL64 OS=Arabidopsis thaliana GN=ATL64 PE=2 SV=1)

HSP 1 Score: 70.1 bits (170), Expect = 2.0e-11
Identity = 35/86 (40.70%), Postives = 46/86 (53.49%), Query Frame = 1


Query: 43  PIFHYSGVEGG----EQECVICLCEIEEGEKCRKMKTCGHVFHKDCIDRWFKVNGHCPIC 102
           PIF YS         ++EC +CL E EE ++ R +  CGH FH DCID WF+    CP+C
Sbjct: 90  PIFVYSSKNPPPPEEKEECSVCLSEFEEEDEGRLLPKCGHSFHVDCIDTWFRSRSTCPLC 149

Query: 103 RTSV--CMVVIDRGGNAMASSSSLPT 123
           R  V     VI+ G ++ +S  + PT
Sbjct: 150 RAPVQPPFQVIETGSSSSSSPLTFPT 175

[Close]

BLAST of Csa1G512470 vs. Swiss-Prot
Match: ATL67_ARATH (RING-H2 finger protein ATL67 OS=Arabidopsis thaliana GN=ATL67 PE=2 SV=1)

HSP 1 Score: 69.7 bits (169), Expect = 2.6e-11
Identity = 27/50 (54.00%), Postives = 30/50 (60.00%), Query Frame = 1


Query: 52  GGEQECVICLCEIEEGEKCRKMKTCGHVFHKDCIDRWFKVNGHCPICRTS 102
           GG+  C ICLCE +E E  R M  C H FH  C+D W K+NG CP+CR S
Sbjct: 133 GGDTTCSICLCEYKEAEMLRMMPECKHYFHLCCLDAWLKLNGSCPVCRNS 182

[Close]

BLAST of Csa1G512470 vs. Swiss-Prot
Match: ATL5_ARATH (RING-H2 finger protein ATL5 OS=Arabidopsis thaliana GN=ATL5 PE=2 SV=1)

HSP 1 Score: 68.9 bits (167), Expect = 4.5e-11
Identity = 31/62 (50.00%), Postives = 36/62 (58.06%), Query Frame = 1


Query: 43  PIFHYSGV--EGGEQECVICLCEIEEGEKCRKMKTCGHVFHKDCIDRWFKVNGHCPICRT 102
           PIF YS    E   +EC +CL E EE ++ R +  CGHVFH DCID WF+    CP+CR 
Sbjct: 97  PIFVYSVKTHESPLEECSVCLSEFEEDDEGRVLPKCGHVFHVDCIDTWFRSRSSCPLCRA 156

[Close]

BLAST of Csa1G512470 vs. Swiss-Prot
Match: ATL1_ARATH (RING-H2 finger protein ATL1 OS=Arabidopsis thaliana GN=ATL1 PE=2 SV=1)

HSP 1 Score: 68.6 bits (166), Expect = 5.9e-11
Identity = 38/87 (43.68%), Postives = 45/87 (51.72%), Query Frame = 1


Query: 29  YDGEESSDNLDIEA----PIFHYS--GVEGGE-------QECVICLCEIEEGEKCRKMKT 88
           Y   E +  LD  A    P+F +    V  GE       QEC +CL E +E EK R +  
Sbjct: 93  YSPHEVNRGLDESAIRAIPVFKFKKRDVVAGEEDQSKNSQECSVCLNEFQEDEKLRIIPN 152

Query: 89  CGHVFHKDCIDRWFKVNGHCPICRTSV 103
           C HVFH DCID W + N +CP+CRTSV
Sbjct: 153 CCHVFHIDCIDIWLQGNANCPLCRTSV 179

[Close]

BLAST of Csa1G512470 vs. TrEMBL
Match: A0A0A0LUU6_CUCSA (Uncharacterized protein OS=Cucumis sativus GN=Csa_1G512470 PE=4 SV=1)

HSP 1 Score: 269.6 bits (688), Expect = 1.9e-69
Identity = 128/128 (100.00%), Postives = 128/128 (100.00%), Query Frame = 1


Query: 1   MVLMTVSMLLLIVLFLFIAILCTKRSAKYDGEESSDNLDIEAPIFHYSGVEGGEQECVIC 60
           MVLMTVSMLLLIVLFLFIAILCTKRSAKYDGEESSDNLDIEAPIFHYSGVEGGEQECVIC
Sbjct: 1   MVLMTVSMLLLIVLFLFIAILCTKRSAKYDGEESSDNLDIEAPIFHYSGVEGGEQECVIC 60

Query: 61  LCEIEEGEKCRKMKTCGHVFHKDCIDRWFKVNGHCPICRTSVCMVVIDRGGNAMASSSSL 120
           LCEIEEGEKCRKMKTCGHVFHKDCIDRWFKVNGHCPICRTSVCMVVIDRGGNAMASSSSL
Sbjct: 61  LCEIEEGEKCRKMKTCGHVFHKDCIDRWFKVNGHCPICRTSVCMVVIDRGGNAMASSSSL 120

Query: 121 PTPFINRI 129
           PTPFINRI
Sbjct: 121 PTPFINRI 128

[Close]

BLAST of Csa1G512470 vs. TrEMBL
Match: A0A0A0K790_CUCSA (Uncharacterized protein OS=Cucumis sativus GN=Csa_7G387140 PE=4 SV=1)

HSP 1 Score: 235.3 bits (599), Expect = 4.0e-59
Identity = 110/128 (85.94%), Postives = 117/128 (91.41%), Query Frame = 1


Query: 1   MVLMTVSMLLLIVLFLFIAILCTKRSAKYDGEESSDNLDIEAPIFHYSGVEGGEQECVIC 60
           M L+TV MLLLIVLF FI ILC KRSAK DGEE  +NLDIEAPIFHY+GVEG EQEC IC
Sbjct: 32  MDLLTVPMLLLIVLFSFILILCRKRSAKSDGEELPENLDIEAPIFHYNGVEGDEQECAIC 91

Query: 61  LCEIEEGEKCRKMKTCGHVFHKDCIDRWFKVNGHCPICRTSVCMVVIDRGGNAMASSSSL 120
           LCEIEEGEKCRKMKTCGHVFHKDCIDRWFKV+GHCPICRTSVC+VV+D GGNAMASSSSL
Sbjct: 92  LCEIEEGEKCRKMKTCGHVFHKDCIDRWFKVDGHCPICRTSVCVVVVDHGGNAMASSSSL 151

Query: 121 PTPFINRI 129
           PTPFIN+I
Sbjct: 152 PTPFINQI 159

[Close]

BLAST of Csa1G512470 vs. TrEMBL
Match: A0A0A0LY10_CUCSA (Uncharacterized protein OS=Cucumis sativus GN=Csa_1G514470 PE=4 SV=1)

HSP 1 Score: 208.0 bits (528), Expect = 6.9e-51
Identity = 95/124 (76.61%), Postives = 107/124 (86.29%), Query Frame = 1


Query: 3   LMTVSMLLLIVLFLFIAILCTKRSAKYDGEESSDNLDIEAPIFHYSGVEGGEQECVICLC 62
           L+  SM L IVL LFI+ILC KRSAK D EE  +N+DIEAPIFHY G EGGEQ+C ICLC
Sbjct: 24  LLMASMFLSIVLLLFISILCRKRSAKSDVEEFPENVDIEAPIFHYGGDEGGEQDCAICLC 83

Query: 63  EIEEGEKCRKMKTCGHVFHKDCIDRWFKVNGHCPICRTSVCMVVIDRGGNAMASSSSLPT 122
           EIEEGEKCRKMKTCGHVFHKDCI RWFKV+GHCPICRTSVC+VV+DRGGNA+ SS+SL  
Sbjct: 84  EIEEGEKCRKMKTCGHVFHKDCIGRWFKVDGHCPICRTSVCVVVVDRGGNAITSSTSLLI 143

Query: 123 PFIN 127
           P++N
Sbjct: 144 PYMN 147

[Close]

BLAST of Csa1G512470 vs. TrEMBL
Match: A0A0A0LY13_CUCSA (Uncharacterized protein OS=Cucumis sativus GN=Csa_1G521990 PE=4 SV=1)

HSP 1 Score: 199.1 bits (505), Expect = 3.2e-48
Identity = 91/121 (75.21%), Postives = 104/121 (85.95%), Query Frame = 1


Query: 6   VSMLLLIVLFLFIAILCTKRSAKYDGEESSDNLDIEAPIFHYSGVEGGEQECVICLCEIE 65
           VSM L IVL  FI+I+C+KR AK D EE   N+D+EA +FHY+G EGGEQE  ICLCEIE
Sbjct: 2   VSMFLPIVLLFFISIVCSKRFAKSDVEELPKNVDLEALVFHYNGDEGGEQEYAICLCEIE 61

Query: 66  EGEKCRKMKTCGHVFHKDCIDRWFKVNGHCPICRTSVCMVVIDRGGNAMASSSSLPTPFI 125
           EGEKCRKMKTCGHVFHKDCIDRWFKV+ HCPICRTSVC+VV+D GGNAMASS+SLP P++
Sbjct: 62  EGEKCRKMKTCGHVFHKDCIDRWFKVDDHCPICRTSVCVVVVDHGGNAMASSTSLPIPYM 121

Query: 126 N 127
           N
Sbjct: 122 N 122

[Close]

BLAST of Csa1G512470 vs. TrEMBL
Match: A0A0A0M0G7_CUCSA (Uncharacterized protein OS=Cucumis sativus GN=Csa_1G513470 PE=4 SV=1)

HSP 1 Score: 160.2 bits (404), Expect = 1.7e-36
Identity = 84/128 (65.62%), Postives = 91/128 (71.09%), Query Frame = 1


Query: 1   MVLMTVSMLLLIVLFLFIAILCTKRSAKYDGEESSDNLDIEAPIFHYSGVEGGEQECVIC 60
           MVL+T+SML LIVLFLFI ILCTKRSAK+DGEE  +NLDIEAPIFHY GVEG EQE    
Sbjct: 22  MVLLTISMLFLIVLFLFIVILCTKRSAKFDGEELLENLDIEAPIFHYIGVEGSEQEY--- 81

Query: 61  LCEIEEGEKCRKMKTCGHVFHKDCIDRWFKVNGHCPICRTSVCMVVIDRGGNAMASSSSL 120
                                  C DRWFKV+GHCPI RT VC+VV+DRGG AMASSSSL
Sbjct: 82  -----------------------CTDRWFKVDGHCPIYRTFVCVVVVDRGGIAMASSSSL 123

Query: 121 PTPFINRI 129
           PTPFINRI
Sbjct: 142 PTPFINRI 123

[Close]

BLAST of Csa1G512470 vs. TAIR10
Match: AT2G35000.1 (AT2G35000.1 RING/U-box superfamily protein)

HSP 1 Score: 74.3 bits (181), Expect = 6.0e-14
Identity = 43/132 (32.58%), Postives = 63/132 (47.73%), Query Frame = 1


Query: 2   VLMTVSMLLLIVLFL-FIAILCTKRSAKY---------DGEESSD----------NLDIE 61
           V++ +++L L++ F+ F +I C + +A++         D +  S            LD E
Sbjct: 51  VVVVITVLFLVIFFMVFGSIFCRRSNAQFSRSSIFRSTDADAESQVVRIRRLTARGLDAE 110

Query: 62  A----PIFHYSGVEG-----GEQECVICLCEIEEGEKCRKMKTCGHVFHKDCIDRWFKVN 105
           A    P F YS V+      G  EC +CLCE E+ E  R M  C HVFH DC+D W   +
Sbjct: 111 AIETFPTFLYSEVKAVRIGKGGVECAVCLCEFEDDETLRLMPPCCHVFHADCVDVWLSEH 170

[Close]

BLAST of Csa1G512470 vs. TAIR10
Match: AT2G47560.1 (AT2G47560.1 RING/U-box superfamily protein)

HSP 1 Score: 70.1 bits (170), Expect = 1.1e-12
Identity = 35/86 (40.70%), Postives = 46/86 (53.49%), Query Frame = 1


Query: 43  PIFHYSGVEGG----EQECVICLCEIEEGEKCRKMKTCGHVFHKDCIDRWFKVNGHCPIC 102
           PIF YS         ++EC +CL E EE ++ R +  CGH FH DCID WF+    CP+C
Sbjct: 90  PIFVYSSKNPPPPEEKEECSVCLSEFEEEDEGRLLPKCGHSFHVDCIDTWFRSRSTCPLC 149

Query: 103 RTSV--CMVVIDRGGNAMASSSSLPT 123
           R  V     VI+ G ++ +S  + PT
Sbjct: 150 RAPVQPPFQVIETGSSSSSSPLTFPT 175

[Close]

BLAST of Csa1G512470 vs. TAIR10
Match: AT2G46160.1 (AT2G46160.1 RING/U-box superfamily protein)

HSP 1 Score: 69.7 bits (169), Expect = 1.5e-12
Identity = 27/50 (54.00%), Postives = 30/50 (60.00%), Query Frame = 1


Query: 52  GGEQECVICLCEIEEGEKCRKMKTCGHVFHKDCIDRWFKVNGHCPICRTS 102
           GG+  C ICLCE +E E  R M  C H FH  C+D W K+NG CP+CR S
Sbjct: 133 GGDTTCSICLCEYKEAEMLRMMPECKHYFHLCCLDAWLKLNGSCPVCRNS 182

[Close]

BLAST of Csa1G512470 vs. TAIR10
Match: AT3G62690.1 (AT3G62690.1 AtL5)

HSP 1 Score: 68.9 bits (167), Expect = 2.5e-12
Identity = 31/62 (50.00%), Postives = 36/62 (58.06%), Query Frame = 1


Query: 43  PIFHYSGV--EGGEQECVICLCEIEEGEKCRKMKTCGHVFHKDCIDRWFKVNGHCPICRT 102
           PIF YS    E   +EC +CL E EE ++ R +  CGHVFH DCID WF+    CP+CR 
Sbjct: 97  PIFVYSVKTHESPLEECSVCLSEFEEDDEGRVLPKCGHVFHVDCIDTWFRSRSSCPLCRA 156

[Close]

BLAST of Csa1G512470 vs. TAIR10
Match: AT1G04360.1 (AT1G04360.1 RING/U-box superfamily protein)

HSP 1 Score: 68.6 bits (166), Expect = 3.3e-12
Identity = 38/87 (43.68%), Postives = 45/87 (51.72%), Query Frame = 1


Query: 29  YDGEESSDNLDIEA----PIFHYS--GVEGGE-------QECVICLCEIEEGEKCRKMKT 88
           Y   E +  LD  A    P+F +    V  GE       QEC +CL E +E EK R +  
Sbjct: 93  YSPHEVNRGLDESAIRAIPVFKFKKRDVVAGEEDQSKNSQECSVCLNEFQEDEKLRIIPN 152

Query: 89  CGHVFHKDCIDRWFKVNGHCPICRTSV 103
           C HVFH DCID W + N +CP+CRTSV
Sbjct: 153 CCHVFHIDCIDIWLQGNANCPLCRTSV 179

[Close]

BLAST of Csa1G512470 vs. NCBI nr
Match: gi|778665201|ref|XP_011648512.1| (PREDICTED: RING-H2 finger protein ATL67-like [Cucumis sativus])

HSP 1 Score: 269.6 bits (688), Expect = 2.8e-69
Identity = 128/128 (100.00%), Postives = 128/128 (100.00%), Query Frame = 1


Query: 1   MVLMTVSMLLLIVLFLFIAILCTKRSAKYDGEESSDNLDIEAPIFHYSGVEGGEQECVIC 60
           MVLMTVSMLLLIVLFLFIAILCTKRSAKYDGEESSDNLDIEAPIFHYSGVEGGEQECVIC
Sbjct: 22  MVLMTVSMLLLIVLFLFIAILCTKRSAKYDGEESSDNLDIEAPIFHYSGVEGGEQECVIC 81

Query: 61  LCEIEEGEKCRKMKTCGHVFHKDCIDRWFKVNGHCPICRTSVCMVVIDRGGNAMASSSSL 120
           LCEIEEGEKCRKMKTCGHVFHKDCIDRWFKVNGHCPICRTSVCMVVIDRGGNAMASSSSL
Sbjct: 82  LCEIEEGEKCRKMKTCGHVFHKDCIDRWFKVNGHCPICRTSVCMVVIDRGGNAMASSSSL 141

Query: 121 PTPFINRI 129
           PTPFINRI
Sbjct: 142 PTPFINRI 149

[Close]

BLAST of Csa1G512470 vs. NCBI nr
Match: gi|700210619|gb|KGN65715.1| (hypothetical protein Csa_1G512470 [Cucumis sativus])

HSP 1 Score: 269.6 bits (688), Expect = 2.8e-69
Identity = 128/128 (100.00%), Postives = 128/128 (100.00%), Query Frame = 1


Query: 1   MVLMTVSMLLLIVLFLFIAILCTKRSAKYDGEESSDNLDIEAPIFHYSGVEGGEQECVIC 60
           MVLMTVSMLLLIVLFLFIAILCTKRSAKYDGEESSDNLDIEAPIFHYSGVEGGEQECVIC
Sbjct: 1   MVLMTVSMLLLIVLFLFIAILCTKRSAKYDGEESSDNLDIEAPIFHYSGVEGGEQECVIC 60

Query: 61  LCEIEEGEKCRKMKTCGHVFHKDCIDRWFKVNGHCPICRTSVCMVVIDRGGNAMASSSSL 120
           LCEIEEGEKCRKMKTCGHVFHKDCIDRWFKVNGHCPICRTSVCMVVIDRGGNAMASSSSL
Sbjct: 61  LCEIEEGEKCRKMKTCGHVFHKDCIDRWFKVNGHCPICRTSVCMVVIDRGGNAMASSSSL 120

Query: 121 PTPFINRI 129
           PTPFINRI
Sbjct: 121 PTPFINRI 128

[Close]

BLAST of Csa1G512470 vs. NCBI nr
Match: gi|778730799|ref|XP_011659858.1| (PREDICTED: E3 ubiquitin-protein ligase ATL9-like [Cucumis sativus])

HSP 1 Score: 250.4 bits (638), Expect = 1.7e-63
Identity = 118/128 (92.19%), Postives = 123/128 (96.09%), Query Frame = 1


Query: 1   MVLMTVSMLLLIVLFLFIAILCTKRSAKYDGEESSDNLDIEAPIFHYSGVEGGEQECVIC 60
           MVL+T+SMLLLIVLFLFIAILCTKRSAK D EE S+NLDIEAPIFHY+ VEGGEQEC IC
Sbjct: 22  MVLLTISMLLLIVLFLFIAILCTKRSAKSDREELSENLDIEAPIFHYNEVEGGEQECAIC 81

Query: 61  LCEIEEGEKCRKMKTCGHVFHKDCIDRWFKVNGHCPICRTSVCMVVIDRGGNAMASSSSL 120
           LCEIEEGEKCRKMKTCGHVFHKDCIDRWFKVNGHCPICRTSVC+VVIDRGGNAMASSSSL
Sbjct: 82  LCEIEEGEKCRKMKTCGHVFHKDCIDRWFKVNGHCPICRTSVCVVVIDRGGNAMASSSSL 141

Query: 121 PTPFINRI 129
           PTPFINRI
Sbjct: 142 PTPFINRI 149

[Close]

BLAST of Csa1G512470 vs. NCBI nr
Match: gi|778730386|ref|XP_011659772.1| (PREDICTED: RING-H2 finger protein ATL39-like [Cucumis sativus])

HSP 1 Score: 235.3 bits (599), Expect = 5.8e-59
Identity = 110/128 (85.94%), Postives = 117/128 (91.41%), Query Frame = 1


Query: 1   MVLMTVSMLLLIVLFLFIAILCTKRSAKYDGEESSDNLDIEAPIFHYSGVEGGEQECVIC 60
           M L+TV MLLLIVLF FI ILC KRSAK DGEE  +NLDIEAPIFHY+GVEG EQEC IC
Sbjct: 22  MDLLTVPMLLLIVLFSFILILCRKRSAKSDGEELPENLDIEAPIFHYNGVEGDEQECAIC 81

Query: 61  LCEIEEGEKCRKMKTCGHVFHKDCIDRWFKVNGHCPICRTSVCMVVIDRGGNAMASSSSL 120
           LCEIEEGEKCRKMKTCGHVFHKDCIDRWFKV+GHCPICRTSVC+VV+D GGNAMASSSSL
Sbjct: 82  LCEIEEGEKCRKMKTCGHVFHKDCIDRWFKVDGHCPICRTSVCVVVVDHGGNAMASSSSL 141

Query: 121 PTPFINRI 129
           PTPFIN+I
Sbjct: 142 PTPFINQI 149

[Close]

BLAST of Csa1G512470 vs. NCBI nr
Match: gi|700189546|gb|KGN44779.1| (hypothetical protein Csa_7G387140 [Cucumis sativus])

HSP 1 Score: 235.3 bits (599), Expect = 5.8e-59
Identity = 110/128 (85.94%), Postives = 117/128 (91.41%), Query Frame = 1


Query: 1   MVLMTVSMLLLIVLFLFIAILCTKRSAKYDGEESSDNLDIEAPIFHYSGVEGGEQECVIC 60
           M L+TV MLLLIVLF FI ILC KRSAK DGEE  +NLDIEAPIFHY+GVEG EQEC IC
Sbjct: 32  MDLLTVPMLLLIVLFSFILILCRKRSAKSDGEELPENLDIEAPIFHYNGVEGDEQECAIC 91

Query: 61  LCEIEEGEKCRKMKTCGHVFHKDCIDRWFKVNGHCPICRTSVCMVVIDRGGNAMASSSSL 120
           LCEIEEGEKCRKMKTCGHVFHKDCIDRWFKV+GHCPICRTSVC+VV+D GGNAMASSSSL
Sbjct: 92  LCEIEEGEKCRKMKTCGHVFHKDCIDRWFKVDGHCPICRTSVCVVVVDHGGNAMASSSSL 151

Query: 121 PTPFINRI 129
           PTPFIN+I
Sbjct: 152 PTPFINQI 159

The following BLAST results are available for this feature:

BLAST of Csa1G512470 vs. Swiss-Prot


Match Name	E-value	Identity	Description
ATL9_ARATH	1.1e-12	32.58	E3 ubiquitin-protein ligase ATL9 OS=Arabidopsis thaliana GN=ATL9 PE=1 SV=1	[more]
ATL64_ARATH	2.0e-11	40.70	RING-H2 finger protein ATL64 OS=Arabidopsis thaliana GN=ATL64 PE=2 SV=1	[more]
ATL67_ARATH	2.6e-11	54.00	RING-H2 finger protein ATL67 OS=Arabidopsis thaliana GN=ATL67 PE=2 SV=1	[more]
ATL5_ARATH	4.5e-11	50.00	RING-H2 finger protein ATL5 OS=Arabidopsis thaliana GN=ATL5 PE=2 SV=1	[more]
ATL1_ARATH	5.9e-11	43.68	RING-H2 finger protein ATL1 OS=Arabidopsis thaliana GN=ATL1 PE=2 SV=1	[more]

BLAST of Csa1G512470 vs. TrEMBL


Match Name	E-value	Identity	Description
A0A0A0LUU6_CUCSA	1.9e-69	100.00	Uncharacterized protein OS=Cucumis sativus GN=Csa_1G512470 PE=4 SV=1	[more]
A0A0A0K790_CUCSA	4.0e-59	85.94	Uncharacterized protein OS=Cucumis sativus GN=Csa_7G387140 PE=4 SV=1	[more]
A0A0A0LY10_CUCSA	6.9e-51	76.61	Uncharacterized protein OS=Cucumis sativus GN=Csa_1G514470 PE=4 SV=1	[more]
A0A0A0LY13_CUCSA	3.2e-48	75.21	Uncharacterized protein OS=Cucumis sativus GN=Csa_1G521990 PE=4 SV=1	[more]
A0A0A0M0G7_CUCSA	1.7e-36	65.63	Uncharacterized protein OS=Cucumis sativus GN=Csa_1G513470 PE=4 SV=1	[more]

BLAST of Csa1G512470 vs. TAIR10


Match Name	E-value	Identity	Description
AT2G35000.1	6.0e-14	32.58	RING/U-box superfamily protein	[more]
AT2G47560.1	1.1e-12	40.70	RING/U-box superfamily protein	[more]
AT2G46160.1	1.5e-12	54.00	RING/U-box superfamily protein	[more]
AT3G62690.1	2.5e-12	50.00	AtL5	[more]
AT1G04360.1	3.3e-12	43.68	RING/U-box superfamily protein	[more]

BLAST of Csa1G512470 vs. NCBI nr


Match Name	E-value	Identity	Description
gi\|778665201\|ref\|XP_011648512.1\|	2.8e-69	100.00	PREDICTED: RING-H2 finger protein ATL67-like [Cucumis sativus]	[more]
gi\|700210619\|gb\|KGN65715.1\|	2.8e-69	100.00	hypothetical protein Csa_1G512470 [Cucumis sativus]	[more]
gi\|778730799\|ref\|XP_011659858.1\|	1.7e-63	92.19	PREDICTED: E3 ubiquitin-protein ligase ATL9-like [Cucumis sativus]	[more]
gi\|778730386\|ref\|XP_011659772.1\|	5.8e-59	85.94	PREDICTED: RING-H2 finger protein ATL39-like [Cucumis sativus]	[more]
gi\|700189546\|gb\|KGN44779.1\|	5.8e-59	85.94	hypothetical protein Csa_7G387140 [Cucumis sativus]	[more]

Annotated Terms

The following terms have been associated with this gene:

Vocabulary: **INTERPRO**
Term	Definition
IPR001841	Znf_RING
IPR013083	Znf_RING/FYVE/PHD

Vocabulary: **Molecular Function**
Term	Definition
GO:0005515	protein binding
GO:0008270	zinc ion binding

GO Annotation

GO Assignments

This gene is annotated with the following GO terms.

Category	Term Accession	Term Name
biological_process	GO:0008150	biological_process
cellular_component	GO:0005575	cellular_component
cellular_component	GO:0016021	integral component of membrane
molecular_function	GO:0005515	protein binding
molecular_function	GO:0008270	zinc ion binding
molecular_function	GO:0003674	molecular_function

Relationships

The following mRNA feature(s) are a part of this gene:


Feature Name	Unique Name	Type
Csa1G512470.1	Csa1G512470.1	mRNA

InterPro

Analysis Name: InterPro Annotations of cucumber (Chinese Long)
Date Performed: 2016-09-28


IPR Term	IPR Description	Source	Source Term	Source Description	Alignment
IPR001841	Zinc finger, RING-type	PFAM	PF13639	zf-RING_2	coord: 55..99 score: 1.7
IPR001841	Zinc finger, RING-type	SMART	SM00184	ring_2	coord: 57..98 score: 3.
IPR001841	Zinc finger, RING-type	PROFILE	PS50089	ZF_RING_2	coord: 57..99 score: 12
IPR013083	Zinc finger, RING/FYVE/PHD-type	GENE3D	G3DSA:3.30.40.10		coord: 54..102 score: 4.9
None	No IPR available	PANTHER	PTHR14155	RING FINGER DOMAIN-CONTAINING	coord: 1..125 score: 5.3
None	No IPR available	unknown	SSF57850	RING/U-box	coord: 51..105 score: 1.13

Synteny

The following gene(s) are orthologous to this gene:


Gene	Orthologue	Organism	Block
Csa1G512470	Lsi02G013600	Bottle gourd (USVL1VR-Ls)	culsiB030
Csa1G512470	CSPI01G23000	Wild cucumber (PI 183967)	cpicuB001
Csa1G512470	CmaCh01G006030	Cucurbita maxima (Rimu)	cmacuB427
Csa1G512470	CmoCh01G006270	Cucurbita moschata (Rifu)	cmocuB416
Csa1G512470	Cp4.1LG02g13390	Cucurbita pepo (Zucchini)	cpecuB534
Csa1G512470	CsGy1G022490	Cucumber (Gy14) v2	cgybcuB002
Csa1G512470	Carg01043	Silver-seed gourd	carcuB0171
Csa1G512470	Carg12371	Silver-seed gourd	carcuB0471

The following gene(s) are paralogous to this gene:

None

The following block(s) are covering this gene:


Gene	Organism	Block
Csa1G512470	Melon (DHL92) v3.6.1	cumedB023
Csa1G512470	Melon (DHL92) v3.6.1	cumedB007
Csa1G512470	Melon (DHL92) v3.6.1	cumedB058
Csa1G512470	Silver-seed gourd	carcuB0359
Csa1G512470	Silver-seed gourd	carcuB0330
Csa1G512470	Silver-seed gourd	carcuB0412
Csa1G512470	Watermelon (97103) v2	cuwmbB015
Csa1G512470	Watermelon (97103) v2	cuwmbB056
Csa1G512470	Watermelon (97103) v2	cuwmbB027
Csa1G512470	Watermelon (97103) v2	cuwmbB043
Csa1G512470	Wax gourd	cuwgoB018
Csa1G512470	Wax gourd	cuwgoB048
Csa1G512470	Cucumber (Chinese Long) v2	cucuB020
Csa1G512470	Cucumber (Chinese Long) v2	cucuB025
Csa1G512470	Cucumber (Chinese Long) v2	cucuB039
Csa1G512470	Cucumber (Gy14) v1	cgycuB053
Csa1G512470	Cucumber (Gy14) v1	cgycuB267
Csa1G512470	Cucurbita maxima (Rimu)	cmacuB219
Csa1G512470	Cucurbita maxima (Rimu)	cmacuB538
Csa1G512470	Cucurbita maxima (Rimu)	cmacuB580
Csa1G512470	Cucurbita moschata (Rifu)	cmocuB204
Csa1G512470	Cucurbita moschata (Rifu)	cmocuB568
Csa1G512470	Melon (DHL92) v3.5.1	cumeB028
Csa1G512470	Melon (DHL92) v3.5.1	cumeB082
Csa1G512470	Watermelon (Charleston Gray)	cuwcgB004
Csa1G512470	Watermelon (Charleston Gray)	cuwcgB031
Csa1G512470	Watermelon (Charleston Gray)	cuwcgB047
Csa1G512470	Watermelon (97103) v1	cuwmB004
Csa1G512470	Watermelon (97103) v1	cuwmB021
Csa1G512470	Watermelon (97103) v1	cuwmB064
Csa1G512470	Watermelon (97103) v1	cuwmB069
Csa1G512470	Cucurbita pepo (Zucchini)	cpecuB266
Csa1G512470	Cucurbita pepo (Zucchini)	cpecuB507
Csa1G512470	Cucurbita pepo (Zucchini)	cpecuB702
Csa1G512470	Bottle gourd (USVL1VR-Ls)	culsiB001
Csa1G512470	Cucumber (Gy14) v2	cgybcuB099
Csa1G512470	Cucumber (Gy14) v2	cgybcuB156
Csa1G512470	Cucumber (Gy14) v2	cgybcuB244