Carg12371 (gene) Silver-seed gourd

Overview
NameCarg12371
Typegene
OrganismCucurbita argyrosperma (Silver-seed gourd)
DescriptionRING-H2 finger protein ATL66-like
LocationCucurbita_argyrosperma_scaffold_074 : 613186 .. 615452 (+)
Genome Viewer
Sequences
The following sequences are available for this feature:

Gene sequence (with intron)

Legend: polypeptideexonCDS
Hold the cursor over a type above to highlight its positions in the sequence below.
ATGCCGTTGCCGCCGTCTTTTGCCGCTTCACCGCCGCCAATTACCGCCATCGTGGAGACTTACGGACTGAGATGGACGAATAACAATTTGGCTCTGATAGCCATTTGTTTCCTCCTTATACTCTACCTCATCCTCTTAAATTTCTTCAAATCCGAATTAGAATCCGGCAGTGAGCCAGCCGGAGCATTGCCGGTAGTGCGAGAGCCGGAGATTGTACGGATTGAGGCCTCGGTTTTCAGTTACAAGGAAGCCGATGGAGGTCACGACGATGAATGTGCGATTTGCCTTGACGAATTTGAAGATGCCCAAAAGTGCCGGAAGATGAATAACTGTGGCCATATATTCCACCGCCGCTGCATTGACCGGTGGCTCAAGGTGGACCGCCACTGCCCCCTTTGCCGCAGCTGCGTTTGCGTAGTCGTTCATCCATGATAAGATCATCGGAGTTTCTTCGTCGGAGATTATTTTGTTATCTTTGGATTAGTTCAAATGTAAACAAATTAGTGCTTTTTTTTTTTTTCGAAAATTAAATAATATATTTTATTTTTTTTAAATCTCATAAATCTACCGATATTTATTCCAAATCTGGTTCCAATTTTAAATATATATTTCTTATCCAATTAAGTACATCTTAAAAGATTATATTATATCTTCTATCGAGTTAATATGGTAGACTTACTACATTTACTATATAAGTCAAGTTACACTAACCAAAGTTTGTAACTCGCTCAGAACTAAGATCGAGTCGATAATGATTATCATGTGAAATATCAATTTTTTTAATTAATGAATTTATAATGAAAGATTAAATGTTTTGTAGTGTAATCTCAAATTTATTGTATAAGATACATCACTCAGGTGTCTGTGATTTATATCAAATCATTTGTAATTATAAAGAGTGAATAATATTAATAGACTTTACCTAATTTAGGCTTTTTAAGTTATTTTTTTAGTACGATACTCTGTATGTCAACCATATTTAGTTTAAGATTAAAAATATGTTCATATAATGGATAATATTATAATGTTATGTTGTAATTAAAAGTTTAACGGTCCAAATCCACGGCTAACTGATATTGTCCTTTGGCTTTTCCTTTCGAGTTTTCCCTCAAAGTTTTAAACGTGTCTGCTAGGAAAAGGTTTCCGCACTCGCTCTAGGAAAGATTGTTTTGTTCCTTTCAACAACTGATGTGGGACCCCCAATCCACCTTTCCATTCCGAGTTTCCCCTAAGAGTTTTAAAACGCGTGTACTCGGGAGAGGTTTCTACACTCACTCTTATGATGAATGTTTTGTTCCACCCCTTCAAGACCCAGTGTCTTTACTAGCACACCGCCTCGTGTCCACCCCCTTCGAGTCTCATCCTCCTCACTAGCACATCGCTCAGTGTCTGGCTTTGATATCATTTATAACGGCTCAAGTCTATTACTAGCCGATATTGTCCTTTCTAGGCTTTCCCTTACCGTTGTCCTCTCTAGACTTTTCCTTTTAAATTTTAAAACGAGTCGACTAGAGATAGGTTTCTATACTAAATGATTTGTTTACCTCTCGAACTGATATGAGATCTCGCAAACAAAAAAAATCACAATTATGACTTTAAAACATGAATTCTCAGGTTAGAATTGAAAGCCAATTAATGATAAAAATTTGGTCAATAAATAATTTAAATTAATATAAAATGAATTTTGTTGAGGATTTAAAATAATAAAAATTAACTTGTTTTTCAAAAGATAATTTCCTAAAATGAATTAGTAAATCTATAAAACTAAAATTACTTGAAACAAAAATATTGCAAAAGGTACAATCATGCCATCGCCGCCGTCTTCTGCCGCTTGACCGCCGCCAATTAGCAAGATGGTCAACACTTCCGATCTGACATGGGGGGATGAGTATTTAGCTCTGATAGCCGTTTGTACCGTCATTATACTCTACCTCATCGTCTTAAATTGCATCAAATCCAGATACTTCAACGAATCAGATTCCGGCTATGAGGCAGTCGGAGCATTGCCGGAAGTGCGAGCGCCGGTGATTGTACGGATTGAGGCCTCGGTTTTCTGTTACAGGGAAGCCGACGGAGGTCACGGCGCCGAATGCGCGATTTGCCTGGACGGATTTGAAGATGGGCAAAAGTGTCGAATGATGAATAAGTGCGGCCATATATTCCACTGCCGCTGCATTGACCGGTGGCTCAAGGTGGAGTGCCATTGTCCCCTTTGCCGCAGCTGCGTTTGTGCCGTCGTTCATCCATCTTCTTTTCGAAGAAGATGA

mRNA sequence

ATGCCGTTGCCGCCGTCTTTTGCCGCTTCACCGCCGCCAATTACCGCCATCGTGGAGACTTACGGACTGAGATGGACGAATAACAATTTGGCTCTGATAGCCATTTGTTTCCTCCTTATACTCTACCTCATCCTCTTAAATTTCTTCAAATCCGAATTAGAATCCGGCAGTGAGCCAGCCGGAGCATTGCCGGTAGTGCGAGAGCCGGAGATTGTACGGATTGAGGCCTCGGTTTTCAGTTACAAGGAAGCCGATGGAGGTCACGACGATGAATGTGCGATTTGCCTTGACGAATTTGAAGATGCCCAAAAGTGCCGGAAGATGAATAACTGTGGCCATATATTCCACCGCCGCTGCATTGACCGGTGGCTCAAGGTGGACCGCCACTGCCCCCTTTGCCGCAGCTGCGTTTGCGTAGTCATGGTCAACACTTCCGATCTGACATGGGGGGATGAGTATTTAGCTCTGATAGCCGTTTGTACCGTCATTATACTCTACCTCATCGTCTTAAATTGCATCAAATCCAGATACTTCAACGAATCAGATTCCGGCTATGAGGCAGTCGGAGCATTGCCGGAAGTGCGAGCGCCGGTGATTGTACGGATTGAGGCCTCGGTTTTCTGTTACAGGGAAGCCGACGGAGGTCACGGCGCCGAATGCGCGATTTGCCTGGACGGATTTGAAGATGGGCAAAAGTGTCGAATGATGAATAAGTGCGGCCATATATTCCACTGCCGCTGCATTGACCGGTGGCTCAAGGTGGAGTGCCATTGTCCCCTTTGCCGCAGCTGCGTTTGTGCCGTCGTTCATCCATCTTCTTTTCGAAGAAGATGA

Coding sequence (CDS)

ATGCCGTTGCCGCCGTCTTTTGCCGCTTCACCGCCGCCAATTACCGCCATCGTGGAGACTTACGGACTGAGATGGACGAATAACAATTTGGCTCTGATAGCCATTTGTTTCCTCCTTATACTCTACCTCATCCTCTTAAATTTCTTCAAATCCGAATTAGAATCCGGCAGTGAGCCAGCCGGAGCATTGCCGGTAGTGCGAGAGCCGGAGATTGTACGGATTGAGGCCTCGGTTTTCAGTTACAAGGAAGCCGATGGAGGTCACGACGATGAATGTGCGATTTGCCTTGACGAATTTGAAGATGCCCAAAAGTGCCGGAAGATGAATAACTGTGGCCATATATTCCACCGCCGCTGCATTGACCGGTGGCTCAAGGTGGACCGCCACTGCCCCCTTTGCCGCAGCTGCGTTTGCGTAGTCATGGTCAACACTTCCGATCTGACATGGGGGGATGAGTATTTAGCTCTGATAGCCGTTTGTACCGTCATTATACTCTACCTCATCGTCTTAAATTGCATCAAATCCAGATACTTCAACGAATCAGATTCCGGCTATGAGGCAGTCGGAGCATTGCCGGAAGTGCGAGCGCCGGTGATTGTACGGATTGAGGCCTCGGTTTTCTGTTACAGGGAAGCCGACGGAGGTCACGGCGCCGAATGCGCGATTTGCCTGGACGGATTTGAAGATGGGCAAAAGTGTCGAATGATGAATAAGTGCGGCCATATATTCCACTGCCGCTGCATTGACCGGTGGCTCAAGGTGGAGTGCCATTGTCCCCTTTGCCGCAGCTGCGTTTGTGCCGTCGTTCATCCATCTTCTTTTCGAAGAAGATGA

Protein sequence

MPLPPSFAASPPPITAIVETYGLRWTNNNLALIAICFLLILYLILLNFFKSELESGSEPAGALPVVREPEIVRIEASVFSYKEADGGHDDECAICLDEFEDAQKCRKMNNCGHIFHRRCIDRWLKVDRHCPLCRSCVCVVMVNTSDLTWGDEYLALIAVCTVIILYLIVLNCIKSRYFNESDSGYEAVGALPEVRAPVIVRIEASVFCYREADGGHGAECAICLDGFEDGQKCRMMNKCGHIFHCRCIDRWLKVECHCPLCRSCVCAVVHPSSFRRR
Homology
[Close]
BLAST of Carg12371 vs. NCBI nr
Match: XP_022998666.1 (RING-H2 finger protein ATL56-like [Cucurbita maxima])

HSP 1 Score: 285.4 bits (729), Expect = 2.0e-73
Identity = 134/141 (95.04%), Postives = 139/141 (98.58%), Query Frame = 0 

Query: 1   MPLPPSFAASPPPITAIVETYGLRWTNNNLALIAICFLLILYLILLNFFKSELESGSEPA 60
           MPLPPSFAASPPPI+AIV+TYGLRWTNNNLALIAICFL+ILYLILLNFFKSELESGSEPA
Sbjct: 1   MPLPPSFAASPPPISAIVKTYGLRWTNNNLALIAICFLIILYLILLNFFKSELESGSEPA 60

Query: 61  GALPVVREPEIVRIEASVFSYKEADGGHDDECAICLDEFEDAQKCRKMNNCGHIFHRRCI 120
           GALPVVREPEIVRIEASVFSY+EADGGHDDECAICLDEFED QKCRKMN CGHIFHRRCI
Sbjct: 61  GALPVVREPEIVRIEASVFSYREADGGHDDECAICLDEFEDGQKCRKMNKCGHIFHRRCI 120

Query: 121 DRWLKVDRHCPLCRSCVCVVM 142
           DRWLKVDRHCPLCRSCVCVV+
Sbjct: 121 DRWLKVDRHCPLCRSCVCVVV 141

[Close]
BLAST of Carg12371 vs. NCBI nr
Match: XP_023524567.1 (RING-H2 finger protein ATL56-like [Cucurbita pepo subsp. pepo])

HSP 1 Score: 285.0 bits (728), Expect = 2.7e-73
Identity = 134/141 (95.04%), Postives = 139/141 (98.58%), Query Frame = 0 

Query: 1   MPLPPSFAASPPPITAIVETYGLRWTNNNLALIAICFLLILYLILLNFFKSELESGSEPA 60
           MP PPSFAASPPPI+AIVETYGLRWTNNNLA+IAICFL+ILYLILLNFFKSELESGS+PA
Sbjct: 1   MPSPPSFAASPPPISAIVETYGLRWTNNNLAVIAICFLIILYLILLNFFKSELESGSDPA 60

Query: 61  GALPVVREPEIVRIEASVFSYKEADGGHDDECAICLDEFEDAQKCRKMNNCGHIFHRRCI 120
           GALPVVREPEIVRIEASVFSYKEADGGHDDECAICLDEFEDAQKCRKMN CGHIFHRRCI
Sbjct: 61  GALPVVREPEIVRIEASVFSYKEADGGHDDECAICLDEFEDAQKCRKMNKCGHIFHRRCI 120

Query: 121 DRWLKVDRHCPLCRSCVCVVM 142
           DRWLKVDRHCPLCRSCVCVV+
Sbjct: 121 DRWLKVDRHCPLCRSCVCVVV 141

[Close]
BLAST of Carg12371 vs. NCBI nr
Match: XP_023524566.1 (RING-H2 finger protein ATL66-like [Cucurbita pepo subsp. pepo])

HSP 1 Score: 277.3 bits (708), Expect = 5.6e-71
Identity = 130/137 (94.89%), Postives = 130/137 (94.89%), Query Frame = 0 

Query: 141 MVNTSDLTWGDEYLALIAVCTVIILYLIVLNCIKSRYFNESDSGYEAVGALPEVRAPVIV 200
           MVNTS LTWGDEYLALIAVCTVIILYLIVLNCIKSRYFNESDSGYEAVGALP    PVIV
Sbjct: 17  MVNTSGLTWGDEYLALIAVCTVIILYLIVLNCIKSRYFNESDSGYEAVGALP----PVIV 76

Query: 201 RIEASVFCYREADGGHGAECAICLDGFEDGQKCRMMNKCGHIFHCRCIDRWLKVECHCPL 260
           RIEASVFCYREADGGHG ECAICLDGFEDGQKCRMMNKCGHIFHCRCIDRWLKVECHCPL
Sbjct: 77  RIEASVFCYREADGGHGGECAICLDGFEDGQKCRMMNKCGHIFHCRCIDRWLKVECHCPL 136

Query: 261 CRSCVCAVVHPSSFRRR 278
           CRSCVCAVVHPSSF RR
Sbjct: 137 CRSCVCAVVHPSSFWRR 149

[Close]
BLAST of Carg12371 vs. NCBI nr
Match: XP_004151032.1 (PREDICTED: RING-H2 finger protein ATL66 [Cucumis sativus] >KGN65719.1 hypothetical protein Csa_1G515480 [Cucumis sativus])

HSP 1 Score: 129.8 bits (325), Expect = 1.4e-26
Identity = 76/154 (49.35%), Postives = 95/154 (61.69%), Query Frame = 0 

Query: 1   MPLPPSFAASPPP---ITAIVETYGLRWTNNNLALIAICFLLILYLILLNFF------KS 60
           M  PP  AASP P     AI + + L        L AICF +I+Y +   F+      +S
Sbjct: 1   MSPPPYIAASPMPTNGFEAIFDDFEL--------LAAICFAIIVYFLSFTFYFKTGNNES 60

Query: 61  ELESGSEPAGALPVVREPEIVRIEASVFS-YKEADGGHDD---ECAICLDEFEDAQKCRK 120
           E ++G+     LPV RE EIV+IE  VFS Y+EA G  +D   EC ICL++FED QKC+ 
Sbjct: 61  EFDTGT-VEDRLPVFREREIVQIETMVFSYYREAKGSENDDDYECVICLNKFEDGQKCQW 120

Query: 121 MNNCGHIFHRRCIDRWLKVDRHCPLCRSCVCVVM 142
           M  CGHIFH  CIDRWL+ +R CPLCRSCVCVV+
Sbjct: 121 MKKCGHIFHCSCIDRWLRTERECPLCRSCVCVVV 145

[Close]
BLAST of Carg12371 vs. NCBI nr
Match: XP_022155478.1 (RING-H2 finger protein ATL1-like [Momordica charantia])

HSP 1 Score: 128.3 bits (321), Expect = 4.2e-26
Identity = 74/147 (50.34%), Postives = 90/147 (61.22%), Query Frame = 0 

Query: 4   PPSFAASPPPIT---AIVETY---GLRWTNNNLALIAICFLLILYLILLNFFKSEL---E 63
           PPS+ AS P +T   AI   Y   GL   +   A+ AIC + ILY I  + +KS L   E
Sbjct: 3   PPSYTASAPSVTSPSAIGVGYGFLGLSLLDEYFAVTAICVVFILYFIAFSCYKSRLNESE 62

Query: 64  SGSEPAGALPVVREPEIVRIEASVFSYKEADGGHDDECAICLDEFEDAQKCRKMNNCGHI 123
                 GA P VRE E+VRIEAS F+    D G  +EC ICL EF+  +KC  M+ C H+
Sbjct: 63  LSGTAVGAAP-VRELEMVRIEASGFTCGGGDDG--EECVICLTEFKKGEKCWIMSKCCHV 122

Query: 124 FHRRCIDRWLKVDRHCPLCRSCVCVVM 142
           FHR CIDRWLK +RHCPLCRSCVCV +
Sbjct: 123 FHRNCIDRWLKAERHCPLCRSCVCVAV 146

[Close]
BLAST of Carg12371 vs. TAIR10
Match: AT5G17600.1 (RING/U-box superfamily protein)

HSP 1 Score: 73.2 bits (178), Expect = 2.9e-13
Identity = 30/70 (42.86%), Postives = 46/70 (65.71%), Query Frame = 0 

Query: 205 SVFCYREADG-GHGAECAICLDGFEDGQKCRMMNKCGHIFHCRCIDRWLKVECHCPLCRS 264
           +V+ Y+  DG   G++C++CL  FE+ +  R++ KC H FH  CID WLK   +CPLCR+
Sbjct: 126 TVYKYKSGDGFVDGSDCSVCLSEFEENESLRLLPKCNHAFHLPCIDTWLKSHSNCPLCRA 185

Query: 265 CVCAVVHPSS 274
            V  V +P++
Sbjct: 186 FVTGVNNPTA 195

[Close]
BLAST of Carg12371 vs. TAIR10
Match: AT3G11110.1 (RING/U-box superfamily protein)

HSP 1 Score: 69.3 bits (168), Expect = 4.2e-12
Identity = 30/67 (44.78%), Postives = 38/67 (56.72%), Query Frame = 0 

Query: 197 PVIVRIEASVFCYRE-ADGGHGAECAICLDGFEDGQKCRMMNKCGHIFHCRCIDRWLKVE 256
           P  +R    V C RE           ICL GFE+G+K +++  C H +HC C+DRWLK E
Sbjct: 83  PAEIRSLPVVLCRREXXXXXXXXXXXICLGGFEEGEKMKVLPPCSHCYHCECVDRWLKTE 142

Query: 257 CHCPLCR 263
             CPLCR
Sbjct: 143 SSCPLCR 149

[Close]
BLAST of Carg12371 vs. TAIR10
Match: AT4G30370.1 (RING/U-box superfamily protein)

HSP 1 Score: 68.2 bits (165), Expect = 9.3e-12
Identity = 27/67 (40.30%), Postives = 41/67 (61.19%), Query Frame = 0 

Query: 199 IVRIEASVFCYREADGGHGAECAICLDGFEDGQKCRMMNKCGHIFHCRCIDRWLKVECHC 258
           + R+    +C   ++ G G +C +C+DGF  GQ CR + +CGH+FH +C+D WL     C
Sbjct: 95  VKRLPQFKYCEPSSEYG-GDDCVVCIDGFRQGQWCRKLPRCGHVFHRKCVDLWLIKVSTC 154

Query: 259 PLCRSCV 266
           P+CR  V
Sbjct: 155 PICRDRV 160

[Close]
BLAST of Carg12371 vs. TAIR10
Match: AT3G03550.1 (RING/U-box superfamily protein)

HSP 1 Score: 66.6 bits (161), Expect = 2.7e-11
Identity = 26/62 (41.94%), Postives = 41/62 (66.13%), Query Frame = 0 

Query: 205 SVFCYREADG-GHGAECAICLDGFEDGQKCRMMNKCGHIFHCRCIDRWLKVECHCPLCRS 264
           +V+ YR+ DG    ++C++CL  F++ +  R++ KC H FH  CID WLK   +CPLCR+
Sbjct: 143 TVYKYRKMDGFVESSDCSVCLSEFQENESLRLLPKCNHAFHVPCIDTWLKSHSNCPLCRA 202

Query: 265 CV 266
            +
Sbjct: 203 FI 204

[Close]
BLAST of Carg12371 vs. TAIR10
Match: AT1G49200.1 (RING/U-box superfamily protein)

HSP 1 Score: 66.2 bits (160), Expect = 3.5e-11
Identity = 27/51 (52.94%), Postives = 33/51 (64.71%), Query Frame = 0 

Query: 215 GHGAECAICLDGFEDGQKCRMMNKCGHIFHCRCIDRWLKVECHCPLCRSCV 266
           G G EC ICL  F  G++ RM+ KC H FH RCID+WL+    CP CR C+
Sbjct: 131 GLGEECVICLSDFVSGEQIRMLPKCHHGFHVRCIDKWLQQHLTCPKCRHCL 181

[Close]
BLAST of Carg12371 vs. Swiss-Prot
Match: sp|Q9LF64|ATL52_ARATH (RING-H2 finger protein ATL52 OS=Arabidopsis thaliana OX=3702 GN=ATL52 PE=2 SV=1)

HSP 1 Score: 73.2 bits (178), Expect = 5.2e-12
Identity = 30/70 (42.86%), Postives = 46/70 (65.71%), Query Frame = 0 

Query: 205 SVFCYREADG-GHGAECAICLDGFEDGQKCRMMNKCGHIFHCRCIDRWLKVECHCPLCRS 264
           +V+ Y+  DG   G++C++CL  FE+ +  R++ KC H FH  CID WLK   +CPLCR+
Sbjct: 126 TVYKYKSGDGFVDGSDCSVCLSEFEENESLRLLPKCNHAFHLPCIDTWLKSHSNCPLCRA 185

Query: 265 CVCAVVHPSS 274
            V  V +P++
Sbjct: 186 FVTGVNNPTA 195

[Close]
BLAST of Carg12371 vs. Swiss-Prot
Match: sp|Q9SRM0|ATL66_ARATH (RING-H2 finger protein ATL66 OS=Arabidopsis thaliana OX=3702 GN=ATL66 PE=2 SV=1)

HSP 1 Score: 69.3 bits (168), Expect = 7.5e-11
Identity = 30/67 (44.78%), Postives = 38/67 (56.72%), Query Frame = 0 

Query: 197 PVIVRIEASVFCYRE-ADGGHGAECAICLDGFEDGQKCRMMNKCGHIFHCRCIDRWLKVE 256
           P  +R    V C RE           ICL GFE+G+K +++  C H +HC C+DRWLK E
Sbjct: 83  PAEIRSLPVVLCRREXXXXXXXXXXXICLGGFEEGEKMKVLPPCSHCYHCECVDRWLKTE 142

Query: 257 CHCPLCR 263
             CPLCR
Sbjct: 143 SSCPLCR 149

[Close]
BLAST of Carg12371 vs. Swiss-Prot
Match: sp|Q9M0C3|ATL14_ARATH (RING-H2 finger protein ATL14 OS=Arabidopsis thaliana OX=3702 GN=ATL14 PE=2 SV=1)

HSP 1 Score: 68.2 bits (165), Expect = 1.7e-10
Identity = 27/67 (40.30%), Postives = 41/67 (61.19%), Query Frame = 0 

Query: 199 IVRIEASVFCYREADGGHGAECAICLDGFEDGQKCRMMNKCGHIFHCRCIDRWLKVECHC 258
           + R+    +C   ++ G G +C +C+DGF  GQ CR + +CGH+FH +C+D WL     C
Sbjct: 95  VKRLPQFKYCEPSSEYG-GDDCVVCIDGFRQGQWCRKLPRCGHVFHRKCVDLWLIKVSTC 154

Query: 259 PLCRSCV 266
           P+CR  V
Sbjct: 155 PICRDRV 160

[Close]
BLAST of Carg12371 vs. Swiss-Prot
Match: sp|Q7XLY8|ATL41_ORYSJ (E3 ubiquitin-protein ligase Os04g0590900 OS=Oryza sativa subsp. japonica OX=39947 GN=Os04g0590900 PE=2 SV=2)

HSP 1 Score: 68.2 bits (165), Expect = 1.7e-10
Identity = 28/61 (45.90%), Postives = 39/61 (63.93%), Query Frame = 0 

Query: 209 YREADG-GHGAECAICLDGFEDGQKCRMMNKCGHIFHCRCIDRWLKVECHCPLCRSCVCA 268
           YR  DG  H  +C++CL  F DG+  R++ +C H FH +CID WLK   +CPLCR+ +  
Sbjct: 145 YRRGDGFVHTTDCSVCLGEFSDGESLRLLPRCSHAFHQQCIDTWLKSHSNCPLCRANITF 204

[Close]
BLAST of Carg12371 vs. Swiss-Prot
Match: sp|Q9SRQ8|ATL51_ARATH (RING-H2 finger protein ATL51 OS=Arabidopsis thaliana OX=3702 GN=ATL51 PE=2 SV=2)

HSP 1 Score: 66.6 bits (161), Expect = 4.9e-10
Identity = 26/62 (41.94%), Postives = 41/62 (66.13%), Query Frame = 0 

Query: 205 SVFCYREADG-GHGAECAICLDGFEDGQKCRMMNKCGHIFHCRCIDRWLKVECHCPLCRS 264
           +V+ YR+ DG    ++C++CL  F++ +  R++ KC H FH  CID WLK   +CPLCR+
Sbjct: 143 TVYKYRKMDGFVESSDCSVCLSEFQENESLRLLPKCNHAFHVPCIDTWLKSHSNCPLCRA 202

Query: 265 CV 266
            +
Sbjct: 203 FI 204

[Close]
BLAST of Carg12371 vs. TrEMBL
Match: tr|A0A0A0LXE1|A0A0A0LXE1_CUCSA (Uncharacterized protein OS=Cucumis sativus OX=3659 GN=Csa_1G515480 PE=4 SV=1)

HSP 1 Score: 129.8 bits (325), Expect = 9.5e-27
Identity = 76/154 (49.35%), Postives = 95/154 (61.69%), Query Frame = 0 

Query: 1   MPLPPSFAASPPP---ITAIVETYGLRWTNNNLALIAICFLLILYLILLNFF------KS 60
           M  PP  AASP P     AI + + L        L AICF +I+Y +   F+      +S
Sbjct: 1   MSPPPYIAASPMPTNGFEAIFDDFEL--------LAAICFAIIVYFLSFTFYFKTGNNES 60

Query: 61  ELESGSEPAGALPVVREPEIVRIEASVFS-YKEADGGHDD---ECAICLDEFEDAQKCRK 120
           E ++G+     LPV RE EIV+IE  VFS Y+EA G  +D   EC ICL++FED QKC+ 
Sbjct: 61  EFDTGT-VEDRLPVFREREIVQIETMVFSYYREAKGSENDDDYECVICLNKFEDGQKCQW 120

Query: 121 MNNCGHIFHRRCIDRWLKVDRHCPLCRSCVCVVM 142
           M  CGHIFH  CIDRWL+ +R CPLCRSCVCVV+
Sbjct: 121 MKKCGHIFHCSCIDRWLRTERECPLCRSCVCVVV 145

[Close]
BLAST of Carg12371 vs. TrEMBL
Match: tr|A0A1S3C6H7|A0A1S3C6H7_CUCME (RING-H2 finger protein ATL66-like OS=Cucumis melo OX=3656 GN=LOC103497236 PE=4 SV=1)

HSP 1 Score: 121.7 bits (304), Expect = 2.6e-24
Identity = 72/161 (44.72%), Postives = 90/161 (55.90%), Query Frame = 0 

Query: 1   MPLPPSFAASPPPITAIVETYGLRWTNNNLALIAICFLLILYLILLNFF----KSELESG 60
           M  P   AASP P+  I   +     ++   + AICF +I+Y I    +     ++ +S 
Sbjct: 1   MSSPAYIAASPMPMNGIEALF-----DDYDVVAAICFAIIVYFISFTLYFKTGNNDYQSD 60

Query: 61  SEPAGA---LPVVRE------PEIVRIEASVFSYKEA-------DGGHDDECAICLDEFE 120
               G    LP  RE       EIV+IEA VFSY+EA             EC ICL++FE
Sbjct: 61  QSDVGTVEELPAFRERVVRDQQEIVQIEAMVFSYREAKRXXXXXXXXXXXECVICLNKFE 120

Query: 121 DAQKCRKMNNCGHIFHRRCIDRWLKVDRHCPLCRSCVCVVM 142
           DAQKCR M  CGHIFHR CIDRWLK +R CPLCR+CVCVV+
Sbjct: 121 DAQKCRWMKKCGHIFHRSCIDRWLKTERECPLCRTCVCVVV 156

[Close]
BLAST of Carg12371 vs. TrEMBL
Match: tr|A0A0D9VTU4|A0A0D9VTU4_9ORYZ (Uncharacterized protein OS=Leersia perrieri OX=77586 PE=4 SV=1)

HSP 1 Score: 108.6 bits (270), Expect = 2.3e-20
Identity = 70/225 (31.11%), Postives = 97/225 (43.11%), Query Frame = 0 

Query: 91  ECAICLDEFEDAQKCRKMNNCGHIFHRRCIDRWLKVDRHCPLCRSCVCV----------- 150
           ECA+C+ E  D    R +  CGH FH  C+DRW +    CPLCR+ V V           
Sbjct: 131 ECAVCIGELRDGDTGRLLPRCGHRFHAECVDRWFRSHTTCPLCRAAVAVDDGDSGEADPK 190

Query: 151 ---------VMVNTSDLTWGDE-----YLALIAVCTVIILYLIVLNCIKSRYFNESDSGY 210
                      +++  ++ G E     Y AL AV  V +L +    C    Y        
Sbjct: 191 AALAQDLARSQMDSPSISLGGELKFRAYAALAAVGVVSVLAV----CFHRLY-------K 250

Query: 211 EAVGALPEVRAPVIVRIEAS----------------VFCYREADGGHGAECAICLDGFED 270
             V A P+   P++V    +                VF +  A      ECA+CL    D
Sbjct: 251 LTVSARPQDMLPIVVASGGAGTGKAALGKEDISALPVFVHVAAGEAAAVECAVCLGEVRD 310

Query: 271 GQKCRMMNKCGHIFHCRCIDRWLKVECHCPLCRSCV-CAVVHPSS 274
           G++ R++ +CGH FH  CIDRW +    CPLCR+ V  AV  PS+
Sbjct: 311 GERGRLLPRCGHRFHVECIDRWFQANSTCPLCRAAVDVAVGEPSA 344

[Close]
BLAST of Carg12371 vs. TrEMBL
Match: tr|A0A1E5W0A7|A0A1E5W0A7_9POAL (Uncharacterized protein OS=Dichanthelium oligosanthes OX=888268 GN=BAE44_0008168 PE=4 SV=1)

HSP 1 Score: 106.7 bits (265), Expect = 8.6e-20
Identity = 70/229 (30.57%), Postives = 96/229 (41.92%), Query Frame = 0 

Query: 62  ALPVVREPEIVRIEASVFSYKEADGGHDD----ECAICLDEFEDAQKCRKMNNCGHIFHR 121
           A   +R+ E+  +   V     AD G       ECA+CL E  D ++ R +  CGH FH 
Sbjct: 11  ASKALRKREMAALPVFVHVAAVADNGGAASSALECAVCLAEMRDGERGRLLPRCGHRFHV 70

Query: 122 RCIDRWLKVDRHCPLCRSCVCVV-----MVNTSDLTWGDEYLALIAVCTVIILYLIVLNC 181
            CIDRW + +  CP+CR+    V        +S L  GD    L AV   + L   +  C
Sbjct: 71  ECIDRWFRANFTCPICRAAAVGVHKPSSSSYSSSLLDGDLRFDLYAVLVALGLVSFLAVC 130

Query: 182 IKSRYFNESDSGYEAVGALPEVRAPVIVR------------------IEASVFCYREADG 241
               Y          V A P+   PV+                    + A        D 
Sbjct: 131 FWRLY-------RLTVSARPQDMLPVVAATLPPCAGAEGKAALRQKDVAALPVFVHGGDE 190

Query: 242 GHGAECAICLDGFEDGQKCRMMNKCGHIFHCRCIDRWLKVECHCPLCRS 264
               ECA+CL   EDG++ R++  CGH FH  CIDRW +    CP+CR+
Sbjct: 191 AAAVECAVCLAEMEDGERGRLLPACGHRFHVDCIDRWFRANSTCPVCRA 232

[Close]
BLAST of Carg12371 vs. TrEMBL
Match: tr|A0A0A0K790|A0A0A0K790_CUCSA (Uncharacterized protein OS=Cucumis sativus OX=3659 GN=Csa_7G387140 PE=4 SV=1)

HSP 1 Score: 106.7 bits (265), Expect = 8.6e-20
Identity = 59/142 (41.55%), Postives = 81/142 (57.04%), Query Frame = 0 

Query: 3   LPPSFAASPPPITAIVETYGLRWTNNNLALIAICFLLILY-LILLNFFKSELESGSEPAG 62
           LP     SP PI ++     L     +L  + +  L++L+  IL+   K   +S  E   
Sbjct: 7   LPSLMPLSPSPIPSLHSLILLPGFIMDLLTVPMLLLIVLFSFILILCRKRSAKSDGEEL- 66

Query: 63  ALPVVREPEIVRIEASVFSYKEADGGHDDECAICLDEFEDAQKCRKMNNCGHIFHRRCID 122
                  PE + IEA +F Y   + G + ECAICL E E+ +KCRKM  CGH+FH+ CID
Sbjct: 67  -------PENLDIEAPIFHYNGVE-GDEQECAICLCEIEEGEKCRKMKTCGHVFHKDCID 126

Query: 123 RWLKVDRHCPLCRSCVCVVMVN 144
           RW KVD HCP+CR+ VCVV+V+
Sbjct: 127 RWFKVDGHCPICRTSVCVVVVD 139

The following BLAST results are available for this feature:
BLAST of Carg12371 vs. NCBI nr
Match NameE-valueIdentityDescription
XP_022998666.12.0e-7395.04RING-H2 finger protein ATL56-like [Cucurbita maxima][more]
XP_023524567.12.7e-7395.04RING-H2 finger protein ATL56-like [Cucurbita pepo subsp. pepo][more]
XP_023524566.15.6e-7194.89RING-H2 finger protein ATL66-like [Cucurbita pepo subsp. pepo][more]
XP_004151032.11.4e-2649.35PREDICTED: RING-H2 finger protein ATL66 [Cucumis sativus] >KGN65719.1 hypothetic... [more]
XP_022155478.14.2e-2650.34RING-H2 finger protein ATL1-like [Momordica charantia][more]
BLAST of Carg12371 vs. TAIR10
Match NameE-valueIdentityDescription
AT5G17600.12.9e-1342.86RING/U-box superfamily protein[more]
AT3G11110.14.2e-1244.78RING/U-box superfamily protein[more]
AT4G30370.19.3e-1240.30RING/U-box superfamily protein[more]
AT3G03550.12.7e-1141.94RING/U-box superfamily protein[more]
AT1G49200.13.5e-1152.94RING/U-box superfamily protein[more]
BLAST of Carg12371 vs. Swiss-Prot
Match NameE-valueIdentityDescription
sp|Q9LF64|ATL52_ARATH5.2e-1242.86RING-H2 finger protein ATL52 OS=Arabidopsis thaliana OX=3702 GN=ATL52 PE=2 SV=1[more]
sp|Q9SRM0|ATL66_ARATH7.5e-1144.78RING-H2 finger protein ATL66 OS=Arabidopsis thaliana OX=3702 GN=ATL66 PE=2 SV=1[more]
sp|Q9M0C3|ATL14_ARATH1.7e-1040.30RING-H2 finger protein ATL14 OS=Arabidopsis thaliana OX=3702 GN=ATL14 PE=2 SV=1[more]
sp|Q7XLY8|ATL41_ORYSJ1.7e-1045.90E3 ubiquitin-protein ligase Os04g0590900 OS=Oryza sativa subsp. japonica OX=3994... [more]
sp|Q9SRQ8|ATL51_ARATH4.9e-1041.94RING-H2 finger protein ATL51 OS=Arabidopsis thaliana OX=3702 GN=ATL51 PE=2 SV=2[more]
BLAST of Carg12371 vs. TrEMBL
Match NameE-valueIdentityDescription
tr|A0A0A0LXE1|A0A0A0LXE1_CUCSA9.5e-2749.35Uncharacterized protein OS=Cucumis sativus OX=3659 GN=Csa_1G515480 PE=4 SV=1[more]
tr|A0A1S3C6H7|A0A1S3C6H7_CUCME2.6e-2444.72RING-H2 finger protein ATL66-like OS=Cucumis melo OX=3656 GN=LOC103497236 PE=4 S... [more]
tr|A0A0D9VTU4|A0A0D9VTU4_9ORYZ2.3e-2031.11Uncharacterized protein OS=Leersia perrieri OX=77586 PE=4 SV=1[more]
tr|A0A1E5W0A7|A0A1E5W0A7_9POAL8.6e-2030.57Uncharacterized protein OS=Dichanthelium oligosanthes OX=888268 GN=BAE44_0008168... [more]
tr|A0A0A0K790|A0A0A0K790_CUCSA8.6e-2041.55Uncharacterized protein OS=Cucumis sativus OX=3659 GN=Csa_7G387140 PE=4 SV=1[more]
Annotated Terms
The following terms have been associated with this gene:
Vocabulary: INTERPRO
TermDefinition
IPR013083Znf_RING/FYVE/PHD
IPR001841Znf_RING
GO Annotation
GO Assignments
This gene is annotated with the following GO terms.
Category Term Accession Term Name
biological_process GO:0008150 biological_process
cellular_component GO:0005575 cellular_component
molecular_function GO:0003674 molecular_function
Relationships

The following mRNA feature(s) are a part of this gene:

Feature NameUnique NameType
Carg12371-RACarg12371-RAmRNA


InterPro
Analysis Name: InterPro Annotations of silver-seed gourd
Date Performed: 2019-03-07
IPR TermIPR DescriptionSourceSource TermSource DescriptionAlignment
IPR001841Zinc finger, RING-typeSMARTSM00184ring_2coord: 220..261
e-value: 3.3E-5
score: 33.3
coord: 92..133
e-value: 2.5E-7
score: 40.4
IPR001841Zinc finger, RING-typePFAMPF13639zf-RING_2coord: 90..134
e-value: 8.4E-15
score: 54.7
coord: 219..262
e-value: 4.8E-12
score: 45.9
IPR001841Zinc finger, RING-typePROSITEPS50089ZF_RING_2coord: 92..134
score: 13.581
IPR001841Zinc finger, RING-typePROSITEPS50089ZF_RING_2coord: 220..262
score: 12.681
IPR013083Zinc finger, RING/FYVE/PHD-typeGENE3DG3DSA:3.30.40.10coord: 61..138
e-value: 2.0E-19
score: 71.0
coord: 189..266
e-value: 4.0E-15
score: 57.2
NoneNo IPR availablePANTHERPTHR22765RING FINGER AND PROTEASE ASSOCIATED DOMAIN-CONTAININGcoord: 157..268
coord: 35..140
NoneNo IPR availableSUPERFAMILYSSF57850RING/U-boxcoord: 79..141
NoneNo IPR availableSUPERFAMILYSSF57850RING/U-boxcoord: 208..267

Synteny
The following gene(s) are orthologous to this gene:
GeneOrthologueOrganismBlock
Carg12371Cla008240Watermelon (97103) v1carwmB0440
Carg12371Csa1G512470Cucumber (Chinese Long) v2carcuB0471
Carg12371MELO3C020632Melon (DHL92) v3.5.1carmeB0449
Carg12371ClCG03G001490Watermelon (Charleston Gray)carwcgB0436
Carg12371CSPI01G23000Wild cucumber (PI 183967)carcpiB0476
Carg12371Cucsa.117910Cucumber (Gy14) v1carcgyB0507
Carg12371CmaCh01G006030Cucurbita maxima (Rimu)carcmaB0613
Carg12371CmoCh01G006270Cucurbita moschata (Rifu)carcmoB0596
Carg12371Lsi02G013580Bottle gourd (USVL1VR-Ls)carlsiB403
Carg12371Cp4.1LG20g08610Cucurbita pepo (Zucchini)carcpeB0620
Carg12371Cp4.1LG02g13390Cucurbita pepo (Zucchini)carcpeB0622
Carg12371CsGy1G022490Cucumber (Gy14) v2carcgybB0448
Carg12371MELO3C035276.2Melon (DHL92) v3.6.1carmedB0451
Carg12371CsaV3_1G034130Cucumber (Chinese Long) v3carcucB0472
Carg12371Cla97C03G052440Watermelon (97103) v2carwmbB0467
Carg12371Bhi08G000520Wax gourdcarwgoB0535
The following gene(s) are paralogous to this gene:
GeneParalogueOrganismBlock
Carg12371Carg20658Silver-seed gourdcarcarB408
The following block(s) are covering this gene:
GeneOrganismBlock
Carg12371Wax gourdcarwgoB0529
Carg12371Silver-seed gourdcarcarB192
Carg12371Silver-seed gourdcarcarB332
Carg12371Silver-seed gourdcarcarB353
Carg12371Silver-seed gourdcarcarB449
Carg12371Cucumber (Gy14) v2carcgybB0453
Carg12371Cucumber (Gy14) v2carcgybB0452
Carg12371Cucumber (Gy14) v2carcgybB0450
Carg12371Cucumber (Gy14) v1carcgyB0510
Carg12371Cucurbita maxima (Rimu)carcmaB0610
Carg12371Cucurbita maxima (Rimu)carcmaB0612
Carg12371Cucurbita maxima (Rimu)carcmaB0615
Carg12371Cucurbita maxima (Rimu)carcmaB0618
Carg12371Cucurbita moschata (Rifu)carcmoB0594
Carg12371Cucurbita moschata (Rifu)carcmoB0595
Carg12371Cucurbita moschata (Rifu)carcmoB0598
Carg12371Cucurbita moschata (Rifu)carcmoB0601
Carg12371Cucurbita pepo (Zucchini)carcpeB0617
Carg12371Cucurbita pepo (Zucchini)carcpeB0619
Carg12371Cucurbita pepo (Zucchini)carcpeB0624
Carg12371Wild cucumber (PI 183967)carcpiB0481
Carg12371Wild cucumber (PI 183967)carcpiB0478
Carg12371Cucumber (Chinese Long) v2carcuB0473
Carg12371Cucumber (Chinese Long) v2carcuB0475
Carg12371Cucumber (Chinese Long) v3carcucB0475
Carg12371Cucumber (Chinese Long) v3carcucB0477
Carg12371Melon (DHL92) v3.5.1carmeB0446
Carg12371Bottle gourd (USVL1VR-Ls)carlsiB400
Carg12371Bottle gourd (USVL1VR-Ls)carlsiB405
Carg12371Melon (DHL92) v3.5.1carmeB0450
Carg12371Melon (DHL92) v3.6.1carmedB0448
Carg12371Melon (DHL92) v3.6.1carmedB0453
Carg12371Watermelon (Charleston Gray)carwcgB0431
Carg12371Watermelon (Charleston Gray)carwcgB0435
Carg12371Watermelon (97103) v1carwmB0438
Carg12371Watermelon (97103) v1carwmB0441
Carg12371Watermelon (97103) v1carwmB0444
Carg12371Watermelon (97103) v2carwmbB0463
Carg12371Watermelon (97103) v2carwmbB0466