CmaCh17G009670 (gene) Cucurbita maxima (Rimu) | Cucurbit Genomics Database (CuGenDB)

Overview


Name	CmaCh17G009670
Type	gene
Organism	Cucurbita maxima (Cucurbita maxima (Rimu))
Description	Coffea canephora DH200=94 genomic scaffold, scaffold_377
Location	Cma_Chr17 : 7174738 .. 7174989 (-)

Genome Viewer

Gene Expression

Sequences

The following sequences are available for this feature:

Gene sequence (with intron)

Legend: CDSexon

Hold the cursor over a type above to highlight its positions in the sequence below.

ATGGGGAAGTTTGTCGAGATTCTCGACGCTGGCGTCAGGATTGTCGCCAGATTTCATTCGCATTGTCCTCAGACTGCTAGGATGTACTACCATCCGCCGGCTAACTCCAACGAAGGCCACCACTCCGACCTCCAGGAGTTTCGTCTTAGCAGCGGCGATGTGTCGTCTCATCAGATTGTTCCTTGCAGTGCCGCGGCCGCCGTTGTAGCCGTCAGCGCTGAGAGTACTGATTTCTTTCTTTACTCCGTTTGA

mRNA sequence

ATGGGGAAGTTTGTCGAGATTCTCGACGCTGGCGTCAGGATTGTCGCCAGATTTCATTCGCATTGTCCTCAGACTGCTAGGATGTACTACCATCCGCCGGCTAACTCCAACGAAGGCCACCACTCCGACCTCCAGGAGTTTCGTCTTAGCAGCGGCGATGTGTCGTCTCATCAGATTGTTCCTTGCAGTGCCGCGGCCGCCGTTGTAGCCGTCAGCGCTGAGAGTACTGATTTCTTTCTTTACTCCGTTTGA

Coding sequence (CDS)

ATGGGGAAGTTTGTCGAGATTCTCGACGCTGGCGTCAGGATTGTCGCCAGATTTCATTCGCATTGTCCTCAGACTGCTAGGATGTACTACCATCCGCCGGCTAACTCCAACGAAGGCCACCACTCCGACCTCCAGGAGTTTCGTCTTAGCAGCGGCGATGTGTCGTCTCATCAGATTGTTCCTTGCAGTGCCGCGGCCGCCGTTGTAGCCGTCAGCGCTGAGAGTACTGATTTCTTTCTTTACTCCGTTTGA

Protein sequence

MGKFVEILDAGVRIVARFHSHCPQTARMYYHPPANSNEGHHSDLQEFRLSSGDVSSHQIVPCSAAAAVVAVSAESTDFFLYSV

Homology

[Close]

BLAST of CmaCh17G009670 vs. TrEMBL
Match: A0A0A0K6I8_CUCSA (Uncharacterized protein OS=Cucumis sativus GN=Csa_7G426490 PE=4 SV=1)

HSP 1 Score: 119.0 bits (297), Expect = 2.7e-24
Identity = 63/93 (67.74%), Postives = 71/93 (76.34%), Query Frame = 1


Query: 1  MGKFVEILDAGVRIVARFHSHCPQTARMYYHPPANSNEGHHSDLQEFRL----SSGDVSS 60
          MGK VEILDAG RIVARFHSHCPQT RMYYHPPANS++GHHS  +EFRL      GD +S
Sbjct: 1  MGKLVEILDAGARIVARFHSHCPQTGRMYYHPPANSDDGHHS--EEFRLGGGVGDGDAAS 60

Query: 61 HQIVPC------SAAAAVVAVSAESTDFFLYSV 84
          HQIVPC      +AAAAV+ V+ ES +F LYSV
Sbjct: 61 HQIVPCVAEPTAAAAAAVLVVTVESNEFILYSV 91

[Close]

BLAST of CmaCh17G009670 vs. TrEMBL
Match: W9R4I1_9ROSA (Uncharacterized protein OS=Morus notabilis GN=L484_004679 PE=4 SV=1)

HSP 1 Score: 91.3 bits (225), Expect = 6.1e-16
Identity = 45/83 (54.22%), Postives = 54/83 (65.06%), Query Frame = 1


Query: 1  MGKFVEILDAGVRIVARFHSHCPQTARMYYHPPANSNEGHHSDLQEFRLSSGDVSSHQIV 60
          MGKFVEILD GVRIVARFHSHCPQT+RMYYHPPAN++  HH++   F    GD     + 
Sbjct: 1  MGKFVEILDQGVRIVARFHSHCPQTSRMYYHPPANADNNHHNN-NHFLFYGGDGGDGDVK 60

Query: 61 PCSAAAAVVAVSAESTDFFLYSV 84
                  +   AE+ +F LYSV
Sbjct: 61 VMKCGPKAIGGGAENKEFILYSV 82

[Close]

BLAST of CmaCh17G009670 vs. TrEMBL
Match: A0A061EVZ9_THECC (Uncharacterized protein OS=Theobroma cacao GN=TCM_024641 PE=4 SV=1)

HSP 1 Score: 88.6 bits (218), Expect = 3.9e-15
Identity = 48/87 (55.17%), Postives = 56/87 (64.37%), Query Frame = 1


Query: 1  MGKFVEILDAGVRIVARFHSHCPQTARMYYHPPANSNEGHHSDLQEFRLSSGDVSSHQ-- 60
          MGK++E+LDAGVRI ARFHSHCPQTAR+YYHPP+N  EGHH    E R  SG     Q  
Sbjct: 1  MGKYMELLDAGVRIAARFHSHCPQTARLYYHPPSNP-EGHHDYHHEARAGSGSTGQVQDP 60

Query: 61 --IVPCSAAAAVVAVSAESTDFFLYSV 84
            ++ C A A   A   EST+   YSV
Sbjct: 61 TLVLSCGAKA---AKGLESTELIFYSV 83

[Close]

BLAST of CmaCh17G009670 vs. TrEMBL
Match: A0A067GUE6_CITSI (Uncharacterized protein OS=Citrus sinensis GN=CISIN_1g044255mg PE=4 SV=1)

HSP 1 Score: 87.4 bits (215), Expect = 8.8e-15
Identity = 43/83 (51.81%), Postives = 58/83 (69.88%), Query Frame = 1


Query: 1  MGKFVEILDAGVRIVARFHSHCPQTARMYYHPPANSNEGHHSDLQEFRLSSGDVSSHQIV 60
          MGK+ EILDAGVRI ARFHSHCP TAR+YYHPPAN ++ H+        ++GDVSS ++V
Sbjct: 2  MGKYAEILDAGVRIAARFHSHCPHTARLYYHPPANHDDQHYDHQDVAGFATGDVSS-RVV 61

Query: 61 PCSAAAAVVAVSAESTDFFLYSV 84
              + A + +  ++ DF L+SV
Sbjct: 62 VFGGSEANMKMGIDAKDFILFSV 83

[Close]

BLAST of CmaCh17G009670 vs. TrEMBL
Match: V4SWE7_9ROSI (Uncharacterized protein OS=Citrus clementina GN=CICLE_v10033218mg PE=4 SV=1)

HSP 1 Score: 86.3 bits (212), Expect = 2.0e-14
Identity = 42/83 (50.60%), Postives = 58/83 (69.88%), Query Frame = 1


Query: 1  MGKFVEILDAGVRIVARFHSHCPQTARMYYHPPANSNEGHHSDLQEFRLSSGDVSSHQIV 60
          MGK+ EILDAGVRI ARFHSHCP TAR+YYHPPAN ++ H+        ++GDVSS ++V
Sbjct: 2  MGKYAEILDAGVRIAARFHSHCPHTARLYYHPPANHDDQHYDHQDVAGFATGDVSS-RVV 61

Query: 61 PCSAAAAVVAVSAESTDFFLYSV 84
              + + + +  ++ DF L+SV
Sbjct: 62 VFGGSESNMKMGIDTKDFILFSV 83

[Close]

BLAST of CmaCh17G009670 vs. TAIR10
Match: AT3G57450.1 (AT3G57450.1 unknown protein)

HSP 1 Score: 73.2 bits (178), Expect = 8.7e-14
Identity = 33/58 (56.90%), Postives = 42/58 (72.41%), Query Frame = 1


Query: 1  MGKFVEILDAGVRIVARFHSHCPQTARMYYHPPANSNEGHHSDLQEFRLSSGDVSSHQ 59
          MGK+ E+LD GVRI ARFHSHCPQTAR+YYHPP++ N  HH  +++     G + S Q
Sbjct: 1  MGKYTEMLDVGVRIAARFHSHCPQTARLYYHPPSD-NHHHHGGVKDLIGGGGVLGSGQ 57

[Close]

BLAST of CmaCh17G009670 vs. NCBI nr
Match: gi|700189875|gb|KGN45108.1| (hypothetical protein Csa_7G426490 [Cucumis sativus])

HSP 1 Score: 119.0 bits (297), Expect = 3.9e-24
Identity = 63/93 (67.74%), Postives = 71/93 (76.34%), Query Frame = 1


Query: 1  MGKFVEILDAGVRIVARFHSHCPQTARMYYHPPANSNEGHHSDLQEFRL----SSGDVSS 60
          MGK VEILDAG RIVARFHSHCPQT RMYYHPPANS++GHHS  +EFRL      GD +S
Sbjct: 1  MGKLVEILDAGARIVARFHSHCPQTGRMYYHPPANSDDGHHS--EEFRLGGGVGDGDAAS 60

Query: 61 HQIVPC------SAAAAVVAVSAESTDFFLYSV 84
          HQIVPC      +AAAAV+ V+ ES +F LYSV
Sbjct: 61 HQIVPCVAEPTAAAAAAVLVVTVESNEFILYSV 91

[Close]

BLAST of CmaCh17G009670 vs. NCBI nr
Match: gi|703102381|ref|XP_010097445.1| (hypothetical protein L484_004679 [Morus notabilis])

HSP 1 Score: 91.3 bits (225), Expect = 8.7e-16
Identity = 45/83 (54.22%), Postives = 54/83 (65.06%), Query Frame = 1


Query: 1  MGKFVEILDAGVRIVARFHSHCPQTARMYYHPPANSNEGHHSDLQEFRLSSGDVSSHQIV 60
          MGKFVEILD GVRIVARFHSHCPQT+RMYYHPPAN++  HH++   F    GD     + 
Sbjct: 1  MGKFVEILDQGVRIVARFHSHCPQTSRMYYHPPANADNNHHNN-NHFLFYGGDGGDGDVK 60

Query: 61 PCSAAAAVVAVSAESTDFFLYSV 84
                  +   AE+ +F LYSV
Sbjct: 61 VMKCGPKAIGGGAENKEFILYSV 82

[Close]

BLAST of CmaCh17G009670 vs. NCBI nr
Match: gi|590635906|ref|XP_007028738.1| (Uncharacterized protein TCM_024641 [Theobroma cacao])

HSP 1 Score: 88.6 bits (218), Expect = 5.6e-15
Identity = 48/87 (55.17%), Postives = 56/87 (64.37%), Query Frame = 1


Query: 1  MGKFVEILDAGVRIVARFHSHCPQTARMYYHPPANSNEGHHSDLQEFRLSSGDVSSHQ-- 60
          MGK++E+LDAGVRI ARFHSHCPQTAR+YYHPP+N  EGHH    E R  SG     Q  
Sbjct: 1  MGKYMELLDAGVRIAARFHSHCPQTARLYYHPPSNP-EGHHDYHHEARAGSGSTGQVQDP 60

Query: 61 --IVPCSAAAAVVAVSAESTDFFLYSV 84
            ++ C A A   A   EST+   YSV
Sbjct: 61 TLVLSCGAKA---AKGLESTELIFYSV 83

[Close]

BLAST of CmaCh17G009670 vs. NCBI nr
Match: gi|641864657|gb|KDO83343.1| (hypothetical protein CISIN_1g044255mg [Citrus sinensis])

HSP 1 Score: 87.4 bits (215), Expect = 1.3e-14
Identity = 43/83 (51.81%), Postives = 58/83 (69.88%), Query Frame = 1


Query: 1  MGKFVEILDAGVRIVARFHSHCPQTARMYYHPPANSNEGHHSDLQEFRLSSGDVSSHQIV 60
          MGK+ EILDAGVRI ARFHSHCP TAR+YYHPPAN ++ H+        ++GDVSS ++V
Sbjct: 2  MGKYAEILDAGVRIAARFHSHCPHTARLYYHPPANHDDQHYDHQDVAGFATGDVSS-RVV 61

Query: 61 PCSAAAAVVAVSAESTDFFLYSV 84
              + A + +  ++ DF L+SV
Sbjct: 62 VFGGSEANMKMGIDAKDFILFSV 83

[Close]

BLAST of CmaCh17G009670 vs. NCBI nr
Match: gi|567892895|ref|XP_006438968.1| (hypothetical protein CICLE_v10033218mg [Citrus clementina])

HSP 1 Score: 86.3 bits (212), Expect = 2.8e-14
Identity = 42/83 (50.60%), Postives = 58/83 (69.88%), Query Frame = 1


Query: 1  MGKFVEILDAGVRIVARFHSHCPQTARMYYHPPANSNEGHHSDLQEFRLSSGDVSSHQIV 60
          MGK+ EILDAGVRI ARFHSHCP TAR+YYHPPAN ++ H+        ++GDVSS ++V
Sbjct: 2  MGKYAEILDAGVRIAARFHSHCPHTARLYYHPPANHDDQHYDHQDVAGFATGDVSS-RVV 61

Query: 61 PCSAAAAVVAVSAESTDFFLYSV 84
              + + + +  ++ DF L+SV
Sbjct: 62 VFGGSESNMKMGIDTKDFILFSV 83

The following BLAST results are available for this feature:

BLAST of CmaCh17G009670 vs. Swiss-Prot


Match Name	E-value	Identity	Description

BLAST of CmaCh17G009670 vs. TrEMBL


Match Name	E-value	Identity	Description
A0A0A0K6I8_CUCSA	2.7e-24	67.74	Uncharacterized protein OS=Cucumis sativus GN=Csa_7G426490 PE=4 SV=1	[more]
W9R4I1_9ROSA	6.1e-16	54.22	Uncharacterized protein OS=Morus notabilis GN=L484_004679 PE=4 SV=1	[more]
A0A061EVZ9_THECC	3.9e-15	55.17	Uncharacterized protein OS=Theobroma cacao GN=TCM_024641 PE=4 SV=1	[more]
A0A067GUE6_CITSI	8.8e-15	51.81	Uncharacterized protein OS=Citrus sinensis GN=CISIN_1g044255mg PE=4 SV=1	[more]
V4SWE7_9ROSI	2.0e-14	50.60	Uncharacterized protein OS=Citrus clementina GN=CICLE_v10033218mg PE=4 SV=1	[more]

BLAST of CmaCh17G009670 vs. TAIR10


Match Name	E-value	Identity	Description
AT3G57450.1	8.7e-14	56.90	unknown protein	[more]

BLAST of CmaCh17G009670 vs. NCBI nr


Match Name	E-value	Identity	Description
gi\|700189875\|gb\|KGN45108.1\|	3.9e-24	67.74	hypothetical protein Csa_7G426490 [Cucumis sativus]	[more]
gi\|703102381\|ref\|XP_010097445.1\|	8.7e-16	54.22	hypothetical protein L484_004679 [Morus notabilis]	[more]
gi\|590635906\|ref\|XP_007028738.1\|	5.6e-15	55.17	Uncharacterized protein TCM_024641 [Theobroma cacao]	[more]
gi\|641864657\|gb\|KDO83343.1\|	1.3e-14	51.81	hypothetical protein CISIN_1g044255mg [Citrus sinensis]	[more]
gi\|567892895\|ref\|XP_006438968.1\|	2.8e-14	50.60	hypothetical protein CICLE_v10033218mg [Citrus clementina]	[more]

Annotated Terms

The following terms have been associated with this gene:

Vocabulary: **INTERPRO**
Term	Definition

GO Annotation

GO Assignments

This gene is annotated with the following GO terms.

Category	Term Accession	Term Name
biological_process	GO:0008150	biological_process
cellular_component	GO:0005575	cellular_component
molecular_function	GO:0003674	molecular_function

Relationships

The following mRNA feature(s) are a part of this gene:


Feature Name	Unique Name	Type
CmaCh17G009670.1	CmaCh17G009670.1	mRNA

InterPro

Analysis Name: InterPro Annotations of Cucurbita maxima
Date Performed: 2017-05-20


IPR Term	IPR Description	Source	Source Term	Source Description	Alignment
None	No IPR available	PANTHER	PTHR33983	FAMILY NOT NAMED	coord: 1..52 score: 4.2

Synteny

The following gene(s) are orthologous to this gene:


Gene	Orthologue	Organism	Block
CmaCh17G009670	Cucsa.128050	Cucumber (Gy14) v1	cgycmaB0346
CmaCh17G009670	Cla015260	Watermelon (97103) v1	cmawmB332
CmaCh17G009670	Csa7G426490	Cucumber (Chinese Long) v2	cmacuB388
CmaCh17G009670	MELO3C023573	Melon (DHL92) v3.5.1	cmameB326
CmaCh17G009670	ClCG09G003960	Watermelon (Charleston Gray)	cmawcgB310
CmaCh17G009670	CSPI07G19050	Wild cucumber (PI 183967)	cmacpiB392
CmaCh17G009670	CmoCh08G005060	Cucurbita moschata (Rifu)	cmacmoB374
CmaCh17G009670	Lsi03G016860	Bottle gourd (USVL1VR-Ls)	cmalsiB352
CmaCh17G009670	Cp4.1LG17g07900	Cucurbita pepo (Zucchini)	cmacpeB376
CmaCh17G009670	Cp4.1LG12g06530	Cucurbita pepo (Zucchini)	cmacpeB371
CmaCh17G009670	MELO3C009681.2	Melon (DHL92) v3.6.1	cmamedB389
CmaCh17G009670	CsaV3_3G039380	Cucumber (Chinese Long) v3	cmacucB0428
CmaCh17G009670	CsaV3_7G030860	Cucumber (Chinese Long) v3	cmacucB0462
CmaCh17G009670	Bhi09G000558	Wax gourd	cmawgoB0487
CmaCh17G009670	Carg13429	Silver-seed gourd	carcmaB0625
CmaCh17G009670	Carg03531	Silver-seed gourd	carcmaB0344
CmaCh17G009670	Carg18662	Silver-seed gourd	carcmaB0497

The following gene(s) are paralogous to this gene:


Gene	Paralogue	Organism	Block
CmaCh17G009670	CmaCh14G004590	Cucurbita maxima (Rimu)	cmacmaB247
CmaCh17G009670	CmaCh08G005140	Cucurbita maxima (Rimu)	cmacmaB382

The following block(s) are covering this gene:


Gene	Organism	Block
CmaCh17G009670	Cucumber (Chinese Long) v3	cmacucB0432
CmaCh17G009670	Watermelon (97103) v2	cmawmbB360
CmaCh17G009670	Watermelon (97103) v2	cmawmbB386
CmaCh17G009670	Watermelon (97103) v2	cmawmbB391
CmaCh17G009670	Wax gourd	cmawgoB0454
CmaCh17G009670	Cucurbita maxima (Rimu)	cmacmaB250
CmaCh17G009670	Cucurbita maxima (Rimu)	cmacmaB360
CmaCh17G009670	Cucurbita moschata (Rifu)	cmacmoB351
CmaCh17G009670	Cucurbita moschata (Rifu)	cmacmoB353
CmaCh17G009670	Cucurbita moschata (Rifu)	cmacmoB354
CmaCh17G009670	Wild cucumber (PI 183967)	cmacpiB365
CmaCh17G009670	Cucumber (Chinese Long) v2	cmacuB361
CmaCh17G009670	Melon (DHL92) v3.5.1	cmameB333
CmaCh17G009670	Watermelon (Charleston Gray)	cmawcgB306
CmaCh17G009670	Watermelon (Charleston Gray)	cmawcgB314
CmaCh17G009670	Watermelon (97103) v1	cmawmB328
CmaCh17G009670	Watermelon (97103) v1	cmawmB336
CmaCh17G009670	Cucurbita pepo (Zucchini)	cmacpeB399
CmaCh17G009670	Cucurbita pepo (Zucchini)	cmacpeB404
CmaCh17G009670	Bottle gourd (USVL1VR-Ls)	cmalsiB348
CmaCh17G009670	Bottle gourd (USVL1VR-Ls)	cmalsiB351
CmaCh17G009670	Cucumber (Gy14) v2	cgybcmaB350
CmaCh17G009670	Cucumber (Gy14) v2	cgybcmaB925
CmaCh17G009670	Melon (DHL92) v3.6.1	cmamedB387
CmaCh17G009670	Melon (DHL92) v3.6.1	cmamedB379
CmaCh17G009670	Silver-seed gourd	carcmaB1058
CmaCh17G009670	Silver-seed gourd	carcmaB1133