Carg18662 (gene) Silver-seed gourd | Cucurbit Genomics Database (CuGenDB)

Overview


Name	Carg18662
Type	gene
Organism	Cucurbita argyrosperma (Silver-seed gourd)
Description	Pituitary adenylate cyclase-activating polypeptide type I receptor like
Location	Cucurbita_argyrosperma_scaffold_139 : 28500 .. 28751 (+)

Genome Viewer

Gene Expression

Sequences

The following sequences are available for this feature:

Gene sequence (with intron)

Legend: polypeptideexonCDS

Hold the cursor over a type above to highlight its positions in the sequence below.

ATGGGGAAGTTTGTCGAGATTCTCGACGCTGGCGTCAGGATTGTCGCCAGATTTCATTCGCATTGTCCTCAGACTGCTCGGATGTACTACCATCCGCCGGCTAACTCCAACGAAGGCCACCACTCCGACAGCCAGGAGTTTCGCCTTAGCGGCGGCGATGTGTCGTCTCATCAGATTGTTCCTTGCAGTGCCGCGGCCGCCGTTGTAGCCGTCAGCGCTGAGAGTACTGATTTCTTTCTTTACTCTGTTTGA

mRNA sequence

ATGGGGAAGTTTGTCGAGATTCTCGACGCTGGCGTCAGGATTGTCGCCAGATTTCATTCGCATTGTCCTCAGACTGCTCGGATGTACTACCATCCGCCGGCTAACTCCAACGAAGGCCACCACTCCGACAGCCAGGAGTTTCGCCTTAGCGGCGGCGATGTGTCGTCTCATCAGATTGTTCCTTGCAGTGCCGCGGCCGCCGTTGTAGCCGTCAGCGCTGAGAGTACTGATTTCTTTCTTTACTCTGTTTGA

Coding sequence (CDS)

ATGGGGAAGTTTGTCGAGATTCTCGACGCTGGCGTCAGGATTGTCGCCAGATTTCATTCGCATTGTCCTCAGACTGCTCGGATGTACTACCATCCGCCGGCTAACTCCAACGAAGGCCACCACTCCGACAGCCAGGAGTTTCGCCTTAGCGGCGGCGATGTGTCGTCTCATCAGATTGTTCCTTGCAGTGCCGCGGCCGCCGTTGTAGCCGTCAGCGCTGAGAGTACTGATTTCTTTCTTTACTCTGTTTGA

Protein sequence

MGKFVEILDAGVRIVARFHSHCPQTARMYYHPPANSNEGHHSDSQEFRLSGGDVSSHQIVPCSAAAAVVAVSAESTDFFLYSV

Homology

[Close]

BLAST of Carg18662 vs. NCBI nr
Match: XP_022991949.1 (uncharacterized protein LOC111488441 [Cucurbita maxima])

HSP 1 Score: 146.7 bits (369), Expect = 3.4e-32
Identity = 72/74 (97.30%), Postives = 72/74 (97.30%), Query Frame = 0


Query: 1  MGKFVEILDAGVRIVARFHSHCPQTARMYYHPPANSNEGHHSDSQEFRLSGGDVSSHQIV 60
          MGKFVEILDAGVRIVARFHSHCPQTARMYYHPPANSNEGHHSD QEFRLS GDVSSHQIV
Sbjct: 1  MGKFVEILDAGVRIVARFHSHCPQTARMYYHPPANSNEGHHSDLQEFRLSSGDVSSHQIV 60

Query: 61 PCSAAAAVVAVSAE 75
          PCSAAAAVVAVSAE
Sbjct: 61 PCSAAAAVVAVSAE 74

[Close]

BLAST of Carg18662 vs. NCBI nr
Match: KGN45108.1 (hypothetical protein Csa_7G426490 [Cucumis sativus])

HSP 1 Score: 109.4 bits (272), Expect = 6.0e-21
Identity = 59/93 (63.44%), Postives = 65/93 (69.89%), Query Frame = 0


Query: 1  MGKFVEILDAGVRIVARFHSHCPQTARMYYHPPANSNEGHHSDSQEFRLSG----GDVSS 60
          MGK VEILDAG RIVARFHSHCPQT RMYYHPPANS++GHH  S+EFRL G    GD +S
Sbjct: 1  MGKLVEILDAGARIVARFHSHCPQTGRMYYHPPANSDDGHH--SEEFRLGGGVGDGDAAS 60

Query: 61 HQIVPCSA------AAAVVAVSAESTDFFLYSV 84
          HQIVPC A             + ES +F LYSV
Sbjct: 61 HQIVPCVAEPXXXXXXXXXXXTVESNEFILYSV 91

[Close]

BLAST of Carg18662 vs. NCBI nr
Match: EOY09240.1 (Uncharacterized protein TCM_024641 [Theobroma cacao])

HSP 1 Score: 87.0 bits (214), Expect = 3.2e-14
Identity = 47/87 (54.02%), Postives = 55/87 (63.22%), Query Frame = 0


Query: 1  MGKFVEILDAGVRIVARFHSHCPQTARMYYHPPANSNEGHHSDSQEFRLSGGDVSSHQ-- 60
          MGK++E+LDAGVRI ARFHSHCPQTAR+YYHPP+N  EGHH    E R   G     Q  
Sbjct: 1  MGKYMELLDAGVRIAARFHSHCPQTARLYYHPPSNP-EGHHDYHHEARAGSGSTGQVQDP 60

Query: 61 --IVPCSAAAAVVAVSAESTDFFLYSV 84
            ++ C A A   A   EST+   YSV
Sbjct: 61 TLVLSCGAKA---AKGLESTELIFYSV 83

[Close]

BLAST of Carg18662 vs. NCBI nr
Match: XP_017976682.1 (PREDICTED: uncharacterized protein LOC18598931 [Theobroma cacao])

HSP 1 Score: 87.0 bits (214), Expect = 3.2e-14
Identity = 47/87 (54.02%), Postives = 55/87 (63.22%), Query Frame = 0


Query: 1  MGKFVEILDAGVRIVARFHSHCPQTARMYYHPPANSNEGHHSDSQEFRLSGGDVSSHQ-- 60
          MGK++E+LDAGVRI ARFHSHCPQTAR+YYHPP+N  EGHH    E R   G     Q  
Sbjct: 1  MGKYMELLDAGVRIAARFHSHCPQTARLYYHPPSNP-EGHHDYHHEARAGSGSTGQVQDP 60

Query: 61 --IVPCSAAAAVVAVSAESTDFFLYSV 84
            ++ C A A   A   EST+   YSV
Sbjct: 61 TLVLSCGAKA---AKGLESTELIFYSV 83

[Close]

BLAST of Carg18662 vs. NCBI nr
Match: KDO83343.1 (hypothetical protein CISIN_1g044255mg [Citrus sinensis])

HSP 1 Score: 86.3 bits (212), Expect = 5.4e-14
Identity = 43/83 (51.81%), Postives = 57/83 (68.67%), Query Frame = 0


Query: 1  MGKFVEILDAGVRIVARFHSHCPQTARMYYHPPANSNEGHHSDSQEFRLSGGDVSSHQIV 60
          MGK+ EILDAGVRI ARFHSHCP TAR+YYHPPAN ++ H+        + GDVSS ++V
Sbjct: 2  MGKYAEILDAGVRIAARFHSHCPHTARLYYHPPANHDDQHYDHQDVAGFATGDVSS-RVV 61

Query: 61 PCSAAAAVVAVSAESTDFFLYSV 84
              + A + +  ++ DF L+SV
Sbjct: 62 VFGGSEANMKMGIDAKDFILFSV 83

[Close]

BLAST of Carg18662 vs. TAIR10
Match: AT3G57450.1 (unknown protein)

HSP 1 Score: 54.3 bits (129), Expect = 4.2e-08
Identity = 22/28 (78.57%), Postives = 25/28 (89.29%), Query Frame = 0


Query: 1  MGKFVEILDAGVRIVARFHSHCPQTARM 29
          MGK+ E+LD GVRI ARFHSHCPQTAR+
Sbjct: 1  MGKYTEMLDVGVRIAARFHSHCPQTARL 28

[Close]

BLAST of Carg18662 vs. TrEMBL
Match: tr|A0A0A0K6I8|A0A0A0K6I8_CUCSA (Uncharacterized protein OS=Cucumis sativus OX=3659 GN=Csa_7G426490 PE=4 SV=1)

HSP 1 Score: 109.4 bits (272), Expect = 4.0e-21
Identity = 59/93 (63.44%), Postives = 65/93 (69.89%), Query Frame = 0


Query: 1  MGKFVEILDAGVRIVARFHSHCPQTARMYYHPPANSNEGHHSDSQEFRLSG----GDVSS 60
          MGK VEILDAG RIVARFHSHCPQT RMYYHPPANS++GHH  S+EFRL G    GD +S
Sbjct: 1  MGKLVEILDAGARIVARFHSHCPQTGRMYYHPPANSDDGHH--SEEFRLGGGVGDGDAAS 60

Query: 61 HQIVPCSA------AAAVVAVSAESTDFFLYSV 84
          HQIVPC A             + ES +F LYSV
Sbjct: 61 HQIVPCVAEPXXXXXXXXXXXTVESNEFILYSV 91

[Close]

BLAST of Carg18662 vs. TrEMBL
Match: tr|A0A061EVZ9|A0A061EVZ9_THECC (Uncharacterized protein OS=Theobroma cacao OX=3641 GN=TCM_024641 PE=4 SV=1)

HSP 1 Score: 87.0 bits (214), Expect = 2.1e-14
Identity = 47/87 (54.02%), Postives = 55/87 (63.22%), Query Frame = 0


Query: 1  MGKFVEILDAGVRIVARFHSHCPQTARMYYHPPANSNEGHHSDSQEFRLSGGDVSSHQ-- 60
          MGK++E+LDAGVRI ARFHSHCPQTAR+YYHPP+N  EGHH    E R   G     Q  
Sbjct: 1  MGKYMELLDAGVRIAARFHSHCPQTARLYYHPPSNP-EGHHDYHHEARAGSGSTGQVQDP 60

Query: 61 --IVPCSAAAAVVAVSAESTDFFLYSV 84
            ++ C A A   A   EST+   YSV
Sbjct: 61 TLVLSCGAKA---AKGLESTELIFYSV 83

[Close]

BLAST of Carg18662 vs. TrEMBL
Match: tr|A0A067GUE6|A0A067GUE6_CITSI (Uncharacterized protein OS=Citrus sinensis OX=2711 GN=CISIN_1g044255mg PE=4 SV=1)

HSP 1 Score: 86.3 bits (212), Expect = 3.6e-14
Identity = 43/83 (51.81%), Postives = 57/83 (68.67%), Query Frame = 0


Query: 1  MGKFVEILDAGVRIVARFHSHCPQTARMYYHPPANSNEGHHSDSQEFRLSGGDVSSHQIV 60
          MGK+ EILDAGVRI ARFHSHCP TAR+YYHPPAN ++ H+        + GDVSS ++V
Sbjct: 2  MGKYAEILDAGVRIAARFHSHCPHTARLYYHPPANHDDQHYDHQDVAGFATGDVSS-RVV 61

Query: 61 PCSAAAAVVAVSAESTDFFLYSV 84
              + A + +  ++ DF L+SV
Sbjct: 62 VFGGSEANMKMGIDAKDFILFSV 83

[Close]

BLAST of Carg18662 vs. TrEMBL
Match: tr|V4SWE7|V4SWE7_9ROSI (Uncharacterized protein OS=Citrus clementina OX=85681 GN=CICLE_v10033218mg PE=4 SV=1)

HSP 1 Score: 85.1 bits (209), Expect = 8.0e-14
Identity = 42/83 (50.60%), Postives = 57/83 (68.67%), Query Frame = 0


Query: 1  MGKFVEILDAGVRIVARFHSHCPQTARMYYHPPANSNEGHHSDSQEFRLSGGDVSSHQIV 60
          MGK+ EILDAGVRI ARFHSHCP TAR+YYHPPAN ++ H+        + GDVSS ++V
Sbjct: 2  MGKYAEILDAGVRIAARFHSHCPHTARLYYHPPANHDDQHYDHQDVAGFATGDVSS-RVV 61

Query: 61 PCSAAAAVVAVSAESTDFFLYSV 84
              + + + +  ++ DF L+SV
Sbjct: 62 VFGGSESNMKMGIDTKDFILFSV 83

[Close]

BLAST of Carg18662 vs. TrEMBL
Match: tr|A0A0D2PDF0|A0A0D2PDF0_GOSRA (Uncharacterized protein OS=Gossypium raimondii OX=29730 GN=B456_004G171000 PE=4 SV=1)

HSP 1 Score: 82.8 bits (203), Expect = 4.0e-13
Identity = 35/41 (85.37%), Postives = 39/41 (95.12%), Query Frame = 0


Query: 1  MGKFVEILDAGVRIVARFHSHCPQTARMYYHPPANSNEGHH 42
          MGK+ E+LDAGVRIVARFHSHCPQTAR+YYHPPANS+E HH
Sbjct: 1  MGKYTEMLDAGVRIVARFHSHCPQTARLYYHPPANSDEHHH 41

The following BLAST results are available for this feature:

BLAST of Carg18662 vs. NCBI nr


Match Name	E-value	Identity	Description
XP_022991949.1	3.4e-32	97.30	uncharacterized protein LOC111488441 [Cucurbita maxima]	[more]
KGN45108.1	6.0e-21	63.44	hypothetical protein Csa_7G426490 [Cucumis sativus]	[more]
EOY09240.1	3.2e-14	54.02	Uncharacterized protein TCM_024641 [Theobroma cacao]	[more]
XP_017976682.1	3.2e-14	54.02	PREDICTED: uncharacterized protein LOC18598931 [Theobroma cacao]	[more]
KDO83343.1	5.4e-14	51.81	hypothetical protein CISIN_1g044255mg [Citrus sinensis]	[more]

BLAST of Carg18662 vs. TAIR10


Match Name	E-value	Identity	Description
AT3G57450.1	4.2e-08	78.57	unknown protein	[more]

BLAST of Carg18662 vs. Swiss-Prot


Match Name	E-value	Identity	Description

BLAST of Carg18662 vs. TrEMBL


Match Name	E-value	Identity	Description
tr\|A0A0A0K6I8\|A0A0A0K6I8_CUCSA	4.0e-21	63.44	Uncharacterized protein OS=Cucumis sativus OX=3659 GN=Csa_7G426490 PE=4 SV=1	[more]
tr\|A0A061EVZ9\|A0A061EVZ9_THECC	2.1e-14	54.02	Uncharacterized protein OS=Theobroma cacao OX=3641 GN=TCM_024641 PE=4 SV=1	[more]
tr\|A0A067GUE6\|A0A067GUE6_CITSI	3.6e-14	51.81	Uncharacterized protein OS=Citrus sinensis OX=2711 GN=CISIN_1g044255mg PE=4 SV=1	[more]
tr\|V4SWE7\|V4SWE7_9ROSI	8.0e-14	50.60	Uncharacterized protein OS=Citrus clementina OX=85681 GN=CICLE_v10033218mg PE=4 ...	[more]
tr\|A0A0D2PDF0\|A0A0D2PDF0_GOSRA	4.0e-13	85.37	Uncharacterized protein OS=Gossypium raimondii OX=29730 GN=B456_004G171000 PE=4 ...	[more]

GO Annotation

GO Assignments

This gene is annotated with the following GO terms.

Category	Term Accession	Term Name
biological_process	GO:0008150	biological_process
cellular_component	GO:0005575	cellular_component
molecular_function	GO:0003674	molecular_function

Relationships

The following mRNA feature(s) are a part of this gene:


Feature Name	Unique Name	Type
Carg18662-RA	Carg18662-RA	mRNA

InterPro

Analysis Name: InterPro Annotations of silver-seed gourd
Date Performed: 2019-03-07


IPR Term	IPR Description	Source	Source Term	Source Description	Alignment
None	No IPR available	MOBIDB_LITE	mobidb-lite	disorder_prediction	coord: 29..50
None	No IPR available	PANTHER	PTHR33983	FAMILY NOT NAMED	coord: 1..76

Synteny

The following gene(s) are orthologous to this gene:


Gene	Orthologue	Organism	Block
Carg18662	Cla015260	Watermelon (97103) v1	carwmB0344
Carg18662	Csa7G426490	Cucumber (Chinese Long) v2	carcuB0387
Carg18662	ClCG09G003960	Watermelon (Charleston Gray)	carwcgB0345
Carg18662	CSPI07G19050	Wild cucumber (PI 183967)	carcpiB0391
Carg18662	Cucsa.128050	Cucumber (Gy14) v1	carcgyB0415
Carg18662	CmaCh17G009670	Cucurbita maxima (Rimu)	carcmaB0497
Carg18662	CmaCh08G005140	Cucurbita maxima (Rimu)	carcmaB0499
Carg18662	CmoCh08G005060	Cucurbita moschata (Rifu)	carcmoB0482
Carg18662	Cp4.1LG17g07900	Cucurbita pepo (Zucchini)	carcpeB0494
Carg18662	Cp4.1LG12g06530	Cucurbita pepo (Zucchini)	carcpeB0493
Carg18662	CsGy7G017440	Cucumber (Gy14) v2	carcgybB0366
Carg18662	CsaV3_7G030860	Cucumber (Chinese Long) v3	carcucB0390
Carg18662	Bhi09G000558	Wax gourd	carwgoB0439

The following gene(s) are paralogous to this gene:


Gene	Paralogue	Organism	Block
Carg18662	Carg03531	Silver-seed gourd	carcarB288
Carg18662	Carg13429	Silver-seed gourd	carcarB379

The following block(s) are covering this gene:


Gene	Organism	Block
Carg18662	Cucurbita moschata (Rifu)	carcmoB0480
Carg18662	Bottle gourd (USVL1VR-Ls)	carlsiB321
Carg18662	Melon (DHL92) v3.5.1	carmeB0359
Carg18662	Melon (DHL92) v3.6.1	carmedB0364
Carg18662	Watermelon (Charleston Gray)	carwcgB0346
Carg18662	Watermelon (97103) v1	carwmB0345
Carg18662	Watermelon (97103) v2	carwmbB0370