Cla015260 (gene) Watermelon (97103) v1 | Cucurbit Genomics Database (CuGenDB)

Overview


Name	Cla015260
Type	gene
Organism	Citrullus. lanatus (Watermelon (97103) v1)
Description	Unknown Protein (AHRD V1)
Location	Chr9 : 3099830 .. 3100081 (+)

Genome Viewer

Gene Expression

Sequences

The following sequences are available for this feature:

Gene sequence (with intron)

Legend: CDS

Hold the cursor over a type above to highlight its positions in the sequence below.

ATGGGGAAGTTCGTAGAGATTCTTGATGCCGGTGTCAGGATTGTCGCCAGATTTCATTCGCATTGCCCTCAGACTGGACGGATGTACTACCATCCACCGGCTAACTCCGACGACGGCCACCACTCCGAGGAGTTTCGCCCCAGCGGCGGCGATGCGTCGTCTCATCAGATTGTTCGTTGTGGTGCCGAGCCCACGGCCGGCGTCGTAGTCGTCAGCGTTGAGAGTAATGAGTTCATTCTTTACTCTGTCTGA

mRNA sequence

ATGGGGAAGTTCGTAGAGATTCTTGATGCCGGTGTCAGGATTGTCGCCAGATTTCATTCGCATTGCCCTCAGACTGGACGGATGTACTACCATCCACCGGCTAACTCCGACGACGGCCACCACTCCGAGGAGTTTCGCCCCAGCGGCGGCGATGCGTCGTCTCATCAGATTGTTCGTTGTGGTGCCGAGCCCACGGCCGGCGTCGTAGTCGTCAGCGTTGAGAGTAATGAGTTCATTCTTTACTCTGTCTGA

Coding sequence (CDS)

ATGGGGAAGTTCGTAGAGATTCTTGATGCCGGTGTCAGGATTGTCGCCAGATTTCATTCGCATTGCCCTCAGACTGGACGGATGTACTACCATCCACCGGCTAACTCCGACGACGGCCACCACTCCGAGGAGTTTCGCCCCAGCGGCGGCGATGCGTCGTCTCATCAGATTGTTCGTTGTGGTGCCGAGCCCACGGCCGGCGTCGTAGTCGTCAGCGTTGAGAGTAATGAGTTCATTCTTTACTCTGTCTGA

Protein sequence

MGKFVEILDAGVRIVARFHSHCPQTGRMYYHPPANSDDGHHSEEFRPSGGDASSHQIVRCGAEPTAGVVVVSVESNEFILYSV

Homology

[Close]

BLAST of Cla015260 vs. TrEMBL
Match: A0A0A0K6I8_CUCSA (Uncharacterized protein OS=Cucumis sativus GN=Csa_7G426490 PE=4 SV=1)

HSP 1 Score: 142.9 bits (359), Expect = 1.8e-31
Identity = 73/91 (80.22%), Postives = 76/91 (83.52%), Query Frame = 1


Query: 1  MGKFVEILDAGVRIVARFHSHCPQTGRMYYHPPANSDDGHHSEEFRPSG----GDASSHQ 60
          MGK VEILDAG RIVARFHSHCPQTGRMYYHPPANSDDGHHSEEFR  G    GDA+SHQ
Sbjct: 1  MGKLVEILDAGARIVARFHSHCPQTGRMYYHPPANSDDGHHSEEFRLGGGVGDGDAASHQ 60

Query: 61 IVRCGAEPT----AGVVVVSVESNEFILYSV 84
          IV C AEPT    A V+VV+VESNEFILYSV
Sbjct: 61 IVPCVAEPTAAAAAAVLVVTVESNEFILYSV 91

[Close]

BLAST of Cla015260 vs. TrEMBL
Match: W9R4I1_9ROSA (Uncharacterized protein OS=Morus notabilis GN=L484_004679 PE=4 SV=1)

HSP 1 Score: 100.5 bits (249), Expect = 1.0e-18
Identity = 51/86 (59.30%), Postives = 60/86 (69.77%), Query Frame = 1


Query: 1  MGKFVEILDAGVRIVARFHSHCPQTGRMYYHPPANSDDGHH-SEEFRPSGGDASSH--QI 60
          MGKFVEILD GVRIVARFHSHCPQT RMYYHPPAN+D+ HH +  F   GGD      ++
Sbjct: 1  MGKFVEILDQGVRIVARFHSHCPQTSRMYYHPPANADNNHHNNNHFLFYGGDGGDGDVKV 60

Query: 61 VRCGAEPTAGVVVVSVESNEFILYSV 84
          ++CG +   G      E+ EFILYSV
Sbjct: 61 MKCGPKAIGG----GAENKEFILYSV 82

[Close]

BLAST of Cla015260 vs. TrEMBL
Match: A0A059BJM5_EUCGR (Uncharacterized protein OS=Eucalyptus grandis GN=EUGRSUZ_G03361 PE=4 SV=1)

HSP 1 Score: 97.4 bits (241), Expect = 8.5e-18
Identity = 50/85 (58.82%), Postives = 59/85 (69.41%), Query Frame = 1


Query: 1  MGKFVEILDAGVRIVARFHSHCPQTGRMYYHPPANSDDGHHSEEFRPSGGDA--SSHQIV 60
          M K+VE+LDAGVRI ARFHSHCPQT RMYYHPP+NSDD HH  +    GG A  +S Q+ 
Sbjct: 1  MAKYVELLDAGVRIAARFHSHCPQTARMYYHPPSNSDDPHHGGDGGSGGGGAKGASAQMR 60

Query: 61 RCGAEPTAGVVVVSVESNEFILYSV 84
           CG +   G     V++ EFILYSV
Sbjct: 61 PCGHKAFGG-----VDTAEFILYSV 80

[Close]

BLAST of Cla015260 vs. TrEMBL
Match: M1A8Z7_SOLTU (Uncharacterized protein OS=Solanum tuberosum GN=PGSC0003DMG400006790 PE=4 SV=1)

HSP 1 Score: 91.3 bits (225), Expect = 6.1e-16
Identity = 49/90 (54.44%), Postives = 61/90 (67.78%), Query Frame = 1


Query: 1  MGKFVEILDAGVRIVARFHSHCPQTGRMYYHPPANSDDGHHSEEFRPSGGD-ASSHQIVR 60
          M K+VE+LD GVR+VARF+SHCPQT RMYYHPPA  D+ HH    + SGGD   +HQI  
Sbjct: 1  MSKYVELLDTGVRMVARFNSHCPQTSRMYYHPPARHDEDHH----QISGGDGGKNHQIGV 60

Query: 61 CGAEPTAGVVVVSV------ESNEFILYSV 84
           G E  +GV   SV      +SN+FIL++V
Sbjct: 61 SGGEKVSGVRFGSVVAKMGTDSNDFILFTV 86

[Close]

BLAST of Cla015260 vs. TrEMBL
Match: V4SWE7_9ROSI (Uncharacterized protein OS=Citrus clementina GN=CICLE_v10033218mg PE=4 SV=1)

HSP 1 Score: 90.1 bits (222), Expect = 1.4e-15
Identity = 45/85 (52.94%), Postives = 58/85 (68.24%), Query Frame = 1


Query: 1  MGKFVEILDAGVRIVARFHSHCPQTGRMYYHPPANSDDGH--HSEEFRPSGGDASSHQIV 60
          MGK+ EILDAGVRI ARFHSHCP T R+YYHPPAN DD H  H +    + GD SS  +V
Sbjct: 2  MGKYAEILDAGVRIAARFHSHCPHTARLYYHPPANHDDQHYDHQDVAGFATGDVSSRVVV 61

Query: 61 RCGAEPTAGVVVVSVESNEFILYSV 84
            G+E     + + +++ +FIL+SV
Sbjct: 62 FGGSESN---MKMGIDTKDFILFSV 83

[Close]

BLAST of Cla015260 vs. NCBI nr
Match: gi|700189875|gb|KGN45108.1| (hypothetical protein Csa_7G426490 [Cucumis sativus])

HSP 1 Score: 142.9 bits (359), Expect = 2.5e-31
Identity = 73/91 (80.22%), Postives = 76/91 (83.52%), Query Frame = 1


Query: 1  MGKFVEILDAGVRIVARFHSHCPQTGRMYYHPPANSDDGHHSEEFRPSG----GDASSHQ 60
          MGK VEILDAG RIVARFHSHCPQTGRMYYHPPANSDDGHHSEEFR  G    GDA+SHQ
Sbjct: 1  MGKLVEILDAGARIVARFHSHCPQTGRMYYHPPANSDDGHHSEEFRLGGGVGDGDAASHQ 60

Query: 61 IVRCGAEPT----AGVVVVSVESNEFILYSV 84
          IV C AEPT    A V+VV+VESNEFILYSV
Sbjct: 61 IVPCVAEPTAAAAAAVLVVTVESNEFILYSV 91

[Close]

BLAST of Cla015260 vs. NCBI nr
Match: gi|703102381|ref|XP_010097445.1| (hypothetical protein L484_004679 [Morus notabilis])

HSP 1 Score: 100.5 bits (249), Expect = 1.4e-18
Identity = 51/86 (59.30%), Postives = 60/86 (69.77%), Query Frame = 1


Query: 1  MGKFVEILDAGVRIVARFHSHCPQTGRMYYHPPANSDDGHH-SEEFRPSGGDASSH--QI 60
          MGKFVEILD GVRIVARFHSHCPQT RMYYHPPAN+D+ HH +  F   GGD      ++
Sbjct: 1  MGKFVEILDQGVRIVARFHSHCPQTSRMYYHPPANADNNHHNNNHFLFYGGDGGDGDVKV 60

Query: 61 VRCGAEPTAGVVVVSVESNEFILYSV 84
          ++CG +   G      E+ EFILYSV
Sbjct: 61 MKCGPKAIGG----GAENKEFILYSV 82

[Close]

BLAST of Cla015260 vs. NCBI nr
Match: gi|629100316|gb|KCW66081.1| (hypothetical protein EUGRSUZ_G03361 [Eucalyptus grandis])

HSP 1 Score: 97.4 bits (241), Expect = 1.2e-17
Identity = 50/85 (58.82%), Postives = 59/85 (69.41%), Query Frame = 1


Query: 1  MGKFVEILDAGVRIVARFHSHCPQTGRMYYHPPANSDDGHHSEEFRPSGGDA--SSHQIV 60
          M K+VE+LDAGVRI ARFHSHCPQT RMYYHPP+NSDD HH  +    GG A  +S Q+ 
Sbjct: 1  MAKYVELLDAGVRIAARFHSHCPQTARMYYHPPSNSDDPHHGGDGGSGGGGAKGASAQMR 60

Query: 61 RCGAEPTAGVVVVSVESNEFILYSV 84
           CG +   G     V++ EFILYSV
Sbjct: 61 PCGHKAFGG-----VDTAEFILYSV 80

[Close]

BLAST of Cla015260 vs. NCBI nr
Match: gi|567892895|ref|XP_006438968.1| (hypothetical protein CICLE_v10033218mg [Citrus clementina])

HSP 1 Score: 90.1 bits (222), Expect = 1.9e-15
Identity = 45/85 (52.94%), Postives = 58/85 (68.24%), Query Frame = 1


Query: 1  MGKFVEILDAGVRIVARFHSHCPQTGRMYYHPPANSDDGH--HSEEFRPSGGDASSHQIV 60
          MGK+ EILDAGVRI ARFHSHCP T R+YYHPPAN DD H  H +    + GD SS  +V
Sbjct: 2  MGKYAEILDAGVRIAARFHSHCPHTARLYYHPPANHDDQHYDHQDVAGFATGDVSSRVVV 61

Query: 61 RCGAEPTAGVVVVSVESNEFILYSV 84
            G+E     + + +++ +FIL+SV
Sbjct: 62 FGGSESN---MKMGIDTKDFILFSV 83

[Close]

BLAST of Cla015260 vs. NCBI nr
Match: gi|641864657|gb|KDO83343.1| (hypothetical protein CISIN_1g044255mg [Citrus sinensis])

HSP 1 Score: 90.1 bits (222), Expect = 1.9e-15
Identity = 45/85 (52.94%), Postives = 58/85 (68.24%), Query Frame = 1


Query: 1  MGKFVEILDAGVRIVARFHSHCPQTGRMYYHPPANSDDGH--HSEEFRPSGGDASSHQIV 60
          MGK+ EILDAGVRI ARFHSHCP T R+YYHPPAN DD H  H +    + GD SS  +V
Sbjct: 2  MGKYAEILDAGVRIAARFHSHCPHTARLYYHPPANHDDQHYDHQDVAGFATGDVSSRVVV 61

Query: 61 RCGAEPTAGVVVVSVESNEFILYSV 84
            G+E     + + +++ +FIL+SV
Sbjct: 62 FGGSEAN---MKMGIDAKDFILFSV 83

The following BLAST results are available for this feature:

BLAST of Cla015260 vs. TrEMBL


Match Name	E-value	Identity	Description
A0A0A0K6I8_CUCSA	1.8e-31	80.22	Uncharacterized protein OS=Cucumis sativus GN=Csa_7G426490 PE=4 SV=1	[more]
W9R4I1_9ROSA	1.0e-18	59.30	Uncharacterized protein OS=Morus notabilis GN=L484_004679 PE=4 SV=1	[more]
A0A059BJM5_EUCGR	8.5e-18	58.82	Uncharacterized protein OS=Eucalyptus grandis GN=EUGRSUZ_G03361 PE=4 SV=1	[more]
M1A8Z7_SOLTU	6.1e-16	54.44	Uncharacterized protein OS=Solanum tuberosum GN=PGSC0003DMG400006790 PE=4 SV=1	[more]
V4SWE7_9ROSI	1.4e-15	52.94	Uncharacterized protein OS=Citrus clementina GN=CICLE_v10033218mg PE=4 SV=1	[more]

BLAST of Cla015260 vs. NCBI nr


Match Name	E-value	Identity	Description
gi\|700189875\|gb\|KGN45108.1\|	2.5e-31	80.22	hypothetical protein Csa_7G426490 [Cucumis sativus]	[more]
gi\|703102381\|ref\|XP_010097445.1\|	1.4e-18	59.30	hypothetical protein L484_004679 [Morus notabilis]	[more]
gi\|629100316\|gb\|KCW66081.1\|	1.2e-17	58.82	hypothetical protein EUGRSUZ_G03361 [Eucalyptus grandis]	[more]
gi\|567892895\|ref\|XP_006438968.1\|	1.9e-15	52.94	hypothetical protein CICLE_v10033218mg [Citrus clementina]	[more]
gi\|641864657\|gb\|KDO83343.1\|	1.9e-15	52.94	hypothetical protein CISIN_1g044255mg [Citrus sinensis]	[more]

Annotated Terms

The following terms have been associated with this gene:

Vocabulary: **INTERPRO**
Term	Definition

GO Annotation

GO Assignments

This gene is annotated with the following GO terms.

Category	Term Accession	Term Name
biological_process	GO:0008150	biological_process
biological_process	GO:0022900	electron transport chain
biological_process	GO:0055114	oxidation-reduction process
cellular_component	GO:0005575	cellular_component
cellular_component	GO:0005743	mitochondrial inner membrane
cellular_component	GO:0070469	respiratory chain
molecular_function	GO:0003674	molecular_function
molecular_function	GO:0043531	ADP binding
molecular_function	GO:0020037	heme binding
molecular_function	GO:0046872	metal ion binding
molecular_function	GO:0016491	oxidoreductase activity

Unigene

This gene is associated with the following unigenes:


Unigene Name	Analysis Name	Sequence type in Unigene
WMU15520	watermelon unigene v2 vs TrEMBL	transcribed_cluster
WMU16267	watermelon EST collection version 2.0	transcribed_cluster
WMU25682	watermelon EST collection version 2.0	transcribed_cluster
WMU32321	watermelon unigene v2 vs TrEMBL	transcribed_cluster
WMU39705	watermelon EST collection version 2.0	transcribed_cluster
WMU73341	watermelon EST collection version 2.0	transcribed_cluster
WMU74078	watermelon EST collection version 2.0	transcribed_cluster

Relationships

The following mRNA feature(s) are a part of this gene:


Feature Name	Unique Name	Type
Cla015260	Cla015260.1	mRNA

The following transcribed_cluster feature(s) are associated with this gene:


Feature Name	Unique Name	Type
WMU32321	WMU32321	transcribed_cluster
WMU73341	WMU73341	transcribed_cluster
WMU74078	WMU74078	transcribed_cluster
WMU25682	WMU25682	transcribed_cluster
WMU39705	WMU39705	transcribed_cluster
WMU15520	WMU15520	transcribed_cluster
WMU16267	WMU16267	transcribed_cluster

InterPro

Analysis Name: InterPro Annotations of watermelon (97103)
Date Performed: 2016-09-28


IPR Term	IPR Description	Source	Source Term	Source Description	Alignment
None	No IPR available	PANTHER	PTHR33983	FAMILY NOT NAMED	coord: 1..52 score: 3.0

Synteny

The following gene(s) are orthologous to this gene:


Gene	Orthologue	Organism	Block
Cla015260	Csa7G426490	Cucumber (Chinese Long) v2	cuwmB554
Cla015260	MELO3C023573	Melon (DHL92) v3.5.1	mewmB214
Cla015260	ClCG09G003960	Watermelon (Charleston Gray)	wcgwmB007
Cla015260	CSPI07G19050	Wild cucumber (PI 183967)	cpiwmB571
Cla015260	Cucsa.128050	Cucumber (Gy14) v1	cgywmB213
Cla015260	CmaCh08G005140	Cucurbita maxima (Rimu)	cmawmB849
Cla015260	CmaCh17G009670	Cucurbita maxima (Rimu)	cmawmB332
Cla015260	CmoCh08G005060	Cucurbita moschata (Rifu)	cmowmB838
Cla015260	Cp4.1LG12g06530	Cucurbita pepo (Zucchini)	cpewmB136
Cla015260	Cp4.1LG17g07900	Cucurbita pepo (Zucchini)	cpewmB318
Cla015260	CsGy7G017440	Cucumber (Gy14) v2	cgybwmB516
Cla015260	MELO3C023573.2	Melon (DHL92) v3.6.1	medwmB211
Cla015260	Carg18662	Silver-seed gourd	carwmB0344
Cla015260	Carg13429	Silver-seed gourd	carwmB0448
Cla015260	CsaV3_7G030860	Cucumber (Chinese Long) v3	cucwmB577
Cla015260	Bhi09G000558	Wax gourd	wgowmB587

The following gene(s) are paralogous to this gene:

None

The following block(s) are covering this gene:


Gene	Organism	Block
Cla015260	Silver-seed gourd	carwmB0451
Cla015260	Watermelon (97103) v2	wmwmbB015
Cla015260	Watermelon (97103) v2	wmwmbB041
Cla015260	Wax gourd	wgowmB583
Cla015260	Cucurbita maxima (Rimu)	cmawmB226
Cla015260	Cucurbita maxima (Rimu)	cmawmB328
Cla015260	Cucurbita maxima (Rimu)	cmawmB408
Cla015260	Cucurbita maxima (Rimu)	cmawmB857
Cla015260	Cucurbita moschata (Rifu)	cmowmB212
Cla015260	Cucurbita moschata (Rifu)	cmowmB322
Cla015260	Cucurbita moschata (Rifu)	cmowmB326
Cla015260	Wild cucumber (PI 183967)	cpiwmB192
Cla015260	Melon (DHL92) v3.5.1	mewmB186
Cla015260	Watermelon (Charleston Gray)	wcgwmB050
Cla015260	Cucurbita pepo (Zucchini)	cpewmB131
Cla015260	Cucurbita pepo (Zucchini)	cpewmB312
Cla015260	Cucurbita pepo (Zucchini)	cpewmB536
Cla015260	Bottle gourd (USVL1VR-Ls)	lsiwmB171
Cla015260	Melon (DHL92) v3.6.1	medwmB182
Cla015260	Silver-seed gourd	carwmB0345