CSPI07G19050 (gene) Wild cucumber (PI 183967) | Cucurbit Genomics Database (CuGenDB)

Overview


Name	CSPI07G19050
Type	gene
Organism	Cucumis sativus (Wild cucumber (PI 183967))
Description	BnaC04g24170D protein
Location	Chr7 : 16859326 .. 16860173 (+)

Genome Viewer

Gene Expression

Sequences

The following sequences are available for this feature:

Gene sequence (with intron)

Legend: five_prime_UTRCDSthree_prime_UTR

Hold the cursor over a type above to highlight its positions in the sequence below.

CGCGAAGCCAGCTGTTCCTATAAATACCATTCCCTCAACGCTCTTTTTCCATTCTCTTAACCATTCATTTTCTCTCTCTACCTCTACCTCTACCCTCTCTTCTTCATTTTTATGGCCTTCCTTTGGGACGTCTTCTGATTCTTCCTCAATCGCTAACCCTCCATCTCTCTCTCACAAAGACATCCCCTTTCTCCCTTCGTATTCCTATTCCGATCGTTGCACGGATTGTTTCTCCATTATTATTATTGTTATTCCCTTTCCCTTGGCGTTTCTCCATGGGGAAGTTGGTCGAGATTCTTGATGCAGGTGCTAGGATTGTCGCCAGATTTCATTCCCATTGCCCTCAGACTGGCCGGATGTACTACCATCCTCCCGCTAACTCCGACGACGGCCATCACTCTGAAGAGTTTCGCCTCGGCGGCGGCGTCGGCGATGGCGATGCGGCGTCTCATCAGATTGTTCCTTGCGTTGCCGAGCCCACGGCTGCTGCTGCTGCTGTCTTAGTCGTCACCGTTGAGAGTAATGAGTTCATTCTTTACTCTGTTTGATTGTGATTGTTTGAATGGAGAACTTGTGGAATGTTTGTGTGAGAATTTTCTCTCCCATCGTGATATGAAAAAATTTGGAAAAAATAGTTATGGATTTGTCTCTTTTTATATGCTTATTGTTGATGACATGATTTTGTTCGAGACGAGGACCGATCGTATTCTGATTCTTTGGATGATTGATGATTGATGGAATTTGAAATTGGTGCTTTTACAAATGTACTAACCCAGTGTTCTTGCTATTGACTTATGAATTGATTGAAAAATTTCTGTCCCAAGAACTTAGGCGAGAATTTGTGGGGG

mRNA sequence

ATGGGGAAGTTGGTCGAGATTCTTGATGCAGGTGCTAGGATTGTCGCCAGATTTCATTCCCATTGCCCTCAGACTGGCCGGATGTACTACCATCCTCCCGCTAACTCCGACGACGGCCATCACTCTGAAGAGTTTCGCCTCGGCGGCGGCGTCGGCGATGGCGATGCGGCGTCTCATCAGATTGTTCCTTGCGTTGCCGAGCCCACGGCTGCTGCTGCTGCTGTCTTAGTCGTCACCGTTGAGAGTAATGAGTTCATTCTTTACTCTGTTTGA

Coding sequence (CDS)

ATGGGGAAGTTGGTCGAGATTCTTGATGCAGGTGCTAGGATTGTCGCCAGATTTCATTCCCATTGCCCTCAGACTGGCCGGATGTACTACCATCCTCCCGCTAACTCCGACGACGGCCATCACTCTGAAGAGTTTCGCCTCGGCGGCGGCGTCGGCGATGGCGATGCGGCGTCTCATCAGATTGTTCCTTGCGTTGCCGAGCCCACGGCTGCTGCTGCTGCTGTCTTAGTCGTCACCGTTGAGAGTAATGAGTTCATTCTTTACTCTGTTTGA

Homology

[Close]

BLAST of CSPI07G19050 vs. TrEMBL
Match: A0A0A0K6I8_CUCSA (Uncharacterized protein OS=Cucumis sativus GN=Csa_7G426490 PE=4 SV=1)

HSP 1 Score: 179.1 bits (453), Expect = 2.4e-42
Identity = 90/91 (98.90%), Postives = 90/91 (98.90%), Query Frame = 1


Query: 1  MGKLVEILDAGARIVARFHSHCPQTGRMYYHPPANSDDGHHSEEFRLGGGVGDGDAASHQ 60
          MGKLVEILDAGARIVARFHSHCPQTGRMYYHPPANSDDGHHSEEFRLGGGVGDGDAASHQ
Sbjct: 1  MGKLVEILDAGARIVARFHSHCPQTGRMYYHPPANSDDGHHSEEFRLGGGVGDGDAASHQ 60

Query: 61 IVPCVAEPT-AAAAAVLVVTVESNEFILYSV 91
          IVPCVAEPT AAAAAVLVVTVESNEFILYSV
Sbjct: 61 IVPCVAEPTAAAAAAVLVVTVESNEFILYSV 91

[Close]

BLAST of CSPI07G19050 vs. TrEMBL
Match: W9R4I1_9ROSA (Uncharacterized protein OS=Morus notabilis GN=L484_004679 PE=4 SV=1)

HSP 1 Score: 94.7 bits (234), Expect = 6.0e-17
Identity = 51/92 (55.43%), Postives = 59/92 (64.13%), Query Frame = 1


Query: 1  MGKLVEILDAGARIVARFHSHCPQTGRMYYHPPANSDDGHHSEEFRL--GGGVGDGDAAS 60
          MGK VEILD G RIVARFHSHCPQT RMYYHPPAN+D+ HH+    L  GG  GDGD   
Sbjct: 1  MGKFVEILDQGVRIVARFHSHCPQTSRMYYHPPANADNNHHNNNHFLFYGGDGGDGDV-- 60

Query: 61 HQIVPCVAEPTAAAAAVLVVTVESNEFILYSV 91
           +++ C  +     A       E+ EFILYSV
Sbjct: 61 -KVMKCGPKAIGGGA-------ENKEFILYSV 82

[Close]

BLAST of CSPI07G19050 vs. TrEMBL
Match: A0A059BJM5_EUCGR (Uncharacterized protein OS=Eucalyptus grandis GN=EUGRSUZ_G03361 PE=4 SV=1)

HSP 1 Score: 92.4 bits (228), Expect = 3.0e-16
Identity = 50/90 (55.56%), Postives = 57/90 (63.33%), Query Frame = 1


Query: 1  MGKLVEILDAGARIVARFHSHCPQTGRMYYHPPANSDDGHHSEEFRLGGGVGDGDAASHQ 60
          M K VE+LDAG RI ARFHSHCPQT RMYYHPP+NSDD HH  +   GGG   G  AS Q
Sbjct: 1  MAKYVELLDAGVRIAARFHSHCPQTARMYYHPPSNSDDPHHGGDGGSGGGGAKG--ASAQ 60

Query: 61 IVPCVAEPTAAAAAVLVVTVESNEFILYSV 91
          + PC  +            V++ EFILYSV
Sbjct: 61 MRPCGHKAFGG--------VDTAEFILYSV 80

[Close]

BLAST of CSPI07G19050 vs. TrEMBL
Match: A0A059DHX5_EUCGR (Uncharacterized protein OS=Eucalyptus grandis GN=EUGRSUZ_A02351 PE=4 SV=1)

HSP 1 Score: 87.0 bits (214), Expect = 1.3e-14
Identity = 42/92 (45.65%), Postives = 52/92 (56.52%), Query Frame = 1


Query: 1   MGKLVEILDAGARIVARFHSHCPQTGRMYYHPPANSDD--GHHSEEFRLGGGVGDGDAAS 60
           MGK VE+LD G R+ ARFHSHCPQT R+YYHPP+N DD   HH  +F   GG  DG    
Sbjct: 55  MGKYVELLDLGVRVAARFHSHCPQTARLYYHPPSNHDDHHHHHHRDFHSSGGASDGSCPD 114

Query: 61  HQIVPCVAEPTAAAAAVLVVTVESNEFILYSV 91
           H++                  ++S E I+YSV
Sbjct: 115 HRL-----------------RIDSTELIVYSV 129

[Close]

BLAST of CSPI07G19050 vs. TrEMBL
Match: A0A059DI68_EUCGR (Uncharacterized protein OS=Eucalyptus grandis GN=EUGRSUZ_A02353 PE=4 SV=1)

HSP 1 Score: 85.9 bits (211), Expect = 2.8e-14
Identity = 36/61 (59.02%), Postives = 43/61 (70.49%), Query Frame = 1


Query: 1  MGKLVEILDAGARIVARFHSHCPQTGRMYYHPPANSDDGHHSEEFRLGGGVGDGDAASHQ 60
          MGK VE+LD G R+ ARFHSHCPQT R+YYHPP+N DD HH +      G GDG  A H+
Sbjct: 1  MGKYVELLDLGVRMAARFHSHCPQTARLYYHPPSNHDDLHHHDHHHSSCGAGDGPRADHR 60

Query: 61 I 62
          +
Sbjct: 61 L 61

[Close]

BLAST of CSPI07G19050 vs. TAIR10
Match: AT3G57450.1 (AT3G57450.1 unknown protein)

HSP 1 Score: 69.7 bits (169), Expect = 1.0e-12
Identity = 29/50 (58.00%), Postives = 36/50 (72.00%), Query Frame = 1


Query: 1  MGKLVEILDAGARIVARFHSHCPQTGRMYYHPPANSDDGHHSEEFRLGGG 51
          MGK  E+LD G RI ARFHSHCPQT R+YYHPP+++   H   +  +GGG
Sbjct: 1  MGKYTEMLDVGVRIAARFHSHCPQTARLYYHPPSDNHHHHGGVKDLIGGG 50

[Close]

BLAST of CSPI07G19050 vs. NCBI nr
Match: gi|700189875|gb|KGN45108.1| (hypothetical protein Csa_7G426490 [Cucumis sativus])

HSP 1 Score: 179.1 bits (453), Expect = 3.5e-42
Identity = 90/91 (98.90%), Postives = 90/91 (98.90%), Query Frame = 1


Query: 1  MGKLVEILDAGARIVARFHSHCPQTGRMYYHPPANSDDGHHSEEFRLGGGVGDGDAASHQ 60
          MGKLVEILDAGARIVARFHSHCPQTGRMYYHPPANSDDGHHSEEFRLGGGVGDGDAASHQ
Sbjct: 1  MGKLVEILDAGARIVARFHSHCPQTGRMYYHPPANSDDGHHSEEFRLGGGVGDGDAASHQ 60

Query: 61 IVPCVAEPT-AAAAAVLVVTVESNEFILYSV 91
          IVPCVAEPT AAAAAVLVVTVESNEFILYSV
Sbjct: 61 IVPCVAEPTAAAAAAVLVVTVESNEFILYSV 91

[Close]

BLAST of CSPI07G19050 vs. NCBI nr
Match: gi|703102381|ref|XP_010097445.1| (hypothetical protein L484_004679 [Morus notabilis])

HSP 1 Score: 94.7 bits (234), Expect = 8.6e-17
Identity = 51/92 (55.43%), Postives = 59/92 (64.13%), Query Frame = 1


Query: 1  MGKLVEILDAGARIVARFHSHCPQTGRMYYHPPANSDDGHHSEEFRL--GGGVGDGDAAS 60
          MGK VEILD G RIVARFHSHCPQT RMYYHPPAN+D+ HH+    L  GG  GDGD   
Sbjct: 1  MGKFVEILDQGVRIVARFHSHCPQTSRMYYHPPANADNNHHNNNHFLFYGGDGGDGDV-- 60

Query: 61 HQIVPCVAEPTAAAAAVLVVTVESNEFILYSV 91
           +++ C  +     A       E+ EFILYSV
Sbjct: 61 -KVMKCGPKAIGGGA-------ENKEFILYSV 82

[Close]

BLAST of CSPI07G19050 vs. NCBI nr
Match: gi|629100316|gb|KCW66081.1| (hypothetical protein EUGRSUZ_G03361 [Eucalyptus grandis])

HSP 1 Score: 92.4 bits (228), Expect = 4.3e-16
Identity = 50/90 (55.56%), Postives = 57/90 (63.33%), Query Frame = 1


Query: 1  MGKLVEILDAGARIVARFHSHCPQTGRMYYHPPANSDDGHHSEEFRLGGGVGDGDAASHQ 60
          M K VE+LDAG RI ARFHSHCPQT RMYYHPP+NSDD HH  +   GGG   G  AS Q
Sbjct: 1  MAKYVELLDAGVRIAARFHSHCPQTARMYYHPPSNSDDPHHGGDGGSGGGGAKG--ASAQ 60

Query: 61 IVPCVAEPTAAAAAVLVVTVESNEFILYSV 91
          + PC  +            V++ EFILYSV
Sbjct: 61 MRPCGHKAFGG--------VDTAEFILYSV 80

[Close]

BLAST of CSPI07G19050 vs. NCBI nr
Match: gi|629125742|gb|KCW90167.1| (hypothetical protein EUGRSUZ_A02351 [Eucalyptus grandis])

HSP 1 Score: 87.0 bits (214), Expect = 1.8e-14
Identity = 42/92 (45.65%), Postives = 52/92 (56.52%), Query Frame = 1


Query: 1   MGKLVEILDAGARIVARFHSHCPQTGRMYYHPPANSDD--GHHSEEFRLGGGVGDGDAAS 60
           MGK VE+LD G R+ ARFHSHCPQT R+YYHPP+N DD   HH  +F   GG  DG    
Sbjct: 55  MGKYVELLDLGVRVAARFHSHCPQTARLYYHPPSNHDDHHHHHHRDFHSSGGASDGSCPD 114

Query: 61  HQIVPCVAEPTAAAAAVLVVTVESNEFILYSV 91
           H++                  ++S E I+YSV
Sbjct: 115 HRL-----------------RIDSTELIVYSV 129

[Close]

BLAST of CSPI07G19050 vs. NCBI nr
Match: gi|629125744|gb|KCW90169.1| (hypothetical protein EUGRSUZ_A02353 [Eucalyptus grandis])

HSP 1 Score: 85.9 bits (211), Expect = 4.0e-14
Identity = 36/61 (59.02%), Postives = 43/61 (70.49%), Query Frame = 1


Query: 1  MGKLVEILDAGARIVARFHSHCPQTGRMYYHPPANSDDGHHSEEFRLGGGVGDGDAASHQ 60
          MGK VE+LD G R+ ARFHSHCPQT R+YYHPP+N DD HH +      G GDG  A H+
Sbjct: 1  MGKYVELLDLGVRMAARFHSHCPQTARLYYHPPSNHDDLHHHDHHHSSCGAGDGPRADHR 60

Query: 61 I 62
          +
Sbjct: 61 L 61

The following BLAST results are available for this feature:

BLAST of CSPI07G19050 vs. Swiss-Prot


Match Name	E-value	Identity	Description

BLAST of CSPI07G19050 vs. TrEMBL


Match Name	E-value	Identity	Description
A0A0A0K6I8_CUCSA	2.4e-42	98.90	Uncharacterized protein OS=Cucumis sativus GN=Csa_7G426490 PE=4 SV=1	[more]
W9R4I1_9ROSA	6.0e-17	55.43	Uncharacterized protein OS=Morus notabilis GN=L484_004679 PE=4 SV=1	[more]
A0A059BJM5_EUCGR	3.0e-16	55.56	Uncharacterized protein OS=Eucalyptus grandis GN=EUGRSUZ_G03361 PE=4 SV=1	[more]
A0A059DHX5_EUCGR	1.3e-14	45.65	Uncharacterized protein OS=Eucalyptus grandis GN=EUGRSUZ_A02351 PE=4 SV=1	[more]
A0A059DI68_EUCGR	2.8e-14	59.02	Uncharacterized protein OS=Eucalyptus grandis GN=EUGRSUZ_A02353 PE=4 SV=1	[more]

BLAST of CSPI07G19050 vs. TAIR10


Match Name	E-value	Identity	Description
AT3G57450.1	1.0e-12	58.00	unknown protein	[more]

BLAST of CSPI07G19050 vs. NCBI nr


Match Name	E-value	Identity	Description
gi\|700189875\|gb\|KGN45108.1\|	3.5e-42	98.90	hypothetical protein Csa_7G426490 [Cucumis sativus]	[more]
gi\|703102381\|ref\|XP_010097445.1\|	8.6e-17	55.43	hypothetical protein L484_004679 [Morus notabilis]	[more]
gi\|629100316\|gb\|KCW66081.1\|	4.3e-16	55.56	hypothetical protein EUGRSUZ_G03361 [Eucalyptus grandis]	[more]
gi\|629125742\|gb\|KCW90167.1\|	1.8e-14	45.65	hypothetical protein EUGRSUZ_A02351 [Eucalyptus grandis]	[more]
gi\|629125744\|gb\|KCW90169.1\|	4.0e-14	59.02	hypothetical protein EUGRSUZ_A02353 [Eucalyptus grandis]	[more]

Annotated Terms

The following terms have been associated with this gene:

Vocabulary: **INTERPRO**
Term	Definition

GO Annotation

GO Assignments

This gene is annotated with the following GO terms.

Category	Term Accession	Term Name
biological_process	GO:0008150	biological_process
biological_process	GO:0055114	oxidation-reduction process
cellular_component	GO:0005575	cellular_component
molecular_function	GO:0003674	molecular_function
molecular_function	GO:0043531	ADP binding
molecular_function	GO:0020037	heme binding
molecular_function	GO:0046872	metal ion binding
molecular_function	GO:0016491	oxidoreductase activity

Relationships

The following mRNA feature(s) are a part of this gene:


Feature Name	Unique Name	Type
CSPI07G19050.1	CSPI07G19050.1	mRNA

InterPro

Analysis Name: InterPro Annotations of cucumber (PI183967)
Date Performed: 2017-01-17


IPR Term	IPR Description	Source	Source Term	Source Description	Alignment
None	No IPR available	PANTHER	PTHR33983	FAMILY NOT NAMED	coord: 1..58 score: 8.8

Synteny

The following gene(s) are orthologous to this gene:


Gene	Orthologue	Organism	Block
CSPI07G19050	Cla015260	Watermelon (97103) v1	cpiwmB571
CSPI07G19050	Csa7G426490	Cucumber (Chinese Long) v2	cpicuB354
CSPI07G19050	MELO3C023573	Melon (DHL92) v3.5.1	cpimeB551
CSPI07G19050	ClCG09G003960	Watermelon (Charleston Gray)	cpiwcgB543
CSPI07G19050	MELO3C023573.2	Melon (DHL92) v3.6.1	cpimedB536
CSPI07G19050	CsaV3_7G030860	Cucumber (Chinese Long) v3	cpicucB414
CSPI07G19050	Bhi09G000558	Wax gourd	cpiwgoB716
CSPI07G19050	Cucsa.128050	Cucumber (Gy14) v1	cgycpiB180
CSPI07G19050	CmaCh17G009670	Cucurbita maxima (Rimu)	cmacpiB392
CSPI07G19050	CmaCh08G005140	Cucurbita maxima (Rimu)	cmacpiB934
CSPI07G19050	CmoCh08G005060	Cucurbita moschata (Rifu)	cmocpiB913
CSPI07G19050	Cp4.1LG12g06530	Cucurbita pepo (Zucchini)	cpecpiB163
CSPI07G19050	Cp4.1LG17g07900	Cucurbita pepo (Zucchini)	cpecpiB344
CSPI07G19050	CsGy7G017440	Cucumber (Gy14) v2	cgybcpiB331
CSPI07G19050	Carg13429	Silver-seed gourd	carcpiB0489
CSPI07G19050	Carg18662	Silver-seed gourd	carcpiB0391

The following gene(s) are paralogous to this gene:

None

The following block(s) are covering this gene:


Gene	Organism	Block
CSPI07G19050	Cucurbita maxima (Rimu)	cmacpiB276
CSPI07G19050	Cucurbita maxima (Rimu)	cmacpiB502
CSPI07G19050	Cucurbita moschata (Rifu)	cmocpiB266
CSPI07G19050	Cucurbita moschata (Rifu)	cmocpiB381
CSPI07G19050	Cucurbita moschata (Rifu)	cmocpiB492
CSPI07G19050	Cucumber (Chinese Long) v2	cpicuB338
CSPI07G19050	Melon (DHL92) v3.5.1	cpimeB525
CSPI07G19050	Melon (DHL92) v3.5.1	cpimeB559
CSPI07G19050	Watermelon (Charleston Gray)	cpiwcgB560
CSPI07G19050	Watermelon (97103) v1	cpiwmB593
CSPI07G19050	Cucurbita pepo (Zucchini)	cpecpiB588
CSPI07G19050	Cucurbita pepo (Zucchini)	cpecpiB637
CSPI07G19050	Bottle gourd (USVL1VR-Ls)	cpilsiB517
CSPI07G19050	Bottle gourd (USVL1VR-Ls)	cpilsiB530
CSPI07G19050	Melon (DHL92) v3.6.1	cpimedB512
CSPI07G19050	Melon (DHL92) v3.6.1	cpimedB544
CSPI07G19050	Cucumber (Gy14) v2	cgybcpiB154
CSPI07G19050	Silver-seed gourd	carcpiB0801
CSPI07G19050	Cucumber (Chinese Long) v3	cpicucB395
CSPI07G19050	Watermelon (97103) v2	cpiwmbB541
CSPI07G19050	Watermelon (97103) v2	cpiwmbB587
CSPI07G19050	Wax gourd	cpiwgoB658
CSPI07G19050	Wild cucumber (PI 183967)	cpicpiB142