Cp4.1LG12g06530 (gene) Cucurbita pepo (Zucchini)

Overview
NameCp4.1LG12g06530
Typegene
OrganismCucurbita pepo (Cucurbita pepo (Zucchini))
DescriptionBnaC04g24170D protein
LocationCp4.1LG12 : 7429540 .. 7429791 (-)
Genome Viewer
Sequences
The following sequences are available for this feature:

Gene sequence (with intron)

Legend: CDS
Hold the cursor over a type above to highlight its positions in the sequence below.
ATGGGGAAGTTTGTCGAGATTCTCGACGCTGGCGTCAGGATTGTCGCCAGATTTCATTCGCATTGTCCTCAGACTGCTCGGATGTACTACCATCCGCCGGCTAACTCCAACGAAGGCCACCACTCCGACCGCCAGGAGTTTCGCCTTAGCGGCGGCGATGTTTCGTCTCATCAGATTGTTCCTTGCAGTGCCGCGGCCGCCGTTGTAGCCGTCAGCGCTGAGAGTACGGATTTCTTTCTTTACTCTGTTTGA

mRNA sequence

ATGGGGAAGTTTGTCGAGATTCTCGACGCTGGCGTCAGGATTGTCGCCAGATTTCATTCGCATTGTCCTCAGACTGCTCGGATGTACTACCATCCGCCGGCTAACTCCAACGAAGGCCACCACTCCGACCGCCAGGAGTTTCGCCTTAGCGGCGGCGATGTTTCGTCTCATCAGATTGTTCCTTGCAGTGCCGCGGCCGCCGTTGTAGCCGTCAGCGCTGAGAGTACGGATTTCTTTCTTTACTCTGTTTGA

Coding sequence (CDS)

ATGGGGAAGTTTGTCGAGATTCTCGACGCTGGCGTCAGGATTGTCGCCAGATTTCATTCGCATTGTCCTCAGACTGCTCGGATGTACTACCATCCGCCGGCTAACTCCAACGAAGGCCACCACTCCGACCGCCAGGAGTTTCGCCTTAGCGGCGGCGATGTTTCGTCTCATCAGATTGTTCCTTGCAGTGCCGCGGCCGCCGTTGTAGCCGTCAGCGCTGAGAGTACGGATTTCTTTCTTTACTCTGTTTGA

Protein sequence

MGKFVEILDAGVRIVARFHSHCPQTARMYYHPPANSNEGHHSDRQEFRLSGGDVSSHQIVPCSAAAAVVAVSAESTDFFLYSV
Homology
[Close]
BLAST of Cp4.1LG12g06530 vs. TrEMBL
Match: A0A0A0K6I8_CUCSA (Uncharacterized protein OS=Cucumis sativus GN=Csa_7G426490 PE=4 SV=1)

HSP 1 Score: 121.7 bits (304), Expect = 4.2e-25
Identity = 64/93 (68.82%), Postives = 72/93 (77.42%), Query Frame = 1 

Query: 1  MGKFVEILDAGVRIVARFHSHCPQTARMYYHPPANSNEGHHSDRQEFRLSG----GDVSS 60
          MGK VEILDAG RIVARFHSHCPQT RMYYHPPANS++GHHS  +EFRL G    GD +S
Sbjct: 1  MGKLVEILDAGARIVARFHSHCPQTGRMYYHPPANSDDGHHS--EEFRLGGGVGDGDAAS 60

Query: 61 HQIVPC------SAAAAVVAVSAESTDFFLYSV 84
          HQIVPC      +AAAAV+ V+ ES +F LYSV
Sbjct: 61 HQIVPCVAEPTAAAAAAVLVVTVESNEFILYSV 91

[Close]
BLAST of Cp4.1LG12g06530 vs. TrEMBL
Match: W9R4I1_9ROSA (Uncharacterized protein OS=Morus notabilis GN=L484_004679 PE=4 SV=1)

HSP 1 Score: 94.0 bits (232), Expect = 9.4e-17
Identity = 46/83 (55.42%), Postives = 55/83 (66.27%), Query Frame = 1 

Query: 1  MGKFVEILDAGVRIVARFHSHCPQTARMYYHPPANSNEGHHSDRQEFRLSGGDVSSHQIV 60
          MGKFVEILD GVRIVARFHSHCPQT+RMYYHPPAN++  HH++   F   GGD     + 
Sbjct: 1  MGKFVEILDQGVRIVARFHSHCPQTSRMYYHPPANADNNHHNN-NHFLFYGGDGGDGDVK 60

Query: 61 PCSAAAAVVAVSAESTDFFLYSV 84
                  +   AE+ +F LYSV
Sbjct: 61 VMKCGPKAIGGGAENKEFILYSV 82

[Close]
BLAST of Cp4.1LG12g06530 vs. TrEMBL
Match: A0A061EVZ9_THECC (Uncharacterized protein OS=Theobroma cacao GN=TCM_024641 PE=4 SV=1)

HSP 1 Score: 87.8 bits (216), Expect = 6.7e-15
Identity = 47/87 (54.02%), Postives = 55/87 (63.22%), Query Frame = 1 

Query: 1  MGKFVEILDAGVRIVARFHSHCPQTARMYYHPPANSNEGHHSDRQEFRLSGGDVSSHQ-- 60
          MGK++E+LDAGVRI ARFHSHCPQTAR+YYHPP+N  EGHH    E R   G     Q  
Sbjct: 1  MGKYMELLDAGVRIAARFHSHCPQTARLYYHPPSNP-EGHHDYHHEARAGSGSTGQVQDP 60

Query: 61 --IVPCSAAAAVVAVSAESTDFFLYSV 84
            ++ C A A   A   EST+   YSV
Sbjct: 61 TLVLSCGAKA---AKGLESTELIFYSV 83

[Close]
BLAST of Cp4.1LG12g06530 vs. TrEMBL
Match: A0A067GUE6_CITSI (Uncharacterized protein OS=Citrus sinensis GN=CISIN_1g044255mg PE=4 SV=1)

HSP 1 Score: 87.4 bits (215), Expect = 8.8e-15
Identity = 43/83 (51.81%), Postives = 58/83 (69.88%), Query Frame = 1 

Query: 1  MGKFVEILDAGVRIVARFHSHCPQTARMYYHPPANSNEGHHSDRQEFRLSGGDVSSHQIV 60
          MGK+ EILDAGVRI ARFHSHCP TAR+YYHPPAN ++ H+  +     + GDVSS ++V
Sbjct: 2  MGKYAEILDAGVRIAARFHSHCPHTARLYYHPPANHDDQHYDHQDVAGFATGDVSS-RVV 61

Query: 61 PCSAAAAVVAVSAESTDFFLYSV 84
              + A + +  ++ DF L+SV
Sbjct: 62 VFGGSEANMKMGIDAKDFILFSV 83

[Close]
BLAST of Cp4.1LG12g06530 vs. TrEMBL
Match: V4SWE7_9ROSI (Uncharacterized protein OS=Citrus clementina GN=CICLE_v10033218mg PE=4 SV=1)

HSP 1 Score: 86.3 bits (212), Expect = 2.0e-14
Identity = 42/83 (50.60%), Postives = 58/83 (69.88%), Query Frame = 1 

Query: 1  MGKFVEILDAGVRIVARFHSHCPQTARMYYHPPANSNEGHHSDRQEFRLSGGDVSSHQIV 60
          MGK+ EILDAGVRI ARFHSHCP TAR+YYHPPAN ++ H+  +     + GDVSS ++V
Sbjct: 2  MGKYAEILDAGVRIAARFHSHCPHTARLYYHPPANHDDQHYDHQDVAGFATGDVSS-RVV 61

Query: 61 PCSAAAAVVAVSAESTDFFLYSV 84
              + + + +  ++ DF L+SV
Sbjct: 62 VFGGSESNMKMGIDTKDFILFSV 83

[Close]
BLAST of Cp4.1LG12g06530 vs. TAIR10
Match: AT3G57450.1 (AT3G57450.1 unknown protein)

HSP 1 Score: 73.6 bits (179), Expect = 6.6e-14
Identity = 34/58 (58.62%), Postives = 42/58 (72.41%), Query Frame = 1 

Query: 1  MGKFVEILDAGVRIVARFHSHCPQTARMYYHPPANSNEGHHSDRQEFRLSGGDVSSHQ 59
          MGK+ E+LD GVRI ARFHSHCPQTAR+YYHPP++ N  HH   ++    GG + S Q
Sbjct: 1  MGKYTEMLDVGVRIAARFHSHCPQTARLYYHPPSD-NHHHHGGVKDLIGGGGVLGSGQ 57

[Close]
BLAST of Cp4.1LG12g06530 vs. NCBI nr
Match: gi|700189875|gb|KGN45108.1| (hypothetical protein Csa_7G426490 [Cucumis sativus])

HSP 1 Score: 121.7 bits (304), Expect = 6.0e-25
Identity = 64/93 (68.82%), Postives = 72/93 (77.42%), Query Frame = 1 

Query: 1  MGKFVEILDAGVRIVARFHSHCPQTARMYYHPPANSNEGHHSDRQEFRLSG----GDVSS 60
          MGK VEILDAG RIVARFHSHCPQT RMYYHPPANS++GHHS  +EFRL G    GD +S
Sbjct: 1  MGKLVEILDAGARIVARFHSHCPQTGRMYYHPPANSDDGHHS--EEFRLGGGVGDGDAAS 60

Query: 61 HQIVPC------SAAAAVVAVSAESTDFFLYSV 84
          HQIVPC      +AAAAV+ V+ ES +F LYSV
Sbjct: 61 HQIVPCVAEPTAAAAAAVLVVTVESNEFILYSV 91

[Close]
BLAST of Cp4.1LG12g06530 vs. NCBI nr
Match: gi|703102381|ref|XP_010097445.1| (hypothetical protein L484_004679 [Morus notabilis])

HSP 1 Score: 94.0 bits (232), Expect = 1.3e-16
Identity = 46/83 (55.42%), Postives = 55/83 (66.27%), Query Frame = 1 

Query: 1  MGKFVEILDAGVRIVARFHSHCPQTARMYYHPPANSNEGHHSDRQEFRLSGGDVSSHQIV 60
          MGKFVEILD GVRIVARFHSHCPQT+RMYYHPPAN++  HH++   F   GGD     + 
Sbjct: 1  MGKFVEILDQGVRIVARFHSHCPQTSRMYYHPPANADNNHHNN-NHFLFYGGDGGDGDVK 60

Query: 61 PCSAAAAVVAVSAESTDFFLYSV 84
                  +   AE+ +F LYSV
Sbjct: 61 VMKCGPKAIGGGAENKEFILYSV 82

[Close]
BLAST of Cp4.1LG12g06530 vs. NCBI nr
Match: gi|590635906|ref|XP_007028738.1| (Uncharacterized protein TCM_024641 [Theobroma cacao])

HSP 1 Score: 87.8 bits (216), Expect = 9.6e-15
Identity = 47/87 (54.02%), Postives = 55/87 (63.22%), Query Frame = 1 

Query: 1  MGKFVEILDAGVRIVARFHSHCPQTARMYYHPPANSNEGHHSDRQEFRLSGGDVSSHQ-- 60
          MGK++E+LDAGVRI ARFHSHCPQTAR+YYHPP+N  EGHH    E R   G     Q  
Sbjct: 1  MGKYMELLDAGVRIAARFHSHCPQTARLYYHPPSNP-EGHHDYHHEARAGSGSTGQVQDP 60

Query: 61 --IVPCSAAAAVVAVSAESTDFFLYSV 84
            ++ C A A   A   EST+   YSV
Sbjct: 61 TLVLSCGAKA---AKGLESTELIFYSV 83

[Close]
BLAST of Cp4.1LG12g06530 vs. NCBI nr
Match: gi|641864657|gb|KDO83343.1| (hypothetical protein CISIN_1g044255mg [Citrus sinensis])

HSP 1 Score: 87.4 bits (215), Expect = 1.3e-14
Identity = 43/83 (51.81%), Postives = 58/83 (69.88%), Query Frame = 1 

Query: 1  MGKFVEILDAGVRIVARFHSHCPQTARMYYHPPANSNEGHHSDRQEFRLSGGDVSSHQIV 60
          MGK+ EILDAGVRI ARFHSHCP TAR+YYHPPAN ++ H+  +     + GDVSS ++V
Sbjct: 2  MGKYAEILDAGVRIAARFHSHCPHTARLYYHPPANHDDQHYDHQDVAGFATGDVSS-RVV 61

Query: 61 PCSAAAAVVAVSAESTDFFLYSV 84
              + A + +  ++ DF L+SV
Sbjct: 62 VFGGSEANMKMGIDAKDFILFSV 83

[Close]
BLAST of Cp4.1LG12g06530 vs. NCBI nr
Match: gi|567892895|ref|XP_006438968.1| (hypothetical protein CICLE_v10033218mg [Citrus clementina])

HSP 1 Score: 86.3 bits (212), Expect = 2.8e-14
Identity = 42/83 (50.60%), Postives = 58/83 (69.88%), Query Frame = 1 

Query: 1  MGKFVEILDAGVRIVARFHSHCPQTARMYYHPPANSNEGHHSDRQEFRLSGGDVSSHQIV 60
          MGK+ EILDAGVRI ARFHSHCP TAR+YYHPPAN ++ H+  +     + GDVSS ++V
Sbjct: 2  MGKYAEILDAGVRIAARFHSHCPHTARLYYHPPANHDDQHYDHQDVAGFATGDVSS-RVV 61

Query: 61 PCSAAAAVVAVSAESTDFFLYSV 84
              + + + +  ++ DF L+SV
Sbjct: 62 VFGGSESNMKMGIDTKDFILFSV 83

The following BLAST results are available for this feature:
BLAST of Cp4.1LG12g06530 vs. Swiss-Prot
Match NameE-valueIdentityDescription
BLAST of Cp4.1LG12g06530 vs. TrEMBL
Match NameE-valueIdentityDescription
A0A0A0K6I8_CUCSA4.2e-2568.82Uncharacterized protein OS=Cucumis sativus GN=Csa_7G426490 PE=4 SV=1[more]
W9R4I1_9ROSA9.4e-1755.42Uncharacterized protein OS=Morus notabilis GN=L484_004679 PE=4 SV=1[more]
A0A061EVZ9_THECC6.7e-1554.02Uncharacterized protein OS=Theobroma cacao GN=TCM_024641 PE=4 SV=1[more]
A0A067GUE6_CITSI8.8e-1551.81Uncharacterized protein OS=Citrus sinensis GN=CISIN_1g044255mg PE=4 SV=1[more]
V4SWE7_9ROSI2.0e-1450.60Uncharacterized protein OS=Citrus clementina GN=CICLE_v10033218mg PE=4 SV=1[more]
BLAST of Cp4.1LG12g06530 vs. TAIR10
Match NameE-valueIdentityDescription
AT3G57450.16.6e-1458.62 unknown protein[more]
BLAST of Cp4.1LG12g06530 vs. NCBI nr
Match NameE-valueIdentityDescription
gi|700189875|gb|KGN45108.1|6.0e-2568.82hypothetical protein Csa_7G426490 [Cucumis sativus][more]
gi|703102381|ref|XP_010097445.1|1.3e-1655.42hypothetical protein L484_004679 [Morus notabilis][more]
gi|590635906|ref|XP_007028738.1|9.6e-1554.02Uncharacterized protein TCM_024641 [Theobroma cacao][more]
gi|641864657|gb|KDO83343.1|1.3e-1451.81hypothetical protein CISIN_1g044255mg [Citrus sinensis][more]
gi|567892895|ref|XP_006438968.1|2.8e-1450.60hypothetical protein CICLE_v10033218mg [Citrus clementina][more]
Annotated Terms
The following terms have been associated with this gene:
Vocabulary: INTERPRO
TermDefinition
GO Annotation
GO Assignments
This gene is annotated with the following GO terms.
Category Term Accession Term Name
biological_process GO:0008150 biological_process
cellular_component GO:0005575 cellular_component
molecular_function GO:0003674 molecular_function
Relationships

The following mRNA feature(s) are a part of this gene:

Feature NameUnique NameType
Cp4.1LG12g06530.1Cp4.1LG12g06530.1mRNA


InterPro
Analysis Name: InterPro Annotations of Cucurbita pepo
Date Performed: 2017-12-02
IPR TermIPR DescriptionSourceSource TermSource DescriptionAlignment
NoneNo IPR availablePANTHERPTHR33983FAMILY NOT NAMEDcoord: 1..52
score: 4.8

Synteny
The following gene(s) are orthologous to this gene:
GeneOrthologueOrganismBlock
Cp4.1LG12g06530Cucsa.128050Cucumber (Gy14) v1cgycpeB0334
Cp4.1LG12g06530CmaCh17G009670Cucurbita maxima (Rimu)cmacpeB371
Cp4.1LG12g06530CmaCh08G005140Cucurbita maxima (Rimu)cmacpeB902
Cp4.1LG12g06530CmoCh08G005060Cucurbita moschata (Rifu)cmocpeB839
Cp4.1LG12g06530Cla015260Watermelon (97103) v1cpewmB136
Cp4.1LG12g06530Csa7G426490Cucumber (Chinese Long) v2cpecuB161
Cp4.1LG12g06530ClCG09G003960Watermelon (Charleston Gray)cpewcgB130
Cp4.1LG12g06530CSPI07G19050Wild cucumber (PI 183967)cpecpiB163
Cp4.1LG12g06530CsaV3_7G030860Cucumber (Chinese Long) v3cpecucB0188
Cp4.1LG12g06530Bhi09G000558Wax gourdcpewgoB0201
Cp4.1LG12g06530Carg18662Silver-seed gourdcarcpeB0493
Cp4.1LG12g06530Carg13429Silver-seed gourdcarcpeB0631
The following gene(s) are paralogous to this gene:
GeneParalogueOrganismBlock
Cp4.1LG12g06530Cp4.1LG17g07900Cucurbita pepo (Zucchini)cpecpeB157
The following block(s) are covering this gene:
GeneOrganismBlock
Cp4.1LG12g06530Cucurbita maxima (Rimu)cmacpeB260
Cp4.1LG12g06530Cucurbita maxima (Rimu)cmacpeB465
Cp4.1LG12g06530Cucurbita moschata (Rifu)cmocpeB224
Cp4.1LG12g06530Cucurbita moschata (Rifu)cmocpeB335
Cp4.1LG12g06530Cucurbita moschata (Rifu)cmocpeB425
Cp4.1LG12g06530Wild cucumber (PI 183967)cpecpiB138
Cp4.1LG12g06530Cucumber (Chinese Long) v2cpecuB137
Cp4.1LG12g06530Bottle gourd (USVL1VR-Ls)cpelsiB113
Cp4.1LG12g06530Bottle gourd (USVL1VR-Ls)cpelsiB116
Cp4.1LG12g06530Watermelon (Charleston Gray)cpewcgB126
Cp4.1LG12g06530Watermelon (Charleston Gray)cpewcgB134
Cp4.1LG12g06530Watermelon (97103) v1cpewmB131
Cp4.1LG12g06530Watermelon (97103) v1cpewmB141
Cp4.1LG12g06530Melon (DHL92) v3.5.1cpemeB123
Cp4.1LG12g06530Melon (DHL92) v3.5.1cpemeB133
Cp4.1LG12g06530Cucumber (Gy14) v2cgybcpeB308
Cp4.1LG12g06530Cucumber (Gy14) v2cgybcpeB906
Cp4.1LG12g06530Melon (DHL92) v3.6.1cpemedB150
Cp4.1LG12g06530Melon (DHL92) v3.6.1cpemedB160
Cp4.1LG12g06530Silver-seed gourdcarcpeB1070
Cp4.1LG12g06530Cucumber (Chinese Long) v3cpecucB0158
Cp4.1LG12g06530Wax gourdcpewgoB0171
Cp4.1LG12g06530Cucurbita pepo (Zucchini)cpecpeB181
Cp4.1LG12g06530Cucurbita pepo (Zucchini)cpecpeB185