CSPI07G19050.1 (mRNA) Wild cucumber (PI 183967) | Cucurbit Genomics Database (CuGenDB)

Overview


Name	CSPI07G19050.1
Type	mRNA
Organism	Cucumis sativus (Wild cucumber (PI 183967))
Description	BnaC04g24170D protein
Location	Chr7 : 16859326 .. 16860173 (+)
Sequence length	273

Genome Viewer

Sequences

The following sequences are available for this feature:

Gene sequence (with intron)

Legend: five_prime_UTRCDSthree_prime_UTR

Hold the cursor over a type above to highlight its positions in the sequence below.

CGCGAAGCCAGCTGTTCCTATAAATACCATTCCCTCAACGCTCTTTTTCCATTCTCTTAACCATTCATTTTCTCTCTCTACCTCTACCTCTACCCTCTCTTCTTCATTTTTATGGCCTTCCTTTGGGACGTCTTCTGATTCTTCCTCAATCGCTAACCCTCCATCTCTCTCTCACAAAGACATCCCCTTTCTCCCTTCGTATTCCTATTCCGATCGTTGCACGGATTGTTTCTCCATTATTATTATTGTTATTCCCTTTCCCTTGGCGTTTCTCCATGGGGAAGTTGGTCGAGATTCTTGATGCAGGTGCTAGGATTGTCGCCAGATTTCATTCCCATTGCCCTCAGACTGGCCGGATGTACTACCATCCTCCCGCTAACTCCGACGACGGCCATCACTCTGAAGAGTTTCGCCTCGGCGGCGGCGTCGGCGATGGCGATGCGGCGTCTCATCAGATTGTTCCTTGCGTTGCCGAGCCCACGGCTGCTGCTGCTGCTGTCTTAGTCGTCACCGTTGAGAGTAATGAGTTCATTCTTTACTCTGTTTGATTGTGATTGTTTGAATGGAGAACTTGTGGAATGTTTGTGTGAGAATTTTCTCTCCCATCGTGATATGAAAAAATTTGGAAAAAATAGTTATGGATTTGTCTCTTTTTATATGCTTATTGTTGATGACATGATTTTGTTCGAGACGAGGACCGATCGTATTCTGATTCTTTGGATGATTGATGATTGATGGAATTTGAAATTGGTGCTTTTACAAATGTACTAACCCAGTGTTCTTGCTATTGACTTATGAATTGATTGAAAAATTTCTGTCCCAAGAACTTAGGCGAGAATTTGTGGGGG

mRNA sequence

ATGGGGAAGTTGGTCGAGATTCTTGATGCAGGTGCTAGGATTGTCGCCAGATTTCATTCCCATTGCCCTCAGACTGGCCGGATGTACTACCATCCTCCCGCTAACTCCGACGACGGCCATCACTCTGAAGAGTTTCGCCTCGGCGGCGGCGTCGGCGATGGCGATGCGGCGTCTCATCAGATTGTTCCTTGCGTTGCCGAGCCCACGGCTGCTGCTGCTGCTGTCTTAGTCGTCACCGTTGAGAGTAATGAGTTCATTCTTTACTCTGTTTGA

Coding sequence (CDS)

ATGGGGAAGTTGGTCGAGATTCTTGATGCAGGTGCTAGGATTGTCGCCAGATTTCATTCCCATTGCCCTCAGACTGGCCGGATGTACTACCATCCTCCCGCTAACTCCGACGACGGCCATCACTCTGAAGAGTTTCGCCTCGGCGGCGGCGTCGGCGATGGCGATGCGGCGTCTCATCAGATTGTTCCTTGCGTTGCCGAGCCCACGGCTGCTGCTGCTGCTGTCTTAGTCGTCACCGTTGAGAGTAATGAGTTCATTCTTTACTCTGTTTGA

Homology

[Close]

BLAST of CSPI07G19050.1 vs. TrEMBL
Match: A0A0A0K6I8_CUCSA (Uncharacterized protein OS=Cucumis sativus GN=Csa_7G426490 PE=4 SV=1)

HSP 1 Score: 179.1 bits (453), Expect = 2.4e-42
Identity = 90/91 (98.90%), Postives = 90/91 (98.90%), Query Frame = 1


Query: 1  MGKLVEILDAGARIVARFHSHCPQTGRMYYHPPANSDDGHHSEEFRLGGGVGDGDAASHQ 60
          MGKLVEILDAGARIVARFHSHCPQTGRMYYHPPANSDDGHHSEEFRLGGGVGDGDAASHQ
Sbjct: 1  MGKLVEILDAGARIVARFHSHCPQTGRMYYHPPANSDDGHHSEEFRLGGGVGDGDAASHQ 60

Query: 61 IVPCVAEPT-AAAAAVLVVTVESNEFILYSV 91
          IVPCVAEPT AAAAAVLVVTVESNEFILYSV
Sbjct: 61 IVPCVAEPTAAAAAAVLVVTVESNEFILYSV 91

[Close]

BLAST of CSPI07G19050.1 vs. TrEMBL
Match: W9R4I1_9ROSA (Uncharacterized protein OS=Morus notabilis GN=L484_004679 PE=4 SV=1)

HSP 1 Score: 94.7 bits (234), Expect = 6.0e-17
Identity = 51/92 (55.43%), Postives = 59/92 (64.13%), Query Frame = 1


Query: 1  MGKLVEILDAGARIVARFHSHCPQTGRMYYHPPANSDDGHHSEEFRL--GGGVGDGDAAS 60
          MGK VEILD G RIVARFHSHCPQT RMYYHPPAN+D+ HH+    L  GG  GDGD   
Sbjct: 1  MGKFVEILDQGVRIVARFHSHCPQTSRMYYHPPANADNNHHNNNHFLFYGGDGGDGDV-- 60

Query: 61 HQIVPCVAEPTAAAAAVLVVTVESNEFILYSV 91
           +++ C  +     A       E+ EFILYSV
Sbjct: 61 -KVMKCGPKAIGGGA-------ENKEFILYSV 82

[Close]

BLAST of CSPI07G19050.1 vs. TrEMBL
Match: A0A059BJM5_EUCGR (Uncharacterized protein OS=Eucalyptus grandis GN=EUGRSUZ_G03361 PE=4 SV=1)

HSP 1 Score: 92.4 bits (228), Expect = 3.0e-16
Identity = 50/90 (55.56%), Postives = 57/90 (63.33%), Query Frame = 1


Query: 1  MGKLVEILDAGARIVARFHSHCPQTGRMYYHPPANSDDGHHSEEFRLGGGVGDGDAASHQ 60
          M K VE+LDAG RI ARFHSHCPQT RMYYHPP+NSDD HH  +   GGG   G  AS Q
Sbjct: 1  MAKYVELLDAGVRIAARFHSHCPQTARMYYHPPSNSDDPHHGGDGGSGGGGAKG--ASAQ 60

Query: 61 IVPCVAEPTAAAAAVLVVTVESNEFILYSV 91
          + PC  +            V++ EFILYSV
Sbjct: 61 MRPCGHKAFGG--------VDTAEFILYSV 80

[Close]

BLAST of CSPI07G19050.1 vs. TrEMBL
Match: A0A059DHX5_EUCGR (Uncharacterized protein OS=Eucalyptus grandis GN=EUGRSUZ_A02351 PE=4 SV=1)

HSP 1 Score: 87.0 bits (214), Expect = 1.3e-14
Identity = 42/92 (45.65%), Postives = 52/92 (56.52%), Query Frame = 1


Query: 1   MGKLVEILDAGARIVARFHSHCPQTGRMYYHPPANSDD--GHHSEEFRLGGGVGDGDAAS 60
           MGK VE+LD G R+ ARFHSHCPQT R+YYHPP+N DD   HH  +F   GG  DG    
Sbjct: 55  MGKYVELLDLGVRVAARFHSHCPQTARLYYHPPSNHDDHHHHHHRDFHSSGGASDGSCPD 114

Query: 61  HQIVPCVAEPTAAAAAVLVVTVESNEFILYSV 91
           H++                  ++S E I+YSV
Sbjct: 115 HRL-----------------RIDSTELIVYSV 129

[Close]

BLAST of CSPI07G19050.1 vs. TrEMBL
Match: A0A059DI68_EUCGR (Uncharacterized protein OS=Eucalyptus grandis GN=EUGRSUZ_A02353 PE=4 SV=1)

HSP 1 Score: 85.9 bits (211), Expect = 2.8e-14
Identity = 36/61 (59.02%), Postives = 43/61 (70.49%), Query Frame = 1


Query: 1  MGKLVEILDAGARIVARFHSHCPQTGRMYYHPPANSDDGHHSEEFRLGGGVGDGDAASHQ 60
          MGK VE+LD G R+ ARFHSHCPQT R+YYHPP+N DD HH +      G GDG  A H+
Sbjct: 1  MGKYVELLDLGVRMAARFHSHCPQTARLYYHPPSNHDDLHHHDHHHSSCGAGDGPRADHR 60

Query: 61 I 62
          +
Sbjct: 61 L 61

[Close]

BLAST of CSPI07G19050.1 vs. TAIR10
Match: AT3G57450.1 (AT3G57450.1 unknown protein)

HSP 1 Score: 69.7 bits (169), Expect = 1.0e-12
Identity = 29/50 (58.00%), Postives = 36/50 (72.00%), Query Frame = 1


Query: 1  MGKLVEILDAGARIVARFHSHCPQTGRMYYHPPANSDDGHHSEEFRLGGG 51
          MGK  E+LD G RI ARFHSHCPQT R+YYHPP+++   H   +  +GGG
Sbjct: 1  MGKYTEMLDVGVRIAARFHSHCPQTARLYYHPPSDNHHHHGGVKDLIGGG 50

[Close]

BLAST of CSPI07G19050.1 vs. NCBI nr
Match: gi|700189875|gb|KGN45108.1| (hypothetical protein Csa_7G426490 [Cucumis sativus])

HSP 1 Score: 179.1 bits (453), Expect = 3.5e-42
Identity = 90/91 (98.90%), Postives = 90/91 (98.90%), Query Frame = 1


Query: 1  MGKLVEILDAGARIVARFHSHCPQTGRMYYHPPANSDDGHHSEEFRLGGGVGDGDAASHQ 60
          MGKLVEILDAGARIVARFHSHCPQTGRMYYHPPANSDDGHHSEEFRLGGGVGDGDAASHQ
Sbjct: 1  MGKLVEILDAGARIVARFHSHCPQTGRMYYHPPANSDDGHHSEEFRLGGGVGDGDAASHQ 60

Query: 61 IVPCVAEPT-AAAAAVLVVTVESNEFILYSV 91
          IVPCVAEPT AAAAAVLVVTVESNEFILYSV
Sbjct: 61 IVPCVAEPTAAAAAAVLVVTVESNEFILYSV 91

[Close]

BLAST of CSPI07G19050.1 vs. NCBI nr
Match: gi|703102381|ref|XP_010097445.1| (hypothetical protein L484_004679 [Morus notabilis])

HSP 1 Score: 94.7 bits (234), Expect = 8.6e-17
Identity = 51/92 (55.43%), Postives = 59/92 (64.13%), Query Frame = 1


Query: 1  MGKLVEILDAGARIVARFHSHCPQTGRMYYHPPANSDDGHHSEEFRL--GGGVGDGDAAS 60
          MGK VEILD G RIVARFHSHCPQT RMYYHPPAN+D+ HH+    L  GG  GDGD   
Sbjct: 1  MGKFVEILDQGVRIVARFHSHCPQTSRMYYHPPANADNNHHNNNHFLFYGGDGGDGDV-- 60

Query: 61 HQIVPCVAEPTAAAAAVLVVTVESNEFILYSV 91
           +++ C  +     A       E+ EFILYSV
Sbjct: 61 -KVMKCGPKAIGGGA-------ENKEFILYSV 82

[Close]

BLAST of CSPI07G19050.1 vs. NCBI nr
Match: gi|629100316|gb|KCW66081.1| (hypothetical protein EUGRSUZ_G03361 [Eucalyptus grandis])

HSP 1 Score: 92.4 bits (228), Expect = 4.3e-16
Identity = 50/90 (55.56%), Postives = 57/90 (63.33%), Query Frame = 1


Query: 1  MGKLVEILDAGARIVARFHSHCPQTGRMYYHPPANSDDGHHSEEFRLGGGVGDGDAASHQ 60
          M K VE+LDAG RI ARFHSHCPQT RMYYHPP+NSDD HH  +   GGG   G  AS Q
Sbjct: 1  MAKYVELLDAGVRIAARFHSHCPQTARMYYHPPSNSDDPHHGGDGGSGGGGAKG--ASAQ 60

Query: 61 IVPCVAEPTAAAAAVLVVTVESNEFILYSV 91
          + PC  +            V++ EFILYSV
Sbjct: 61 MRPCGHKAFGG--------VDTAEFILYSV 80

[Close]

BLAST of CSPI07G19050.1 vs. NCBI nr
Match: gi|629125742|gb|KCW90167.1| (hypothetical protein EUGRSUZ_A02351 [Eucalyptus grandis])

HSP 1 Score: 87.0 bits (214), Expect = 1.8e-14
Identity = 42/92 (45.65%), Postives = 52/92 (56.52%), Query Frame = 1


Query: 1   MGKLVEILDAGARIVARFHSHCPQTGRMYYHPPANSDD--GHHSEEFRLGGGVGDGDAAS 60
           MGK VE+LD G R+ ARFHSHCPQT R+YYHPP+N DD   HH  +F   GG  DG    
Sbjct: 55  MGKYVELLDLGVRVAARFHSHCPQTARLYYHPPSNHDDHHHHHHRDFHSSGGASDGSCPD 114

Query: 61  HQIVPCVAEPTAAAAAVLVVTVESNEFILYSV 91
           H++                  ++S E I+YSV
Sbjct: 115 HRL-----------------RIDSTELIVYSV 129

[Close]

BLAST of CSPI07G19050.1 vs. NCBI nr
Match: gi|629125744|gb|KCW90169.1| (hypothetical protein EUGRSUZ_A02353 [Eucalyptus grandis])

HSP 1 Score: 85.9 bits (211), Expect = 4.0e-14
Identity = 36/61 (59.02%), Postives = 43/61 (70.49%), Query Frame = 1


Query: 1  MGKLVEILDAGARIVARFHSHCPQTGRMYYHPPANSDDGHHSEEFRLGGGVGDGDAASHQ 60
          MGK VE+LD G R+ ARFHSHCPQT R+YYHPP+N DD HH +      G GDG  A H+
Sbjct: 1  MGKYVELLDLGVRMAARFHSHCPQTARLYYHPPSNHDDLHHHDHHHSSCGAGDGPRADHR 60

Query: 61 I 62
          +
Sbjct: 61 L 61

The following BLAST results are available for this feature:

BLAST of CSPI07G19050.1 vs. Swiss-Prot


Match Name	E-value	Identity	Description

BLAST of CSPI07G19050.1 vs. TrEMBL


Match Name	E-value	Identity	Description
A0A0A0K6I8_CUCSA	2.4e-42	98.90	Uncharacterized protein OS=Cucumis sativus GN=Csa_7G426490 PE=4 SV=1	[more]
W9R4I1_9ROSA	6.0e-17	55.43	Uncharacterized protein OS=Morus notabilis GN=L484_004679 PE=4 SV=1	[more]
A0A059BJM5_EUCGR	3.0e-16	55.56	Uncharacterized protein OS=Eucalyptus grandis GN=EUGRSUZ_G03361 PE=4 SV=1	[more]
A0A059DHX5_EUCGR	1.3e-14	45.65	Uncharacterized protein OS=Eucalyptus grandis GN=EUGRSUZ_A02351 PE=4 SV=1	[more]
A0A059DI68_EUCGR	2.8e-14	59.02	Uncharacterized protein OS=Eucalyptus grandis GN=EUGRSUZ_A02353 PE=4 SV=1	[more]

BLAST of CSPI07G19050.1 vs. TAIR10


Match Name	E-value	Identity	Description
AT3G57450.1	1.0e-12	58.00	unknown protein	[more]

BLAST of CSPI07G19050.1 vs. NCBI nr


Match Name	E-value	Identity	Description
gi\|700189875\|gb\|KGN45108.1\|	3.5e-42	98.90	hypothetical protein Csa_7G426490 [Cucumis sativus]	[more]
gi\|703102381\|ref\|XP_010097445.1\|	8.6e-17	55.43	hypothetical protein L484_004679 [Morus notabilis]	[more]
gi\|629100316\|gb\|KCW66081.1\|	4.3e-16	55.56	hypothetical protein EUGRSUZ_G03361 [Eucalyptus grandis]	[more]
gi\|629125742\|gb\|KCW90167.1\|	1.8e-14	45.65	hypothetical protein EUGRSUZ_A02351 [Eucalyptus grandis]	[more]
gi\|629125744\|gb\|KCW90169.1\|	4.0e-14	59.02	hypothetical protein EUGRSUZ_A02353 [Eucalyptus grandis]	[more]

Annotated Terms

The following terms have been associated with this mRNA:

Vocabulary: **INTERPRO**
Term	Definition

GO Annotation

GO Assignments

This mRNA is annotated with the following GO terms.

Category	Term Accession	Term Name
biological_process	GO:0008150	biological_process
cellular_component	GO:0005575	cellular_component
molecular_function	GO:0003674	molecular_function

Relationships

This mRNA is a part of the following gene feature(s):


Feature Name	Unique Name	Type
CSPI07G19050	CSPI07G19050	gene

The following polypeptide feature(s) derives from this mRNA:


Feature Name	Unique Name	Type
CSPI07G19050.1	CSPI07G19050.1-protein	polypeptide

The following five_prime_UTR feature(s) are a part of this mRNA:


Feature Name	Unique Name	Type
CSPI07G19050.1.utr5p1	CSPI07G19050.1.utr5p1	five_prime_UTR

The following CDS feature(s) are a part of this mRNA:


Feature Name	Unique Name	Type
CSPI07G19050.1.cds1	CSPI07G19050.1.cds1	CDS

The following three_prime_UTR feature(s) are a part of this mRNA:


Feature Name	Unique Name	Type
CSPI07G19050.1.utr3p1	CSPI07G19050.1.utr3p1	three_prime_UTR

InterPro

Analysis Name: InterPro Annotations of cucumber (PI183967)
Date Performed: 2017-01-17


IPR Term	IPR Description	Source	Source Term	Source Description	Alignment
None	No IPR available	PANTHER	PTHR33983	FAMILY NOT NAMED	coord: 1..58 score: 8.8