Carg03531 (gene) Silver-seed gourd | Cucurbit Genomics Database (CuGenDB)

Overview


Name	Carg03531
Type	gene
Organism	Cucurbita argyrosperma (Silver-seed gourd)
Description	Pituitary adenylate cyclase-activating polypeptide type I receptor like
Location	Cucurbita_argyrosperma_scaffold_006 : 507374 .. 507646 (+)

Genome Viewer

Gene Expression

Sequences

The following sequences are available for this feature:

Gene sequence (with intron)

Legend: polypeptideexonCDS

Hold the cursor over a type above to highlight its positions in the sequence below.

ATGGCGAAATTTGTGGAATTGTTGGATGTAGGAGTGAGAATGGCGGCGAGATTTCACGCTCACTGTCCCCAAACTGCTCGGCTTTACTATCATCCTCCCTCCGATCACGACGGCGACAACCACCACAACTATCTGCATCAGTTTTTTCAGGCCAGCGATGGCTTCCGGCACGGCGGACACTCGACGGACCTGGTGACGGGCTGTGGAGTGGAGACGGTAGCTATGGCTAGGGGTTTTGATGCCGAGATCGTGTTTCATACGGCAGATTTTTGA

mRNA sequence

ATGGCGAAATTTGTGGAATTGTTGGATGTAGGAGTGAGAATGGCGGCGAGATTTCACGCTCACTGTCCCCAAACTGCTCGGCTTTACTATCATCCTCCCTCCGATCACGACGGCGACAACCACCACAACTATCTGCATCAGTTTTTTCAGGCCAGCGATGGCTTCCGGCACGGCGGACACTCGACGGACCTGGTGACGGGCTGTGGAGTGGAGACGGTAGCTATGGCTAGGGGTTTTGATGCCGAGATCGTGTTTCATACGGCAGATTTTTGA

Coding sequence (CDS)

ATGGCGAAATTTGTGGAATTGTTGGATGTAGGAGTGAGAATGGCGGCGAGATTTCACGCTCACTGTCCCCAAACTGCTCGGCTTTACTATCATCCTCCCTCCGATCACGACGGCGACAACCACCACAACTATCTGCATCAGTTTTTTCAGGCCAGCGATGGCTTCCGGCACGGCGGACACTCGACGGACCTGGTGACGGGCTGTGGAGTGGAGACGGTAGCTATGGCTAGGGGTTTTGATGCCGAGATCGTGTTTCATACGGCAGATTTTTGA

Protein sequence

MAKFVELLDVGVRMAARFHAHCPQTARLYYHPPSDHDGDNHHNYLHQFFQASDGFRHGGHSTDLVTGCGVETVAMARGFDAEIVFHTADF

Homology

[Close]

BLAST of Carg03531 vs. NCBI nr
Match: XP_022154266.1 (uncharacterized protein LOC111021559 [Momordica charantia])

HSP 1 Score: 129.8 bits (325), Expect = 4.7e-27
Identity = 71/93 (76.34%), Postives = 73/93 (78.49%), Query Frame = 0


Query: 1  MAKFVELLDVGVRMAARFHAHCPQTARLYYHPPSDHDGDNHHNYLHQFFQASDGFRHGGH 60
          MAK VELLDVGVRMAARFHAHCPQTARLYYHPPSDHD D HH YLHQ   A DG   GGH
Sbjct: 1  MAKLVELLDVGVRMAARFHAHCPQTARLYYHPPSDHD-DQHH-YLHQILHAYDG---GGH 60

Query: 61 ST-DLVTGCGVETV--AMARGFDAEIVFHTADF 91
          ST   V+GCG+ET   A AR FD EIVFHTADF
Sbjct: 61 STAHQVSGCGIETAARARARSFDTEIVFHTADF 88

[Close]

BLAST of Carg03531 vs. NCBI nr
Match: XP_008443147.1 (PREDICTED: uncharacterized protein LOC103486822 [Cucumis melo])

HSP 1 Score: 123.2 bits (308), Expect = 4.4e-25
Identity = 63/92 (68.48%), Postives = 69/92 (75.00%), Query Frame = 0


Query: 1  MAKFVELLDVGVRMAARFHAHCPQTARLYYHPPSDH--DGDNHHNYLHQFFQASDGFRHG 60
          M KFVELLDVGVRMAARFH+HCPQTARLYYHPPSDH            Q FQA DG RHG
Sbjct: 1  MGKFVELLDVGVRMAARFHSHCPQTARLYYHPPSDHXXXXXXXXXXXXQIFQAYDGGRHG 60

Query: 61 GHSTDLVTGCGVETVAMARGFDAEIVFHTADF 91
          GHST+LVT  G++T+A    FDAE VFH+ADF
Sbjct: 61 GHSTELVTAYGMKTMATDGSFDAENVFHSADF 92

[Close]

BLAST of Carg03531 vs. NCBI nr
Match: KGN59359.1 (hypothetical protein Csa_3G813040 [Cucumis sativus])

HSP 1 Score: 97.4 bits (241), Expect = 2.6e-17
Identity = 56/93 (60.22%), Postives = 61/93 (65.59%), Query Frame = 0


Query: 1   MAKFVELLDVGVRMAARFHAHCPQTARLY---YHPPSDHDGDNHHNYLHQFFQASDGFRH 60
           M KFVELLDVGVRMAARFH+HCPQTARLY                   HQ FQA D    
Sbjct: 35  MGKFVELLDVGVRMAARFHSHCPQTARLYXXXXXXXXXXXXXXXXXXXHQIFQAYD---- 94

Query: 61  GGHSTDLVTGCGVETVAMARGFDAEIVFHTADF 91
           GGHST+LVT  G++TVAM   FDAE VFH+ADF
Sbjct: 95  GGHSTELVTAYGMKTVAMDGSFDAENVFHSADF 123

[Close]

BLAST of Carg03531 vs. NCBI nr
Match: XP_011652134.1 (PREDICTED: uncharacterized protein LOC105434988 [Cucumis sativus])

HSP 1 Score: 97.4 bits (241), Expect = 2.6e-17
Identity = 56/93 (60.22%), Postives = 61/93 (65.59%), Query Frame = 0


Query: 1  MAKFVELLDVGVRMAARFHAHCPQTARLY---YHPPSDHDGDNHHNYLHQFFQASDGFRH 60
          M KFVELLDVGVRMAARFH+HCPQTARLY                   HQ FQA D    
Sbjct: 1  MGKFVELLDVGVRMAARFHSHCPQTARLYXXXXXXXXXXXXXXXXXXXHQIFQAYD---- 60

Query: 61 GGHSTDLVTGCGVETVAMARGFDAEIVFHTADF 91
          GGHST+LVT  G++TVAM   FDAE VFH+ADF
Sbjct: 61 GGHSTELVTAYGMKTVAMDGSFDAENVFHSADF 89

[Close]

BLAST of Carg03531 vs. NCBI nr
Match: EOY09240.1 (Uncharacterized protein TCM_024641 [Theobroma cacao])

HSP 1 Score: 80.1 bits (196), Expect = 4.2e-12
Identity = 43/88 (48.86%), Postives = 60/88 (68.18%), Query Frame = 0


Query: 1  MAKFVELLDVGVRMAARFHAHCPQTARLYYHPPSDHDGDNHHNYLHQFFQASDGFRHGGH 60
          M K++ELLD GVR+AARFH+HCPQTARLYYHPPS+ +G  HH+Y H+  +A  G      
Sbjct: 1  MGKYMELLDAGVRIAARFHSHCPQTARLYYHPPSNPEG--HHDYHHE-ARAGSGSTGQVQ 60

Query: 61 STDLVTGCGVETVAMARGFDA-EIVFHT 88
             LV  CG +    A+G ++ E++F++
Sbjct: 61 DPTLVLSCGAKA---AKGLESTELIFYS 82

[Close]

BLAST of Carg03531 vs. TAIR10
Match: AT3G57450.1 (unknown protein)

HSP 1 Score: 53.5 bits (127), Expect = 7.7e-08
Identity = 22/28 (78.57%), Postives = 26/28 (92.86%), Query Frame = 0


Query: 1  MAKFVELLDVGVRMAARFHAHCPQTARL 29
          M K+ E+LDVGVR+AARFH+HCPQTARL
Sbjct: 1  MGKYTEMLDVGVRIAARFHSHCPQTARL 28

[Close]

BLAST of Carg03531 vs. TrEMBL
Match: tr|A0A1S3B7E5|A0A1S3B7E5_CUCME (uncharacterized protein LOC103486822 OS=Cucumis melo OX=3656 GN=LOC103486822 PE=4 SV=1)

HSP 1 Score: 123.2 bits (308), Expect = 2.9e-25
Identity = 63/92 (68.48%), Postives = 69/92 (75.00%), Query Frame = 0


Query: 1  MAKFVELLDVGVRMAARFHAHCPQTARLYYHPPSDH--DGDNHHNYLHQFFQASDGFRHG 60
          M KFVELLDVGVRMAARFH+HCPQTARLYYHPPSDH            Q FQA DG RHG
Sbjct: 1  MGKFVELLDVGVRMAARFHSHCPQTARLYYHPPSDHXXXXXXXXXXXXQIFQAYDGGRHG 60

Query: 61 GHSTDLVTGCGVETVAMARGFDAEIVFHTADF 91
          GHST+LVT  G++T+A    FDAE VFH+ADF
Sbjct: 61 GHSTELVTAYGMKTMATDGSFDAENVFHSADF 92

[Close]

BLAST of Carg03531 vs. TrEMBL
Match: tr|A0A0A0LEL3|A0A0A0LEL3_CUCSA (Uncharacterized protein OS=Cucumis sativus OX=3659 GN=Csa_3G813040 PE=4 SV=1)

HSP 1 Score: 97.4 bits (241), Expect = 1.7e-17
Identity = 56/93 (60.22%), Postives = 61/93 (65.59%), Query Frame = 0


Query: 1   MAKFVELLDVGVRMAARFHAHCPQTARLY---YHPPSDHDGDNHHNYLHQFFQASDGFRH 60
           M KFVELLDVGVRMAARFH+HCPQTARLY                   HQ FQA D    
Sbjct: 35  MGKFVELLDVGVRMAARFHSHCPQTARLYXXXXXXXXXXXXXXXXXXXHQIFQAYD---- 94

Query: 61  GGHSTDLVTGCGVETVAMARGFDAEIVFHTADF 91
           GGHST+LVT  G++TVAM   FDAE VFH+ADF
Sbjct: 95  GGHSTELVTAYGMKTVAMDGSFDAENVFHSADF 123

[Close]

BLAST of Carg03531 vs. TrEMBL
Match: tr|A0A061EVZ9|A0A061EVZ9_THECC (Uncharacterized protein OS=Theobroma cacao OX=3641 GN=TCM_024641 PE=4 SV=1)

HSP 1 Score: 80.1 bits (196), Expect = 2.8e-12
Identity = 43/88 (48.86%), Postives = 60/88 (68.18%), Query Frame = 0


Query: 1  MAKFVELLDVGVRMAARFHAHCPQTARLYYHPPSDHDGDNHHNYLHQFFQASDGFRHGGH 60
          M K++ELLD GVR+AARFH+HCPQTARLYYHPPS+ +G  HH+Y H+  +A  G      
Sbjct: 1  MGKYMELLDAGVRIAARFHSHCPQTARLYYHPPSNPEG--HHDYHHE-ARAGSGSTGQVQ 60

Query: 61 STDLVTGCGVETVAMARGFDA-EIVFHT 88
             LV  CG +    A+G ++ E++F++
Sbjct: 61 DPTLVLSCGAKA---AKGLESTELIFYS 82

[Close]

BLAST of Carg03531 vs. TrEMBL
Match: tr|A0A2P5EN05|A0A2P5EN05_9ROSA (Uncharacterized protein OS=Trema orientalis OX=63057 GN=TorRG33x02_172970 PE=4 SV=1)

HSP 1 Score: 77.0 bits (188), Expect = 2.4e-11
Identity = 35/62 (56.45%), Postives = 41/62 (66.13%), Query Frame = 0


Query: 1  MAKFVELLDVGVRMAARFHAHCPQTARLYYHPPSDHDGDNHHNYLHQFFQASDGFRHGGH 60
          M KFVELLDVGVR+AARFH+HCPQT R+YYHPPS    D  H+Y H  +        G  
Sbjct: 1  MGKFVELLDVGVRIAARFHSHCPQTGRMYYHPPSGTPDDQDHDYYHHLYSTLKAAGQGSD 60

Query: 61 ST 63
          +T
Sbjct: 61 TT 62

[Close]

BLAST of Carg03531 vs. TrEMBL
Match: tr|A0A2P5AQM6|A0A2P5AQM6_PARAD (Uncharacterized protein OS=Parasponia andersonii OX=3476 GN=PanWU01x14_309390 PE=4 SV=1)

HSP 1 Score: 75.9 bits (185), Expect = 5.3e-11
Identity = 34/62 (54.84%), Postives = 41/62 (66.13%), Query Frame = 0


Query: 1  MAKFVELLDVGVRMAARFHAHCPQTARLYYHPPSDHDGDNHHNYLHQFFQASDGFRHGGH 60
          M KFVELLD GVR+AARFH+HCPQT R+YYHPPS    D  H++ H  +        GG 
Sbjct: 1  MGKFVELLDAGVRIAARFHSHCPQTGRMYYHPPSGTPDDQDHDHYHHLYSTLKAAGQGGD 60

Query: 61 ST 63
          +T
Sbjct: 61 TT 62

The following BLAST results are available for this feature:

BLAST of Carg03531 vs. NCBI nr


Match Name	E-value	Identity	Description
XP_022154266.1	4.7e-27	76.34	uncharacterized protein LOC111021559 [Momordica charantia]	[more]
XP_008443147.1	4.4e-25	68.48	PREDICTED: uncharacterized protein LOC103486822 [Cucumis melo]	[more]
KGN59359.1	2.6e-17	60.22	hypothetical protein Csa_3G813040 [Cucumis sativus]	[more]
XP_011652134.1	2.6e-17	60.22	PREDICTED: uncharacterized protein LOC105434988 [Cucumis sativus]	[more]
EOY09240.1	4.2e-12	48.86	Uncharacterized protein TCM_024641 [Theobroma cacao]	[more]

BLAST of Carg03531 vs. TAIR10


Match Name	E-value	Identity	Description
AT3G57450.1	7.7e-08	78.57	unknown protein	[more]

BLAST of Carg03531 vs. Swiss-Prot


Match Name	E-value	Identity	Description

BLAST of Carg03531 vs. TrEMBL


Match Name	E-value	Identity	Description
tr\|A0A1S3B7E5\|A0A1S3B7E5_CUCME	2.9e-25	68.48	uncharacterized protein LOC103486822 OS=Cucumis melo OX=3656 GN=LOC103486822 PE=...	[more]
tr\|A0A0A0LEL3\|A0A0A0LEL3_CUCSA	1.7e-17	60.22	Uncharacterized protein OS=Cucumis sativus OX=3659 GN=Csa_3G813040 PE=4 SV=1	[more]
tr\|A0A061EVZ9\|A0A061EVZ9_THECC	2.8e-12	48.86	Uncharacterized protein OS=Theobroma cacao OX=3641 GN=TCM_024641 PE=4 SV=1	[more]
tr\|A0A2P5EN05\|A0A2P5EN05_9ROSA	2.4e-11	56.45	Uncharacterized protein OS=Trema orientalis OX=63057 GN=TorRG33x02_172970 PE=4 S...	[more]
tr\|A0A2P5AQM6\|A0A2P5AQM6_PARAD	5.3e-11	54.84	Uncharacterized protein OS=Parasponia andersonii OX=3476 GN=PanWU01x14_309390 PE...	[more]

GO Annotation

GO Assignments

This gene is annotated with the following GO terms.

Category	Term Accession	Term Name
biological_process	GO:0008150	biological_process
cellular_component	GO:0005575	cellular_component
molecular_function	GO:0003674	molecular_function

Relationships

The following mRNA feature(s) are a part of this gene:


Feature Name	Unique Name	Type
Carg03531-RA	Carg03531-RA	mRNA

InterPro

Analysis Name: InterPro Annotations of silver-seed gourd
Date Performed: 2019-03-07


IPR Term	IPR Description	Source	Source Term	Source Description	Alignment
None	No IPR available	PANTHER	PTHR33983	FAMILY NOT NAMED	coord: 1..46

Synteny

The following gene(s) are orthologous to this gene:


Gene	Orthologue	Organism	Block
Carg03531	Cla017492	Watermelon (97103) v1	carwmB0237
Carg03531	MELO3C009681	Melon (DHL92) v3.5.1	carmeB0251
Carg03531	ClCG10G017020	Watermelon (Charleston Gray)	carwcgB0240
Carg03531	CmaCh06G000670	Cucurbita maxima (Rimu)	carcmaB0349
Carg03531	CmaCh17G009670	Cucurbita maxima (Rimu)	carcmaB0344
Carg03531	CmaCh14G004590	Cucurbita maxima (Rimu)	carcmaB0343
Carg03531	CmoCh14G004660	Cucurbita moschata (Rifu)	carcmoB0347
Carg03531	Lsi03G016860	Bottle gourd (USVL1VR-Ls)	carlsiB225
Carg03531	CsGy3G034490	Cucumber (Gy14) v2	carcgybB0263
Carg03531	MELO3C009681.2	Melon (DHL92) v3.6.1	carmedB0261
Carg03531	CsaV3_3G039380	Cucumber (Chinese Long) v3	carcucB0279
Carg03531	Cla97C10G199870	Watermelon (97103) v2	carwmbB0254

The following gene(s) are paralogous to this gene:


Gene	Paralogue	Organism	Block
Carg03531	Carg01256	Silver-seed gourd	carcarB182
Carg03531	Carg18662	Silver-seed gourd	carcarB288

The following block(s) are covering this gene:


Gene	Organism	Block
Carg03531	Cucumber (Gy14) v1	carcgyB0296
Carg03531	Cucurbita moschata (Rifu)	carcmoB0350
Carg03531	Cucurbita pepo (Zucchini)	carcpeB0353
Carg03531	Cucurbita pepo (Zucchini)	carcpeB0355
Carg03531	Wild cucumber (PI 183967)	carcpiB0280
Carg03531	Cucumber (Chinese Long) v2	carcuB0276
Carg03531	Wax gourd	carwgoB0320