CmaCh15G005210 (gene) Cucurbita maxima (Rimu) | Cucurbit Genomics Database (CuGenDB)

Overview


Name	CmaCh15G005210
Type	gene
Organism	Cucurbita maxima (Cucurbita maxima (Rimu))
Description	Xylene monooxygenase electron transfer component
Location	Cma_Chr15 : 2406548 .. 2407000 (+)

Genome Viewer

Gene Expression

Sequences

The following sequences are available for this feature:

Gene sequence (with intron)

Legend: exonCDS

Hold the cursor over a type above to highlight its positions in the sequence below.

ATGTCGGCTATCAATCTTCCAACATCTTGCCTGATCAAAAGTGCTACACCAAGGAGATCCTGTGCCCTAGTGCAGAGGCCATCTTCTTTGGGTTCTTTTAGGAGTGTATCCCGGGCATTTGGATTGAAGTCTTCTTCATTCAAAGTGACAGCAATGGCTACTACTTACAAAGTGAAATTGATTGGACCAAACGGTGAAGAGAATGAGTTTGAGGCCCCTGATGATGCTTACATTCTGGACTCAGCTGAGGATGCTGGATTGGATCTACCTTACTCTTGCAGGGCTGGAGCTTGCTCTACTTGCGCCGGTCAAGTTGTTTCTGGGACAGTGGACCAATCAGATGGATCGTTCTTGGACGACAATCAAATGGAGAAGGGTTATGTCCTGACCTGCGTTGCATACCCACAATCCGACTGTGTCATCCACACACACAAGGAAGGTGATTTGTACTGA

mRNA sequence

ATGTCGGCTATCAATCTTCCAACATCTTGCCTGATCAAAAGTGCTACACCAAGGAGATCCTGTGCCCTAGTGCAGAGGCCATCTTCTTTGGGTTCTTTTAGGAGTGTATCCCGGGCATTTGGATTGAAGTCTTCTTCATTCAAAGTGACAGCAATGGCTACTACTTACAAAGTGAAATTGATTGGACCAAACGGTGAAGAGAATGAGTTTGAGGCCCCTGATGATGCTTACATTCTGGACTCAGCTGAGGATGCTGGATTGGATCTACCTTACTCTTGCAGGGCTGGAGCTTGCTCTACTTGCGCCGGTCAAGTTGTTTCTGGGACAGTGGACCAATCAGATGGATCGTTCTTGGACGACAATCAAATGGAGAAGGGTTATGTCCTGACCTGCGTTGCATACCCACAATCCGACTGTGTCATCCACACACACAAGGAAGGTGATTTGTACTGA

Coding sequence (CDS)

ATGTCGGCTATCAATCTTCCAACATCTTGCCTGATCAAAAGTGCTACACCAAGGAGATCCTGTGCCCTAGTGCAGAGGCCATCTTCTTTGGGTTCTTTTAGGAGTGTATCCCGGGCATTTGGATTGAAGTCTTCTTCATTCAAAGTGACAGCAATGGCTACTACTTACAAAGTGAAATTGATTGGACCAAACGGTGAAGAGAATGAGTTTGAGGCCCCTGATGATGCTTACATTCTGGACTCAGCTGAGGATGCTGGATTGGATCTACCTTACTCTTGCAGGGCTGGAGCTTGCTCTACTTGCGCCGGTCAAGTTGTTTCTGGGACAGTGGACCAATCAGATGGATCGTTCTTGGACGACAATCAAATGGAGAAGGGTTATGTCCTGACCTGCGTTGCATACCCACAATCCGACTGTGTCATCCACACACACAAGGAAGGTGATTTGTACTGA

Protein sequence

MSAINLPTSCLIKSATPRRSCALVQRPSSLGSFRSVSRAFGLKSSSFKVTAMATTYKVKLIGPNGEENEFEAPDDAYILDSAEDAGLDLPYSCRAGACSTCAGQVVSGTVDQSDGSFLDDNQMEKGYVLTCVAYPQSDCVIHTHKEGDLY

Homology

[Close]

BLAST of CmaCh15G005210 vs. Swiss-Prot
Match: FER3_MAIZE (Ferredoxin-3, chloroplastic OS=Zea mays GN=FDX3 PE=2 SV=1)

HSP 1 Score: 192.2 bits (487), Expect = 4.1e-48
Identity = 99/153 (64.71%), Postives = 118/153 (77.12%), Query Frame = 1


Query: 1   MSAINLPTSCLIKS--ATPRRSCALVQRPSSLGSFRSVSRAFGLKSSS-FKVTAMATTYK 60
           MS     TSC +     T + S   V+ PSSL  F  V++   LK+S    V+AMA  YK
Sbjct: 1   MSTSTFATSCTLLGNVRTTQASQTAVKSPSSLSFFSQVTKVPSLKTSKKLDVSAMAV-YK 60

Query: 61  VKLIGPNGEENEFEAPDDAYILDSAEDAGLDLPYSCRAGACSTCAGQVVSGTVDQSDGSF 120
           VKL+GP GEE+EF+APDDAYILD+AE AG++LPYSCRAGACSTCAG++ SG+VDQSDGSF
Sbjct: 61  VKLVGPEGEEHEFDAPDDAYILDAAETAGVELPYSCRAGACSTCAGKIESGSVDQSDGSF 120

Query: 121 LDDNQMEKGYVLTCVAYPQSDCVIHTHKEGDLY 151
           LDD Q E+GYVLTCV+YP+SDCVIHTHKEGDLY
Sbjct: 121 LDDGQQEEGYVLTCVSYPKSDCVIHTHKEGDLY 152

[Close]

BLAST of CmaCh15G005210 vs. Swiss-Prot
Match: FER3_ARATH (Ferredoxin-3, chloroplastic OS=Arabidopsis thaliana GN=FD3 PE=1 SV=1)

HSP 1 Score: 187.6 bits (475), Expect = 1.0e-46
Identity = 92/144 (63.89%), Postives = 114/144 (79.17%), Query Frame = 1


Query: 8   TSCLIKSATPRRSCALVQRPSSLGSFRSVSRAFGLKSSSFKVTA-MATTYKVKLIGPNGE 67
           T  +++S T  +         S+GS + VSR+FGLK S+    A M+  YKVKL+GP+G+
Sbjct: 12  TKAVLRSQTTNKLITNKSYNLSVGSTKRVSRSFGLKCSANSGGATMSAVYKVKLLGPDGQ 71

Query: 68  ENEFEAPDDAYILDSAEDAGLDLPYSCRAGACSTCAGQVVSGTVDQSDGSFLDDNQMEKG 127
           E+EFE  DD YILD+AE+AG+DLPYSCRAGACSTCAGQ+VSG VDQSDGSFL+D+ +EKG
Sbjct: 72  EDEFEVQDDQYILDAAEEAGVDLPYSCRAGACSTCAGQIVSGNVDQSDGSFLEDSHLEKG 131

Query: 128 YVLTCVAYPQSDCVIHTHKEGDLY 151
           YVLTCVAYPQSDCVIHTHKE +L+
Sbjct: 132 YVLTCVAYPQSDCVIHTHKETELF 155

[Close]

BLAST of CmaCh15G005210 vs. Swiss-Prot
Match: FER2_RAPSA (Ferredoxin, root R-B2 OS=Raphanus sativus PE=1 SV=1)

HSP 1 Score: 168.7 bits (426), Expect = 4.9e-41
Identity = 75/98 (76.53%), Postives = 87/98 (88.78%), Query Frame = 1


Query: 53  ATTYKVKLIGPNGEENEFEAPDDAYILDSAEDAGLDLPYSCRAGACSTCAGQVVSGTVDQ 112
           +  YKVKLIGP GEENEFE  DD +ILD+AE+AG+DLPYSCRAGACSTCAGQ+V G VDQ
Sbjct: 1   SAVYKVKLIGPEGEENEFEVQDDQFILDAAEEAGVDLPYSCRAGACSTCAGQIVKGQVDQ 60

Query: 113 SDGSFLDDNQMEKGYVLTCVAYPQSDCVIHTHKEGDLY 151
           S+GSFL+D+  EKG+VLTCVAYPQSDCVIHTHKE +L+
Sbjct: 61  SEGSFLEDDHFEKGFVLTCVAYPQSDCVIHTHKETELF 98

[Close]

BLAST of CmaCh15G005210 vs. Swiss-Prot
Match: FER6_MAIZE (Ferredoxin-6, chloroplastic OS=Zea mays GN=FDX6 PE=2 SV=1)

HSP 1 Score: 167.2 bits (422), Expect = 1.4e-40
Identity = 78/124 (62.90%), Postives = 101/124 (81.45%), Query Frame = 1


Query: 28  SSLGSFRSVSRAFGLK-SSSFKVTAMATTYKVKLIGPNGEENEFEAPDDAYILDSAEDAG 87
           S  G  R  +RA G + SS F  +A A  +KVKL+GP+G E+EFEAPDD YIL++AE AG
Sbjct: 32  SFAGHARQAARASGPRLSSRFVASAAAVLHKVKLVGPDGTEHEFEAPDDTYILEAAETAG 91

Query: 88  LDLPYSCRAGACSTCAGQVVSGTVDQSDGSFLDDNQMEKGYVLTCVAYPQSDCVIHTHKE 147
           ++LP+SCRAG+CSTCAG++ +G VDQS+GSFLDD QM +GY+LTC++YP++DCVIHTHKE
Sbjct: 92  VELPFSCRAGSCSTCAGRMSAGEVDQSEGSFLDDGQMAEGYLLTCISYPKADCVIHTHKE 151

Query: 148 GDLY 151
            DLY
Sbjct: 152 EDLY 155

[Close]

BLAST of CmaCh15G005210 vs. Swiss-Prot
Match: FER1_RAPSA (Ferredoxin, root R-B1 OS=Raphanus sativus PE=1 SV=1)

HSP 1 Score: 166.8 bits (421), Expect = 1.8e-40
Identity = 74/98 (75.51%), Postives = 87/98 (88.78%), Query Frame = 1


Query: 53  ATTYKVKLIGPNGEENEFEAPDDAYILDSAEDAGLDLPYSCRAGACSTCAGQVVSGTVDQ 112
           +  YKVKLIGP+G+ENEF+ PDD YILD+AE+AG+DLPYSCRAGACSTCAG++  G VDQ
Sbjct: 1   SAVYKVKLIGPDGQENEFDVPDDQYILDAAEEAGVDLPYSCRAGACSTCAGKIEKGQVDQ 60

Query: 113 SDGSFLDDNQMEKGYVLTCVAYPQSDCVIHTHKEGDLY 151
           SDGSFL+D+  EKGYVLTCVAYPQSD VIHTHKE +L+
Sbjct: 61  SDGSFLEDHHFEKGYVLTCVAYPQSDLVIHTHKEEELF 98

[Close]

BLAST of CmaCh15G005210 vs. TrEMBL
Match: A0A0A0KNA3_CUCSA (Uncharacterized protein OS=Cucumis sativus GN=Csa_5G413260 PE=4 SV=1)

HSP 1 Score: 258.1 bits (658), Expect = 6.8e-66
Identity = 131/150 (87.33%), Postives = 139/150 (92.67%), Query Frame = 1


Query: 1   MSAINLPTSCLIKSATPRRSCALVQRPSSLGSFRSVSRAFGLKSSSFKVTAMATTYKVKL 60
           MS + LPTS LIK  T RRS ALVQRPSSL SFRSVSR+FGLKSS FKV+AMA +YKVKL
Sbjct: 1   MSTVTLPTSSLIKPPTLRRSNALVQRPSSLCSFRSVSRSFGLKSSQFKVSAMA-SYKVKL 60

Query: 61  IGPNGEENEFEAPDDAYILDSAEDAGLDLPYSCRAGACSTCAGQVVSGTVDQSDGSFLDD 120
           IGP+GEENEF+APDDAYILDSAE+AGLDLPYSCRAGACSTCAGQVVSGTVDQ+DGSFLDD
Sbjct: 61  IGPDGEENEFDAPDDAYILDSAENAGLDLPYSCRAGACSTCAGQVVSGTVDQTDGSFLDD 120

Query: 121 NQMEKGYVLTCVAYPQSDCVIHTHKEGDLY 151
            QMEKGYVLTCVAYPQSDCVIHTHKEGDLY
Sbjct: 121 KQMEKGYVLTCVAYPQSDCVIHTHKEGDLY 149

[Close]

BLAST of CmaCh15G005210 vs. TrEMBL
Match: A0A067DNH4_CITSI (Uncharacterized protein OS=Citrus sinensis GN=CISIN_1g031979mg PE=4 SV=1)

HSP 1 Score: 234.6 bits (597), Expect = 8.0e-59
Identity = 114/150 (76.00%), Postives = 132/150 (88.00%), Query Frame = 1


Query: 1   MSAINLPTSCLIKSATPRRSCALVQRPSSLGSFRSVSRAFGLKSSSFKVTAMATTYKVKL 60
           MS + LPTSCL ++A   +  +LV+ P+SLGS RSVS+AFGLK SSFK +AMA  YKVKL
Sbjct: 1   MSTVRLPTSCLFQAAPRSKKFSLVKSPASLGSTRSVSKAFGLKCSSFKASAMAV-YKVKL 60

Query: 61  IGPNGEENEFEAPDDAYILDSAEDAGLDLPYSCRAGACSTCAGQVVSGTVDQSDGSFLDD 120
           IGPNGEENEF+APDDAYI+DSAED G++LPYSCRAGACSTCAGQ+VSG+VDQSDGSFLDD
Sbjct: 61  IGPNGEENEFDAPDDAYIIDSAEDTGMELPYSCRAGACSTCAGQMVSGSVDQSDGSFLDD 120

Query: 121 NQMEKGYVLTCVAYPQSDCVIHTHKEGDLY 151
            QMEKG+VLTCVAYP SDCVI+THKE +LY
Sbjct: 121 KQMEKGFVLTCVAYPTSDCVIYTHKESELY 149

[Close]

BLAST of CmaCh15G005210 vs. TrEMBL
Match: V4TZC2_9ROSI (Uncharacterized protein OS=Citrus clementina GN=CICLE_v10016676mg PE=4 SV=1)

HSP 1 Score: 234.2 bits (596), Expect = 1.0e-58
Identity = 114/150 (76.00%), Postives = 131/150 (87.33%), Query Frame = 1


Query: 1   MSAINLPTSCLIKSATPRRSCALVQRPSSLGSFRSVSRAFGLKSSSFKVTAMATTYKVKL 60
           MS + LPTSCL ++A   +  +LV+ P SLGS RSVS+AFGLK SSFK +AMA  YKVKL
Sbjct: 1   MSTVRLPTSCLFQAAPRSKKFSLVKSPGSLGSTRSVSKAFGLKCSSFKASAMAV-YKVKL 60

Query: 61  IGPNGEENEFEAPDDAYILDSAEDAGLDLPYSCRAGACSTCAGQVVSGTVDQSDGSFLDD 120
           IGPNGEENEF+APDDAYI+DSAED G++LPYSCRAGACSTCAGQ+VSG+VDQSDGSFLDD
Sbjct: 61  IGPNGEENEFDAPDDAYIIDSAEDTGMELPYSCRAGACSTCAGQMVSGSVDQSDGSFLDD 120

Query: 121 NQMEKGYVLTCVAYPQSDCVIHTHKEGDLY 151
            QMEKG+VLTCVAYP SDCVI+THKE +LY
Sbjct: 121 KQMEKGFVLTCVAYPTSDCVIYTHKESELY 149

[Close]

BLAST of CmaCh15G005210 vs. TrEMBL
Match: V4U9R4_9ROSI (Uncharacterized protein OS=Citrus clementina GN=CICLE_v10016676mg PE=4 SV=1)

HSP 1 Score: 234.2 bits (596), Expect = 1.0e-58
Identity = 114/150 (76.00%), Postives = 131/150 (87.33%), Query Frame = 1


Query: 1   MSAINLPTSCLIKSATPRRSCALVQRPSSLGSFRSVSRAFGLKSSSFKVTAMATTYKVKL 60
           MS + LPTSCL ++A   +  +LV+ P SLGS RSVS+AFGLK SSFK +AMA  YKVKL
Sbjct: 65  MSTVRLPTSCLFQAAPRSKKFSLVKSPGSLGSTRSVSKAFGLKCSSFKASAMAV-YKVKL 124

Query: 61  IGPNGEENEFEAPDDAYILDSAEDAGLDLPYSCRAGACSTCAGQVVSGTVDQSDGSFLDD 120
           IGPNGEENEF+APDDAYI+DSAED G++LPYSCRAGACSTCAGQ+VSG+VDQSDGSFLDD
Sbjct: 125 IGPNGEENEFDAPDDAYIIDSAEDTGMELPYSCRAGACSTCAGQMVSGSVDQSDGSFLDD 184

Query: 121 NQMEKGYVLTCVAYPQSDCVIHTHKEGDLY 151
            QMEKG+VLTCVAYP SDCVI+THKE +LY
Sbjct: 185 KQMEKGFVLTCVAYPTSDCVIYTHKESELY 213

[Close]

BLAST of CmaCh15G005210 vs. TrEMBL
Match: B9RPT1_RICCO (Ferredoxin-3, chloroplast, putative OS=Ricinus communis GN=RCOM_1539220 PE=4 SV=1)

HSP 1 Score: 232.6 bits (592), Expect = 3.0e-58
Identity = 110/157 (70.06%), Postives = 134/157 (85.35%), Query Frame = 1


Query: 1   MSAINLPTSCLIKS-------ATPRRSCALVQRPSSLGSFRSVSRAFGLKSSSFKVTAMA 60
           MS + LPTSCL++S       A+  +SCAL++   S GS ++VS+AFGLKSSSF+V+AM+
Sbjct: 1   MSTVRLPTSCLVRSVPLSSKAASMDKSCALIKSSCSFGSVKNVSKAFGLKSSSFRVSAMS 60

Query: 61  TTYKVKLIGPNGEENEFEAPDDAYILDSAEDAGLDLPYSCRAGACSTCAGQVVSGTVDQS 120
             YKVKLIGPNGEE+EF+APDD Y+LD+AE+AG++LPYSCRAGACSTCAGQ+ SG+VDQS
Sbjct: 61  KVYKVKLIGPNGEESEFDAPDDTYVLDAAENAGVELPYSCRAGACSTCAGQLASGSVDQS 120

Query: 121 DGSFLDDNQMEKGYVLTCVAYPQSDCVIHTHKEGDLY 151
           DGSFL D QMEKGYVLTC++YP SDCVIHTHKEGDLY
Sbjct: 121 DGSFLSDEQMEKGYVLTCISYPTSDCVIHTHKEGDLY 157

[Close]

BLAST of CmaCh15G005210 vs. TAIR10
Match: AT2G27510.1 (AT2G27510.1 ferredoxin 3)

HSP 1 Score: 187.6 bits (475), Expect = 5.7e-48
Identity = 92/144 (63.89%), Postives = 114/144 (79.17%), Query Frame = 1


Query: 8   TSCLIKSATPRRSCALVQRPSSLGSFRSVSRAFGLKSSSFKVTA-MATTYKVKLIGPNGE 67
           T  +++S T  +         S+GS + VSR+FGLK S+    A M+  YKVKL+GP+G+
Sbjct: 12  TKAVLRSQTTNKLITNKSYNLSVGSTKRVSRSFGLKCSANSGGATMSAVYKVKLLGPDGQ 71

Query: 68  ENEFEAPDDAYILDSAEDAGLDLPYSCRAGACSTCAGQVVSGTVDQSDGSFLDDNQMEKG 127
           E+EFE  DD YILD+AE+AG+DLPYSCRAGACSTCAGQ+VSG VDQSDGSFL+D+ +EKG
Sbjct: 72  EDEFEVQDDQYILDAAEEAGVDLPYSCRAGACSTCAGQIVSGNVDQSDGSFLEDSHLEKG 131

Query: 128 YVLTCVAYPQSDCVIHTHKEGDLY 151
           YVLTCVAYPQSDCVIHTHKE +L+
Sbjct: 132 YVLTCVAYPQSDCVIHTHKETELF 155

[Close]

BLAST of CmaCh15G005210 vs. TAIR10
Match: AT1G10960.1 (AT1G10960.1 ferredoxin 1)

HSP 1 Score: 155.2 bits (391), Expect = 3.1e-38
Identity = 87/144 (60.42%), Postives = 106/144 (73.61%), Query Frame = 1


Query: 8   TSCLIKSATPRRSCALVQRPSSLGS--FRSVSRAFGLKSSSFK---VTAMATTYKVKLIG 67
           +S ++ ++  RR     Q P SL S  F +    FGLKSS+ +   VTAMAT YKVK I 
Sbjct: 7   SSAIVSTSFLRRQ----QTPISLRSLPFANTQSLFGLKSSTARGGRVTAMAT-YKVKFIT 66

Query: 68  PNGEENEFEAPDDAYILDSAEDAGLDLPYSCRAGACSTCAGQVVSGTVDQSDGSFLDDNQ 127
           P GE+ E E  +D Y+LD+AE+AGLDLPYSCRAG+CS+CAG+VVSG++DQSD SFLDD Q
Sbjct: 67  PEGEQ-EVECEEDVYVLDAAEEAGLDLPYSCRAGSCSSCAGKVVSGSIDQSDQSFLDDEQ 126

Query: 128 MEKGYVLTCVAYPQSDCVIHTHKE 147
           M +GYVLTCVAYP SD VI THKE
Sbjct: 127 MSEGYVLTCVAYPTSDVVIETHKE 144

[Close]

BLAST of CmaCh15G005210 vs. TAIR10
Match: AT1G60950.1 (AT1G60950.1 2Fe-2S ferredoxin-like superfamily protein)

HSP 1 Score: 146.7 bits (369), Expect = 1.1e-35
Identity = 85/147 (57.82%), Postives = 105/147 (71.43%), Query Frame = 1


Query: 8   TSCLIKSATPRRSCALVQRPSSLGSFRSVSRA--FGLKSSSFK---VTAMATTYKVKLIG 67
           +S ++ ++  RRS A    P SL S  S +    FGLKS + +   VTAMAT YKVK I 
Sbjct: 7   SSAIVGTSFIRRSPA----PISLRSLPSANTQSLFGLKSGTARGGRVTAMAT-YKVKFIT 66

Query: 68  PNGEENEFEAPDDAYILDSAEDAGLDLPYSCRAGACSTCAGQVVSGTVDQSDGSFLDDNQ 127
           P GE  E E  DD Y+LD+AE+AG+DLPYSCRAG+CS+CAG+VVSG+VDQSD SFLDD Q
Sbjct: 67  PEGEL-EVECDDDVYVLDAAEEAGIDLPYSCRAGSCSSCAGKVVSGSVDQSDQSFLDDEQ 126

Query: 128 MEKGYVLTCVAYPQSDCVIHTHKEGDL 150
           + +G+VLTC AYP SD  I THKE D+
Sbjct: 127 IGEGFVLTCAAYPTSDVTIETHKEEDI 147

[Close]

BLAST of CmaCh15G005210 vs. TAIR10
Match: AT5G10000.1 (AT5G10000.1 ferredoxin 4)

HSP 1 Score: 137.9 bits (346), Expect = 5.2e-33
Identity = 65/112 (58.04%), Postives = 83/112 (74.11%), Query Frame = 1


Query: 40  FGLKSS--SFKVTAMATTYKVKLIGPNGEENEFEAPDDAYILDSAEDAGLDLPYSCRAGA 99
           FGL SS  +F       + KVKLI P GEE E E  +D  IL+SAE+AGL+LPYSCR+G 
Sbjct: 36  FGLSSSRGNFGKVFAKESRKVKLISPEGEEQEIEGNEDCCILESAENAGLELPYSCRSGT 95

Query: 100 CSTCAGQVVSGTVDQSDGSFLDDNQMEKGYVLTCVAYPQSDCVIHTHKEGDL 150
           C TC G++VSG VDQS GSFL++ Q++KGY+LTC+A P  DCV++THK+ DL
Sbjct: 96  CGTCCGKLVSGKVDQSLGSFLEEEQIQKGYILTCIALPLEDCVVYTHKQSDL 147

[Close]

BLAST of CmaCh15G005210 vs. TAIR10
Match: AT4G14890.1 (AT4G14890.1 2Fe-2S ferredoxin-like superfamily protein)

HSP 1 Score: 89.7 bits (221), Expect = 1.6e-18
Identity = 45/98 (45.92%), Postives = 60/98 (61.22%), Query Frame = 1


Query: 52  MATTYKVKLIGPNGEENEFEAPDDAYILDSAEDAGLDLPYSCRAGACSTCAGQVVSGTVD 111
           +A  YKV ++  +G+  E E   D  IL  A D+GLD+PY C  G C TC  ++V+GTVD
Sbjct: 49  IARAYKV-VVEHDGKTTELEVEPDETILSKALDSGLDVPYDCNLGVCMTCPAKLVTGTVD 108

Query: 112 QSDGSFLDDNQMEKGYVLTCVAYPQSDCVIHTHKEGDL 150
           QS G  L D+ +E+GY L C +YP SDC I    E +L
Sbjct: 109 QS-GGMLSDDVVERGYTLLCASYPTSDCHIKMIPEEEL 144

[Close]

BLAST of CmaCh15G005210 vs. NCBI nr
Match: gi|659113488|ref|XP_008456600.1| (PREDICTED: ferredoxin, root R-B2-like [Cucumis melo])

HSP 1 Score: 258.5 bits (659), Expect = 7.4e-66
Identity = 131/150 (87.33%), Postives = 140/150 (93.33%), Query Frame = 1


Query: 1   MSAINLPTSCLIKSATPRRSCALVQRPSSLGSFRSVSRAFGLKSSSFKVTAMATTYKVKL 60
           MS + LPTSCLIK+ T RRS ALVQRPSSL SFRSVS++FGLKSS  KV+AMA +YKVKL
Sbjct: 1   MSTVILPTSCLIKTPTLRRSNALVQRPSSLCSFRSVSQSFGLKSSQSKVSAMA-SYKVKL 60

Query: 61  IGPNGEENEFEAPDDAYILDSAEDAGLDLPYSCRAGACSTCAGQVVSGTVDQSDGSFLDD 120
           IGPNGEENEFEAPDDAYILDSAE+AGLDLPYSCRAGACSTCAGQVVSGTVDQ+DGSFLDD
Sbjct: 61  IGPNGEENEFEAPDDAYILDSAENAGLDLPYSCRAGACSTCAGQVVSGTVDQTDGSFLDD 120

Query: 121 NQMEKGYVLTCVAYPQSDCVIHTHKEGDLY 151
            QME+GYVLTCVAYPQSDCVIHTHKEGDLY
Sbjct: 121 KQMEQGYVLTCVAYPQSDCVIHTHKEGDLY 149

[Close]

BLAST of CmaCh15G005210 vs. NCBI nr
Match: gi|778702570|ref|XP_011655228.1| (PREDICTED: ferredoxin, root R-B1-like [Cucumis sativus])

HSP 1 Score: 258.1 bits (658), Expect = 9.7e-66
Identity = 131/150 (87.33%), Postives = 139/150 (92.67%), Query Frame = 1


Query: 1   MSAINLPTSCLIKSATPRRSCALVQRPSSLGSFRSVSRAFGLKSSSFKVTAMATTYKVKL 60
           MS + LPTS LIK  T RRS ALVQRPSSL SFRSVSR+FGLKSS FKV+AMA +YKVKL
Sbjct: 1   MSTVTLPTSSLIKPPTLRRSNALVQRPSSLCSFRSVSRSFGLKSSQFKVSAMA-SYKVKL 60

Query: 61  IGPNGEENEFEAPDDAYILDSAEDAGLDLPYSCRAGACSTCAGQVVSGTVDQSDGSFLDD 120
           IGP+GEENEF+APDDAYILDSAE+AGLDLPYSCRAGACSTCAGQVVSGTVDQ+DGSFLDD
Sbjct: 61  IGPDGEENEFDAPDDAYILDSAENAGLDLPYSCRAGACSTCAGQVVSGTVDQTDGSFLDD 120

Query: 121 NQMEKGYVLTCVAYPQSDCVIHTHKEGDLY 151
            QMEKGYVLTCVAYPQSDCVIHTHKEGDLY
Sbjct: 121 KQMEKGYVLTCVAYPQSDCVIHTHKEGDLY 149

[Close]

BLAST of CmaCh15G005210 vs. NCBI nr
Match: gi|641825123|gb|KDO44408.1| (hypothetical protein CISIN_1g031979mg [Citrus sinensis])

HSP 1 Score: 234.6 bits (597), Expect = 1.2e-58
Identity = 114/150 (76.00%), Postives = 132/150 (88.00%), Query Frame = 1


Query: 1   MSAINLPTSCLIKSATPRRSCALVQRPSSLGSFRSVSRAFGLKSSSFKVTAMATTYKVKL 60
           MS + LPTSCL ++A   +  +LV+ P+SLGS RSVS+AFGLK SSFK +AMA  YKVKL
Sbjct: 1   MSTVRLPTSCLFQAAPRSKKFSLVKSPASLGSTRSVSKAFGLKCSSFKASAMAV-YKVKL 60

Query: 61  IGPNGEENEFEAPDDAYILDSAEDAGLDLPYSCRAGACSTCAGQVVSGTVDQSDGSFLDD 120
           IGPNGEENEF+APDDAYI+DSAED G++LPYSCRAGACSTCAGQ+VSG+VDQSDGSFLDD
Sbjct: 61  IGPNGEENEFDAPDDAYIIDSAEDTGMELPYSCRAGACSTCAGQMVSGSVDQSDGSFLDD 120

Query: 121 NQMEKGYVLTCVAYPQSDCVIHTHKEGDLY 151
            QMEKG+VLTCVAYP SDCVI+THKE +LY
Sbjct: 121 KQMEKGFVLTCVAYPTSDCVIYTHKESELY 149

[Close]

BLAST of CmaCh15G005210 vs. NCBI nr
Match: gi|567906837|ref|XP_006445732.1| (hypothetical protein CICLE_v10016676mg [Citrus clementina])

HSP 1 Score: 234.2 bits (596), Expect = 1.5e-58
Identity = 114/150 (76.00%), Postives = 131/150 (87.33%), Query Frame = 1


Query: 1   MSAINLPTSCLIKSATPRRSCALVQRPSSLGSFRSVSRAFGLKSSSFKVTAMATTYKVKL 60
           MS + LPTSCL ++A   +  +LV+ P SLGS RSVS+AFGLK SSFK +AMA  YKVKL
Sbjct: 1   MSTVRLPTSCLFQAAPRSKKFSLVKSPGSLGSTRSVSKAFGLKCSSFKASAMAV-YKVKL 60

Query: 61  IGPNGEENEFEAPDDAYILDSAEDAGLDLPYSCRAGACSTCAGQVVSGTVDQSDGSFLDD 120
           IGPNGEENEF+APDDAYI+DSAED G++LPYSCRAGACSTCAGQ+VSG+VDQSDGSFLDD
Sbjct: 61  IGPNGEENEFDAPDDAYIIDSAEDTGMELPYSCRAGACSTCAGQMVSGSVDQSDGSFLDD 120

Query: 121 NQMEKGYVLTCVAYPQSDCVIHTHKEGDLY 151
            QMEKG+VLTCVAYP SDCVI+THKE +LY
Sbjct: 121 KQMEKGFVLTCVAYPTSDCVIYTHKESELY 149

[Close]

BLAST of CmaCh15G005210 vs. NCBI nr
Match: gi|567906835|ref|XP_006445731.1| (hypothetical protein CICLE_v10016676mg [Citrus clementina])

HSP 1 Score: 234.2 bits (596), Expect = 1.5e-58
Identity = 114/150 (76.00%), Postives = 131/150 (87.33%), Query Frame = 1


Query: 1   MSAINLPTSCLIKSATPRRSCALVQRPSSLGSFRSVSRAFGLKSSSFKVTAMATTYKVKL 60
           MS + LPTSCL ++A   +  +LV+ P SLGS RSVS+AFGLK SSFK +AMA  YKVKL
Sbjct: 65  MSTVRLPTSCLFQAAPRSKKFSLVKSPGSLGSTRSVSKAFGLKCSSFKASAMAV-YKVKL 124

Query: 61  IGPNGEENEFEAPDDAYILDSAEDAGLDLPYSCRAGACSTCAGQVVSGTVDQSDGSFLDD 120
           IGPNGEENEF+APDDAYI+DSAED G++LPYSCRAGACSTCAGQ+VSG+VDQSDGSFLDD
Sbjct: 125 IGPNGEENEFDAPDDAYIIDSAEDTGMELPYSCRAGACSTCAGQMVSGSVDQSDGSFLDD 184

Query: 121 NQMEKGYVLTCVAYPQSDCVIHTHKEGDLY 151
            QMEKG+VLTCVAYP SDCVI+THKE +LY
Sbjct: 185 KQMEKGFVLTCVAYPTSDCVIYTHKESELY 213

The following BLAST results are available for this feature:

BLAST of CmaCh15G005210 vs. Swiss-Prot


Match Name	E-value	Identity	Description
FER3_MAIZE	4.1e-48	64.71	Ferredoxin-3, chloroplastic OS=Zea mays GN=FDX3 PE=2 SV=1	[more]
FER3_ARATH	1.0e-46	63.89	Ferredoxin-3, chloroplastic OS=Arabidopsis thaliana GN=FD3 PE=1 SV=1	[more]
FER2_RAPSA	4.9e-41	76.53	Ferredoxin, root R-B2 OS=Raphanus sativus PE=1 SV=1	[more]
FER6_MAIZE	1.4e-40	62.90	Ferredoxin-6, chloroplastic OS=Zea mays GN=FDX6 PE=2 SV=1	[more]
FER1_RAPSA	1.8e-40	75.51	Ferredoxin, root R-B1 OS=Raphanus sativus PE=1 SV=1	[more]

BLAST of CmaCh15G005210 vs. TrEMBL


Match Name	E-value	Identity	Description
A0A0A0KNA3_CUCSA	6.8e-66	87.33	Uncharacterized protein OS=Cucumis sativus GN=Csa_5G413260 PE=4 SV=1	[more]
A0A067DNH4_CITSI	8.0e-59	76.00	Uncharacterized protein OS=Citrus sinensis GN=CISIN_1g031979mg PE=4 SV=1	[more]
V4TZC2_9ROSI	1.0e-58	76.00	Uncharacterized protein OS=Citrus clementina GN=CICLE_v10016676mg PE=4 SV=1	[more]
V4U9R4_9ROSI	1.0e-58	76.00	Uncharacterized protein OS=Citrus clementina GN=CICLE_v10016676mg PE=4 SV=1	[more]
B9RPT1_RICCO	3.0e-58	70.06	Ferredoxin-3, chloroplast, putative OS=Ricinus communis GN=RCOM_1539220 PE=4 SV=...	[more]

BLAST of CmaCh15G005210 vs. TAIR10


Match Name	E-value	Identity	Description
AT2G27510.1	5.7e-48	63.89	ferredoxin 3	[more]
AT1G10960.1	3.1e-38	60.42	ferredoxin 1	[more]
AT1G60950.1	1.1e-35	57.82	2Fe-2S ferredoxin-like superfamily protein	[more]
AT5G10000.1	5.2e-33	58.04	ferredoxin 4	[more]
AT4G14890.1	1.6e-18	45.92	2Fe-2S ferredoxin-like superfamily protein	[more]

BLAST of CmaCh15G005210 vs. NCBI nr


Match Name	E-value	Identity	Description
gi\|659113488\|ref\|XP_008456600.1\|	7.4e-66	87.33	PREDICTED: ferredoxin, root R-B2-like [Cucumis melo]	[more]
gi\|778702570\|ref\|XP_011655228.1\|	9.7e-66	87.33	PREDICTED: ferredoxin, root R-B1-like [Cucumis sativus]	[more]
gi\|641825123\|gb\|KDO44408.1\|	1.2e-58	76.00	hypothetical protein CISIN_1g031979mg [Citrus sinensis]	[more]
gi\|567906837\|ref\|XP_006445732.1\|	1.5e-58	76.00	hypothetical protein CICLE_v10016676mg [Citrus clementina]	[more]
gi\|567906835\|ref\|XP_006445731.1\|	1.5e-58	76.00	hypothetical protein CICLE_v10016676mg [Citrus clementina]	[more]

Annotated Terms

The following terms have been associated with this gene:

Vocabulary: **INTERPRO**
Term	Definition
IPR001041	2Fe-2S_ferredoxin-type
IPR006058	2Fe2S_fd_BS
IPR010241	Fd_pln
IPR012675	Beta-grasp_dom_sf

Vocabulary: **Molecular Function**
Term	Definition
GO:0009055	electron carrier activity
GO:0051536	iron-sulfur cluster binding
GO:0051537	2 iron, 2 sulfur cluster binding

Vocabulary: **Biological Process**
Term	Definition
GO:0022900	electron transport chain

GO Annotation

GO Assignments

This gene is annotated with the following GO terms.

Category	Term Accession	Term Name
biological_process	GO:0022900	electron transport chain
cellular_component	GO:0005575	cellular_component
cellular_component	GO:0009507	chloroplast
molecular_function	GO:0051537	2 iron, 2 sulfur cluster binding
molecular_function	GO:0009055	electron carrier activity
molecular_function	GO:0046872	metal ion binding
molecular_function	GO:0051536	iron-sulfur cluster binding

Relationships

The following mRNA feature(s) are a part of this gene:


Feature Name	Unique Name	Type
CmaCh15G005210.1	CmaCh15G005210.1	mRNA

InterPro

Analysis Name: InterPro Annotations of Cucurbita maxima
Date Performed: 2017-05-20


IPR Term	IPR Description	Source	Source Term	Source Description	Alignment
IPR001041	2Fe-2S ferredoxin-type iron-sulfur binding domain	PFAM	PF00111	Fer2	coord: 63..136 score: 2.7
IPR001041	2Fe-2S ferredoxin-type iron-sulfur binding domain	PROFILE	PS51085	2FE2S_FER_2	coord: 56..147 score: 13
IPR001041	2Fe-2S ferredoxin-type iron-sulfur binding domain	unknown	SSF54292	2Fe-2S ferredoxin-like	coord: 54..146 score: 5.11
IPR006058	2Fe-2S ferredoxin, iron-sulphur binding site	PROSITE	PS00197	2FE2S_FER_1	coord: 93..101 scor
IPR010241	Ferredoxin [2Fe-2S], plant	TIGRFAMs	TIGR02008	TIGR02008	coord: 55..150 score: 8.4
IPR012675	Beta-grasp domain	GENE3D	G3DSA:3.10.20.30		coord: 52..150 score: 6.6
None	No IPR available	PANTHER	PTHR19370	NADH-CYTOCHROME B5 REDUCTASE	coord: 1..150 score: 9.7
None	No IPR available	PANTHER	PTHR19370:SF124	FERREDOXIN-4, CHLOROPLASTIC-RELATED	coord: 1..150 score: 9.7

Synteny

The following gene(s) are orthologous to this gene:


Gene	Orthologue	Organism	Block
CmaCh15G005210	Cucsa.364660	Cucumber (Gy14) v1	cgycmaB0995
CmaCh15G005210	Cla013694	Watermelon (97103) v1	cmawmB258
CmaCh15G005210	Csa6G045160	Cucumber (Chinese Long) v2	cmacuB308
CmaCh15G005210	MELO3C019895	Melon (DHL92) v3.5.1	cmameB271
CmaCh15G005210	ClCG08G008270	Watermelon (Charleston Gray)	cmawcgB271
CmaCh15G005210	CSPI06G03960	Wild cucumber (PI 183967)	cmacpiB315
CmaCh15G005210	CmoCh04G026380	Cucurbita moschata (Rifu)	cmacmoB309
CmaCh15G005210	Lsi08G006470	Bottle gourd (USVL1VR-Ls)	cmalsiB294
CmaCh15G005210	Cp4.1LG01g25010	Cucurbita pepo (Zucchini)	cmacpeB318
CmaCh15G005210	MELO3C019895.2	Melon (DHL92) v3.6.1	cmamedB311
CmaCh15G005210	CsaV3_6G004230	Cucumber (Chinese Long) v3	cmacucB0362
CmaCh15G005210	Bhi04G001324	Wax gourd	cmawgoB0398
CmaCh15G005210	CsGy6G003930	Cucumber (Gy14) v2	cgybcmaB740
CmaCh15G005210	Carg01678	Silver-seed gourd	carcmaB1148
CmaCh15G005210	Carg04621	Silver-seed gourd	carcmaB0961

The following gene(s) are paralogous to this gene:


Gene	Paralogue	Organism	Block
CmaCh15G005210	CmaCh04G025190	Cucurbita maxima (Rimu)	cmacmaB325

The following block(s) are covering this gene:


Gene	Organism	Block
CmaCh15G005210	Watermelon (97103) v2	cmawmbB317
CmaCh15G005210	Cucurbita moschata (Rifu)	cmacmoB287
CmaCh15G005210	Cucurbita pepo (Zucchini)	cmacpeB305