CmoCh04G026380 (gene) Cucurbita moschata (Rifu)

Overview
NameCmoCh04G026380
Typegene
OrganismCucurbita moschata (Cucurbita moschata (Rifu))
DescriptionBenzoate 1,2-dioxygenase electron transfer component
LocationCmo_Chr04 : 19184227 .. 19184676 (-)
Genome Viewer
Sequences
The following sequences are available for this feature:

Gene sequence (with intron)

Legend: CDSexon
Hold the cursor over a type above to highlight its positions in the sequence below.
ATGTCGACAGTCAGACTCCCAACATCCTGCTTGATCAGAAATGCTACACCAAGGAAATCCTGTGCCCTAGTTCAGAGGCCATCTTCCTTGAGTTCCTTTAGGAGTGTATCCCGGGCATTTGGATTGAAGTCTTCCTCATTCAAAGTGTCAGCAATGGCTTCTTACAAAGTGAAGTTAATTGGACCAAATGGTGAAGAGAATGAATTCGAGGCCCCTGATGACACTTACATTCTCGACTCGGCTGAGAGTGCTGGATTGGATCTACCCTACTCTTGCAGGGCTGGGGCTTGCTCTACTTGTGCAGGTCAAGTAGTTTCCGGGACAGTTGACCAGACGGACGGATCGTTCTTGGACGACCAGCAGATGGAGAAGGGGTATGTCCTAACCTGCGTGGCATATCCACAATCCGACTGTGTCATTCACACACACAAGGAAGGTGATTTGTTCTGA

mRNA sequence

ATGTCGACAGTCAGACTCCCAACATCCTGCTTGATCAGAAATGCTACACCAAGGAAATCCTGTGCCCTAGTTCAGAGGCCATCTTCCTTGAGTTCCTTTAGGAGTGTATCCCGGGCATTTGGATTGAAGTCTTCCTCATTCAAAGTGTCAGCAATGGCTTCTTACAAAGTGAAGTTAATTGGACCAAATGGTGAAGAGAATGAATTCGAGGCCCCTGATGACACTTACATTCTCGACTCGGCTGAGAGTGCTGGATTGGATCTACCCTACTCTTGCAGGGCTGGGGCTTGCTCTACTTGTGCAGGTCAAGTAGTTTCCGGGACAGTTGACCAGACGGACGGATCGTTCTTGGACGACCAGCAGATGGAGAAGGGGTATGTCCTAACCTGCGTGGCATATCCACAATCCGACTGTGTCATTCACACACACAAGGAAGGTGATTTGTTCTGA

Coding sequence (CDS)

ATGTCGACAGTCAGACTCCCAACATCCTGCTTGATCAGAAATGCTACACCAAGGAAATCCTGTGCCCTAGTTCAGAGGCCATCTTCCTTGAGTTCCTTTAGGAGTGTATCCCGGGCATTTGGATTGAAGTCTTCCTCATTCAAAGTGTCAGCAATGGCTTCTTACAAAGTGAAGTTAATTGGACCAAATGGTGAAGAGAATGAATTCGAGGCCCCTGATGACACTTACATTCTCGACTCGGCTGAGAGTGCTGGATTGGATCTACCCTACTCTTGCAGGGCTGGGGCTTGCTCTACTTGTGCAGGTCAAGTAGTTTCCGGGACAGTTGACCAGACGGACGGATCGTTCTTGGACGACCAGCAGATGGAGAAGGGGTATGTCCTAACCTGCGTGGCATATCCACAATCCGACTGTGTCATTCACACACACAAGGAAGGTGATTTGTTCTGA
Homology
[Close]
BLAST of CmoCh04G026380 vs. Swiss-Prot
Match: FER3_MAIZE (Ferredoxin-3, chloroplastic OS=Zea mays GN=FDX3 PE=2 SV=1)

HSP 1 Score: 195.3 bits (495), Expect = 4.8e-49
Identity = 101/152 (66.45%), Postives = 122/152 (80.26%), Query Frame = 1 

Query: 1   MSTVRLPTSC-LIRNA-TPRKSCALVQRPSSLSSFRSVSRAFGLKSSS-FKVSAMASYKV 60
           MST    TSC L+ N  T + S   V+ PSSLS F  V++   LK+S    VSAMA YKV
Sbjct: 1   MSTSTFATSCTLLGNVRTTQASQTAVKSPSSLSFFSQVTKVPSLKTSKKLDVSAMAVYKV 60

Query: 61  KLIGPNGEENEFEAPDDTYILDSAESAGLDLPYSCRAGACSTCAGQVVSGTVDQTDGSFL 120
           KL+GP GEE+EF+APDD YILD+AE+AG++LPYSCRAGACSTCAG++ SG+VDQ+DGSFL
Sbjct: 61  KLVGPEGEEHEFDAPDDAYILDAAETAGVELPYSCRAGACSTCAGKIESGSVDQSDGSFL 120

Query: 121 DDQQMEKGYVLTCVAYPQSDCVIHTHKEGDLF 150
           DD Q E+GYVLTCV+YP+SDCVIHTHKEGDL+
Sbjct: 121 DDGQQEEGYVLTCVSYPKSDCVIHTHKEGDLY 152

[Close]
BLAST of CmoCh04G026380 vs. Swiss-Prot
Match: FER3_ARATH (Ferredoxin-3, chloroplastic OS=Arabidopsis thaliana GN=FD3 PE=1 SV=1)

HSP 1 Score: 184.9 bits (468), Expect = 6.5e-46
Identity = 96/155 (61.94%), Postives = 116/155 (74.84%), Query Frame = 1 

Query: 1   MSTVRLP----TSCLIRNATPRKSCALVQRPSSLSSFRSVSRAFGLKSSSFKVSAMAS-- 60
           M+TVR+     T  ++R+ T  K         S+ S + VSR+FGLK S+    A  S  
Sbjct: 1   MATVRISSTSMTKAVLRSQTTNKLITNKSYNLSVGSTKRVSRSFGLKCSANSGGATMSAV 60

Query: 61  YKVKLIGPNGEENEFEAPDDTYILDSAESAGLDLPYSCRAGACSTCAGQVVSGTVDQTDG 120
           YKVKL+GP+G+E+EFE  DD YILD+AE AG+DLPYSCRAGACSTCAGQ+VSG VDQ+DG
Sbjct: 61  YKVKLLGPDGQEDEFEVQDDQYILDAAEEAGVDLPYSCRAGACSTCAGQIVSGNVDQSDG 120

Query: 121 SFLDDQQMEKGYVLTCVAYPQSDCVIHTHKEGDLF 150
           SFL+D  +EKGYVLTCVAYPQSDCVIHTHKE +LF
Sbjct: 121 SFLEDSHLEKGYVLTCVAYPQSDCVIHTHKETELF 155

[Close]
BLAST of CmoCh04G026380 vs. Swiss-Prot
Match: FER2_RAPSA (Ferredoxin, root R-B2 OS=Raphanus sativus PE=1 SV=1)

HSP 1 Score: 167.9 bits (424), Expect = 8.2e-41
Identity = 76/97 (78.35%), Postives = 85/97 (87.63%), Query Frame = 1 

Query: 53  ASYKVKLIGPNGEENEFEAPDDTYILDSAESAGLDLPYSCRAGACSTCAGQVVSGTVDQT 112
           A YKVKLIGP GEENEFE  DD +ILD+AE AG+DLPYSCRAGACSTCAGQ+V G VDQ+
Sbjct: 2   AVYKVKLIGPEGEENEFEVQDDQFILDAAEEAGVDLPYSCRAGACSTCAGQIVKGQVDQS 61

Query: 113 DGSFLDDQQMEKGYVLTCVAYPQSDCVIHTHKEGDLF 150
           +GSFL+D   EKG+VLTCVAYPQSDCVIHTHKE +LF
Sbjct: 62  EGSFLEDDHFEKGFVLTCVAYPQSDCVIHTHKETELF 98

[Close]
BLAST of CmoCh04G026380 vs. Swiss-Prot
Match: FER1_RAPSA (Ferredoxin, root R-B1 OS=Raphanus sativus PE=1 SV=1)

HSP 1 Score: 166.0 bits (419), Expect = 3.1e-40
Identity = 75/97 (77.32%), Postives = 85/97 (87.63%), Query Frame = 1 

Query: 53  ASYKVKLIGPNGEENEFEAPDDTYILDSAESAGLDLPYSCRAGACSTCAGQVVSGTVDQT 112
           A YKVKLIGP+G+ENEF+ PDD YILD+AE AG+DLPYSCRAGACSTCAG++  G VDQ+
Sbjct: 2   AVYKVKLIGPDGQENEFDVPDDQYILDAAEEAGVDLPYSCRAGACSTCAGKIEKGQVDQS 61

Query: 113 DGSFLDDQQMEKGYVLTCVAYPQSDCVIHTHKEGDLF 150
           DGSFL+D   EKGYVLTCVAYPQSD VIHTHKE +LF
Sbjct: 62  DGSFLEDHHFEKGYVLTCVAYPQSDLVIHTHKEEELF 98

[Close]
BLAST of CmoCh04G026380 vs. Swiss-Prot
Match: FER6_MAIZE (Ferredoxin-6, chloroplastic OS=Zea mays GN=FDX6 PE=2 SV=1)

HSP 1 Score: 161.4 bits (407), Expect = 7.7e-39
Identity = 74/118 (62.71%), Postives = 102/118 (86.44%), Query Frame = 1 

Query: 34  RSVSRAFGLKSSSFKVSAMAS--YKVKLIGPNGEENEFEAPDDTYILDSAESAGLDLPYS 93
           R  +RA G + SS  V++ A+  +KVKL+GP+G E+EFEAPDDTYIL++AE+AG++LP+S
Sbjct: 38  RQAARASGPRLSSRFVASAAAVLHKVKLVGPDGTEHEFEAPDDTYILEAAETAGVELPFS 97

Query: 94  CRAGACSTCAGQVVSGTVDQTDGSFLDDQQMEKGYVLTCVAYPQSDCVIHTHKEGDLF 150
           CRAG+CSTCAG++ +G VDQ++GSFLDD QM +GY+LTC++YP++DCVIHTHKE DL+
Sbjct: 98  CRAGSCSTCAGRMSAGEVDQSEGSFLDDGQMAEGYLLTCISYPKADCVIHTHKEEDLY 155

[Close]
BLAST of CmoCh04G026380 vs. TrEMBL
Match: A0A0A0KNA3_CUCSA (Uncharacterized protein OS=Cucumis sativus GN=Csa_5G413260 PE=4 SV=1)

HSP 1 Score: 262.7 bits (670), Expect = 2.7e-67
Identity = 132/149 (88.59%), Postives = 140/149 (93.96%), Query Frame = 1 

Query: 1   MSTVRLPTSCLIRNATPRKSCALVQRPSSLSSFRSVSRAFGLKSSSFKVSAMASYKVKLI 60
           MSTV LPTS LI+  T R+S ALVQRPSSL SFRSVSR+FGLKSS FKVSAMASYKVKLI
Sbjct: 1   MSTVTLPTSSLIKPPTLRRSNALVQRPSSLCSFRSVSRSFGLKSSQFKVSAMASYKVKLI 60

Query: 61  GPNGEENEFEAPDDTYILDSAESAGLDLPYSCRAGACSTCAGQVVSGTVDQTDGSFLDDQ 120
           GP+GEENEF+APDD YILDSAE+AGLDLPYSCRAGACSTCAGQVVSGTVDQTDGSFLDD+
Sbjct: 61  GPDGEENEFDAPDDAYILDSAENAGLDLPYSCRAGACSTCAGQVVSGTVDQTDGSFLDDK 120

Query: 121 QMEKGYVLTCVAYPQSDCVIHTHKEGDLF 150
           QMEKGYVLTCVAYPQSDCVIHTHKEGDL+
Sbjct: 121 QMEKGYVLTCVAYPQSDCVIHTHKEGDLY 149

[Close]
BLAST of CmoCh04G026380 vs. TrEMBL
Match: B9HKP7_POPTR (Ferredoxin I family protein OS=Populus trichocarpa GN=POPTR_0008s02100g PE=4 SV=2)

HSP 1 Score: 235.3 bits (599), Expect = 4.7e-59
Identity = 116/155 (74.84%), Postives = 137/155 (88.39%), Query Frame = 1 

Query: 1   MSTVRLPTSCLIRNATPRK------SCALVQRPSSLSSFRSVSRAFGLKSSSFKVSAMAS 60
           MSTVRLPT+C+IR+A PRK      SCAL++ P +L S R+VS+AFGLKSSSFKVSAMA 
Sbjct: 1   MSTVRLPTTCMIRSAPPRKVASPSKSCALIKSPGALGSVRNVSKAFGLKSSSFKVSAMAV 60

Query: 61  YKVKLIGPNGEENEFEAPDDTYILDSAESAGLDLPYSCRAGACSTCAGQVVSGTVDQTDG 120
           YKVKLI P+G E+EF+AP DTYILDSAE+AG++LPYSCRAGACSTCAG +VSG+VDQ+DG
Sbjct: 61  YKVKLIAPDGCEHEFDAPGDTYILDSAENAGVELPYSCRAGACSTCAGMLVSGSVDQSDG 120

Query: 121 SFLDDQQMEKGYVLTCVAYPQSDCVIHTHKEGDLF 150
           SFLD++QMEKGYVLTCV+YP SDCVIHTHKE DL+
Sbjct: 121 SFLDEKQMEKGYVLTCVSYPTSDCVIHTHKEEDLY 155

[Close]
BLAST of CmoCh04G026380 vs. TrEMBL
Match: A0A067DNH4_CITSI (Uncharacterized protein OS=Citrus sinensis GN=CISIN_1g031979mg PE=4 SV=1)

HSP 1 Score: 234.2 bits (596), Expect = 1.0e-58
Identity = 114/149 (76.51%), Postives = 131/149 (87.92%), Query Frame = 1 

Query: 1   MSTVRLPTSCLIRNATPRKSCALVQRPSSLSSFRSVSRAFGLKSSSFKVSAMASYKVKLI 60
           MSTVRLPTSCL + A   K  +LV+ P+SL S RSVS+AFGLK SSFK SAMA YKVKLI
Sbjct: 1   MSTVRLPTSCLFQAAPRSKKFSLVKSPASLGSTRSVSKAFGLKCSSFKASAMAVYKVKLI 60

Query: 61  GPNGEENEFEAPDDTYILDSAESAGLDLPYSCRAGACSTCAGQVVSGTVDQTDGSFLDDQ 120
           GPNGEENEF+APDD YI+DSAE  G++LPYSCRAGACSTCAGQ+VSG+VDQ+DGSFLDD+
Sbjct: 61  GPNGEENEFDAPDDAYIIDSAEDTGMELPYSCRAGACSTCAGQMVSGSVDQSDGSFLDDK 120

Query: 121 QMEKGYVLTCVAYPQSDCVIHTHKEGDLF 150
           QMEKG+VLTCVAYP SDCVI+THKE +L+
Sbjct: 121 QMEKGFVLTCVAYPTSDCVIYTHKESELY 149

[Close]
BLAST of CmoCh04G026380 vs. TrEMBL
Match: V4TZC2_9ROSI (Uncharacterized protein OS=Citrus clementina GN=CICLE_v10016676mg PE=4 SV=1)

HSP 1 Score: 233.8 bits (595), Expect = 1.4e-58
Identity = 114/149 (76.51%), Postives = 130/149 (87.25%), Query Frame = 1 

Query: 1   MSTVRLPTSCLIRNATPRKSCALVQRPSSLSSFRSVSRAFGLKSSSFKVSAMASYKVKLI 60
           MSTVRLPTSCL + A   K  +LV+ P SL S RSVS+AFGLK SSFK SAMA YKVKLI
Sbjct: 1   MSTVRLPTSCLFQAAPRSKKFSLVKSPGSLGSTRSVSKAFGLKCSSFKASAMAVYKVKLI 60

Query: 61  GPNGEENEFEAPDDTYILDSAESAGLDLPYSCRAGACSTCAGQVVSGTVDQTDGSFLDDQ 120
           GPNGEENEF+APDD YI+DSAE  G++LPYSCRAGACSTCAGQ+VSG+VDQ+DGSFLDD+
Sbjct: 61  GPNGEENEFDAPDDAYIIDSAEDTGMELPYSCRAGACSTCAGQMVSGSVDQSDGSFLDDK 120

Query: 121 QMEKGYVLTCVAYPQSDCVIHTHKEGDLF 150
           QMEKG+VLTCVAYP SDCVI+THKE +L+
Sbjct: 121 QMEKGFVLTCVAYPTSDCVIYTHKESELY 149

[Close]
BLAST of CmoCh04G026380 vs. TrEMBL
Match: V4U9R4_9ROSI (Uncharacterized protein OS=Citrus clementina GN=CICLE_v10016676mg PE=4 SV=1)

HSP 1 Score: 233.8 bits (595), Expect = 1.4e-58
Identity = 114/149 (76.51%), Postives = 130/149 (87.25%), Query Frame = 1 

Query: 1   MSTVRLPTSCLIRNATPRKSCALVQRPSSLSSFRSVSRAFGLKSSSFKVSAMASYKVKLI 60
           MSTVRLPTSCL + A   K  +LV+ P SL S RSVS+AFGLK SSFK SAMA YKVKLI
Sbjct: 65  MSTVRLPTSCLFQAAPRSKKFSLVKSPGSLGSTRSVSKAFGLKCSSFKASAMAVYKVKLI 124

Query: 61  GPNGEENEFEAPDDTYILDSAESAGLDLPYSCRAGACSTCAGQVVSGTVDQTDGSFLDDQ 120
           GPNGEENEF+APDD YI+DSAE  G++LPYSCRAGACSTCAGQ+VSG+VDQ+DGSFLDD+
Sbjct: 125 GPNGEENEFDAPDDAYIIDSAEDTGMELPYSCRAGACSTCAGQMVSGSVDQSDGSFLDDK 184

Query: 121 QMEKGYVLTCVAYPQSDCVIHTHKEGDLF 150
           QMEKG+VLTCVAYP SDCVI+THKE +L+
Sbjct: 185 QMEKGFVLTCVAYPTSDCVIYTHKESELY 213

[Close]
BLAST of CmoCh04G026380 vs. TAIR10
Match: AT2G27510.1 (AT2G27510.1 ferredoxin 3)

HSP 1 Score: 184.9 bits (468), Expect = 3.7e-47
Identity = 96/155 (61.94%), Postives = 116/155 (74.84%), Query Frame = 1 

Query: 1   MSTVRLP----TSCLIRNATPRKSCALVQRPSSLSSFRSVSRAFGLKSSSFKVSAMAS-- 60
           M+TVR+     T  ++R+ T  K         S+ S + VSR+FGLK S+    A  S  
Sbjct: 1   MATVRISSTSMTKAVLRSQTTNKLITNKSYNLSVGSTKRVSRSFGLKCSANSGGATMSAV 60

Query: 61  YKVKLIGPNGEENEFEAPDDTYILDSAESAGLDLPYSCRAGACSTCAGQVVSGTVDQTDG 120
           YKVKL+GP+G+E+EFE  DD YILD+AE AG+DLPYSCRAGACSTCAGQ+VSG VDQ+DG
Sbjct: 61  YKVKLLGPDGQEDEFEVQDDQYILDAAEEAGVDLPYSCRAGACSTCAGQIVSGNVDQSDG 120

Query: 121 SFLDDQQMEKGYVLTCVAYPQSDCVIHTHKEGDLF 150
           SFL+D  +EKGYVLTCVAYPQSDCVIHTHKE +LF
Sbjct: 121 SFLEDSHLEKGYVLTCVAYPQSDCVIHTHKETELF 155

[Close]
BLAST of CmoCh04G026380 vs. TAIR10
Match: AT1G10960.1 (AT1G10960.1 ferredoxin 1)

HSP 1 Score: 154.8 bits (390), Expect = 4.1e-38
Identity = 81/126 (64.29%), Postives = 98/126 (77.78%), Query Frame = 1 

Query: 25  QRPSSLSS--FRSVSRAFGLKSSSFK---VSAMASYKVKLIGPNGEENEFEAPDDTYILD 84
           Q P SL S  F +    FGLKSS+ +   V+AMA+YKVK I P GE+ E E  +D Y+LD
Sbjct: 20  QTPISLRSLPFANTQSLFGLKSSTARGGRVTAMATYKVKFITPEGEQ-EVECEEDVYVLD 79

Query: 85  SAESAGLDLPYSCRAGACSTCAGQVVSGTVDQTDGSFLDDQQMEKGYVLTCVAYPQSDCV 144
           +AE AGLDLPYSCRAG+CS+CAG+VVSG++DQ+D SFLDD+QM +GYVLTCVAYP SD V
Sbjct: 80  AAEEAGLDLPYSCRAGSCSSCAGKVVSGSIDQSDQSFLDDEQMSEGYVLTCVAYPTSDVV 139

Query: 145 IHTHKE 146
           I THKE
Sbjct: 140 IETHKE 144

[Close]
BLAST of CmoCh04G026380 vs. TAIR10
Match: AT1G60950.1 (AT1G60950.1 2Fe-2S ferredoxin-like superfamily protein)

HSP 1 Score: 145.2 bits (365), Expect = 3.2e-35
Identity = 81/146 (55.48%), Postives = 104/146 (71.23%), Query Frame = 1 

Query: 8   TSCLIRNATPRKSCALVQRPSSLSSFRSVSRA--FGLKSSSFK---VSAMASYKVKLIGP 67
           +S ++  +  R+S A    P SL S  S +    FGLKS + +   V+AMA+YKVK I P
Sbjct: 7   SSAIVGTSFIRRSPA----PISLRSLPSANTQSLFGLKSGTARGGRVTAMATYKVKFITP 66

Query: 68  NGEENEFEAPDDTYILDSAESAGLDLPYSCRAGACSTCAGQVVSGTVDQTDGSFLDDQQM 127
            G E E E  DD Y+LD+AE AG+DLPYSCRAG+CS+CAG+VVSG+VDQ+D SFLDD+Q+
Sbjct: 67  EG-ELEVECDDDVYVLDAAEEAGIDLPYSCRAGSCSSCAGKVVSGSVDQSDQSFLDDEQI 126

Query: 128 EKGYVLTCVAYPQSDCVIHTHKEGDL 149
            +G+VLTC AYP SD  I THKE D+
Sbjct: 127 GEGFVLTCAAYPTSDVTIETHKEEDI 147

[Close]
BLAST of CmoCh04G026380 vs. TAIR10
Match: AT5G10000.1 (AT5G10000.1 ferredoxin 4)

HSP 1 Score: 140.2 bits (352), Expect = 1.0e-33
Identity = 67/112 (59.82%), Postives = 85/112 (75.89%), Query Frame = 1 

Query: 40  FGLKSSSF---KVSAMASYKVKLIGPNGEENEFEAPDDTYILDSAESAGLDLPYSCRAGA 99
           FGL SS     KV A  S KVKLI P GEE E E  +D  IL+SAE+AGL+LPYSCR+G 
Sbjct: 36  FGLSSSRGNFGKVFAKESRKVKLISPEGEEQEIEGNEDCCILESAENAGLELPYSCRSGT 95

Query: 100 CSTCAGQVVSGTVDQTDGSFLDDQQMEKGYVLTCVAYPQSDCVIHTHKEGDL 149
           C TC G++VSG VDQ+ GSFL+++Q++KGY+LTC+A P  DCV++THK+ DL
Sbjct: 96  CGTCCGKLVSGKVDQSLGSFLEEEQIQKGYILTCIALPLEDCVVYTHKQSDL 147

[Close]
BLAST of CmoCh04G026380 vs. TAIR10
Match: AT4G14890.1 (AT4G14890.1 2Fe-2S ferredoxin-like superfamily protein)

HSP 1 Score: 82.0 bits (201), Expect = 3.3e-16
Identity = 56/154 (36.36%), Postives = 78/154 (50.65%), Query Frame = 1 

Query: 2   STVRLPTSCL-------IRNATPRKSCALVQRPSSLSSFRSVSRAFGLKSSSFKVSAMAS 61
           ST+ LP   L       +RNAT   +     R + L++ R ++RA               
Sbjct: 11  STISLPKPYLSNSFSFPLRNATLSTT---TNRRNFLTTGRIIARA--------------- 70

Query: 62  YKVKLIGPNGEENEFEAPDDTYILDSAESAGLDLPYSCRAGACSTCAGQVVSGTVDQTDG 121
           YKV ++  +G+  E E   D  IL  A  +GLD+PY C  G C TC  ++V+GTVDQ+ G
Sbjct: 71  YKV-VVEHDGKTTELEVEPDETILSKALDSGLDVPYDCNLGVCMTCPAKLVTGTVDQS-G 130

Query: 122 SFLDDQQMEKGYVLTCVAYPQSDCVIHTHKEGDL 149
             L D  +E+GY L C +YP SDC I    E +L
Sbjct: 131 GMLSDDVVERGYTLLCASYPTSDCHIKMIPEEEL 144

[Close]
BLAST of CmoCh04G026380 vs. NCBI nr
Match: gi|659113488|ref|XP_008456600.1| (PREDICTED: ferredoxin, root R-B2-like [Cucumis melo])

HSP 1 Score: 263.5 bits (672), Expect = 2.3e-67
Identity = 132/149 (88.59%), Postives = 140/149 (93.96%), Query Frame = 1 

Query: 1   MSTVRLPTSCLIRNATPRKSCALVQRPSSLSSFRSVSRAFGLKSSSFKVSAMASYKVKLI 60
           MSTV LPTSCLI+  T R+S ALVQRPSSL SFRSVS++FGLKSS  KVSAMASYKVKLI
Sbjct: 1   MSTVILPTSCLIKTPTLRRSNALVQRPSSLCSFRSVSQSFGLKSSQSKVSAMASYKVKLI 60

Query: 61  GPNGEENEFEAPDDTYILDSAESAGLDLPYSCRAGACSTCAGQVVSGTVDQTDGSFLDDQ 120
           GPNGEENEFEAPDD YILDSAE+AGLDLPYSCRAGACSTCAGQVVSGTVDQTDGSFLDD+
Sbjct: 61  GPNGEENEFEAPDDAYILDSAENAGLDLPYSCRAGACSTCAGQVVSGTVDQTDGSFLDDK 120

Query: 121 QMEKGYVLTCVAYPQSDCVIHTHKEGDLF 150
           QME+GYVLTCVAYPQSDCVIHTHKEGDL+
Sbjct: 121 QMEQGYVLTCVAYPQSDCVIHTHKEGDLY 149

[Close]
BLAST of CmoCh04G026380 vs. NCBI nr
Match: gi|778702570|ref|XP_011655228.1| (PREDICTED: ferredoxin, root R-B1-like [Cucumis sativus])

HSP 1 Score: 262.7 bits (670), Expect = 3.9e-67
Identity = 132/149 (88.59%), Postives = 140/149 (93.96%), Query Frame = 1 

Query: 1   MSTVRLPTSCLIRNATPRKSCALVQRPSSLSSFRSVSRAFGLKSSSFKVSAMASYKVKLI 60
           MSTV LPTS LI+  T R+S ALVQRPSSL SFRSVSR+FGLKSS FKVSAMASYKVKLI
Sbjct: 1   MSTVTLPTSSLIKPPTLRRSNALVQRPSSLCSFRSVSRSFGLKSSQFKVSAMASYKVKLI 60

Query: 61  GPNGEENEFEAPDDTYILDSAESAGLDLPYSCRAGACSTCAGQVVSGTVDQTDGSFLDDQ 120
           GP+GEENEF+APDD YILDSAE+AGLDLPYSCRAGACSTCAGQVVSGTVDQTDGSFLDD+
Sbjct: 61  GPDGEENEFDAPDDAYILDSAENAGLDLPYSCRAGACSTCAGQVVSGTVDQTDGSFLDDK 120

Query: 121 QMEKGYVLTCVAYPQSDCVIHTHKEGDLF 150
           QMEKGYVLTCVAYPQSDCVIHTHKEGDL+
Sbjct: 121 QMEKGYVLTCVAYPQSDCVIHTHKEGDLY 149

[Close]
BLAST of CmoCh04G026380 vs. NCBI nr
Match: gi|743867949|ref|XP_011032872.1| (PREDICTED: ferredoxin, root R-B1-like [Populus euphratica])

HSP 1 Score: 235.3 bits (599), Expect = 6.7e-59
Identity = 116/155 (74.84%), Postives = 137/155 (88.39%), Query Frame = 1 

Query: 1   MSTVRLPTSCLIRNATPRK------SCALVQRPSSLSSFRSVSRAFGLKSSSFKVSAMAS 60
           MSTVRLPT+C+IR+A PRK      SCAL++ P +L S R+VS+AFGLKSSSFKVSAMA 
Sbjct: 1   MSTVRLPTTCMIRSAPPRKVPSPSKSCALIKSPGALGSVRNVSKAFGLKSSSFKVSAMAV 60

Query: 61  YKVKLIGPNGEENEFEAPDDTYILDSAESAGLDLPYSCRAGACSTCAGQVVSGTVDQTDG 120
           YKVKLI P+G E+EF+AP DTYILDSAE+AG++LPYSCRAGACSTCAG +VSG+VDQ+DG
Sbjct: 61  YKVKLIAPDGCEHEFDAPGDTYILDSAENAGVELPYSCRAGACSTCAGMMVSGSVDQSDG 120

Query: 121 SFLDDQQMEKGYVLTCVAYPQSDCVIHTHKEGDLF 150
           SFLD++QMEKGYVLTCV+YP SDCVIHTHKE DL+
Sbjct: 121 SFLDEKQMEKGYVLTCVSYPTSDCVIHTHKEEDLY 155

[Close]
BLAST of CmoCh04G026380 vs. NCBI nr
Match: gi|566181867|ref|XP_002311943.2| (ferredoxin I family protein [Populus trichocarpa])

HSP 1 Score: 235.3 bits (599), Expect = 6.7e-59
Identity = 116/155 (74.84%), Postives = 137/155 (88.39%), Query Frame = 1 

Query: 1   MSTVRLPTSCLIRNATPRK------SCALVQRPSSLSSFRSVSRAFGLKSSSFKVSAMAS 60
           MSTVRLPT+C+IR+A PRK      SCAL++ P +L S R+VS+AFGLKSSSFKVSAMA 
Sbjct: 1   MSTVRLPTTCMIRSAPPRKVASPSKSCALIKSPGALGSVRNVSKAFGLKSSSFKVSAMAV 60

Query: 61  YKVKLIGPNGEENEFEAPDDTYILDSAESAGLDLPYSCRAGACSTCAGQVVSGTVDQTDG 120
           YKVKLI P+G E+EF+AP DTYILDSAE+AG++LPYSCRAGACSTCAG +VSG+VDQ+DG
Sbjct: 61  YKVKLIAPDGCEHEFDAPGDTYILDSAENAGVELPYSCRAGACSTCAGMLVSGSVDQSDG 120

Query: 121 SFLDDQQMEKGYVLTCVAYPQSDCVIHTHKEGDLF 150
           SFLD++QMEKGYVLTCV+YP SDCVIHTHKE DL+
Sbjct: 121 SFLDEKQMEKGYVLTCVSYPTSDCVIHTHKEEDLY 155

[Close]
BLAST of CmoCh04G026380 vs. NCBI nr
Match: gi|641825123|gb|KDO44408.1| (hypothetical protein CISIN_1g031979mg [Citrus sinensis])

HSP 1 Score: 234.2 bits (596), Expect = 1.5e-58
Identity = 114/149 (76.51%), Postives = 131/149 (87.92%), Query Frame = 1 

Query: 1   MSTVRLPTSCLIRNATPRKSCALVQRPSSLSSFRSVSRAFGLKSSSFKVSAMASYKVKLI 60
           MSTVRLPTSCL + A   K  +LV+ P+SL S RSVS+AFGLK SSFK SAMA YKVKLI
Sbjct: 1   MSTVRLPTSCLFQAAPRSKKFSLVKSPASLGSTRSVSKAFGLKCSSFKASAMAVYKVKLI 60

Query: 61  GPNGEENEFEAPDDTYILDSAESAGLDLPYSCRAGACSTCAGQVVSGTVDQTDGSFLDDQ 120
           GPNGEENEF+APDD YI+DSAE  G++LPYSCRAGACSTCAGQ+VSG+VDQ+DGSFLDD+
Sbjct: 61  GPNGEENEFDAPDDAYIIDSAEDTGMELPYSCRAGACSTCAGQMVSGSVDQSDGSFLDDK 120

Query: 121 QMEKGYVLTCVAYPQSDCVIHTHKEGDLF 150
           QMEKG+VLTCVAYP SDCVI+THKE +L+
Sbjct: 121 QMEKGFVLTCVAYPTSDCVIYTHKESELY 149

The following BLAST results are available for this feature:
BLAST of CmoCh04G026380 vs. Swiss-Prot
Match NameE-valueIdentityDescription
FER3_MAIZE4.8e-4966.45Ferredoxin-3, chloroplastic OS=Zea mays GN=FDX3 PE=2 SV=1[more]
FER3_ARATH6.5e-4661.94Ferredoxin-3, chloroplastic OS=Arabidopsis thaliana GN=FD3 PE=1 SV=1[more]
FER2_RAPSA8.2e-4178.35Ferredoxin, root R-B2 OS=Raphanus sativus PE=1 SV=1[more]
FER1_RAPSA3.1e-4077.32Ferredoxin, root R-B1 OS=Raphanus sativus PE=1 SV=1[more]
FER6_MAIZE7.7e-3962.71Ferredoxin-6, chloroplastic OS=Zea mays GN=FDX6 PE=2 SV=1[more]
BLAST of CmoCh04G026380 vs. TrEMBL
Match NameE-valueIdentityDescription
A0A0A0KNA3_CUCSA2.7e-6788.59Uncharacterized protein OS=Cucumis sativus GN=Csa_5G413260 PE=4 SV=1[more]
B9HKP7_POPTR4.7e-5974.84Ferredoxin I family protein OS=Populus trichocarpa GN=POPTR_0008s02100g PE=4 SV=... [more]
A0A067DNH4_CITSI1.0e-5876.51Uncharacterized protein OS=Citrus sinensis GN=CISIN_1g031979mg PE=4 SV=1[more]
V4TZC2_9ROSI1.4e-5876.51Uncharacterized protein OS=Citrus clementina GN=CICLE_v10016676mg PE=4 SV=1[more]
V4U9R4_9ROSI1.4e-5876.51Uncharacterized protein OS=Citrus clementina GN=CICLE_v10016676mg PE=4 SV=1[more]
BLAST of CmoCh04G026380 vs. TAIR10
Match NameE-valueIdentityDescription
AT2G27510.13.7e-4761.94 ferredoxin 3[more]
AT1G10960.14.1e-3864.29 ferredoxin 1[more]
AT1G60950.13.2e-3555.48 2Fe-2S ferredoxin-like superfamily protein[more]
AT5G10000.11.0e-3359.82 ferredoxin 4[more]
AT4G14890.13.3e-1636.36 2Fe-2S ferredoxin-like superfamily protein[more]
BLAST of CmoCh04G026380 vs. NCBI nr
Match NameE-valueIdentityDescription
gi|659113488|ref|XP_008456600.1|2.3e-6788.59PREDICTED: ferredoxin, root R-B2-like [Cucumis melo][more]
gi|778702570|ref|XP_011655228.1|3.9e-6788.59PREDICTED: ferredoxin, root R-B1-like [Cucumis sativus][more]
gi|743867949|ref|XP_011032872.1|6.7e-5974.84PREDICTED: ferredoxin, root R-B1-like [Populus euphratica][more]
gi|566181867|ref|XP_002311943.2|6.7e-5974.84ferredoxin I family protein [Populus trichocarpa][more]
gi|641825123|gb|KDO44408.1|1.5e-5876.51hypothetical protein CISIN_1g031979mg [Citrus sinensis][more]
Annotated Terms
The following terms have been associated with this gene:
Vocabulary: INTERPRO
TermDefinition
IPR0010412Fe-2S_ferredoxin-type
IPR0060582Fe2S_fd_BS
IPR010241Fd_pln
IPR012675Beta-grasp_dom_sf
Vocabulary: Molecular Function
TermDefinition
GO:0009055electron carrier activity
GO:0051536iron-sulfur cluster binding
GO:00515372 iron, 2 sulfur cluster binding
Vocabulary: Biological Process
TermDefinition
GO:0022900electron transport chain
GO Annotation
GO Assignments
This gene is annotated with the following GO terms.
Category Term Accession Term Name
biological_process GO:0006470 protein dephosphorylation
biological_process GO:0022900 electron transport chain
cellular_component GO:0005575 cellular_component
cellular_component GO:0009507 chloroplast
molecular_function GO:0051537 2 iron, 2 sulfur cluster binding
molecular_function GO:0009055 electron carrier activity
molecular_function GO:0046872 metal ion binding
molecular_function GO:0051536 iron-sulfur cluster binding
molecular_function GO:0008138 protein tyrosine/serine/threonine phosphatase activity
Relationships

The following mRNA feature(s) are a part of this gene:

Feature NameUnique NameType
CmoCh04G026380.1CmoCh04G026380.1mRNA


InterPro
Analysis Name: InterPro Annotations of Cucurbita moschata
Date Performed: 2017-05-19
IPR TermIPR DescriptionSourceSource TermSource DescriptionAlignment
IPR0010412Fe-2S ferredoxin-type iron-sulfur binding domainPFAMPF00111Fer2coord: 62..135
score: 4.0
IPR0010412Fe-2S ferredoxin-type iron-sulfur binding domainPROFILEPS510852FE2S_FER_2coord: 55..146
score: 12
IPR0010412Fe-2S ferredoxin-type iron-sulfur binding domainunknownSSF542922Fe-2S ferredoxin-likecoord: 38..145
score: 6.55
IPR0060582Fe-2S ferredoxin, iron-sulphur binding sitePROSITEPS001972FE2S_FER_1coord: 92..100
scor
IPR010241Ferredoxin [2Fe-2S], plantTIGRFAMsTIGR02008TIGR02008coord: 53..149
score: 7.8
IPR012675Beta-grasp domainGENE3DG3DSA:3.10.20.30coord: 52..148
score: 9.9
NoneNo IPR availablePANTHERPTHR19370NADH-CYTOCHROME B5 REDUCTASEcoord: 1..149
score: 1.3
NoneNo IPR availablePANTHERPTHR19370:SF124FERREDOXIN-4, CHLOROPLASTIC-RELATEDcoord: 1..149
score: 1.3

Synteny
The following gene(s) are orthologous to this gene:
GeneOrthologueOrganismBlock
CmoCh04G026380Cucsa.364660Cucumber (Gy14) v1cgycmoB1004
CmoCh04G026380CmaCh15G005210Cucurbita maxima (Rimu)cmacmoB309
CmoCh04G026380CmaCh04G025190Cucurbita maxima (Rimu)cmacmoB729
CmoCh04G026380Cla013694Watermelon (97103) v1cmowmB663
CmoCh04G026380Csa6G045160Cucumber (Chinese Long) v2cmocuB760
CmoCh04G026380MELO3C019895Melon (DHL92) v3.5.1cmomeB667
CmoCh04G026380ClCG08G008270Watermelon (Charleston Gray)cmowcgB682
CmoCh04G026380CSPI06G03960Wild cucumber (PI 183967)cmocpiB769
CmoCh04G026380Lsi08G006470Bottle gourd (USVL1VR-Ls)cmolsiB697
CmoCh04G026380Cp4.1LG13g10550Cucurbita pepo (Zucchini)cmocpeB657
CmoCh04G026380Cp4.1LG01g25010Cucurbita pepo (Zucchini)cmocpeB673
CmoCh04G026380MELO3C019895.2Melon (DHL92) v3.6.1cmomedB754
CmoCh04G026380CsaV3_6G004230Cucumber (Chinese Long) v3cmocucB0898
CmoCh04G026380Bhi04G001324Wax gourdcmowgoB0858
CmoCh04G026380CsGy6G003930Cucumber (Gy14) v2cgybcmoB815
CmoCh04G026380Carg01678Silver-seed gourdcarcmoB1121
CmoCh04G026380Carg04621Silver-seed gourdcarcmoB0940
The following gene(s) are paralogous to this gene:
GeneParalogueOrganismBlock
CmoCh04G026380CmoCh15G005290Cucurbita moschata (Rifu)cmocmoB262
The following block(s) are covering this gene:
GeneOrganismBlock
CmoCh04G026380Wax gourdcmowgoB0894
CmoCh04G026380Cucurbita moschata (Rifu)cmocmoB345
CmoCh04G026380Cucurbita moschata (Rifu)cmocmoB468
CmoCh04G026380Cucurbita maxima (Rimu)cmacmoB740
CmoCh04G026380Cucumber (Chinese Long) v2cmocuB727
CmoCh04G026380Melon (DHL92) v3.5.1cmomeB652
CmoCh04G026380Watermelon (Charleston Gray)cmowcgB665
CmoCh04G026380Watermelon (97103) v1cmowmB704
CmoCh04G026380Cucurbita pepo (Zucchini)cmocpeB689
CmoCh04G026380Bottle gourd (USVL1VR-Ls)cmolsiB676
CmoCh04G026380Cucumber (Gy14) v2cgybcmoB635
CmoCh04G026380Silver-seed gourdcarcmoB1136
CmoCh04G026380Watermelon (97103) v2cmowmbB741
CmoCh04G026380Watermelon (97103) v2cmowmbB762