Carg04621 (gene) Silver-seed gourd | Cucurbit Genomics Database (CuGenDB)

Overview


Name	Carg04621
Type	gene
Organism	Cucurbita argyrosperma (Silver-seed gourd)
Description	Ferredoxin
Location	Cucurbita_argyrosperma_scaffold_032 : 1501020 .. 1502491 (+)

Genome Viewer

Gene Expression

Sequences

The following sequences are available for this feature:

Gene sequence (with intron)

Legend: polypeptideexonCDSthree_prime_UTR

Hold the cursor over a type above to highlight its positions in the sequence below.

ATGTGGTACGGTGCCGAAAAATTTTAGGATCTGGACCCCTTTTTTTGCTTTCTTAGTCTCCAATCATGCACCAAAGGAACTTTTCTATTAGTCCTTATTGTGCTAGGAACTTGAGCCTGTTATGGATGTATTCTTTTTGTTGTCGTAATTCAGTCTTTGGTCAATGTTTTAAATTCTTTGATGCTTGTGTTTCATCTTGTCTTTTTTTTTTTTTTTATTGTTGTTATTTCCATCTAATTTTAATGTATCGCGTTGTTATAAGGTATTTTAACCACAATTGTATTTGGCTTTACTTGTTGATCGGTTTAAAATTTGATTTTCGTTCAAGAATGAAATGTCATTAAGACTTTCCATGTCCAGTTAGTCATCTGGAACTATGAAATGTTATTGAAACTTTCCATGTCCAGTTAGTCATCTGGAACTATCTCACATCCTCGATTGATTTTTTTTTTTTTTTAAAACTACCACTCAATTTTTAAATTGCTGGAGCTTGTGTGGAATGAGCGTAGTTGATGGAATCTCCAGCATTTTGACGCTATTATGTGAAATATTATGAAGTTGTTTTGTAGTCAAGATCTTGTATGTTTCATTTTGCTGGTTTATCTTTTCATCTTCATTTTCTAATAATAAAGTGTATGATTTCAAGGGTAGAAGTAGCTAAGTTGCTGTGTACTTAATTATCTCTAATCTTCTATTGTGTCTGATCGATGATCGAGGTTTTTCTTTCCTCCTGTTTAAATTCCCTTATTTTATTTTCATGGCTTCAGCTTTCACTACTCGACTCCGATCATGTCGACAGTCAGACTCCCAACATCCTGCTTGATCAGAAATGCTACACCAAGGAAATCCTGTGCCCTAGTTCAGAGGCCATCTTCCTTGAGTTCCTTTAGGAGTGTATCCCGGGCATTTGGATTGAAGTCTTCCTCATTCAAAGTGTCAGCAATGGCTTCTTACAAAGTGAAGTTAATTGGACCAAATGGTGAAGAGAATGAATTCGAGGCCCCTGATGACACTTACATTCTCGACTCGGCTGAGAGTGCTGGATTGGATCTACCCTACTCTTGCAGGGCTGGGGCTTGCTCTACTTGTGCAGGTCAAGTAGTTTCCGGGACAGTTGACCAGACGGACGGATCGTTCTTGGACGACCAGCAGATGGAGAAGGGGTATGTCCTAACCTGCGTGGCATATCCACAATCCGACTGTGTCATTCACACACACAAGGAAGGTGATTTGTTCTGATTTCTTTGTTTGCATGCATTATATCAGTTCAATCTGATTGAAACTTCAATCACTCTCAGACTCTTTTGTGCTTAGTTTTTGAGGTTGATATGTCAATCACTAGAATTGTGTTCACTCTACTGCGAATTAGATGCTGCTTTAGCTAAAAAGGTGAAGCTTTGAACATTATTCATGAATAATAGATATTGGTGTCAAATTTTAGCAAGTAATTGAATGTGCAAATTTGGAGGAGT

mRNA sequence

ATGTGCTTTCACTACTCGACTCCGATCATGTCGACAGTCAGACTCCCAACATCCTGCTTGATCAGAAATGCTACACCAAGGAAATCCTGTGCCCTAGTTCAGAGGCCATCTTCCTTGAGTTCCTTTAGGAGTGTATCCCGGGCATTTGGATTGAAGTCTTCCTCATTCAAAGTGTCAGCAATGGCTTCTTACAAAGTGAAGTTAATTGGACCAAATGGTGAAGAGAATGAATTCGAGGCCCCTGATGACACTTACATTCTCGACTCGGCTGAGAGTGCTGGATTGGATCTACCCTACTCTTGCAGGGCTGGGGCTTGCTCTACTTGTGCAGGTCAAGTAGTTTCCGGGACAGTTGACCAGACGGACGGATCGTTCTTGGACGACCAGCAGATGGAGAAGGGGTATGTCCTAACCTGCGTGGCATATCCACAATCCGACTGTGTCATTCACACACACAAGGAAGGTGATTTGTTCTGATTTCTTTGTTTGCATGCATTATATCAGTTCAATCTGATTGAAACTTCAATCACTCTCAGACTCTTTTGTGCTTAGTTTTTGAGGTTGATATGTCAATCACTAGAATTGTGTTCACTCTACTGCGAATTAGATGCTGCTTTAGCTAAAAAGGTGAAGCTTTGAACATTATTCATGAATAATAGATATTGGTGTCAAATTTTAGCAAGTAATTGAATGTGCAAATTTGGAGGAGT

Coding sequence (CDS)

ATGTGCTTTCACTACTCGACTCCGATCATGTCGACAGTCAGACTCCCAACATCCTGCTTGATCAGAAATGCTACACCAAGGAAATCCTGTGCCCTAGTTCAGAGGCCATCTTCCTTGAGTTCCTTTAGGAGTGTATCCCGGGCATTTGGATTGAAGTCTTCCTCATTCAAAGTGTCAGCAATGGCTTCTTACAAAGTGAAGTTAATTGGACCAAATGGTGAAGAGAATGAATTCGAGGCCCCTGATGACACTTACATTCTCGACTCGGCTGAGAGTGCTGGATTGGATCTACCCTACTCTTGCAGGGCTGGGGCTTGCTCTACTTGTGCAGGTCAAGTAGTTTCCGGGACAGTTGACCAGACGGACGGATCGTTCTTGGACGACCAGCAGATGGAGAAGGGGTATGTCCTAACCTGCGTGGCATATCCACAATCCGACTGTGTCATTCACACACACAAGGAAGGTGATTTGTTCTGA

Protein sequence

MCFHYSTPIMSTVRLPTSCLIRNATPRKSCALVQRPSSLSSFRSVSRAFGLKSSSFKVSAMASYKVKLIGPNGEENEFEAPDDTYILDSAESAGLDLPYSCRAGACSTCAGQVVSGTVDQTDGSFLDDQQMEKGYVLTCVAYPQSDCVIHTHKEGDLF

Homology

[Close]

BLAST of Carg04621 vs. NCBI nr
Match: XP_022922440.1 (ferredoxin, root R-B2-like [Cucurbita moschata] >XP_022922445.1 ferredoxin, root R-B2-like [Cucurbita moschata])

HSP 1 Score: 298.5 bits (763), Expect = 1.3e-77
Identity = 149/149 (100.00%), Postives = 149/149 (100.00%), Query Frame = 0


Query: 10  MSTVRLPTSCLIRNATPRKSCALVQRPSSLSSFRSVSRAFGLKSSSFKVSAMASYKVKLI 69
           MSTVRLPTSCLIRNATPRKSCALVQRPSSLSSFRSVSRAFGLKSSSFKVSAMASYKVKLI
Sbjct: 1   MSTVRLPTSCLIRNATPRKSCALVQRPSSLSSFRSVSRAFGLKSSSFKVSAMASYKVKLI 60

Query: 70  GPNGEENEFEAPDDTYILDSAESAGLDLPYSCRAGACSTCAGQVVSGTVDQTDGSFLDDQ 129
           GPNGEENEFEAPDDTYILDSAESAGLDLPYSCRAGACSTCAGQVVSGTVDQTDGSFLDDQ
Sbjct: 61  GPNGEENEFEAPDDTYILDSAESAGLDLPYSCRAGACSTCAGQVVSGTVDQTDGSFLDDQ 120

Query: 130 QMEKGYVLTCVAYPQSDCVIHTHKEGDLF 159
           QMEKGYVLTCVAYPQSDCVIHTHKEGDLF
Sbjct: 121 QMEKGYVLTCVAYPQSDCVIHTHKEGDLF 149

[Close]

BLAST of Carg04621 vs. NCBI nr
Match: XP_023533022.1 (ferredoxin, root R-B2-like [Cucurbita pepo subsp. pepo])

HSP 1 Score: 295.8 bits (756), Expect = 8.6e-77
Identity = 147/149 (98.66%), Postives = 148/149 (99.33%), Query Frame = 0


Query: 10  MSTVRLPTSCLIRNATPRKSCALVQRPSSLSSFRSVSRAFGLKSSSFKVSAMASYKVKLI 69
           MSTVRLPTSCLIRNATPRKSCALVQRPSSL SFRSVSRAFGLK+SSFKVSAMASYKVKLI
Sbjct: 1   MSTVRLPTSCLIRNATPRKSCALVQRPSSLGSFRSVSRAFGLKASSFKVSAMASYKVKLI 60

Query: 70  GPNGEENEFEAPDDTYILDSAESAGLDLPYSCRAGACSTCAGQVVSGTVDQTDGSFLDDQ 129
           GPNGEENEFEAPDDTYILDSAESAGLDLPYSCRAGACSTCAGQVVSGTVDQTDGSFLDDQ
Sbjct: 61  GPNGEENEFEAPDDTYILDSAESAGLDLPYSCRAGACSTCAGQVVSGTVDQTDGSFLDDQ 120

Query: 130 QMEKGYVLTCVAYPQSDCVIHTHKEGDLF 159
           QMEKGYVLTCVAYPQSDCVIHTHKEGDLF
Sbjct: 121 QMEKGYVLTCVAYPQSDCVIHTHKEGDLF 149

[Close]

BLAST of Carg04621 vs. NCBI nr
Match: XP_022990479.1 (ferredoxin, root R-B2-like [Cucurbita maxima] >XP_022990480.1 ferredoxin, root R-B2-like [Cucurbita maxima])

HSP 1 Score: 293.9 bits (751), Expect = 3.3e-76
Identity = 146/149 (97.99%), Postives = 147/149 (98.66%), Query Frame = 0


Query: 10  MSTVRLPTSCLIRNATPRKSCALVQRPSSLSSFRSVSRAFGLKSSSFKVSAMASYKVKLI 69
           MSTVRLPTSCLIRNATPRKSCALVQRPSSL SFR+VSRAFGLKSSSFKVSAMASYKVKLI
Sbjct: 1   MSTVRLPTSCLIRNATPRKSCALVQRPSSLGSFRNVSRAFGLKSSSFKVSAMASYKVKLI 60

Query: 70  GPNGEENEFEAPDDTYILDSAESAGLDLPYSCRAGACSTCAGQVVSGTVDQTDGSFLDDQ 129
           GPNGEENEFEAPDDTYILDSAESAGLDLPYSCRAGACSTCAGQVVSGTVDQ DGSFLDDQ
Sbjct: 61  GPNGEENEFEAPDDTYILDSAESAGLDLPYSCRAGACSTCAGQVVSGTVDQADGSFLDDQ 120

Query: 130 QMEKGYVLTCVAYPQSDCVIHTHKEGDLF 159
           QMEKGYVLTCVAYPQSDCVIHTHKEGDLF
Sbjct: 121 QMEKGYVLTCVAYPQSDCVIHTHKEGDLF 149

[Close]

BLAST of Carg04621 vs. NCBI nr
Match: XP_023551682.1 (ferredoxin, root R-B2-like [Cucurbita pepo subsp. pepo])

HSP 1 Score: 275.4 bits (703), Expect = 1.2e-70
Identity = 134/149 (89.93%), Postives = 142/149 (95.30%), Query Frame = 0


Query: 10  MSTVRLPTSCLIRNATPRKSCALVQRPSSLSSFRSVSRAFGLKSSSFKVSAMASYKVKLI 69
           MS + LPTSCLI++ATPR+SCALVQRPSSL S RSVSRAFGLKSSSFKV+AMA+YKVKLI
Sbjct: 1   MSAINLPTSCLIKSATPRRSCALVQRPSSLGSVRSVSRAFGLKSSSFKVTAMAAYKVKLI 60

Query: 70  GPNGEENEFEAPDDTYILDSAESAGLDLPYSCRAGACSTCAGQVVSGTVDQTDGSFLDDQ 129
           GPNGEENEFEAPDD YILDSAE AGLDLPYSCRAGACSTCAGQVVSGTVDQ+DGSFLDD 
Sbjct: 61  GPNGEENEFEAPDDAYILDSAEEAGLDLPYSCRAGACSTCAGQVVSGTVDQSDGSFLDDN 120

Query: 130 QMEKGYVLTCVAYPQSDCVIHTHKEGDLF 159
           QMEKGYVLTCVAYPQSDCVIHTHKEGDL+
Sbjct: 121 QMEKGYVLTCVAYPQSDCVIHTHKEGDLY 149

[Close]

BLAST of Carg04621 vs. NCBI nr
Match: XP_022992802.1 (ferredoxin, root R-B2-like [Cucurbita maxima] >XP_022992803.1 ferredoxin, root R-B2-like [Cucurbita maxima])

HSP 1 Score: 273.5 bits (698), Expect = 4.6e-70
Identity = 135/150 (90.00%), Postives = 143/150 (95.33%), Query Frame = 0


Query: 10  MSTVRLPTSCLIRNATPRKSCALVQRPSSLSSFRSVSRAFGLKSSSFKVSAMA-SYKVKL 69
           MS + LPTSCLI++ATPR+SCALVQRPSSL SFRSVSRAFGLKSSSFKV+AMA +YKVKL
Sbjct: 1   MSAINLPTSCLIKSATPRRSCALVQRPSSLGSFRSVSRAFGLKSSSFKVTAMATTYKVKL 60

Query: 70  IGPNGEENEFEAPDDTYILDSAESAGLDLPYSCRAGACSTCAGQVVSGTVDQTDGSFLDD 129
           IGPNGEENEFEAPDD YILDSAE AGLDLPYSCRAGACSTCAGQVVSGTVDQ+DGSFLDD
Sbjct: 61  IGPNGEENEFEAPDDAYILDSAEDAGLDLPYSCRAGACSTCAGQVVSGTVDQSDGSFLDD 120

Query: 130 QQMEKGYVLTCVAYPQSDCVIHTHKEGDLF 159
            QMEKGYVLTCVAYPQSDCVIHTHKEGDL+
Sbjct: 121 NQMEKGYVLTCVAYPQSDCVIHTHKEGDLY 150

[Close]

BLAST of Carg04621 vs. TAIR10
Match: AT2G27510.1 (ferredoxin 3)

HSP 1 Score: 185.3 bits (469), Expect = 3.0e-47
Identity = 96/155 (61.94%), Postives = 116/155 (74.84%), Query Frame = 0


Query: 10  MSTVRLP----TSCLIRNATPRKSCALVQRPSSLSSFRSVSRAFGLKSSSFKVSAMAS-- 69
           M+TVR+     T  ++R+ T  K         S+ S + VSR+FGLK S+    A  S  
Sbjct: 1   MATVRISSTSMTKAVLRSQTTNKLITNKSYNLSVGSTKRVSRSFGLKCSANSGGATMSAV 60

Query: 70  YKVKLIGPNGEENEFEAPDDTYILDSAESAGLDLPYSCRAGACSTCAGQVVSGTVDQTDG 129
           YKVKL+GP+G+E+EFE  DD YILD+AE AG+DLPYSCRAGACSTCAGQ+VSG VDQ+DG
Sbjct: 61  YKVKLLGPDGQEDEFEVQDDQYILDAAEEAGVDLPYSCRAGACSTCAGQIVSGNVDQSDG 120

Query: 130 SFLDDQQMEKGYVLTCVAYPQSDCVIHTHKEGDLF 159
           SFL+D  +EKGYVLTCVAYPQSDCVIHTHKE +LF
Sbjct: 121 SFLEDSHLEKGYVLTCVAYPQSDCVIHTHKETELF 155

[Close]

BLAST of Carg04621 vs. TAIR10
Match: AT1G10960.1 (ferredoxin 1)

HSP 1 Score: 154.8 bits (390), Expect = 4.3e-38
Identity = 81/126 (64.29%), Postives = 98/126 (77.78%), Query Frame = 0


Query: 34  QRPSSLSS--FRSVSRAFGLKSSSF---KVSAMASYKVKLIGPNGEENEFEAPDDTYILD 93
           Q P SL S  F +    FGLKSS+    +V+AMA+YKVK I P GE+ E E  +D Y+LD
Sbjct: 20  QTPISLRSLPFANTQSLFGLKSSTARGGRVTAMATYKVKFITPEGEQ-EVECEEDVYVLD 79

Query: 94  SAESAGLDLPYSCRAGACSTCAGQVVSGTVDQTDGSFLDDQQMEKGYVLTCVAYPQSDCV 153
           +AE AGLDLPYSCRAG+CS+CAG+VVSG++DQ+D SFLDD+QM +GYVLTCVAYP SD V
Sbjct: 80  AAEEAGLDLPYSCRAGSCSSCAGKVVSGSIDQSDQSFLDDEQMSEGYVLTCVAYPTSDVV 139

Query: 154 IHTHKE 155
           I THKE
Sbjct: 140 IETHKE 144

[Close]

BLAST of Carg04621 vs. TAIR10
Match: AT1G60950.1 (2Fe-2S ferredoxin-like superfamily protein)

HSP 1 Score: 145.2 bits (365), Expect = 3.4e-35
Identity = 81/146 (55.48%), Postives = 104/146 (71.23%), Query Frame = 0


Query: 17  TSCLIRNATPRKSCALVQRPSSLSSFRSVS--RAFGLKSSSF---KVSAMASYKVKLIGP 76
           +S ++  +  R+S A    P SL S  S +    FGLKS +    +V+AMA+YKVK I P
Sbjct: 7   SSAIVGTSFIRRSPA----PISLRSLPSANTQSLFGLKSGTARGGRVTAMATYKVKFITP 66

Query: 77  NGEENEFEAPDDTYILDSAESAGLDLPYSCRAGACSTCAGQVVSGTVDQTDGSFLDDQQM 136
            G E E E  DD Y+LD+AE AG+DLPYSCRAG+CS+CAG+VVSG+VDQ+D SFLDD+Q+
Sbjct: 67  EG-ELEVECDDDVYVLDAAEEAGIDLPYSCRAGSCSSCAGKVVSGSVDQSDQSFLDDEQI 126

Query: 137 EKGYVLTCVAYPQSDCVIHTHKEGDL 158
            +G+VLTC AYP SD  I THKE D+
Sbjct: 127 GEGFVLTCAAYPTSDVTIETHKEEDI 147

[Close]

BLAST of Carg04621 vs. TAIR10
Match: AT5G10000.1 (ferredoxin 4)

HSP 1 Score: 140.2 bits (352), Expect = 1.1e-33
Identity = 67/112 (59.82%), Postives = 85/112 (75.89%), Query Frame = 0


Query: 49  FGLKSSS---FKVSAMASYKVKLIGPNGEENEFEAPDDTYILDSAESAGLDLPYSCRAGA 108
           FGL SS     KV A  S KVKLI P GEE E E  +D  IL+SAE+AGL+LPYSCR+G 
Sbjct: 36  FGLSSSRGNFGKVFAKESRKVKLISPEGEEQEIEGNEDCCILESAENAGLELPYSCRSGT 95

Query: 109 CSTCAGQVVSGTVDQTDGSFLDDQQMEKGYVLTCVAYPQSDCVIHTHKEGDL 158
           C TC G++VSG VDQ+ GSFL+++Q++KGY+LTC+A P  DCV++THK+ DL
Sbjct: 96  CGTCCGKLVSGKVDQSLGSFLEEEQIQKGYILTCIALPLEDCVVYTHKQSDL 147

[Close]

BLAST of Carg04621 vs. TAIR10
Match: AT4G14890.1 (2Fe-2S ferredoxin-like superfamily protein)

HSP 1 Score: 82.4 bits (202), Expect = 2.7e-16
Identity = 56/154 (36.36%), Postives = 77/154 (50.00%), Query Frame = 0


Query: 11  STVRLPTSCL-------IRNATPRKSCALVQRPSSLSSFRSVSRAFGLKSSSFKVSAMAS 70
           ST+ LP   L       +RNAT         R + L++ R ++RA               
Sbjct: 11  STISLPKPYLSNSFSFPLRNAT---LSTTTNRRNFLTTGRIIARA--------------- 70

Query: 71  YKVKLIGPNGEENEFEAPDDTYILDSAESAGLDLPYSCRAGACSTCAGQVVSGTVDQTDG 130
           YKV ++  +G+  E E   D  IL  A  +GLD+PY C  G C TC  ++V+GTVDQ+ G
Sbjct: 71  YKV-VVEHDGKTTELEVEPDETILSKALDSGLDVPYDCNLGVCMTCPAKLVTGTVDQS-G 130

Query: 131 SFLDDQQMEKGYVLTCVAYPQSDCVIHTHKEGDL 158
             L D  +E+GY L C +YP SDC I    E +L
Sbjct: 131 GMLSDDVVERGYTLLCASYPTSDCHIKMIPEEEL 144

[Close]

BLAST of Carg04621 vs. Swiss-Prot
Match: sp|P27788|FER3_MAIZE (Ferredoxin-3, chloroplastic OS=Zea mays OX=4577 GN=FDX3 PE=1 SV=1)

HSP 1 Score: 195.7 bits (496), Expect = 4.0e-49
Identity = 101/152 (66.45%), Postives = 122/152 (80.26%), Query Frame = 0


Query: 10  MSTVRLPTSC-LIRNA-TPRKSCALVQRPSSLSSFRSVSRAFGLKSS-SFKVSAMASYKV 69
           MST    TSC L+ N  T + S   V+ PSSLS F  V++   LK+S    VSAMA YKV
Sbjct: 1   MSTSTFATSCTLLGNVRTTQASQTAVKSPSSLSFFSQVTKVPSLKTSKKLDVSAMAVYKV 60

Query: 70  KLIGPNGEENEFEAPDDTYILDSAESAGLDLPYSCRAGACSTCAGQVVSGTVDQTDGSFL 129
           KL+GP GEE+EF+APDD YILD+AE+AG++LPYSCRAGACSTCAG++ SG+VDQ+DGSFL
Sbjct: 61  KLVGPEGEEHEFDAPDDAYILDAAETAGVELPYSCRAGACSTCAGKIESGSVDQSDGSFL 120

Query: 130 DDQQMEKGYVLTCVAYPQSDCVIHTHKEGDLF 159
           DD Q E+GYVLTCV+YP+SDCVIHTHKEGDL+
Sbjct: 121 DDGQQEEGYVLTCVSYPKSDCVIHTHKEGDLY 152

[Close]

BLAST of Carg04621 vs. Swiss-Prot
Match: sp|Q9ZQG8|FER3_ARATH (Ferredoxin-3, chloroplastic OS=Arabidopsis thaliana OX=3702 GN=FD3 PE=1 SV=1)

HSP 1 Score: 185.3 bits (469), Expect = 5.4e-46
Identity = 96/155 (61.94%), Postives = 116/155 (74.84%), Query Frame = 0


Query: 10  MSTVRLP----TSCLIRNATPRKSCALVQRPSSLSSFRSVSRAFGLKSSSFKVSAMAS-- 69
           M+TVR+     T  ++R+ T  K         S+ S + VSR+FGLK S+    A  S  
Sbjct: 1   MATVRISSTSMTKAVLRSQTTNKLITNKSYNLSVGSTKRVSRSFGLKCSANSGGATMSAV 60

Query: 70  YKVKLIGPNGEENEFEAPDDTYILDSAESAGLDLPYSCRAGACSTCAGQVVSGTVDQTDG 129
           YKVKL+GP+G+E+EFE  DD YILD+AE AG+DLPYSCRAGACSTCAGQ+VSG VDQ+DG
Sbjct: 61  YKVKLLGPDGQEDEFEVQDDQYILDAAEEAGVDLPYSCRAGACSTCAGQIVSGNVDQSDG 120

Query: 130 SFLDDQQMEKGYVLTCVAYPQSDCVIHTHKEGDLF 159
           SFL+D  +EKGYVLTCVAYPQSDCVIHTHKE +LF
Sbjct: 121 SFLEDSHLEKGYVLTCVAYPQSDCVIHTHKETELF 155

[Close]

BLAST of Carg04621 vs. Swiss-Prot
Match: sp|P14937|FER2_RAPSA (Ferredoxin, root R-B2 OS=Raphanus sativus OX=3726 PE=1 SV=1)

HSP 1 Score: 167.9 bits (424), Expect = 8.9e-41
Identity = 76/97 (78.35%), Postives = 85/97 (87.63%), Query Frame = 0


Query: 62  ASYKVKLIGPNGEENEFEAPDDTYILDSAESAGLDLPYSCRAGACSTCAGQVVSGTVDQT 121
           A YKVKLIGP GEENEFE  DD +ILD+AE AG+DLPYSCRAGACSTCAGQ+V G VDQ+
Sbjct: 2   AVYKVKLIGPEGEENEFEVQDDQFILDAAEEAGVDLPYSCRAGACSTCAGQIVKGQVDQS 61

Query: 122 DGSFLDDQQMEKGYVLTCVAYPQSDCVIHTHKEGDLF 159
           +GSFL+D   EKG+VLTCVAYPQSDCVIHTHKE +LF
Sbjct: 62  EGSFLEDDHFEKGFVLTCVAYPQSDCVIHTHKETELF 98

[Close]

BLAST of Carg04621 vs. Swiss-Prot
Match: sp|P14936|FER1_RAPSA (Ferredoxin, root R-B1 OS=Raphanus sativus OX=3726 PE=1 SV=1)

HSP 1 Score: 166.0 bits (419), Expect = 3.4e-40
Identity = 75/97 (77.32%), Postives = 85/97 (87.63%), Query Frame = 0


Query: 62  ASYKVKLIGPNGEENEFEAPDDTYILDSAESAGLDLPYSCRAGACSTCAGQVVSGTVDQT 121
           A YKVKLIGP+G+ENEF+ PDD YILD+AE AG+DLPYSCRAGACSTCAG++  G VDQ+
Sbjct: 2   AVYKVKLIGPDGQENEFDVPDDQYILDAAEEAGVDLPYSCRAGACSTCAGKIEKGQVDQS 61

Query: 122 DGSFLDDQQMEKGYVLTCVAYPQSDCVIHTHKEGDLF 159
           DGSFL+D   EKGYVLTCVAYPQSD VIHTHKE +LF
Sbjct: 62  DGSFLEDHHFEKGYVLTCVAYPQSDLVIHTHKEEELF 98

[Close]

BLAST of Carg04621 vs. Swiss-Prot
Match: sp|P94044|FER6_MAIZE (Ferredoxin-6, chloroplastic OS=Zea mays OX=4577 GN=FDX6 PE=2 SV=1)

HSP 1 Score: 161.4 bits (407), Expect = 8.3e-39
Identity = 74/118 (62.71%), Postives = 102/118 (86.44%), Query Frame = 0


Query: 43  RSVSRAFGLKSSSFKVSAMAS--YKVKLIGPNGEENEFEAPDDTYILDSAESAGLDLPYS 102
           R  +RA G + SS  V++ A+  +KVKL+GP+G E+EFEAPDDTYIL++AE+AG++LP+S
Sbjct: 38  RQAARASGPRLSSRFVASAAAVLHKVKLVGPDGTEHEFEAPDDTYILEAAETAGVELPFS 97

Query: 103 CRAGACSTCAGQVVSGTVDQTDGSFLDDQQMEKGYVLTCVAYPQSDCVIHTHKEGDLF 159
           CRAG+CSTCAG++ +G VDQ++GSFLDD QM +GY+LTC++YP++DCVIHTHKE DL+
Sbjct: 98  CRAGSCSTCAGRMSAGEVDQSEGSFLDDGQMAEGYLLTCISYPKADCVIHTHKEEDLY 155

[Close]

BLAST of Carg04621 vs. TrEMBL
Match: tr|A0A1S3C4A6|A0A1S3C4A6_CUCME (Ferredoxin OS=Cucumis melo OX=3656 GN=LOC103496509 PE=3 SV=1)

HSP 1 Score: 263.8 bits (673), Expect = 2.4e-67
Identity = 132/149 (88.59%), Postives = 140/149 (93.96%), Query Frame = 0


Query: 10  MSTVRLPTSCLIRNATPRKSCALVQRPSSLSSFRSVSRAFGLKSSSFKVSAMASYKVKLI 69
           MSTV LPTSCLI+  T R+S ALVQRPSSL SFRSVS++FGLKSS  KVSAMASYKVKLI
Sbjct: 1   MSTVILPTSCLIKTPTLRRSNALVQRPSSLCSFRSVSQSFGLKSSQSKVSAMASYKVKLI 60

Query: 70  GPNGEENEFEAPDDTYILDSAESAGLDLPYSCRAGACSTCAGQVVSGTVDQTDGSFLDDQ 129
           GPNGEENEFEAPDD YILDSAE+AGLDLPYSCRAGACSTCAGQVVSGTVDQTDGSFLDD+
Sbjct: 61  GPNGEENEFEAPDDAYILDSAENAGLDLPYSCRAGACSTCAGQVVSGTVDQTDGSFLDDK 120

Query: 130 QMEKGYVLTCVAYPQSDCVIHTHKEGDLF 159
           QME+GYVLTCVAYPQSDCVIHTHKEGDL+
Sbjct: 121 QMEQGYVLTCVAYPQSDCVIHTHKEGDLY 149

[Close]

BLAST of Carg04621 vs. TrEMBL
Match: tr|A0A0A0KNA3|A0A0A0KNA3_CUCSA (Ferredoxin OS=Cucumis sativus OX=3659 GN=Csa_5G413260 PE=3 SV=1)

HSP 1 Score: 263.1 bits (671), Expect = 4.1e-67
Identity = 132/149 (88.59%), Postives = 140/149 (93.96%), Query Frame = 0


Query: 10  MSTVRLPTSCLIRNATPRKSCALVQRPSSLSSFRSVSRAFGLKSSSFKVSAMASYKVKLI 69
           MSTV LPTS LI+  T R+S ALVQRPSSL SFRSVSR+FGLKSS FKVSAMASYKVKLI
Sbjct: 1   MSTVTLPTSSLIKPPTLRRSNALVQRPSSLCSFRSVSRSFGLKSSQFKVSAMASYKVKLI 60

Query: 70  GPNGEENEFEAPDDTYILDSAESAGLDLPYSCRAGACSTCAGQVVSGTVDQTDGSFLDDQ 129
           GP+GEENEF+APDD YILDSAE+AGLDLPYSCRAGACSTCAGQVVSGTVDQTDGSFLDD+
Sbjct: 61  GPDGEENEFDAPDDAYILDSAENAGLDLPYSCRAGACSTCAGQVVSGTVDQTDGSFLDDK 120

Query: 130 QMEKGYVLTCVAYPQSDCVIHTHKEGDLF 159
           QMEKGYVLTCVAYPQSDCVIHTHKEGDL+
Sbjct: 121 QMEKGYVLTCVAYPQSDCVIHTHKEGDLY 149

[Close]

BLAST of Carg04621 vs. TrEMBL
Match: tr|A0A2N9G5C9|A0A2N9G5C9_FAGSY (Ferredoxin OS=Fagus sylvatica OX=28930 GN=FSB_LOCUS22640 PE=3 SV=1)

HSP 1 Score: 251.5 bits (641), Expect = 1.2e-63
Identity = 120/153 (78.43%), Postives = 139/153 (90.85%), Query Frame = 0


Query: 6   STPIMSTVRLPTSCLIRNATPRKSCALVQRPSSLSSFRSVSRAFGLKSSSFKVSAMASYK 65
           ST  MST+R+P SCL + A P +SCAL++ PSSL S +SVS+ FGLKSS FK+SAMA YK
Sbjct: 2   STVNMSTLRVPMSCLSKTAPPSRSCALIKSPSSLGSVKSVSKTFGLKSSPFKISAMAVYK 61

Query: 66  VKLIGPNGEENEFEAPDDTYILDSAESAGLDLPYSCRAGACSTCAGQVVSGTVDQTDGSF 125
           VKLIGP+GEENEF+APDDTYILDSAE+AGL+LPYSCRAGACSTCAGQ++SGTVDQ+DGSF
Sbjct: 62  VKLIGPDGEENEFDAPDDTYILDSAENAGLELPYSCRAGACSTCAGQMISGTVDQSDGSF 121

Query: 126 LDDQQMEKGYVLTCVAYPQSDCVIHTHKEGDLF 159
           LDD+QMEKGYVLTCV+YP SDCVIHTHKEGDL+
Sbjct: 122 LDDKQMEKGYVLTCVSYPTSDCVIHTHKEGDLY 154

[Close]

BLAST of Carg04621 vs. TrEMBL
Match: tr|A0A2P4LUE8|A0A2P4LUE8_QUESU (Ferredoxin OS=Quercus suber OX=58331 GN=CFP56_22774 PE=3 SV=1)

HSP 1 Score: 244.2 bits (622), Expect = 2.0e-61
Identity = 117/149 (78.52%), Postives = 134/149 (89.93%), Query Frame = 0


Query: 10  MSTVRLPTSCLIRNATPRKSCALVQRPSSLSSFRSVSRAFGLKSSSFKVSAMASYKVKLI 69
           MSTVR+P SCL +   P +SCAL++ PSS  S +SVS+ FGLKSS FK+SAMA YKVKLI
Sbjct: 1   MSTVRVPVSCLPKIPPPSRSCALIKSPSSFGSVKSVSKRFGLKSSPFKMSAMAVYKVKLI 60

Query: 70  GPNGEENEFEAPDDTYILDSAESAGLDLPYSCRAGACSTCAGQVVSGTVDQTDGSFLDDQ 129
           GP+GEENEF+APDD YILDSAE+AGL+LPYSCRAGACSTCAGQ+VSG+VDQ+DGSFLDD+
Sbjct: 61  GPDGEENEFDAPDDAYILDSAENAGLELPYSCRAGACSTCAGQLVSGSVDQSDGSFLDDK 120

Query: 130 QMEKGYVLTCVAYPQSDCVIHTHKEGDLF 159
           QMEKGYVLTCV+YP SDCVIHTHKEGDLF
Sbjct: 121 QMEKGYVLTCVSYPSSDCVIHTHKEGDLF 149

[Close]

BLAST of Carg04621 vs. TrEMBL
Match: tr|A0A2N9G2G4|A0A2N9G2G4_FAGSY (Ferredoxin OS=Fagus sylvatica OX=28930 GN=FSB_LOCUS21467 PE=3 SV=1)

HSP 1 Score: 240.0 bits (611), Expect = 3.7e-60
Identity = 112/141 (79.43%), Postives = 130/141 (92.20%), Query Frame = 0


Query: 18  SCLIRNATPRKSCALVQRPSSLSSFRSVSRAFGLKSSSFKVSAMASYKVKLIGPNGEENE 77
           SCL + A P +SCAL++ PSSL S +SVS+ FGLKSS FK+SAMA YKVKL+GP+GEENE
Sbjct: 2   SCLSKTAPPSRSCALIKSPSSLGSVKSVSKTFGLKSSPFKISAMAVYKVKLVGPDGEENE 61

Query: 78  FEAPDDTYILDSAESAGLDLPYSCRAGACSTCAGQVVSGTVDQTDGSFLDDQQMEKGYVL 137
           F+APDDTYILDSAE+AGL+LPYSCRAGACSTCAGQ++SGTVDQ+DGSFLDD+QMEKGYVL
Sbjct: 62  FDAPDDTYILDSAENAGLELPYSCRAGACSTCAGQMISGTVDQSDGSFLDDKQMEKGYVL 121

Query: 138 TCVAYPQSDCVIHTHKEGDLF 159
           TCV+YP SDCVIHTHKEGDL+
Sbjct: 122 TCVSYPTSDCVIHTHKEGDLY 142

The following BLAST results are available for this feature:

BLAST of Carg04621 vs. NCBI nr


Match Name	E-value	Identity	Description
XP_022922440.1	1.3e-77	100.00	ferredoxin, root R-B2-like [Cucurbita moschata] >XP_022922445.1 ferredoxin, root...	[more]
XP_023533022.1	8.6e-77	98.66	ferredoxin, root R-B2-like [Cucurbita pepo subsp. pepo]	[more]
XP_022990479.1	3.3e-76	97.99	ferredoxin, root R-B2-like [Cucurbita maxima] >XP_022990480.1 ferredoxin, root R...	[more]
XP_023551682.1	1.2e-70	89.93	ferredoxin, root R-B2-like [Cucurbita pepo subsp. pepo]	[more]
XP_022992802.1	4.6e-70	90.00	ferredoxin, root R-B2-like [Cucurbita maxima] >XP_022992803.1 ferredoxin, root R...	[more]

BLAST of Carg04621 vs. TAIR10


Match Name	E-value	Identity	Description
AT2G27510.1	3.0e-47	61.94	ferredoxin 3	[more]
AT1G10960.1	4.3e-38	64.29	ferredoxin 1	[more]
AT1G60950.1	3.4e-35	55.48	2Fe-2S ferredoxin-like superfamily protein	[more]
AT5G10000.1	1.1e-33	59.82	ferredoxin 4	[more]
AT4G14890.1	2.7e-16	36.36	2Fe-2S ferredoxin-like superfamily protein	[more]

BLAST of Carg04621 vs. Swiss-Prot


Match Name	E-value	Identity	Description
sp\|P27788\|FER3_MAIZE	4.0e-49	66.45	Ferredoxin-3, chloroplastic OS=Zea mays OX=4577 GN=FDX3 PE=1 SV=1	[more]
sp\|Q9ZQG8\|FER3_ARATH	5.4e-46	61.94	Ferredoxin-3, chloroplastic OS=Arabidopsis thaliana OX=3702 GN=FD3 PE=1 SV=1	[more]
sp\|P14937\|FER2_RAPSA	8.9e-41	78.35	Ferredoxin, root R-B2 OS=Raphanus sativus OX=3726 PE=1 SV=1	[more]
sp\|P14936\|FER1_RAPSA	3.4e-40	77.32	Ferredoxin, root R-B1 OS=Raphanus sativus OX=3726 PE=1 SV=1	[more]
sp\|P94044\|FER6_MAIZE	8.3e-39	62.71	Ferredoxin-6, chloroplastic OS=Zea mays OX=4577 GN=FDX6 PE=2 SV=1	[more]

BLAST of Carg04621 vs. TrEMBL


Match Name	E-value	Identity	Description
tr\|A0A1S3C4A6\|A0A1S3C4A6_CUCME	2.4e-67	88.59	Ferredoxin OS=Cucumis melo OX=3656 GN=LOC103496509 PE=3 SV=1	[more]
tr\|A0A0A0KNA3\|A0A0A0KNA3_CUCSA	4.1e-67	88.59	Ferredoxin OS=Cucumis sativus OX=3659 GN=Csa_5G413260 PE=3 SV=1	[more]
tr\|A0A2N9G5C9\|A0A2N9G5C9_FAGSY	1.2e-63	78.43	Ferredoxin OS=Fagus sylvatica OX=28930 GN=FSB_LOCUS22640 PE=3 SV=1	[more]
tr\|A0A2P4LUE8\|A0A2P4LUE8_QUESU	2.0e-61	78.52	Ferredoxin OS=Quercus suber OX=58331 GN=CFP56_22774 PE=3 SV=1	[more]
tr\|A0A2N9G2G4\|A0A2N9G2G4_FAGSY	3.7e-60	79.43	Ferredoxin OS=Fagus sylvatica OX=28930 GN=FSB_LOCUS21467 PE=3 SV=1	[more]

Annotated Terms

The following terms have been associated with this gene:

Vocabulary: **Molecular Function**
Term	Definition
GO:0051536	iron-sulfur cluster binding
GO:0051537	2 iron, 2 sulfur cluster binding
GO:0009055	electron carrier activity

Vocabulary: **Biological Process**
Term	Definition
GO:0022900	electron transport chain

Vocabulary: **INTERPRO**
Term	Definition
IPR036010	2Fe-2S_ferredoxin-like_sf
IPR006058	2Fe2S_fd_BS
IPR012675	Beta-grasp_dom_sf
IPR001041	2Fe-2S_ferredoxin-type
IPR010241	Fd_pln

GO Annotation

GO Assignments

This gene is annotated with the following GO terms.

Category	Term Accession	Term Name
biological_process	GO:0022900	electron transport chain
cellular_component	GO:0005575	cellular_component
molecular_function	GO:0051537	2 iron, 2 sulfur cluster binding
molecular_function	GO:0009055	electron carrier activity
molecular_function	GO:0051536	iron-sulfur cluster binding

Relationships

The following mRNA feature(s) are a part of this gene:


Feature Name	Unique Name	Type
Carg04621-RA	Carg04621-RA	mRNA

InterPro

Analysis Name: InterPro Annotations of silver-seed gourd
Date Performed: 2019-03-07


IPR Term	IPR Description	Source	Source Term	Source Description	Alignment
IPR010241	Ferredoxin [2Fe-2S], plant	TIGRFAM	TIGR02008	TIGR02008	coord: 62..158 e-value: 9.3E-50 score: 164.4
IPR001041	2Fe-2S ferredoxin-type iron-sulfur binding domain	PFAM	PF00111	Fer2	coord: 71..144 e-value: 4.8E-20 score: 71.2
IPR001041	2Fe-2S ferredoxin-type iron-sulfur binding domain	PROSITE	PS51085	2FE2S_FER_2	coord: 64..155 score: 12.997
IPR001041	2Fe-2S ferredoxin-type iron-sulfur binding domain	CDD	cd00207	fer2	coord: 69..150 e-value: 5.08181E-31 score: 107.866
IPR012675	Beta-grasp domain superfamily	GENE3D	G3DSA:3.10.20.30		coord: 61..158 e-value: 2.5E-33 score: 115.9
None	No IPR available	PANTHER	PTHR43112	FAMILY NOT NAMED	coord: 6..158
None	No IPR available	PANTHER	PTHR43112:SF12	SUBFAMILY NOT NAMED	coord: 6..158
IPR006058	2Fe-2S ferredoxin, iron-sulphur binding site	PROSITE	PS00197	2FE2S_FER_1	coord: 101..109
IPR036010	2Fe-2S ferredoxin-like superfamily	SUPERFAMILY	SSF54292	2Fe-2S ferredoxin-like	coord: 47..154

Synteny

The following gene(s) are orthologous to this gene:


Gene	Orthologue	Organism	Block
Carg04621	Cla013694	Watermelon (97103) v1	carwmB0682
Carg04621	Csa6G045160	Cucumber (Chinese Long) v2	carcuB0711
Carg04621	MELO3C019895	Melon (DHL92) v3.5.1	carmeB0686
Carg04621	ClCG08G008270	Watermelon (Charleston Gray)	carwcgB0663
Carg04621	CSPI06G03960	Wild cucumber (PI 183967)	carcpiB0725
Carg04621	Cucsa.364660	Cucumber (Gy14) v1	carcgyB0771
Carg04621	CmaCh04G025190	Cucurbita maxima (Rimu)	carcmaB0967
Carg04621	CmaCh15G005210	Cucurbita maxima (Rimu)	carcmaB0961
Carg04621	CmoCh04G026380	Cucurbita moschata (Rifu)	carcmoB0940
Carg04621	Lsi08G006470	Bottle gourd (USVL1VR-Ls)	carlsiB628
Carg04621	Cp4.1LG01g25010	Cucurbita pepo (Zucchini)	carcpeB0965
Carg04621	CsGy6G003930	Cucumber (Gy14) v2	carcgybB0689
Carg04621	MELO3C019895.2	Melon (DHL92) v3.6.1	carmedB0699
Carg04621	CsaV3_6G004230	Cucumber (Chinese Long) v3	carcucB0728
Carg04621	Bhi04G001324	Wax gourd	carwgoB0806

The following gene(s) are paralogous to this gene:


Gene	Paralogue	Organism	Block
Carg04621	Carg01678	Silver-seed gourd	carcarB577

The following block(s) are covering this gene:


Gene	Organism	Block
Carg04621	Watermelon (97103) v2	carwmbB0713
Carg04621	Cucurbita moschata (Rifu)	carcmoB0936
Carg04621	Cucurbita pepo (Zucchini)	carcpeB0958
Carg04621	Cucurbita pepo (Zucchini)	carcpeB0962