CSPI06G03960 (gene) Wild cucumber (PI 183967) | Cucurbit Genomics Database (CuGenDB)

Overview


Name	CSPI06G03960
Type	gene
Organism	Cucumis sativus (Wild cucumber (PI 183967))
Description	Ferredoxin family protein
Location	Chr6 : 3699972 .. 3702403 (+)

Genome Viewer

Gene Expression

Sequences

The following sequences are available for this feature:

Gene sequence (with intron)

Legend: five_prime_UTRCDSthree_prime_UTR

Hold the cursor over a type above to highlight its positions in the sequence below.

AAGAGAGAGAGAAGGAAAGAAAGAATTTAGTTAAAATAGAAAGGGTGATAGAGAACCATACCCTTGGGTCTCACCAACTCAGTCGTCTTCGTTTGGAGTTTGTTCTTAAGAAAGGAAAGAAAAGGATAGACAGTGACAAACAAACACGTACTTCTCTTTTGTTCTCTTCCCTTCTTTTCTCTCTTCTTCCAGCGCCGTTTAGGGCTTCCACTTTCCATCTCCATTTCCTTCAGATCCCTCTCTCCCTCTCTCTCCCTTCGTAAGATCACTTCTCTCTCCTTTTCATTCCTTCTTTCTCTAAGTTTTCGCTCTTTTTTTTTTTTCTTCTTACGCTTTATGTTCTCTTTCTTTGCTTCTTTACTGGATCAACCTTTCTTGCGTATTTAATGCTCTTGATTTTTCTTTTATATTTCACCTATTGATTTCTCTTGATTTGTTTTCTCTTTCTTTCCTTTCGTTTATTCCACCTATTGTCTTGGAAGCTCCGCTGATGATGAATGAATGAACGCTTCACACTAGTGATTCTTTTTTTTTTTTTTTCCTTTTCGTTTTTTCAATTTTTGAATTGTTCGAGGTTTTGGTTGTTGTTGCTCTGATGATATGATATGATATGATATGATATTCACGAGGTCTGATGCTTCTGTTGTCATTTTATCGCCTTGCATGCTTGTTGAGTCTTCTTTCCATTCCATATGAACTATTGGTGGTGATTTTGTTTAAGTTGTTCTGTTTTCTTTGCGGGACGACGGTGTGAAAAATGTTTAGGAATTAGGATCTGGTCCGTTTTTTATTTTTATTTCTTTACTGTTACTTCCTTTTGTGCTGCTCAGATTGTTTGTTGTGGATTGAACAATCGATAAACTAGTGTATTCTTTTCATTTGCTCAATAAAAGAAACATTTATCCGTTATTTCAAAAACTTTGAGGTATCCTTTTTTCTGTTTCCTTTCAACTTTTGTGGTATCGAACTATTGTAGGTTTGATTTACTAACCTCGAACGTATTTTTGCATTACTGGTTCATCGGTGCGACCAACATAACATGTCTTTCTTATTGTGATGAACTAACTTAGTTTTAATGAAATAGTTTTTTCCGTTAAGAATGAAATGTTATTGAAACTTTCCATATCTTATTCATCATCTGGAAGACTGGAACTATCTCATATCCTCCAATTGTCTTTTTTCATCAATTGCTGGTGTGAGCGTAGCTGATGAATGTGCAATATTTTGACGCTATGATATGAAATATCATGAATGATATTTAGTAGACAAGATCTTTTATCATCGATTTCTGCTTGAATGTTTTCATTTTGGAATTTTAACTTGTACGTATGGTTTCCAACTTTGCAGTGACAAGTAGATAAGGTTGCCGTGTAATTGTGTGATTAATTAACTTTGATCTTCTGTTGTCTAATAGATTTTTGCAAATTTCTGTCAAATTCTCTATTCTTAGTCCCTTCGAGGACATTCGATGAGTCTCTATTTTTATTTTCAGGTATTACTATTCTATTCAGAACATGTCGACTGTCACACTCCCAACATCTTCCCTGATCAAACCTCCTACACTAAGGAGATCCAATGCCCTGGTGCAGAGGCCATCTTCTTTGTGTTCCTTTAGGAGCGTATCCCGATCATTTGGGTTGAAGTCTTCTCAGTTCAAAGTGTCAGCGATGGCTTCTTACAAAGTAAAATTAATTGGACCAGACGGTGAAGAGAATGAGTTTGACGCCCCTGATGATGCTTACATTCTCGACTCAGCTGAGAATGCTGGATTGGACCTACCGTACTCTTGCAGGGCCGGGGCTTGCTCTACTTGTGCCGGTCAAGTAGTGTCCGGGACAGTGGACCAGACAGATGGATCGTTCTTGGACGACAAGCAGATGGAGAAGGGGTATGTCCTGACCTGCGTCGCATATCCACAATCCGATTGCGTGATCCACACACACAAGGAAGGTGATTTGTATTAATTTGTTTGCTTGTGTGTATTTTGTCAGTTGAATCTGATGATTGAACTTCCATCATGCTAAACTTTCCAAGACTAGGCTTAGTTTTTGAGGTTGAATGTCTATTTTGCAAGAATTATGCTCAGTAGAACTGCGAAATTTAAGTTGCTGGTTTAGCGGAAGTCGAAGTATCGAACATCATTCATGAATAATGGGTATATCTGTTTTAGTTTATGGTTAAGGGCCAAGAGAAGGTGTGAAAGTTCAATGCCGACAAATGGACATTAAGTTCCCAGCTCGGCTTCAAGTAAGTAACTATGCATATGCATATGATGGAGTGTCTCATCTTCATTCTTTACTTGGCATAAAAATGAATTTCGTAGGTTATTAAAATGGATGAATATAAATTAGTAAATAATCTGATTGACCTGCCAAAGAAAAGAAAAAAACGTTTTGACGATTTGGAAATAAAAATAGATTTGTGTAGGGTGG

mRNA sequence

ATGTCGACTGTCACACTCCCAACATCTTCCCTGATCAAACCTCCTACACTAAGGAGATCCAATGCCCTGGTGCAGAGGCCATCTTCTTTGTGTTCCTTTAGGAGCGTATCCCGATCATTTGGGTTGAAGTCTTCTCAGTTCAAAGTGTCAGCGATGGCTTCTTACAAAGTAAAATTAATTGGACCAGACGGTGAAGAGAATGAGTTTGACGCCCCTGATGATGCTTACATTCTCGACTCAGCTGAGAATGCTGGATTGGACCTACCGTACTCTTGCAGGGCCGGGGCTTGCTCTACTTGTGCCGGTCAAGTAGTGTCCGGGACAGTGGACCAGACAGATGGATCGTTCTTGGACGACAAGCAGATGGAGAAGGGGTATGTCCTGACCTGCGTCGCATATCCACAATCCGATTGCGTGATCCACACACACAAGGAAGGTGATTTGTATTAA

Coding sequence (CDS)

ATGTCGACTGTCACACTCCCAACATCTTCCCTGATCAAACCTCCTACACTAAGGAGATCCAATGCCCTGGTGCAGAGGCCATCTTCTTTGTGTTCCTTTAGGAGCGTATCCCGATCATTTGGGTTGAAGTCTTCTCAGTTCAAAGTGTCAGCGATGGCTTCTTACAAAGTAAAATTAATTGGACCAGACGGTGAAGAGAATGAGTTTGACGCCCCTGATGATGCTTACATTCTCGACTCAGCTGAGAATGCTGGATTGGACCTACCGTACTCTTGCAGGGCCGGGGCTTGCTCTACTTGTGCCGGTCAAGTAGTGTCCGGGACAGTGGACCAGACAGATGGATCGTTCTTGGACGACAAGCAGATGGAGAAGGGGTATGTCCTGACCTGCGTCGCATATCCACAATCCGATTGCGTGATCCACACACACAAGGAAGGTGATTTGTATTAA

Homology

[Close]

BLAST of CSPI06G03960 vs. Swiss-Prot
Match: FER3_MAIZE (Ferredoxin-3, chloroplastic OS=Zea mays GN=FDX3 PE=2 SV=1)

HSP 1 Score: 144.1 bits (362), Expect = 1.1e-33
Identity = 79/128 (61.72%), Postives = 97/128 (75.78%), Query Frame = 1


Query: 1   MSTVTLPTSSLI--KPPTLRRSNALVQRPSSLCSFRSVSRSFGLKSSQ-FKVSAMASYKV 60
           MST T  TS  +     T + S   V+ PSSL  F  V++   LK+S+   VSAMA YKV
Sbjct: 1   MSTSTFATSCTLLGNVRTTQASQTAVKSPSSLSFFSQVTKVPSLKTSKKLDVSAMAVYKV 60

Query: 61  KLIGPDGEENEFDAPDDAYILDSAENAGLDLPYSCRAGACSTCAGQVVSGTVDQTDGSFL 120
           KL+GP+GEE+EFDAPDDAYILD+AE AG++LPYSCRAGACSTCAG++ SG+VDQ+DGSFL
Sbjct: 61  KLVGPEGEEHEFDAPDDAYILDAAETAGVELPYSCRAGACSTCAGKIESGSVDQSDGSFL 120

Query: 121 DDKQMEKG 126
           DD Q E+G
Sbjct: 121 DDGQQEEG 128

[Close]

BLAST of CSPI06G03960 vs. Swiss-Prot
Match: FER3_ARATH (Ferredoxin-3, chloroplastic OS=Arabidopsis thaliana GN=FD3 PE=1 SV=1)

HSP 1 Score: 132.9 bits (333), Expect = 2.5e-30
Identity = 75/131 (57.25%), Postives = 95/131 (72.52%), Query Frame = 1


Query: 1   MSTVTLPTSSLIKPPTLRRS-NALVQRPS---SLCSFRSVSRSFGLKSSQFKVSAMAS-- 60
           M+TV + ++S+ K     ++ N L+   S   S+ S + VSRSFGLK S     A  S  
Sbjct: 1   MATVRISSTSMTKAVLRSQTTNKLITNKSYNLSVGSTKRVSRSFGLKCSANSGGATMSAV 60

Query: 61  YKVKLIGPDGEENEFDAPDDAYILDSAENAGLDLPYSCRAGACSTCAGQVVSGTVDQTDG 120
           YKVKL+GPDG+E+EF+  DD YILD+AE AG+DLPYSCRAGACSTCAGQ+VSG VDQ+DG
Sbjct: 61  YKVKLLGPDGQEDEFEVQDDQYILDAAEEAGVDLPYSCRAGACSTCAGQIVSGNVDQSDG 120

Query: 121 SFLDDKQMEKG 126
           SFL+D  +EKG
Sbjct: 121 SFLEDSHLEKG 131

[Close]

BLAST of CSPI06G03960 vs. Swiss-Prot
Match: FER1_RAPSA (Ferredoxin, root R-B1 OS=Raphanus sativus PE=1 SV=1)

HSP 1 Score: 123.2 bits (308), Expect = 2.0e-27
Identity = 56/73 (76.71%), Postives = 63/73 (86.30%), Query Frame = 1


Query: 53  ASYKVKLIGPDGEENEFDAPDDAYILDSAENAGLDLPYSCRAGACSTCAGQVVSGTVDQT 112
           A YKVKLIGPDG+ENEFD PDD YILD+AE AG+DLPYSCRAGACSTCAG++  G VDQ+
Sbjct: 2   AVYKVKLIGPDGQENEFDVPDDQYILDAAEEAGVDLPYSCRAGACSTCAGKIEKGQVDQS 61

Query: 113 DGSFLDDKQMEKG 126
           DGSFL+D   EKG
Sbjct: 62  DGSFLEDHHFEKG 74

[Close]

BLAST of CSPI06G03960 vs. Swiss-Prot
Match: FER2_RAPSA (Ferredoxin, root R-B2 OS=Raphanus sativus PE=1 SV=1)

HSP 1 Score: 119.0 bits (297), Expect = 3.7e-26
Identity = 54/73 (73.97%), Postives = 63/73 (86.30%), Query Frame = 1


Query: 53  ASYKVKLIGPDGEENEFDAPDDAYILDSAENAGLDLPYSCRAGACSTCAGQVVSGTVDQT 112
           A YKVKLIGP+GEENEF+  DD +ILD+AE AG+DLPYSCRAGACSTCAGQ+V G VDQ+
Sbjct: 2   AVYKVKLIGPEGEENEFEVQDDQFILDAAEEAGVDLPYSCRAGACSTCAGQIVKGQVDQS 61

Query: 113 DGSFLDDKQMEKG 126
           +GSFL+D   EKG
Sbjct: 62  EGSFLEDDHFEKG 74

[Close]

BLAST of CSPI06G03960 vs. Swiss-Prot
Match: FER_CAPAN (Ferredoxin, chloroplastic OS=Capsicum annuum GN=AP1 PE=1 SV=1)

HSP 1 Score: 118.6 bits (296), Expect = 4.8e-26
Identity = 60/87 (68.97%), Postives = 70/87 (80.46%), Query Frame = 1


Query: 40  FGLKSSQF-KVSAMASYKVKLIGPDGEENEFDAPDDAYILDSAENAGLDLPYSCRAGACS 99
           FGLKS+   KV+ MASYKVKLI PDG   EFD PD+ YILD AE AG DLPYSCRAG+CS
Sbjct: 34  FGLKSANGGKVTCMASYKVKLITPDGPI-EFDCPDNVYILDQAEEAGHDLPYSCRAGSCS 93

Query: 100 TCAGQVVSGTVDQTDGSFLDDKQMEKG 126
           +CAG++  G VDQTDG+FLDD Q+E+G
Sbjct: 94  SCAGKIAGGAVDQTDGNFLDDDQLEEG 119

[Close]

BLAST of CSPI06G03960 vs. TrEMBL
Match: A0A0A0KNA3_CUCSA (Uncharacterized protein OS=Cucumis sativus GN=Csa_5G413260 PE=4 SV=1)

HSP 1 Score: 243.4 bits (620), Expect = 1.4e-61
Identity = 125/125 (100.00%), Postives = 125/125 (100.00%), Query Frame = 1


Query: 1   MSTVTLPTSSLIKPPTLRRSNALVQRPSSLCSFRSVSRSFGLKSSQFKVSAMASYKVKLI 60
           MSTVTLPTSSLIKPPTLRRSNALVQRPSSLCSFRSVSRSFGLKSSQFKVSAMASYKVKLI
Sbjct: 1   MSTVTLPTSSLIKPPTLRRSNALVQRPSSLCSFRSVSRSFGLKSSQFKVSAMASYKVKLI 60

Query: 61  GPDGEENEFDAPDDAYILDSAENAGLDLPYSCRAGACSTCAGQVVSGTVDQTDGSFLDDK 120
           GPDGEENEFDAPDDAYILDSAENAGLDLPYSCRAGACSTCAGQVVSGTVDQTDGSFLDDK
Sbjct: 61  GPDGEENEFDAPDDAYILDSAENAGLDLPYSCRAGACSTCAGQVVSGTVDQTDGSFLDDK 120

Query: 121 QMEKG 126
           QMEKG
Sbjct: 121 QMEKG 125

[Close]

BLAST of CSPI06G03960 vs. TrEMBL
Match: D7SSE8_VITVI (Putative uncharacterized protein OS=Vitis vinifera GN=VIT_13s0147g00110 PE=4 SV=1)

HSP 1 Score: 183.3 bits (464), Expect = 1.8e-43
Identity = 93/125 (74.40%), Postives = 108/125 (86.40%), Query Frame = 1


Query: 1   MSTVTLPTSSLIKPPTLRRSNALVQRPSSLCSFRSVSRSFGLKSSQFKVSAMASYKVKLI 60
           MSTV+LPT  L K   L++S AL++ P SL S RS S++FGLKSS F+VSAMA YKVKLI
Sbjct: 20  MSTVSLPTPFLFKSAPLKKSCALIRSPGSLGSVRSTSKAFGLKSSSFRVSAMAVYKVKLI 79

Query: 61  GPDGEENEFDAPDDAYILDSAENAGLDLPYSCRAGACSTCAGQVVSGTVDQTDGSFLDDK 120
           GPDGEE+EFDAPDD YILDSAENAGL+LPYSCRAGACSTCAGQ+V G+VDQ+DGSFLD+K
Sbjct: 80  GPDGEESEFDAPDDVYILDSAENAGLELPYSCRAGACSTCAGQMVLGSVDQSDGSFLDEK 139

Query: 121 QMEKG 126
           QM+ G
Sbjct: 140 QMDNG 144

[Close]

BLAST of CSPI06G03960 vs. TrEMBL
Match: A0A067DNH4_CITSI (Uncharacterized protein OS=Citrus sinensis GN=CISIN_1g031979mg PE=4 SV=1)

HSP 1 Score: 180.3 bits (456), Expect = 1.5e-42
Identity = 92/125 (73.60%), Postives = 107/125 (85.60%), Query Frame = 1


Query: 1   MSTVTLPTSSLIKPPTLRRSNALVQRPSSLCSFRSVSRSFGLKSSQFKVSAMASYKVKLI 60
           MSTV LPTS L +     +  +LV+ P+SL S RSVS++FGLK S FK SAMA YKVKLI
Sbjct: 1   MSTVRLPTSCLFQAAPRSKKFSLVKSPASLGSTRSVSKAFGLKCSSFKASAMAVYKVKLI 60

Query: 61  GPDGEENEFDAPDDAYILDSAENAGLDLPYSCRAGACSTCAGQVVSGTVDQTDGSFLDDK 120
           GP+GEENEFDAPDDAYI+DSAE+ G++LPYSCRAGACSTCAGQ+VSG+VDQ+DGSFLDDK
Sbjct: 61  GPNGEENEFDAPDDAYIIDSAEDTGMELPYSCRAGACSTCAGQMVSGSVDQSDGSFLDDK 120

Query: 121 QMEKG 126
           QMEKG
Sbjct: 121 QMEKG 125

[Close]

BLAST of CSPI06G03960 vs. TrEMBL
Match: V4U9R4_9ROSI (Uncharacterized protein OS=Citrus clementina GN=CICLE_v10016676mg PE=4 SV=1)

HSP 1 Score: 179.9 bits (455), Expect = 2.0e-42
Identity = 92/125 (73.60%), Postives = 106/125 (84.80%), Query Frame = 1


Query: 1   MSTVTLPTSSLIKPPTLRRSNALVQRPSSLCSFRSVSRSFGLKSSQFKVSAMASYKVKLI 60
           MSTV LPTS L +     +  +LV+ P SL S RSVS++FGLK S FK SAMA YKVKLI
Sbjct: 65  MSTVRLPTSCLFQAAPRSKKFSLVKSPGSLGSTRSVSKAFGLKCSSFKASAMAVYKVKLI 124

Query: 61  GPDGEENEFDAPDDAYILDSAENAGLDLPYSCRAGACSTCAGQVVSGTVDQTDGSFLDDK 120
           GP+GEENEFDAPDDAYI+DSAE+ G++LPYSCRAGACSTCAGQ+VSG+VDQ+DGSFLDDK
Sbjct: 125 GPNGEENEFDAPDDAYIIDSAEDTGMELPYSCRAGACSTCAGQMVSGSVDQSDGSFLDDK 184

Query: 121 QMEKG 126
           QMEKG
Sbjct: 185 QMEKG 189

[Close]

BLAST of CSPI06G03960 vs. TrEMBL
Match: V4TZC2_9ROSI (Uncharacterized protein OS=Citrus clementina GN=CICLE_v10016676mg PE=4 SV=1)

HSP 1 Score: 179.9 bits (455), Expect = 2.0e-42
Identity = 92/125 (73.60%), Postives = 106/125 (84.80%), Query Frame = 1


Query: 1   MSTVTLPTSSLIKPPTLRRSNALVQRPSSLCSFRSVSRSFGLKSSQFKVSAMASYKVKLI 60
           MSTV LPTS L +     +  +LV+ P SL S RSVS++FGLK S FK SAMA YKVKLI
Sbjct: 1   MSTVRLPTSCLFQAAPRSKKFSLVKSPGSLGSTRSVSKAFGLKCSSFKASAMAVYKVKLI 60

Query: 61  GPDGEENEFDAPDDAYILDSAENAGLDLPYSCRAGACSTCAGQVVSGTVDQTDGSFLDDK 120
           GP+GEENEFDAPDDAYI+DSAE+ G++LPYSCRAGACSTCAGQ+VSG+VDQ+DGSFLDDK
Sbjct: 61  GPNGEENEFDAPDDAYIIDSAEDTGMELPYSCRAGACSTCAGQMVSGSVDQSDGSFLDDK 120

Query: 121 QMEKG 126
           QMEKG
Sbjct: 121 QMEKG 125

[Close]

BLAST of CSPI06G03960 vs. TAIR10
Match: AT2G27510.1 (AT2G27510.1 ferredoxin 3)

HSP 1 Score: 132.9 bits (333), Expect = 1.4e-31
Identity = 75/131 (57.25%), Postives = 95/131 (72.52%), Query Frame = 1


Query: 1   MSTVTLPTSSLIKPPTLRRS-NALVQRPS---SLCSFRSVSRSFGLKSSQFKVSAMAS-- 60
           M+TV + ++S+ K     ++ N L+   S   S+ S + VSRSFGLK S     A  S  
Sbjct: 1   MATVRISSTSMTKAVLRSQTTNKLITNKSYNLSVGSTKRVSRSFGLKCSANSGGATMSAV 60

Query: 61  YKVKLIGPDGEENEFDAPDDAYILDSAENAGLDLPYSCRAGACSTCAGQVVSGTVDQTDG 120
           YKVKL+GPDG+E+EF+  DD YILD+AE AG+DLPYSCRAGACSTCAGQ+VSG VDQ+DG
Sbjct: 61  YKVKLLGPDGQEDEFEVQDDQYILDAAEEAGVDLPYSCRAGACSTCAGQIVSGNVDQSDG 120

Query: 121 SFLDDKQMEKG 126
           SFL+D  +EKG
Sbjct: 121 SFLEDSHLEKG 131

[Close]

BLAST of CSPI06G03960 vs. TAIR10
Match: AT1G10960.1 (AT1G10960.1 ferredoxin 1)

HSP 1 Score: 117.1 bits (292), Expect = 7.9e-27
Identity = 68/126 (53.97%), Postives = 90/126 (71.43%), Query Frame = 1


Query: 5   TLPTSSLIKPPTLRRSNALVQRPSSLCS--FRSVSRSFGLKSSQFK---VSAMASYKVKL 64
           T  +S+++    LRR     Q P SL S  F +    FGLKSS  +   V+AMA+YKVK 
Sbjct: 4   TALSSAIVSTSFLRRQ----QTPISLRSLPFANTQSLFGLKSSTARGGRVTAMATYKVKF 63

Query: 65  IGPDGEENEFDAPDDAYILDSAENAGLDLPYSCRAGACSTCAGQVVSGTVDQTDGSFLDD 124
           I P+GE+ E +  +D Y+LD+AE AGLDLPYSCRAG+CS+CAG+VVSG++DQ+D SFLDD
Sbjct: 64  ITPEGEQ-EVECEEDVYVLDAAEEAGLDLPYSCRAGSCSSCAGKVVSGSIDQSDQSFLDD 123

Query: 125 KQMEKG 126
           +QM +G
Sbjct: 124 EQMSEG 124

[Close]

BLAST of CSPI06G03960 vs. TAIR10
Match: AT1G60950.1 (AT1G60950.1 2Fe-2S ferredoxin-like superfamily protein)

HSP 1 Score: 111.7 bits (278), Expect = 3.3e-25
Identity = 67/126 (53.17%), Postives = 89/126 (70.63%), Query Frame = 1


Query: 5   TLPTSSLIKPPTLRRSNALVQRPSSLCSFRSVSRS--FGLKSSQFK---VSAMASYKVKL 64
           T  +S+++    +RRS A    P SL S  S +    FGLKS   +   V+AMA+YKVK 
Sbjct: 4   TALSSAIVGTSFIRRSPA----PISLRSLPSANTQSLFGLKSGTARGGRVTAMATYKVKF 63

Query: 65  IGPDGEENEFDAPDDAYILDSAENAGLDLPYSCRAGACSTCAGQVVSGTVDQTDGSFLDD 124
           I P+G E E +  DD Y+LD+AE AG+DLPYSCRAG+CS+CAG+VVSG+VDQ+D SFLDD
Sbjct: 64  ITPEG-ELEVECDDDVYVLDAAEEAGIDLPYSCRAGSCSSCAGKVVSGSVDQSDQSFLDD 123

Query: 125 KQMEKG 126
           +Q+ +G
Sbjct: 124 EQIGEG 124

[Close]

BLAST of CSPI06G03960 vs. TAIR10
Match: AT5G10000.1 (AT5G10000.1 ferredoxin 4)

HSP 1 Score: 102.8 bits (255), Expect = 1.5e-22
Identity = 60/123 (48.78%), Postives = 83/123 (67.48%), Query Frame = 1


Query: 6   LPTSSLIKPPTLRRSNALVQRPSSLCSFRSVSRSFGLKSSQF---KVSAMASYKVKLIGP 65
           L +S +IK P + R   +    + L +  + +  FGL SS+    KV A  S KVKLI P
Sbjct: 5   LYSSYIIKIPVISR---ISPSQAQLTTRLNNTTYFGLSSSRGNFGKVFAKESRKVKLISP 64

Query: 66  DGEENEFDAPDDAYILDSAENAGLDLPYSCRAGACSTCAGQVVSGTVDQTDGSFLDDKQM 125
           +GEE E +  +D  IL+SAENAGL+LPYSCR+G C TC G++VSG VDQ+ GSFL+++Q+
Sbjct: 65  EGEEQEIEGNEDCCILESAENAGLELPYSCRSGTCGTCCGKLVSGKVDQSLGSFLEEEQI 124

[Close]

BLAST of CSPI06G03960 vs. TAIR10
Match: AT4G14890.1 (AT4G14890.1 2Fe-2S ferredoxin-like superfamily protein)

HSP 1 Score: 58.5 bits (140), Expect = 3.3e-09
Identity = 40/124 (32.26%), Postives = 62/124 (50.00%), Query Frame = 1


Query: 2   STVTLPTSSLIKPPTLRRSNALVQRPSSLCSFRSVSRSFGLKSSQFKVSAMASYKVKLIG 61
           ST++LP   L    +    NA +   ++  +F +  R               +YKV ++ 
Sbjct: 11  STISLPKPYLSNSFSFPLRNATLSTTTNRRNFLTTGRIIA-----------RAYKV-VVE 70

Query: 62  PDGEENEFDAPDDAYILDSAENAGLDLPYSCRAGACSTCAGQVVSGTVDQTDGSFLDDKQ 121
            DG+  E +   D  IL  A ++GLD+PY C  G C TC  ++V+GTVDQ+ G  L D  
Sbjct: 71  HDGKTTELEVEPDETILSKALDSGLDVPYDCNLGVCMTCPAKLVTGTVDQS-GGMLSDDV 121

Query: 122 MEKG 126
           +E+G
Sbjct: 131 VERG 121

[Close]

BLAST of CSPI06G03960 vs. NCBI nr
Match: gi|778702570|ref|XP_011655228.1| (PREDICTED: ferredoxin, root R-B1-like [Cucumis sativus])

HSP 1 Score: 243.4 bits (620), Expect = 2.1e-61
Identity = 125/125 (100.00%), Postives = 125/125 (100.00%), Query Frame = 1


Query: 1   MSTVTLPTSSLIKPPTLRRSNALVQRPSSLCSFRSVSRSFGLKSSQFKVSAMASYKVKLI 60
           MSTVTLPTSSLIKPPTLRRSNALVQRPSSLCSFRSVSRSFGLKSSQFKVSAMASYKVKLI
Sbjct: 1   MSTVTLPTSSLIKPPTLRRSNALVQRPSSLCSFRSVSRSFGLKSSQFKVSAMASYKVKLI 60

Query: 61  GPDGEENEFDAPDDAYILDSAENAGLDLPYSCRAGACSTCAGQVVSGTVDQTDGSFLDDK 120
           GPDGEENEFDAPDDAYILDSAENAGLDLPYSCRAGACSTCAGQVVSGTVDQTDGSFLDDK
Sbjct: 61  GPDGEENEFDAPDDAYILDSAENAGLDLPYSCRAGACSTCAGQVVSGTVDQTDGSFLDDK 120

Query: 121 QMEKG 126
           QMEKG
Sbjct: 121 QMEKG 125

[Close]

BLAST of CSPI06G03960 vs. NCBI nr
Match: gi|659113488|ref|XP_008456600.1| (PREDICTED: ferredoxin, root R-B2-like [Cucumis melo])

HSP 1 Score: 226.5 bits (576), Expect = 2.6e-56
Identity = 117/125 (93.60%), Postives = 121/125 (96.80%), Query Frame = 1


Query: 1   MSTVTLPTSSLIKPPTLRRSNALVQRPSSLCSFRSVSRSFGLKSSQFKVSAMASYKVKLI 60
           MSTV LPTS LIK PTLRRSNALVQRPSSLCSFRSVS+SFGLKSSQ KVSAMASYKVKLI
Sbjct: 1   MSTVILPTSCLIKTPTLRRSNALVQRPSSLCSFRSVSQSFGLKSSQSKVSAMASYKVKLI 60

Query: 61  GPDGEENEFDAPDDAYILDSAENAGLDLPYSCRAGACSTCAGQVVSGTVDQTDGSFLDDK 120
           GP+GEENEF+APDDAYILDSAENAGLDLPYSCRAGACSTCAGQVVSGTVDQTDGSFLDDK
Sbjct: 61  GPNGEENEFEAPDDAYILDSAENAGLDLPYSCRAGACSTCAGQVVSGTVDQTDGSFLDDK 120

Query: 121 QMEKG 126
           QME+G
Sbjct: 121 QMEQG 125

[Close]

BLAST of CSPI06G03960 vs. NCBI nr
Match: gi|296080982|emb|CBI18580.3| (unnamed protein product [Vitis vinifera])

HSP 1 Score: 183.3 bits (464), Expect = 2.6e-43
Identity = 93/125 (74.40%), Postives = 108/125 (86.40%), Query Frame = 1


Query: 1   MSTVTLPTSSLIKPPTLRRSNALVQRPSSLCSFRSVSRSFGLKSSQFKVSAMASYKVKLI 60
           MSTV+LPT  L K   L++S AL++ P SL S RS S++FGLKSS F+VSAMA YKVKLI
Sbjct: 20  MSTVSLPTPFLFKSAPLKKSCALIRSPGSLGSVRSTSKAFGLKSSSFRVSAMAVYKVKLI 79

Query: 61  GPDGEENEFDAPDDAYILDSAENAGLDLPYSCRAGACSTCAGQVVSGTVDQTDGSFLDDK 120
           GPDGEE+EFDAPDD YILDSAENAGL+LPYSCRAGACSTCAGQ+V G+VDQ+DGSFLD+K
Sbjct: 80  GPDGEESEFDAPDDVYILDSAENAGLELPYSCRAGACSTCAGQMVLGSVDQSDGSFLDEK 139

Query: 121 QMEKG 126
           QM+ G
Sbjct: 140 QMDNG 144

[Close]

BLAST of CSPI06G03960 vs. NCBI nr
Match: gi|731413612|ref|XP_010658808.1| (PREDICTED: ferredoxin, root R-B1-like [Vitis vinifera])

HSP 1 Score: 183.3 bits (464), Expect = 2.6e-43
Identity = 93/125 (74.40%), Postives = 108/125 (86.40%), Query Frame = 1


Query: 1   MSTVTLPTSSLIKPPTLRRSNALVQRPSSLCSFRSVSRSFGLKSSQFKVSAMASYKVKLI 60
           MSTV+LPT  L K   L++S AL++ P SL S RS S++FGLKSS F+VSAMA YKVKLI
Sbjct: 1   MSTVSLPTPFLFKSAPLKKSCALIRSPGSLGSVRSTSKAFGLKSSSFRVSAMAVYKVKLI 60

Query: 61  GPDGEENEFDAPDDAYILDSAENAGLDLPYSCRAGACSTCAGQVVSGTVDQTDGSFLDDK 120
           GPDGEE+EFDAPDD YILDSAENAGL+LPYSCRAGACSTCAGQ+V G+VDQ+DGSFLD+K
Sbjct: 61  GPDGEESEFDAPDDVYILDSAENAGLELPYSCRAGACSTCAGQMVLGSVDQSDGSFLDEK 120

Query: 121 QMEKG 126
           QM+ G
Sbjct: 121 QMDNG 125

[Close]

BLAST of CSPI06G03960 vs. NCBI nr
Match: gi|641825123|gb|KDO44408.1| (hypothetical protein CISIN_1g031979mg [Citrus sinensis])

HSP 1 Score: 180.3 bits (456), Expect = 2.2e-42
Identity = 92/125 (73.60%), Postives = 107/125 (85.60%), Query Frame = 1


Query: 1   MSTVTLPTSSLIKPPTLRRSNALVQRPSSLCSFRSVSRSFGLKSSQFKVSAMASYKVKLI 60
           MSTV LPTS L +     +  +LV+ P+SL S RSVS++FGLK S FK SAMA YKVKLI
Sbjct: 1   MSTVRLPTSCLFQAAPRSKKFSLVKSPASLGSTRSVSKAFGLKCSSFKASAMAVYKVKLI 60

Query: 61  GPDGEENEFDAPDDAYILDSAENAGLDLPYSCRAGACSTCAGQVVSGTVDQTDGSFLDDK 120
           GP+GEENEFDAPDDAYI+DSAE+ G++LPYSCRAGACSTCAGQ+VSG+VDQ+DGSFLDDK
Sbjct: 61  GPNGEENEFDAPDDAYIIDSAEDTGMELPYSCRAGACSTCAGQMVSGSVDQSDGSFLDDK 120

Query: 121 QMEKG 126
           QMEKG
Sbjct: 121 QMEKG 125

The following BLAST results are available for this feature:

BLAST of CSPI06G03960 vs. Swiss-Prot


Match Name	E-value	Identity	Description
FER3_MAIZE	1.1e-33	61.72	Ferredoxin-3, chloroplastic OS=Zea mays GN=FDX3 PE=2 SV=1	[more]
FER3_ARATH	2.5e-30	57.25	Ferredoxin-3, chloroplastic OS=Arabidopsis thaliana GN=FD3 PE=1 SV=1	[more]
FER1_RAPSA	2.0e-27	76.71	Ferredoxin, root R-B1 OS=Raphanus sativus PE=1 SV=1	[more]
FER2_RAPSA	3.7e-26	73.97	Ferredoxin, root R-B2 OS=Raphanus sativus PE=1 SV=1	[more]
FER_CAPAN	4.8e-26	68.97	Ferredoxin, chloroplastic OS=Capsicum annuum GN=AP1 PE=1 SV=1	[more]

BLAST of CSPI06G03960 vs. TrEMBL


Match Name	E-value	Identity	Description
A0A0A0KNA3_CUCSA	1.4e-61	100.00	Uncharacterized protein OS=Cucumis sativus GN=Csa_5G413260 PE=4 SV=1	[more]
D7SSE8_VITVI	1.8e-43	74.40	Putative uncharacterized protein OS=Vitis vinifera GN=VIT_13s0147g00110 PE=4 SV=...	[more]
A0A067DNH4_CITSI	1.5e-42	73.60	Uncharacterized protein OS=Citrus sinensis GN=CISIN_1g031979mg PE=4 SV=1	[more]
V4U9R4_9ROSI	2.0e-42	73.60	Uncharacterized protein OS=Citrus clementina GN=CICLE_v10016676mg PE=4 SV=1	[more]
V4TZC2_9ROSI	2.0e-42	73.60	Uncharacterized protein OS=Citrus clementina GN=CICLE_v10016676mg PE=4 SV=1	[more]

BLAST of CSPI06G03960 vs. TAIR10


Match Name	E-value	Identity	Description
AT2G27510.1	1.4e-31	57.25	ferredoxin 3	[more]
AT1G10960.1	7.9e-27	53.97	ferredoxin 1	[more]
AT1G60950.1	3.3e-25	53.17	2Fe-2S ferredoxin-like superfamily protein	[more]
AT5G10000.1	1.5e-22	48.78	ferredoxin 4	[more]
AT4G14890.1	3.3e-09	32.26	2Fe-2S ferredoxin-like superfamily protein	[more]

BLAST of CSPI06G03960 vs. NCBI nr


Match Name	E-value	Identity	Description
gi\|778702570\|ref\|XP_011655228.1\|	2.1e-61	100.00	PREDICTED: ferredoxin, root R-B1-like [Cucumis sativus]	[more]
gi\|659113488\|ref\|XP_008456600.1\|	2.6e-56	93.60	PREDICTED: ferredoxin, root R-B2-like [Cucumis melo]	[more]
gi\|296080982\|emb\|CBI18580.3\|	2.6e-43	74.40	unnamed protein product [Vitis vinifera]	[more]
gi\|731413612\|ref\|XP_010658808.1\|	2.6e-43	74.40	PREDICTED: ferredoxin, root R-B1-like [Vitis vinifera]	[more]
gi\|641825123\|gb\|KDO44408.1\|	2.2e-42	73.60	hypothetical protein CISIN_1g031979mg [Citrus sinensis]	[more]

Annotated Terms

The following terms have been associated with this gene:

Vocabulary: **INTERPRO**
Term	Definition
IPR001041	2Fe-2S_ferredoxin-type
IPR006058	2Fe2S_fd_BS
IPR010241	Fd_pln
IPR012675	Beta-grasp_dom_sf
IPR001041	2Fe-2S_ferredoxin-type
IPR006058	2Fe2S_fd_BS
IPR010241	Fd_pln
IPR012675	Beta-grasp_dom_sf

Vocabulary: **Molecular Function**
Term	Definition
GO:0009055	electron carrier activity
GO:0051536	iron-sulfur cluster binding
GO:0051537	2 iron, 2 sulfur cluster binding
GO:0009055	electron carrier activity
GO:0051536	iron-sulfur cluster binding
GO:0051537	2 iron, 2 sulfur cluster binding

Vocabulary: **Biological Process**
Term	Definition
GO:0022900	electron transport chain
GO:0022900	electron transport chain

GO Annotation

GO Assignments

This gene is annotated with the following GO terms.

Category	Term Accession	Term Name
biological_process	GO:0022900	electron transport chain
cellular_component	GO:0005575	cellular_component
cellular_component	GO:0009507	chloroplast
molecular_function	GO:0051537	2 iron, 2 sulfur cluster binding
molecular_function	GO:0009055	electron carrier activity
molecular_function	GO:0046872	metal ion binding
molecular_function	GO:0051536	iron-sulfur cluster binding

Relationships

The following mRNA feature(s) are a part of this gene:


Feature Name	Unique Name	Type
CSPI06G03960.2	CSPI06G03960.2	mRNA
CSPI06G03960.1	CSPI06G03960.1	mRNA

InterPro

Analysis Name: InterPro Annotations of cucumber (PI183967)
Date Performed: 2017-01-17


IPR Term	IPR Description	Source	Source Term	Source Description	Alignment
IPR001041	2Fe-2S ferredoxin-type iron-sulfur binding domain	PFAM	PF00111	Fer2	coord: 62..135 score: 4.4
IPR001041	2Fe-2S ferredoxin-type iron-sulfur binding domain	PROFILE	PS51085	2FE2S_FER_2	coord: 55..146 score: 12
IPR001041	2Fe-2S ferredoxin-type iron-sulfur binding domain	unknown	SSF54292	2Fe-2S ferredoxin-like	coord: 38..145 score: 8.94
IPR006058	2Fe-2S ferredoxin, iron-sulphur binding site	PROSITE	PS00197	2FE2S_FER_1	coord: 92..100 scor
IPR010241	Ferredoxin [2Fe-2S], plant	TIGRFAMs	TIGR02008	TIGR02008	coord: 53..149 score: 4.3
IPR012675	Beta-grasp domain	GENE3D	G3DSA:3.10.20.30		coord: 52..149 score: 5.3
None	No IPR available	PANTHER	PTHR19370	NADH-CYTOCHROME B5 REDUCTASE	coord: 1..149 score: 1.3
None	No IPR available	PANTHER	PTHR19370:SF124	FERREDOXIN-4, CHLOROPLASTIC-RELATED	coord: 1..149 score: 1.3

Synteny

The following gene(s) are orthologous to this gene:


Gene	Orthologue	Organism	Block
CSPI06G03960	Cla013694	Watermelon (97103) v1	cpiwmB472
CSPI06G03960	Csa6G045160	Cucumber (Chinese Long) v2	cpicuB314
CSPI06G03960	MELO3C019895	Melon (DHL92) v3.5.1	cpimeB473
CSPI06G03960	ClCG08G008270	Watermelon (Charleston Gray)	cpiwcgB523
CSPI06G03960	Lsi08G006470	Bottle gourd (USVL1VR-Ls)	cpilsiB487
CSPI06G03960	MELO3C019895.2	Melon (DHL92) v3.6.1	cpimedB465
CSPI06G03960	CsaV3_6G004230	Cucumber (Chinese Long) v3	cpicucB364
CSPI06G03960	Bhi04G001324	Wax gourd	cpiwgoB593
CSPI06G03960	Cucsa.364660	Cucumber (Gy14) v1	cgycpiB540
CSPI06G03960	CmaCh04G025190	Cucurbita maxima (Rimu)	cmacpiB778
CSPI06G03960	CmaCh15G005210	Cucurbita maxima (Rimu)	cmacpiB315
CSPI06G03960	CmoCh04G026380	Cucurbita moschata (Rifu)	cmocpiB769
CSPI06G03960	Cp4.1LG01g25010	Cucurbita pepo (Zucchini)	cpecpiB460
CSPI06G03960	CsGy6G003930	Cucumber (Gy14) v2	cgybcpiB288
CSPI06G03960	Carg04621	Silver-seed gourd	carcpiB0725
CSPI06G03960	Carg01678	Silver-seed gourd	carcpiB0870

The following gene(s) are paralogous to this gene:

None

The following block(s) are covering this gene:


Gene	Organism	Block
CSPI06G03960	Cucurbita moschata (Rifu)	cmocpiB306
CSPI06G03960	Cucurbita pepo (Zucchini)	cpecpiB198
CSPI06G03960	Watermelon (97103) v2	cpiwmbB514