CmaCh15G005210.1 (mRNA) Cucurbita maxima (Rimu) | Cucurbit Genomics Database (CuGenDB)

Overview


Name	CmaCh15G005210.1
Type	mRNA
Organism	Cucurbita maxima (Cucurbita maxima (Rimu))
Description	Xylene monooxygenase electron transfer component
Location	Cma_Chr15 : 2406548 .. 2407000 (+)
Sequence length	453

Genome Viewer

Sequences

The following sequences are available for this feature:

Gene sequence (with intron)

Legend: exonCDS

Hold the cursor over a type above to highlight its positions in the sequence below.

ATGTCGGCTATCAATCTTCCAACATCTTGCCTGATCAAAAGTGCTACACCAAGGAGATCCTGTGCCCTAGTGCAGAGGCCATCTTCTTTGGGTTCTTTTAGGAGTGTATCCCGGGCATTTGGATTGAAGTCTTCTTCATTCAAAGTGACAGCAATGGCTACTACTTACAAAGTGAAATTGATTGGACCAAACGGTGAAGAGAATGAGTTTGAGGCCCCTGATGATGCTTACATTCTGGACTCAGCTGAGGATGCTGGATTGGATCTACCTTACTCTTGCAGGGCTGGAGCTTGCTCTACTTGCGCCGGTCAAGTTGTTTCTGGGACAGTGGACCAATCAGATGGATCGTTCTTGGACGACAATCAAATGGAGAAGGGTTATGTCCTGACCTGCGTTGCATACCCACAATCCGACTGTGTCATCCACACACACAAGGAAGGTGATTTGTACTGA

mRNA sequence

ATGTCGGCTATCAATCTTCCAACATCTTGCCTGATCAAAAGTGCTACACCAAGGAGATCCTGTGCCCTAGTGCAGAGGCCATCTTCTTTGGGTTCTTTTAGGAGTGTATCCCGGGCATTTGGATTGAAGTCTTCTTCATTCAAAGTGACAGCAATGGCTACTACTTACAAAGTGAAATTGATTGGACCAAACGGTGAAGAGAATGAGTTTGAGGCCCCTGATGATGCTTACATTCTGGACTCAGCTGAGGATGCTGGATTGGATCTACCTTACTCTTGCAGGGCTGGAGCTTGCTCTACTTGCGCCGGTCAAGTTGTTTCTGGGACAGTGGACCAATCAGATGGATCGTTCTTGGACGACAATCAAATGGAGAAGGGTTATGTCCTGACCTGCGTTGCATACCCACAATCCGACTGTGTCATCCACACACACAAGGAAGGTGATTTGTACTGA

Coding sequence (CDS)

ATGTCGGCTATCAATCTTCCAACATCTTGCCTGATCAAAAGTGCTACACCAAGGAGATCCTGTGCCCTAGTGCAGAGGCCATCTTCTTTGGGTTCTTTTAGGAGTGTATCCCGGGCATTTGGATTGAAGTCTTCTTCATTCAAAGTGACAGCAATGGCTACTACTTACAAAGTGAAATTGATTGGACCAAACGGTGAAGAGAATGAGTTTGAGGCCCCTGATGATGCTTACATTCTGGACTCAGCTGAGGATGCTGGATTGGATCTACCTTACTCTTGCAGGGCTGGAGCTTGCTCTACTTGCGCCGGTCAAGTTGTTTCTGGGACAGTGGACCAATCAGATGGATCGTTCTTGGACGACAATCAAATGGAGAAGGGTTATGTCCTGACCTGCGTTGCATACCCACAATCCGACTGTGTCATCCACACACACAAGGAAGGTGATTTGTACTGA

Protein sequence

MSAINLPTSCLIKSATPRRSCALVQRPSSLGSFRSVSRAFGLKSSSFKVTAMATTYKVKLIGPNGEENEFEAPDDAYILDSAEDAGLDLPYSCRAGACSTCAGQVVSGTVDQSDGSFLDDNQMEKGYVLTCVAYPQSDCVIHTHKEGDLY

Homology

[Close]

BLAST of CmaCh15G005210.1 vs. Swiss-Prot
Match: FER3_MAIZE (Ferredoxin-3, chloroplastic OS=Zea mays GN=FDX3 PE=2 SV=1)

HSP 1 Score: 192.2 bits (487), Expect = 4.1e-48
Identity = 99/153 (64.71%), Postives = 118/153 (77.12%), Query Frame = 1


Query: 1   MSAINLPTSCLIKS--ATPRRSCALVQRPSSLGSFRSVSRAFGLKSSS-FKVTAMATTYK 60
           MS     TSC +     T + S   V+ PSSL  F  V++   LK+S    V+AMA  YK
Sbjct: 1   MSTSTFATSCTLLGNVRTTQASQTAVKSPSSLSFFSQVTKVPSLKTSKKLDVSAMAV-YK 60

Query: 61  VKLIGPNGEENEFEAPDDAYILDSAEDAGLDLPYSCRAGACSTCAGQVVSGTVDQSDGSF 120
           VKL+GP GEE+EF+APDDAYILD+AE AG++LPYSCRAGACSTCAG++ SG+VDQSDGSF
Sbjct: 61  VKLVGPEGEEHEFDAPDDAYILDAAETAGVELPYSCRAGACSTCAGKIESGSVDQSDGSF 120

Query: 121 LDDNQMEKGYVLTCVAYPQSDCVIHTHKEGDLY 151
           LDD Q E+GYVLTCV+YP+SDCVIHTHKEGDLY
Sbjct: 121 LDDGQQEEGYVLTCVSYPKSDCVIHTHKEGDLY 152

[Close]

BLAST of CmaCh15G005210.1 vs. Swiss-Prot
Match: FER3_ARATH (Ferredoxin-3, chloroplastic OS=Arabidopsis thaliana GN=FD3 PE=1 SV=1)

HSP 1 Score: 187.6 bits (475), Expect = 1.0e-46
Identity = 92/144 (63.89%), Postives = 114/144 (79.17%), Query Frame = 1


Query: 8   TSCLIKSATPRRSCALVQRPSSLGSFRSVSRAFGLKSSSFKVTA-MATTYKVKLIGPNGE 67
           T  +++S T  +         S+GS + VSR+FGLK S+    A M+  YKVKL+GP+G+
Sbjct: 12  TKAVLRSQTTNKLITNKSYNLSVGSTKRVSRSFGLKCSANSGGATMSAVYKVKLLGPDGQ 71

Query: 68  ENEFEAPDDAYILDSAEDAGLDLPYSCRAGACSTCAGQVVSGTVDQSDGSFLDDNQMEKG 127
           E+EFE  DD YILD+AE+AG+DLPYSCRAGACSTCAGQ+VSG VDQSDGSFL+D+ +EKG
Sbjct: 72  EDEFEVQDDQYILDAAEEAGVDLPYSCRAGACSTCAGQIVSGNVDQSDGSFLEDSHLEKG 131

Query: 128 YVLTCVAYPQSDCVIHTHKEGDLY 151
           YVLTCVAYPQSDCVIHTHKE +L+
Sbjct: 132 YVLTCVAYPQSDCVIHTHKETELF 155

[Close]

BLAST of CmaCh15G005210.1 vs. Swiss-Prot
Match: FER2_RAPSA (Ferredoxin, root R-B2 OS=Raphanus sativus PE=1 SV=1)

HSP 1 Score: 168.7 bits (426), Expect = 4.9e-41
Identity = 75/98 (76.53%), Postives = 87/98 (88.78%), Query Frame = 1


Query: 53  ATTYKVKLIGPNGEENEFEAPDDAYILDSAEDAGLDLPYSCRAGACSTCAGQVVSGTVDQ 112
           +  YKVKLIGP GEENEFE  DD +ILD+AE+AG+DLPYSCRAGACSTCAGQ+V G VDQ
Sbjct: 1   SAVYKVKLIGPEGEENEFEVQDDQFILDAAEEAGVDLPYSCRAGACSTCAGQIVKGQVDQ 60

Query: 113 SDGSFLDDNQMEKGYVLTCVAYPQSDCVIHTHKEGDLY 151
           S+GSFL+D+  EKG+VLTCVAYPQSDCVIHTHKE +L+
Sbjct: 61  SEGSFLEDDHFEKGFVLTCVAYPQSDCVIHTHKETELF 98

[Close]

BLAST of CmaCh15G005210.1 vs. Swiss-Prot
Match: FER6_MAIZE (Ferredoxin-6, chloroplastic OS=Zea mays GN=FDX6 PE=2 SV=1)

HSP 1 Score: 167.2 bits (422), Expect = 1.4e-40
Identity = 78/124 (62.90%), Postives = 101/124 (81.45%), Query Frame = 1


Query: 28  SSLGSFRSVSRAFGLK-SSSFKVTAMATTYKVKLIGPNGEENEFEAPDDAYILDSAEDAG 87
           S  G  R  +RA G + SS F  +A A  +KVKL+GP+G E+EFEAPDD YIL++AE AG
Sbjct: 32  SFAGHARQAARASGPRLSSRFVASAAAVLHKVKLVGPDGTEHEFEAPDDTYILEAAETAG 91

Query: 88  LDLPYSCRAGACSTCAGQVVSGTVDQSDGSFLDDNQMEKGYVLTCVAYPQSDCVIHTHKE 147
           ++LP+SCRAG+CSTCAG++ +G VDQS+GSFLDD QM +GY+LTC++YP++DCVIHTHKE
Sbjct: 92  VELPFSCRAGSCSTCAGRMSAGEVDQSEGSFLDDGQMAEGYLLTCISYPKADCVIHTHKE 151

Query: 148 GDLY 151
            DLY
Sbjct: 152 EDLY 155

[Close]

BLAST of CmaCh15G005210.1 vs. Swiss-Prot
Match: FER1_RAPSA (Ferredoxin, root R-B1 OS=Raphanus sativus PE=1 SV=1)

HSP 1 Score: 166.8 bits (421), Expect = 1.8e-40
Identity = 74/98 (75.51%), Postives = 87/98 (88.78%), Query Frame = 1


Query: 53  ATTYKVKLIGPNGEENEFEAPDDAYILDSAEDAGLDLPYSCRAGACSTCAGQVVSGTVDQ 112
           +  YKVKLIGP+G+ENEF+ PDD YILD+AE+AG+DLPYSCRAGACSTCAG++  G VDQ
Sbjct: 1   SAVYKVKLIGPDGQENEFDVPDDQYILDAAEEAGVDLPYSCRAGACSTCAGKIEKGQVDQ 60

Query: 113 SDGSFLDDNQMEKGYVLTCVAYPQSDCVIHTHKEGDLY 151
           SDGSFL+D+  EKGYVLTCVAYPQSD VIHTHKE +L+
Sbjct: 61  SDGSFLEDHHFEKGYVLTCVAYPQSDLVIHTHKEEELF 98

[Close]

BLAST of CmaCh15G005210.1 vs. TrEMBL
Match: A0A0A0KNA3_CUCSA (Uncharacterized protein OS=Cucumis sativus GN=Csa_5G413260 PE=4 SV=1)

HSP 1 Score: 258.1 bits (658), Expect = 6.8e-66
Identity = 131/150 (87.33%), Postives = 139/150 (92.67%), Query Frame = 1


Query: 1   MSAINLPTSCLIKSATPRRSCALVQRPSSLGSFRSVSRAFGLKSSSFKVTAMATTYKVKL 60
           MS + LPTS LIK  T RRS ALVQRPSSL SFRSVSR+FGLKSS FKV+AMA +YKVKL
Sbjct: 1   MSTVTLPTSSLIKPPTLRRSNALVQRPSSLCSFRSVSRSFGLKSSQFKVSAMA-SYKVKL 60

Query: 61  IGPNGEENEFEAPDDAYILDSAEDAGLDLPYSCRAGACSTCAGQVVSGTVDQSDGSFLDD 120
           IGP+GEENEF+APDDAYILDSAE+AGLDLPYSCRAGACSTCAGQVVSGTVDQ+DGSFLDD
Sbjct: 61  IGPDGEENEFDAPDDAYILDSAENAGLDLPYSCRAGACSTCAGQVVSGTVDQTDGSFLDD 120

Query: 121 NQMEKGYVLTCVAYPQSDCVIHTHKEGDLY 151
            QMEKGYVLTCVAYPQSDCVIHTHKEGDLY
Sbjct: 121 KQMEKGYVLTCVAYPQSDCVIHTHKEGDLY 149

[Close]

BLAST of CmaCh15G005210.1 vs. TrEMBL
Match: A0A067DNH4_CITSI (Uncharacterized protein OS=Citrus sinensis GN=CISIN_1g031979mg PE=4 SV=1)

HSP 1 Score: 234.6 bits (597), Expect = 8.0e-59
Identity = 114/150 (76.00%), Postives = 132/150 (88.00%), Query Frame = 1


Query: 1   MSAINLPTSCLIKSATPRRSCALVQRPSSLGSFRSVSRAFGLKSSSFKVTAMATTYKVKL 60
           MS + LPTSCL ++A   +  +LV+ P+SLGS RSVS+AFGLK SSFK +AMA  YKVKL
Sbjct: 1   MSTVRLPTSCLFQAAPRSKKFSLVKSPASLGSTRSVSKAFGLKCSSFKASAMAV-YKVKL 60

Query: 61  IGPNGEENEFEAPDDAYILDSAEDAGLDLPYSCRAGACSTCAGQVVSGTVDQSDGSFLDD 120
           IGPNGEENEF+APDDAYI+DSAED G++LPYSCRAGACSTCAGQ+VSG+VDQSDGSFLDD
Sbjct: 61  IGPNGEENEFDAPDDAYIIDSAEDTGMELPYSCRAGACSTCAGQMVSGSVDQSDGSFLDD 120

Query: 121 NQMEKGYVLTCVAYPQSDCVIHTHKEGDLY 151
            QMEKG+VLTCVAYP SDCVI+THKE +LY
Sbjct: 121 KQMEKGFVLTCVAYPTSDCVIYTHKESELY 149

[Close]

BLAST of CmaCh15G005210.1 vs. TrEMBL
Match: V4TZC2_9ROSI (Uncharacterized protein OS=Citrus clementina GN=CICLE_v10016676mg PE=4 SV=1)

HSP 1 Score: 234.2 bits (596), Expect = 1.0e-58
Identity = 114/150 (76.00%), Postives = 131/150 (87.33%), Query Frame = 1


Query: 1   MSAINLPTSCLIKSATPRRSCALVQRPSSLGSFRSVSRAFGLKSSSFKVTAMATTYKVKL 60
           MS + LPTSCL ++A   +  +LV+ P SLGS RSVS+AFGLK SSFK +AMA  YKVKL
Sbjct: 1   MSTVRLPTSCLFQAAPRSKKFSLVKSPGSLGSTRSVSKAFGLKCSSFKASAMAV-YKVKL 60

Query: 61  IGPNGEENEFEAPDDAYILDSAEDAGLDLPYSCRAGACSTCAGQVVSGTVDQSDGSFLDD 120
           IGPNGEENEF+APDDAYI+DSAED G++LPYSCRAGACSTCAGQ+VSG+VDQSDGSFLDD
Sbjct: 61  IGPNGEENEFDAPDDAYIIDSAEDTGMELPYSCRAGACSTCAGQMVSGSVDQSDGSFLDD 120

Query: 121 NQMEKGYVLTCVAYPQSDCVIHTHKEGDLY 151
            QMEKG+VLTCVAYP SDCVI+THKE +LY
Sbjct: 121 KQMEKGFVLTCVAYPTSDCVIYTHKESELY 149

[Close]

BLAST of CmaCh15G005210.1 vs. TrEMBL
Match: V4U9R4_9ROSI (Uncharacterized protein OS=Citrus clementina GN=CICLE_v10016676mg PE=4 SV=1)

HSP 1 Score: 234.2 bits (596), Expect = 1.0e-58
Identity = 114/150 (76.00%), Postives = 131/150 (87.33%), Query Frame = 1


Query: 1   MSAINLPTSCLIKSATPRRSCALVQRPSSLGSFRSVSRAFGLKSSSFKVTAMATTYKVKL 60
           MS + LPTSCL ++A   +  +LV+ P SLGS RSVS+AFGLK SSFK +AMA  YKVKL
Sbjct: 65  MSTVRLPTSCLFQAAPRSKKFSLVKSPGSLGSTRSVSKAFGLKCSSFKASAMAV-YKVKL 124

Query: 61  IGPNGEENEFEAPDDAYILDSAEDAGLDLPYSCRAGACSTCAGQVVSGTVDQSDGSFLDD 120
           IGPNGEENEF+APDDAYI+DSAED G++LPYSCRAGACSTCAGQ+VSG+VDQSDGSFLDD
Sbjct: 125 IGPNGEENEFDAPDDAYIIDSAEDTGMELPYSCRAGACSTCAGQMVSGSVDQSDGSFLDD 184

Query: 121 NQMEKGYVLTCVAYPQSDCVIHTHKEGDLY 151
            QMEKG+VLTCVAYP SDCVI+THKE +LY
Sbjct: 185 KQMEKGFVLTCVAYPTSDCVIYTHKESELY 213

[Close]

BLAST of CmaCh15G005210.1 vs. TrEMBL
Match: B9RPT1_RICCO (Ferredoxin-3, chloroplast, putative OS=Ricinus communis GN=RCOM_1539220 PE=4 SV=1)

HSP 1 Score: 232.6 bits (592), Expect = 3.0e-58
Identity = 110/157 (70.06%), Postives = 134/157 (85.35%), Query Frame = 1


Query: 1   MSAINLPTSCLIKS-------ATPRRSCALVQRPSSLGSFRSVSRAFGLKSSSFKVTAMA 60
           MS + LPTSCL++S       A+  +SCAL++   S GS ++VS+AFGLKSSSF+V+AM+
Sbjct: 1   MSTVRLPTSCLVRSVPLSSKAASMDKSCALIKSSCSFGSVKNVSKAFGLKSSSFRVSAMS 60

Query: 61  TTYKVKLIGPNGEENEFEAPDDAYILDSAEDAGLDLPYSCRAGACSTCAGQVVSGTVDQS 120
             YKVKLIGPNGEE+EF+APDD Y+LD+AE+AG++LPYSCRAGACSTCAGQ+ SG+VDQS
Sbjct: 61  KVYKVKLIGPNGEESEFDAPDDTYVLDAAENAGVELPYSCRAGACSTCAGQLASGSVDQS 120

Query: 121 DGSFLDDNQMEKGYVLTCVAYPQSDCVIHTHKEGDLY 151
           DGSFL D QMEKGYVLTC++YP SDCVIHTHKEGDLY
Sbjct: 121 DGSFLSDEQMEKGYVLTCISYPTSDCVIHTHKEGDLY 157

[Close]

BLAST of CmaCh15G005210.1 vs. TAIR10
Match: AT2G27510.1 (AT2G27510.1 ferredoxin 3)

HSP 1 Score: 187.6 bits (475), Expect = 5.7e-48
Identity = 92/144 (63.89%), Postives = 114/144 (79.17%), Query Frame = 1


Query: 8   TSCLIKSATPRRSCALVQRPSSLGSFRSVSRAFGLKSSSFKVTA-MATTYKVKLIGPNGE 67
           T  +++S T  +         S+GS + VSR+FGLK S+    A M+  YKVKL+GP+G+
Sbjct: 12  TKAVLRSQTTNKLITNKSYNLSVGSTKRVSRSFGLKCSANSGGATMSAVYKVKLLGPDGQ 71

Query: 68  ENEFEAPDDAYILDSAEDAGLDLPYSCRAGACSTCAGQVVSGTVDQSDGSFLDDNQMEKG 127
           E+EFE  DD YILD+AE+AG+DLPYSCRAGACSTCAGQ+VSG VDQSDGSFL+D+ +EKG
Sbjct: 72  EDEFEVQDDQYILDAAEEAGVDLPYSCRAGACSTCAGQIVSGNVDQSDGSFLEDSHLEKG 131

Query: 128 YVLTCVAYPQSDCVIHTHKEGDLY 151
           YVLTCVAYPQSDCVIHTHKE +L+
Sbjct: 132 YVLTCVAYPQSDCVIHTHKETELF 155

[Close]

BLAST of CmaCh15G005210.1 vs. TAIR10
Match: AT1G10960.1 (AT1G10960.1 ferredoxin 1)

HSP 1 Score: 155.2 bits (391), Expect = 3.1e-38
Identity = 87/144 (60.42%), Postives = 106/144 (73.61%), Query Frame = 1


Query: 8   TSCLIKSATPRRSCALVQRPSSLGS--FRSVSRAFGLKSSSFK---VTAMATTYKVKLIG 67
           +S ++ ++  RR     Q P SL S  F +    FGLKSS+ +   VTAMAT YKVK I 
Sbjct: 7   SSAIVSTSFLRRQ----QTPISLRSLPFANTQSLFGLKSSTARGGRVTAMAT-YKVKFIT 66

Query: 68  PNGEENEFEAPDDAYILDSAEDAGLDLPYSCRAGACSTCAGQVVSGTVDQSDGSFLDDNQ 127
           P GE+ E E  +D Y+LD+AE+AGLDLPYSCRAG+CS+CAG+VVSG++DQSD SFLDD Q
Sbjct: 67  PEGEQ-EVECEEDVYVLDAAEEAGLDLPYSCRAGSCSSCAGKVVSGSIDQSDQSFLDDEQ 126

Query: 128 MEKGYVLTCVAYPQSDCVIHTHKE 147
           M +GYVLTCVAYP SD VI THKE
Sbjct: 127 MSEGYVLTCVAYPTSDVVIETHKE 144

[Close]

BLAST of CmaCh15G005210.1 vs. TAIR10
Match: AT1G60950.1 (AT1G60950.1 2Fe-2S ferredoxin-like superfamily protein)

HSP 1 Score: 146.7 bits (369), Expect = 1.1e-35
Identity = 85/147 (57.82%), Postives = 105/147 (71.43%), Query Frame = 1


Query: 8   TSCLIKSATPRRSCALVQRPSSLGSFRSVSRA--FGLKSSSFK---VTAMATTYKVKLIG 67
           +S ++ ++  RRS A    P SL S  S +    FGLKS + +   VTAMAT YKVK I 
Sbjct: 7   SSAIVGTSFIRRSPA----PISLRSLPSANTQSLFGLKSGTARGGRVTAMAT-YKVKFIT 66

Query: 68  PNGEENEFEAPDDAYILDSAEDAGLDLPYSCRAGACSTCAGQVVSGTVDQSDGSFLDDNQ 127
           P GE  E E  DD Y+LD+AE+AG+DLPYSCRAG+CS+CAG+VVSG+VDQSD SFLDD Q
Sbjct: 67  PEGEL-EVECDDDVYVLDAAEEAGIDLPYSCRAGSCSSCAGKVVSGSVDQSDQSFLDDEQ 126

Query: 128 MEKGYVLTCVAYPQSDCVIHTHKEGDL 150
           + +G+VLTC AYP SD  I THKE D+
Sbjct: 127 IGEGFVLTCAAYPTSDVTIETHKEEDI 147

[Close]

BLAST of CmaCh15G005210.1 vs. TAIR10
Match: AT5G10000.1 (AT5G10000.1 ferredoxin 4)

HSP 1 Score: 137.9 bits (346), Expect = 5.2e-33
Identity = 65/112 (58.04%), Postives = 83/112 (74.11%), Query Frame = 1


Query: 40  FGLKSS--SFKVTAMATTYKVKLIGPNGEENEFEAPDDAYILDSAEDAGLDLPYSCRAGA 99
           FGL SS  +F       + KVKLI P GEE E E  +D  IL+SAE+AGL+LPYSCR+G 
Sbjct: 36  FGLSSSRGNFGKVFAKESRKVKLISPEGEEQEIEGNEDCCILESAENAGLELPYSCRSGT 95

Query: 100 CSTCAGQVVSGTVDQSDGSFLDDNQMEKGYVLTCVAYPQSDCVIHTHKEGDL 150
           C TC G++VSG VDQS GSFL++ Q++KGY+LTC+A P  DCV++THK+ DL
Sbjct: 96  CGTCCGKLVSGKVDQSLGSFLEEEQIQKGYILTCIALPLEDCVVYTHKQSDL 147

[Close]

BLAST of CmaCh15G005210.1 vs. TAIR10
Match: AT4G14890.1 (AT4G14890.1 2Fe-2S ferredoxin-like superfamily protein)

HSP 1 Score: 89.7 bits (221), Expect = 1.6e-18
Identity = 45/98 (45.92%), Postives = 60/98 (61.22%), Query Frame = 1


Query: 52  MATTYKVKLIGPNGEENEFEAPDDAYILDSAEDAGLDLPYSCRAGACSTCAGQVVSGTVD 111
           +A  YKV ++  +G+  E E   D  IL  A D+GLD+PY C  G C TC  ++V+GTVD
Sbjct: 49  IARAYKV-VVEHDGKTTELEVEPDETILSKALDSGLDVPYDCNLGVCMTCPAKLVTGTVD 108

Query: 112 QSDGSFLDDNQMEKGYVLTCVAYPQSDCVIHTHKEGDL 150
           QS G  L D+ +E+GY L C +YP SDC I    E +L
Sbjct: 109 QS-GGMLSDDVVERGYTLLCASYPTSDCHIKMIPEEEL 144

[Close]

BLAST of CmaCh15G005210.1 vs. NCBI nr
Match: gi|659113488|ref|XP_008456600.1| (PREDICTED: ferredoxin, root R-B2-like [Cucumis melo])

HSP 1 Score: 258.5 bits (659), Expect = 7.4e-66
Identity = 131/150 (87.33%), Postives = 140/150 (93.33%), Query Frame = 1


Query: 1   MSAINLPTSCLIKSATPRRSCALVQRPSSLGSFRSVSRAFGLKSSSFKVTAMATTYKVKL 60
           MS + LPTSCLIK+ T RRS ALVQRPSSL SFRSVS++FGLKSS  KV+AMA +YKVKL
Sbjct: 1   MSTVILPTSCLIKTPTLRRSNALVQRPSSLCSFRSVSQSFGLKSSQSKVSAMA-SYKVKL 60

Query: 61  IGPNGEENEFEAPDDAYILDSAEDAGLDLPYSCRAGACSTCAGQVVSGTVDQSDGSFLDD 120
           IGPNGEENEFEAPDDAYILDSAE+AGLDLPYSCRAGACSTCAGQVVSGTVDQ+DGSFLDD
Sbjct: 61  IGPNGEENEFEAPDDAYILDSAENAGLDLPYSCRAGACSTCAGQVVSGTVDQTDGSFLDD 120

Query: 121 NQMEKGYVLTCVAYPQSDCVIHTHKEGDLY 151
            QME+GYVLTCVAYPQSDCVIHTHKEGDLY
Sbjct: 121 KQMEQGYVLTCVAYPQSDCVIHTHKEGDLY 149

[Close]

BLAST of CmaCh15G005210.1 vs. NCBI nr
Match: gi|778702570|ref|XP_011655228.1| (PREDICTED: ferredoxin, root R-B1-like [Cucumis sativus])

HSP 1 Score: 258.1 bits (658), Expect = 9.7e-66
Identity = 131/150 (87.33%), Postives = 139/150 (92.67%), Query Frame = 1


Query: 1   MSAINLPTSCLIKSATPRRSCALVQRPSSLGSFRSVSRAFGLKSSSFKVTAMATTYKVKL 60
           MS + LPTS LIK  T RRS ALVQRPSSL SFRSVSR+FGLKSS FKV+AMA +YKVKL
Sbjct: 1   MSTVTLPTSSLIKPPTLRRSNALVQRPSSLCSFRSVSRSFGLKSSQFKVSAMA-SYKVKL 60

Query: 61  IGPNGEENEFEAPDDAYILDSAEDAGLDLPYSCRAGACSTCAGQVVSGTVDQSDGSFLDD 120
           IGP+GEENEF+APDDAYILDSAE+AGLDLPYSCRAGACSTCAGQVVSGTVDQ+DGSFLDD
Sbjct: 61  IGPDGEENEFDAPDDAYILDSAENAGLDLPYSCRAGACSTCAGQVVSGTVDQTDGSFLDD 120

Query: 121 NQMEKGYVLTCVAYPQSDCVIHTHKEGDLY 151
            QMEKGYVLTCVAYPQSDCVIHTHKEGDLY
Sbjct: 121 KQMEKGYVLTCVAYPQSDCVIHTHKEGDLY 149

[Close]

BLAST of CmaCh15G005210.1 vs. NCBI nr
Match: gi|641825123|gb|KDO44408.1| (hypothetical protein CISIN_1g031979mg [Citrus sinensis])

HSP 1 Score: 234.6 bits (597), Expect = 1.2e-58
Identity = 114/150 (76.00%), Postives = 132/150 (88.00%), Query Frame = 1


Query: 1   MSAINLPTSCLIKSATPRRSCALVQRPSSLGSFRSVSRAFGLKSSSFKVTAMATTYKVKL 60
           MS + LPTSCL ++A   +  +LV+ P+SLGS RSVS+AFGLK SSFK +AMA  YKVKL
Sbjct: 1   MSTVRLPTSCLFQAAPRSKKFSLVKSPASLGSTRSVSKAFGLKCSSFKASAMAV-YKVKL 60

Query: 61  IGPNGEENEFEAPDDAYILDSAEDAGLDLPYSCRAGACSTCAGQVVSGTVDQSDGSFLDD 120
           IGPNGEENEF+APDDAYI+DSAED G++LPYSCRAGACSTCAGQ+VSG+VDQSDGSFLDD
Sbjct: 61  IGPNGEENEFDAPDDAYIIDSAEDTGMELPYSCRAGACSTCAGQMVSGSVDQSDGSFLDD 120

Query: 121 NQMEKGYVLTCVAYPQSDCVIHTHKEGDLY 151
            QMEKG+VLTCVAYP SDCVI+THKE +LY
Sbjct: 121 KQMEKGFVLTCVAYPTSDCVIYTHKESELY 149

[Close]

BLAST of CmaCh15G005210.1 vs. NCBI nr
Match: gi|567906837|ref|XP_006445732.1| (hypothetical protein CICLE_v10016676mg [Citrus clementina])

HSP 1 Score: 234.2 bits (596), Expect = 1.5e-58
Identity = 114/150 (76.00%), Postives = 131/150 (87.33%), Query Frame = 1


Query: 1   MSAINLPTSCLIKSATPRRSCALVQRPSSLGSFRSVSRAFGLKSSSFKVTAMATTYKVKL 60
           MS + LPTSCL ++A   +  +LV+ P SLGS RSVS+AFGLK SSFK +AMA  YKVKL
Sbjct: 1   MSTVRLPTSCLFQAAPRSKKFSLVKSPGSLGSTRSVSKAFGLKCSSFKASAMAV-YKVKL 60

Query: 61  IGPNGEENEFEAPDDAYILDSAEDAGLDLPYSCRAGACSTCAGQVVSGTVDQSDGSFLDD 120
           IGPNGEENEF+APDDAYI+DSAED G++LPYSCRAGACSTCAGQ+VSG+VDQSDGSFLDD
Sbjct: 61  IGPNGEENEFDAPDDAYIIDSAEDTGMELPYSCRAGACSTCAGQMVSGSVDQSDGSFLDD 120

Query: 121 NQMEKGYVLTCVAYPQSDCVIHTHKEGDLY 151
            QMEKG+VLTCVAYP SDCVI+THKE +LY
Sbjct: 121 KQMEKGFVLTCVAYPTSDCVIYTHKESELY 149

[Close]

BLAST of CmaCh15G005210.1 vs. NCBI nr
Match: gi|567906835|ref|XP_006445731.1| (hypothetical protein CICLE_v10016676mg [Citrus clementina])

HSP 1 Score: 234.2 bits (596), Expect = 1.5e-58
Identity = 114/150 (76.00%), Postives = 131/150 (87.33%), Query Frame = 1


Query: 1   MSAINLPTSCLIKSATPRRSCALVQRPSSLGSFRSVSRAFGLKSSSFKVTAMATTYKVKL 60
           MS + LPTSCL ++A   +  +LV+ P SLGS RSVS+AFGLK SSFK +AMA  YKVKL
Sbjct: 65  MSTVRLPTSCLFQAAPRSKKFSLVKSPGSLGSTRSVSKAFGLKCSSFKASAMAV-YKVKL 124

Query: 61  IGPNGEENEFEAPDDAYILDSAEDAGLDLPYSCRAGACSTCAGQVVSGTVDQSDGSFLDD 120
           IGPNGEENEF+APDDAYI+DSAED G++LPYSCRAGACSTCAGQ+VSG+VDQSDGSFLDD
Sbjct: 125 IGPNGEENEFDAPDDAYIIDSAEDTGMELPYSCRAGACSTCAGQMVSGSVDQSDGSFLDD 184

Query: 121 NQMEKGYVLTCVAYPQSDCVIHTHKEGDLY 151
            QMEKG+VLTCVAYP SDCVI+THKE +LY
Sbjct: 185 KQMEKGFVLTCVAYPTSDCVIYTHKESELY 213

The following BLAST results are available for this feature:

BLAST of CmaCh15G005210.1 vs. Swiss-Prot


Match Name	E-value	Identity	Description
FER3_MAIZE	4.1e-48	64.71	Ferredoxin-3, chloroplastic OS=Zea mays GN=FDX3 PE=2 SV=1	[more]
FER3_ARATH	1.0e-46	63.89	Ferredoxin-3, chloroplastic OS=Arabidopsis thaliana GN=FD3 PE=1 SV=1	[more]
FER2_RAPSA	4.9e-41	76.53	Ferredoxin, root R-B2 OS=Raphanus sativus PE=1 SV=1	[more]
FER6_MAIZE	1.4e-40	62.90	Ferredoxin-6, chloroplastic OS=Zea mays GN=FDX6 PE=2 SV=1	[more]
FER1_RAPSA	1.8e-40	75.51	Ferredoxin, root R-B1 OS=Raphanus sativus PE=1 SV=1	[more]

BLAST of CmaCh15G005210.1 vs. TrEMBL


Match Name	E-value	Identity	Description
A0A0A0KNA3_CUCSA	6.8e-66	87.33	Uncharacterized protein OS=Cucumis sativus GN=Csa_5G413260 PE=4 SV=1	[more]
A0A067DNH4_CITSI	8.0e-59	76.00	Uncharacterized protein OS=Citrus sinensis GN=CISIN_1g031979mg PE=4 SV=1	[more]
V4TZC2_9ROSI	1.0e-58	76.00	Uncharacterized protein OS=Citrus clementina GN=CICLE_v10016676mg PE=4 SV=1	[more]
V4U9R4_9ROSI	1.0e-58	76.00	Uncharacterized protein OS=Citrus clementina GN=CICLE_v10016676mg PE=4 SV=1	[more]
B9RPT1_RICCO	3.0e-58	70.06	Ferredoxin-3, chloroplast, putative OS=Ricinus communis GN=RCOM_1539220 PE=4 SV=...	[more]

BLAST of CmaCh15G005210.1 vs. TAIR10


Match Name	E-value	Identity	Description
AT2G27510.1	5.7e-48	63.89	ferredoxin 3	[more]
AT1G10960.1	3.1e-38	60.42	ferredoxin 1	[more]
AT1G60950.1	1.1e-35	57.82	2Fe-2S ferredoxin-like superfamily protein	[more]
AT5G10000.1	5.2e-33	58.04	ferredoxin 4	[more]
AT4G14890.1	1.6e-18	45.92	2Fe-2S ferredoxin-like superfamily protein	[more]

BLAST of CmaCh15G005210.1 vs. NCBI nr


Match Name	E-value	Identity	Description
gi\|659113488\|ref\|XP_008456600.1\|	7.4e-66	87.33	PREDICTED: ferredoxin, root R-B2-like [Cucumis melo]	[more]
gi\|778702570\|ref\|XP_011655228.1\|	9.7e-66	87.33	PREDICTED: ferredoxin, root R-B1-like [Cucumis sativus]	[more]
gi\|641825123\|gb\|KDO44408.1\|	1.2e-58	76.00	hypothetical protein CISIN_1g031979mg [Citrus sinensis]	[more]
gi\|567906837\|ref\|XP_006445732.1\|	1.5e-58	76.00	hypothetical protein CICLE_v10016676mg [Citrus clementina]	[more]
gi\|567906835\|ref\|XP_006445731.1\|	1.5e-58	76.00	hypothetical protein CICLE_v10016676mg [Citrus clementina]	[more]

Annotated Terms

The following terms have been associated with this mRNA:

Vocabulary: **INTERPRO**
Term	Definition
IPR001041	2Fe-2S_ferredoxin-type
IPR006058	2Fe2S_fd_BS
IPR010241	Fd_pln
IPR012675	Beta-grasp_dom_sf

Vocabulary: **Molecular Function**
Term	Definition
GO:0009055	electron carrier activity
GO:0051536	iron-sulfur cluster binding
GO:0051537	2 iron, 2 sulfur cluster binding

Vocabulary: **Biological Process**
Term	Definition
GO:0022900	electron transport chain

GO Annotation

GO Assignments

This mRNA is annotated with the following GO terms.

Category	Term Accession	Term Name
biological_process	GO:0022900	electron transport chain
cellular_component	GO:0005575	cellular_component
molecular_function	GO:0051537	2 iron, 2 sulfur cluster binding
molecular_function	GO:0009055	electron carrier activity
molecular_function	GO:0051536	iron-sulfur cluster binding
molecular_function	GO:0046872	metal ion binding

Relationships

This mRNA is a part of the following gene feature(s):


Feature Name	Unique Name	Type
CmaCh15G005210	CmaCh15G005210	gene

The following polypeptide feature(s) derives from this mRNA:


Feature Name	Unique Name	Type
CmaCh15G005210.1	CmaCh15G005210.1-protein	polypeptide

The following exon feature(s) are a part of this mRNA:


Feature Name	Unique Name	Type
CmaCh15G005210.1.exon.1	CmaCh15G005210.1.exon.1	exon

The following CDS feature(s) are a part of this mRNA:


Feature Name	Unique Name	Type
CmaCh15G005210.1.CDS.1	CmaCh15G005210.1.CDS.1	CDS

InterPro

Analysis Name: InterPro Annotations of Cucurbita maxima
Date Performed: 2017-05-20


IPR Term	IPR Description	Source	Source Term	Source Description	Alignment
IPR001041	2Fe-2S ferredoxin-type iron-sulfur binding domain	PFAM	PF00111	Fer2	coord: 63..136 score: 2.7
IPR001041	2Fe-2S ferredoxin-type iron-sulfur binding domain	PROFILE	PS51085	2FE2S_FER_2	coord: 56..147 score: 13
IPR001041	2Fe-2S ferredoxin-type iron-sulfur binding domain	unknown	SSF54292	2Fe-2S ferredoxin-like	coord: 54..146 score: 5.11
IPR006058	2Fe-2S ferredoxin, iron-sulphur binding site	PROSITE	PS00197	2FE2S_FER_1	coord: 93..101 scor
IPR010241	Ferredoxin [2Fe-2S], plant	TIGRFAMs	TIGR02008	TIGR02008	coord: 55..150 score: 8.4
IPR012675	Beta-grasp domain	GENE3D	G3DSA:3.10.20.30		coord: 52..150 score: 6.6
None	No IPR available	PANTHER	PTHR19370	NADH-CYTOCHROME B5 REDUCTASE	coord: 1..150 score: 9.7
None	No IPR available	PANTHER	PTHR19370:SF124	FERREDOXIN-4, CHLOROPLASTIC-RELATED	coord: 1..150 score: 9.7