CmaCh10G000250 (gene) Cucurbita maxima (Rimu) | Cucurbit Genomics Database (CuGenDB)

Overview


Name	CmaCh10G000250
Type	gene
Organism	Cucurbita maxima (Cucurbita maxima (Rimu))
Description	Acyl carrier protein
Location	Cma_Chr10 : 96760 .. 98808 (-)

Genome Viewer

Gene Expression

Sequences

The following sequences are available for this feature:

Gene sequence (with intron)

Legend: exonfive_prime_UTRCDSthree_prime_UTR

Hold the cursor over a type above to highlight its positions in the sequence below.

TCTTTCGACAGAGCCATTAAAGTTGCCTTCTTGCTTCCAGGTAACTCTTAATTACTCCTATCCCCCTTCTTCTTCTTCTTCCCTACACTGATCTCTCTCACTAAGACACAATAAATATGGATCTTGCTATAAAAACGGCCCCCAAATTGGAGTCTGTGCGGTGATTTTGATTATGTTCGCACATAATGAGCTTATATATAATCAATGGCAGCGGAAATTGTTATTTAGAAGAAAAAAGATCGAGAATTTCTCATGGCTTTCCCTGTTTTGCGCGCTCTTTATAGGCATTGGCTGTTAGGCATCTGGACATCCCTCAAACACGAACCAACACACGTAACTTAAAACCTGGATTTAATTTATGGAGGACGTGTGGCCACTGGCAAGGCAGTGAAGGCCTGAAAAAATGTCATTCATAGATCATAATTCAGACTAGCCATAATCAGTCTCTTCATGATTCCTTTTAAGTTAAAAATGCTCAATTTGTATCAATATCAACCAAAGAAAGAAAAGAAAAAAAGGCTTGGCTATTTAAAAAATTTGTGGGTCCAAGGCATTCTAGTGTCGCATAATAGACTGAGCAGACAAATTCTGAAATTGTTAATTATACTTTTAGTCCTTCAGGTGTTCATCATTTTTAAAAATAAAATAAATAATCGAAGTATCAAAAACAAGTACAGATTTTTTAATATACATCAAGACAATCATATATGATGAATGTATTATCGAAGAATTTGTTTGAGGTGTGTGAGTGTGTCAGATTGGGGGCAGTGTGTAGATAGGATTTGATAAAATGGATTGAGGGAGCGGCAACGTCCGCCACTCGTTCCTCATTTCCATTTTCCACAGTTTAAAGAGCTCCAACCAACAAGACTACTTTATCCAATCCCTTCCCCCAACTCCTTTTGTTCTGGTCTTGAAGTTTATTATACTGTATTCCCTCGTATTCCATCAAACTCTCTCTAATGGCAATGGCTTCCTTTTCATCTACTTGCCTCAGATTCCGCATACCTCTCAACCAAGCTGCCAAGACCAACCAGAACCAGGTATTCTCTGGACATCCCACTCCACTGCATATTTATTGCATTCTATGTACAGTTCCCTAAGTGAAATTGATATTATTGTATGCTGCTTCTGGCAGTGTCAGGTTCTCAGAAGAAGCTCCGCCGGGGCCGGTGGATTGCTCAAGAGTAATGGTTTCCATCTTGTCACTCACAGAACCTCCCAATCCCACCTGCGTGTCTCTTGTGCGGTAATTTCGGCATTTTCATTTGCTAATTAACTCACTTTGCTGTTACCTTTTGTTTGTTGTGTGAATTGGGTTTGAAAGTTAATTGGTAAATTTATGAAATGGAATGGACAGGCAAAACCAGAAACAGTTGATAAGGTGTGTTCAATTGTGAGGAAACAATTGGCTTTGCCTGAAAGCTCAGAGCTCACCCCTGAATCCAAGTTCTCAGCTCTTGGTGCCGACTCCCTCGACACAGTACGCCTTTTCCATAACCTTCCCCAAACAAAACATCACACTAATCTTCTTCATACTTCTGTTTCCCTTATTATATATAATTACGGTTCTGTTCATTGCCCCATTTGACAAAATCAAATATAATGTTGGCATGGCCACAGGTGGAGATTATTATGACCTTGGAGGAAGAATTTAGCATCAATATCGAAGAGGATAACGCTCAGAACATAACGACAGTACAAGAAGCTGCCGATTTGATTGAGGACCTTGTTGTTAAGCAGCAATCTTAACTCTTAAGCTACCAAAGACTAGCTTTTGGTAAGTTAAAGTTGTATTATTCCGAGAGGCAGATGATAAGAGTTGGGTTGAGTAGGCAGGATGTTATTTTTTCACCTTGAATGATTTTTTAAAGCAAATTAATGTACTTGTACTCGTGGAATTTATGAACAAAAACCATTTTCGATTTGTTTTTCAATCTGTACAAGTTCAACTTGTTAGCTTGAAATTAATGCAATATGAAGCATAGTGTCGTGTTGCTTTCTTCTCCCAAACTGAGGGGCTGGATCAATCTATTTCATGGATTGCAG

mRNA sequence

TCTTTCGACAGAGCCATTAAAGTTGCCTTCTTGCTTCCAGGTAACTCTTAATTACTCCTATCCCCCTTCTTCTTCTTCTTCCCTACACTGATCTCTCTCACTAAGACACAATAAATATGGATCTTGCTATAAAAACGGCCCCCAAATTGGAGTCTGTGCGGTGATTTTGATTATGTTCGCACATAATGAGCTTATATATAATCAATGGCAGCGGAAATTGTTATTTAGAAGAAAAAAGATCGAGAATTTCTCATGGCTTTCCCTGTTTTGCGCGCTCTTTATAGGCATTGGCTGTTAGGCATCTGGACATCCCTCAAACACGAACCAACACACGTAACTTAAAACCTGGATTTAATTTATGGAGGACGTGTGGCCACTGGCAAGGCAGTGAAGGCCTGAAAAAATGTCATTCATAGATCATAATTCAGACTAGCCATAATCAGTCTCTTCATGATTCCTTTTAAGTTAAAAATGCTCAATTTGTATCAATATCAACCAAAGAAAGAAAAGAAAAAAAGGCTTGGCTATTTAAAAAATTTGTGGGTCCAAGGCATTCTAGTGTCGCATAATAGACTGAGCAGACAAATTCTGAAATTGTTAATTATACTTTTAGTCCTTCAGGTGTTCATCATTTTTAAAAATAAAATAAATAATCGAAGTATCAAAAACAAGTACAGATTTTTTAATATACATCAAGACAATCATATATGATGAATGTATTATCGAAGAATTTGTTTGAGGTGTGTGAGTGTGTCAGATTGGGGGCAGTGTGTAGATAGGATTTGATAAAATGGATTGAGGGAGCGGCAACGTCCGCCACTCGTTCCTCATTTCCATTTTCCACAGTTTAAAGAGCTCCAACCAACAAGACTACTTTATCCAATCCCTTCCCCCAACTCCTTTTGTTCTGGTCTTGAAGTTTATTATACTGTATTCCCTCGTATTCCATCAAACTCTCTCTAATGGCAATGGCTTCCTTTTCATCTACTTGCCTCAGATTCCGCATACCTCTCAACCAAGCTGCCAAGACCAACCAGAACCAGTGTCAGGTTCTCAGAAGAAGCTCCGCCGGGGCCGGTGGATTGCTCAAGAGTAATGGTTTCCATCTTGTCACTCACAGAACCTCCCAATCCCACCTGCGTGTCTCTTGTGCGGCAAAACCAGAAACAGTTGATAAGGTGTGTTCAATTGTGAGGAAACAATTGGCTTTGCCTGAAAGCTCAGAGCTCACCCCTGAATCCAAGTTCTCAGCTCTTGGTGCCGACTCCCTCGACACAGTGGAGATTATTATGACCTTGGAGGAAGAATTTAGCATCAATATCGAAGAGGATAACGCTCAGAACATAACGACAGTACAAGAAGCTGCCGATTTGATTGAGGACCTTGTTGTTAAGCAGCAATCTTAACTCTTAAGCTACCAAAGACTAGCTTTTGGTAAGTTAAAGTTGTATTATTCCGAGAGGCAGATGATAAGAGTTGGGTTGAGTAGGCAGGATGTTATTTTTTCACCTTGAATGATTTTTTAAAGCAAATTAATGTACTTGTACTCGTGGAATTTATGAACAAAAACCATTTTCGATTTGTTTTTCAATCTGTACAAGTTCAACTTGTTAGCTTGAAATTAATGCAATATGAAGCATAGTGTCGTGTTGCTTTCTTCTCCCAAACTGAGGGGCTGGATCAATCTATTTCATGGATTGCAG

Coding sequence (CDS)

ATGGCAATGGCTTCCTTTTCATCTACTTGCCTCAGATTCCGCATACCTCTCAACCAAGCTGCCAAGACCAACCAGAACCAGTGTCAGGTTCTCAGAAGAAGCTCCGCCGGGGCCGGTGGATTGCTCAAGAGTAATGGTTTCCATCTTGTCACTCACAGAACCTCCCAATCCCACCTGCGTGTCTCTTGTGCGGCAAAACCAGAAACAGTTGATAAGGTGTGTTCAATTGTGAGGAAACAATTGGCTTTGCCTGAAAGCTCAGAGCTCACCCCTGAATCCAAGTTCTCAGCTCTTGGTGCCGACTCCCTCGACACAGTGGAGATTATTATGACCTTGGAGGAAGAATTTAGCATCAATATCGAAGAGGATAACGCTCAGAACATAACGACAGTACAAGAAGCTGCCGATTTGATTGAGGACCTTGTTGTTAAGCAGCAATCTTAA

Protein sequence

MAMASFSSTCLRFRIPLNQAAKTNQNQCQVLRRSSAGAGGLLKSNGFHLVTHRTSQSHLRVSCAAKPETVDKVCSIVRKQLALPESSELTPESKFSALGADSLDTVEIIMTLEEEFSINIEEDNAQNITTVQEAADLIEDLVVKQQS

Homology

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BLAST of CmaCh10G000250 vs. Swiss-Prot
Match: ACP4_ARATH (Acyl carrier protein 4, chloroplastic OS=Arabidopsis thaliana GN=ACP4 PE=2 SV=1)

HSP 1 Score: 127.1 bits (318), Expect = 1.6e-28
Identity = 79/143 (55.24%), Postives = 98/143 (68.53%), Query Frame = 1


Query: 3   MASFSSTCLRFRIPLNQAAKTNQNQCQVLRRSSAGAGGLLKSNGFHLVTHRTSQSHLRVS 62
           MAS S+T L F+ P    +       QVLR++S+      +S  F   T  T    L++S
Sbjct: 1   MASLSTTSLSFKAPSTTIS-------QVLRKASSS-----QSVTFGRFTSSTKSLRLQIS 60

Query: 63  CAAKPETVDKVCSIVRKQLALPESSELTPESKFSALGADSLDTVEIIMTLEEEFSINIEE 122
           CAAK ETV KV  IV++QLAL     LT ESKFSALGADSLDTVEI+M LEE+F+I++EE
Sbjct: 61  CAAKAETVQKVSDIVKEQLALAADVPLTAESKFSALGADSLDTVEIVMALEEKFNISVEE 120

Query: 123 DNAQNITTVQEAADLIEDLVVKQ 146
            +AQNITT+QEAADLIEDLV K+
Sbjct: 121 SDAQNITTIQEAADLIEDLVQKK 131

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BLAST of CmaCh10G000250 vs. Swiss-Prot
Match: ACP1_CASGL (Acyl carrier protein 1, chloroplastic OS=Casuarina glauca GN=ACP1 PE=2 SV=1)

HSP 1 Score: 119.8 bits (299), Expect = 2.5e-26
Identity = 62/93 (66.67%), Postives = 77/93 (82.80%), Query Frame = 1


Query: 53  RTSQSHLRVSCAAKPETVDKVCSIVRKQLALPESSELTPESKFSALGADSLDTVEIIMTL 112
           R   +   V CAAKPETV+KVC+IV+KQLALP+ S +T ESKF+ LGADSLDTVEI+M L
Sbjct: 42  RMRSARFVVCCAAKPETVEKVCAIVKKQLALPDDSAVTGESKFATLGADSLDTVEIVMGL 101

Query: 113 EEEFSINIEEDNAQNITTVQEAADLIEDLVVKQ 146
           EEEF IN+EE++AQ+I TVQ+AADLIE L+ K+
Sbjct: 102 EEEFGINVEEESAQSIATVQDAADLIEKLIEKK 134

[Close]

BLAST of CmaCh10G000250 vs. Swiss-Prot
Match: ACP1_CUPLA (Acyl carrier protein 1, chloroplastic OS=Cuphea lanceolata GN=ACL1.1 PE=2 SV=1)

HSP 1 Score: 117.9 bits (294), Expect = 9.6e-26
Identity = 63/87 (72.41%), Postives = 75/87 (86.21%), Query Frame = 1


Query: 59  LRVSCAAKPETVDKVCSIVRKQLALPESSELTPESKFSALGADSLDTVEIIMTLEEEFSI 118
           LRVSC AKPETV KVC IV+KQLALP+ SE+   SKFSALGADSLDTVEI+M LEEEF I
Sbjct: 52  LRVSCQAKPETVAKVCGIVKKQLALPDDSEVNGLSKFSALGADSLDTVEIVMGLEEEFGI 111

Query: 119 NIEEDNAQNITTVQEAADLIEDLVVKQ 146
           ++EE++AQ+I TVQ+AADLIE L+ K+
Sbjct: 112 SVEEESAQSIQTVQDAADLIEKLMEKK 138

[Close]

BLAST of CmaCh10G000250 vs. Swiss-Prot
Match: ACP2_CUPLA (Acyl carrier protein 2, chloroplastic OS=Cuphea lanceolata GN=ACL1.2 PE=2 SV=1)

HSP 1 Score: 117.5 bits (293), Expect = 1.3e-25
Identity = 62/93 (66.67%), Postives = 78/93 (83.87%), Query Frame = 1


Query: 53  RTSQSHLRVSCAAKPETVDKVCSIVRKQLALPESSELTPESKFSALGADSLDTVEIIMTL 112
           R     LRV+C AKPETV KVC+IV+KQLALP+ S+++  SKFSALGADSLDTVEI+M L
Sbjct: 43  RRGSFSLRVNCQAKPETVTKVCNIVKKQLALPDDSDVSGVSKFSALGADSLDTVEIVMGL 102

Query: 113 EEEFSINIEEDNAQNITTVQEAADLIEDLVVKQ 146
           EEEF I++EE++AQ+I TVQ+AADLIE L+ K+
Sbjct: 103 EEEFGISVEEESAQSIQTVQDAADLIEKLMEKK 135

[Close]

BLAST of CmaCh10G000250 vs. Swiss-Prot
Match: ACP4_CUPLA (Acyl carrier protein 4, chloroplastic OS=Cuphea lanceolata GN=ACL1 PE=3 SV=1)

HSP 1 Score: 116.7 bits (291), Expect = 2.1e-25
Identity = 63/89 (70.79%), Postives = 75/89 (84.27%), Query Frame = 1


Query: 57  SHLRVSCAAKPETVDKVCSIVRKQLALPESSELTPESKFSALGADSLDTVEIIMTLEEEF 116
           S  RVSC AKPETV KVC IV+KQLALP+ SE+   SKFSALGADSLDTVEI+M LEEEF
Sbjct: 49  SFARVSCQAKPETVAKVCRIVKKQLALPDDSEVNGLSKFSALGADSLDTVEIVMGLEEEF 108

Query: 117 SINIEEDNAQNITTVQEAADLIEDLVVKQ 146
            I++EE++AQ+I TVQ+AADLIE L+ K+
Sbjct: 109 GISVEEESAQSIQTVQDAADLIEKLMEKK 137

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BLAST of CmaCh10G000250 vs. TrEMBL
Match: E5GBM2_CUCME (Acyl carrier protein OS=Cucumis melo subsp. melo PE=3 SV=1)

HSP 1 Score: 198.4 bits (503), Expect = 6.2e-48
Identity = 115/145 (79.31%), Postives = 121/145 (83.45%), Query Frame = 1


Query: 3   MASFSSTCLRFRIPLNQAAKTNQNQCQVLRRSSAGAGGLLKSNGFHLVTHRTSQSHLRVS 62
           MASFS+T LRF IP+NQA K N NQ  +LRRS  G G L  +N F          HLRVS
Sbjct: 1   MASFSATSLRFCIPINQANKMNHNQ--LLRRSFPGQGLLSNNNAF----------HLRVS 60

Query: 63  CAAKPETVDKVCSIVRKQLALPESSELTPESKFSALGADSLDTVEIIMTLEEEFSINIEE 122
           CAAKPETVDKVCSIVRKQLALPE+SELTPESKF+ALGADSLDTVEIIMTLEEEFSINIEE
Sbjct: 61  CAAKPETVDKVCSIVRKQLALPETSELTPESKFAALGADSLDTVEIIMTLEEEFSINIEE 120

Query: 123 DNAQNITTVQEAADLIEDLVVKQQS 148
           DNAQNITTVQEAADLIEDLVVKQQS
Sbjct: 121 DNAQNITTVQEAADLIEDLVVKQQS 133

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BLAST of CmaCh10G000250 vs. TrEMBL
Match: A0A0A0LNR6_CUCSA (Acyl carrier protein OS=Cucumis sativus GN=Csa_1G000670 PE=3 SV=1)

HSP 1 Score: 192.6 bits (488), Expect = 3.4e-46
Identity = 111/145 (76.55%), Postives = 120/145 (82.76%), Query Frame = 1


Query: 3   MASFSSTCLRFRIPLNQAAKTNQNQCQVLRRSSAGAGGLLKSNGFHLVTHRTSQSHLRVS 62
           MASFS+T LRF +P+NQA K N NQ  +LRRS  G G L  +N FH           RVS
Sbjct: 1   MASFSATSLRFCMPINQANKMNHNQ--LLRRSLLGRGFLNNNNAFHF----------RVS 60

Query: 63  CAAKPETVDKVCSIVRKQLALPESSELTPESKFSALGADSLDTVEIIMTLEEEFSINIEE 122
           CAAKPET+DKVCSIVRKQLALPE+SELTPESKF+ALGADSLDTVEIIMTLEEEFSINIEE
Sbjct: 61  CAAKPETLDKVCSIVRKQLALPETSELTPESKFAALGADSLDTVEIIMTLEEEFSINIEE 120

Query: 123 DNAQNITTVQEAADLIEDLVVKQQS 148
           DNAQNITTVQEAADLIE+LVVKQQS
Sbjct: 121 DNAQNITTVQEAADLIENLVVKQQS 133

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BLAST of CmaCh10G000250 vs. TrEMBL
Match: A0A059BF77_EUCGR (Acyl carrier protein OS=Eucalyptus grandis GN=EUGRSUZ_G01960 PE=3 SV=1)

HSP 1 Score: 140.2 bits (352), Expect = 2.0e-30
Identity = 85/143 (59.44%), Postives = 102/143 (71.33%), Query Frame = 1


Query: 3   MASFSSTCLRFRIPLNQAAKTNQNQCQVLRRSSAGAGGLLKSNGFHLVTHRTSQSHLRVS 62
           MAS S+  + FR     + K+N+     L+  S G     + NGF  +      S  RVS
Sbjct: 1   MASVSAASVTFRALSKPSLKSNETSS--LKVVSLG----WRKNGFPSLR----SSRFRVS 60

Query: 63  CAAKPETVDKVCSIVRKQLALPESSELTPESKFSALGADSLDTVEIIMTLEEEFSINIEE 122
           CAAKPETVDKVC IVRKQLALP  +ELTPESKFSA+GADSLDTVEI+M LEEEF I++EE
Sbjct: 61  CAAKPETVDKVCEIVRKQLALPAEAELTPESKFSAIGADSLDTVEIVMALEEEFDISVEE 120

Query: 123 DNAQNITTVQEAADLIEDLVVKQ 146
           +++QNITTVQEAADLIE LV K+
Sbjct: 121 ESSQNITTVQEAADLIEKLVQKK 133

[Close]

BLAST of CmaCh10G000250 vs. TrEMBL
Match: B9I3Y4_POPTR (Acyl carrier protein OS=Populus trichocarpa GN=POPTR_0012s10710g PE=3 SV=2)

HSP 1 Score: 137.5 bits (345), Expect = 1.3e-29
Identity = 82/140 (58.57%), Postives = 102/140 (72.86%), Query Frame = 1


Query: 3   MASFSSTCLRFRIPLNQAAKTNQNQCQVLRRSSAGAGGLLKSNGFHLVTHRTSQSHLRVS 62
           MA+ S+TCLRF+   +Q+ K++Q    +   S     G  K+NGF  +      S  RVS
Sbjct: 47  MATVSATCLRFQPLFSQSNKSSQAAASLKPVSV----GWAKNNGFPSL----KASRFRVS 106

Query: 63  CAAKPETVDKVCSIVRKQLALPESSELTPESKFSALGADSLDTVEIIMTLEEEFSINIEE 122
           CAAKPETV+KV  IVRKQLAL   +ELT ESKF+ALGADSLDTVEI+M LEEEF IN+EE
Sbjct: 107 CAAKPETVEKVIEIVRKQLALTPETELTNESKFAALGADSLDTVEIVMALEEEFDINVEE 166

Query: 123 DNAQNITTVQEAADLIEDLV 143
           +N+QNITTV+EAAD+I+ LV
Sbjct: 167 ENSQNITTVREAADMIDKLV 178

[Close]

BLAST of CmaCh10G000250 vs. TrEMBL
Match: A0A059BDY2_EUCGR (Acyl carrier protein OS=Eucalyptus grandis GN=EUGRSUZ_G01960 PE=3 SV=1)

HSP 1 Score: 135.6 bits (340), Expect = 5.0e-29
Identity = 85/144 (59.03%), Postives = 102/144 (70.83%), Query Frame = 1


Query: 3   MASFSSTCLRFRIPLNQAAKTNQNQCQVLRRSSAGAGGLLKSNGFHLVTHRTSQSHLRVS 62
           MAS S+  + FR     + K+N+     L+  S G     + NGF  +      S  RVS
Sbjct: 1   MASVSAASVTFRALSKPSLKSNETSS--LKVVSLG----WRKNGFPSLR----SSRFRVS 60

Query: 63  CA-AKPETVDKVCSIVRKQLALPESSELTPESKFSALGADSLDTVEIIMTLEEEFSINIE 122
           CA AKPETVDKVC IVRKQLALP  +ELTPESKFSA+GADSLDTVEI+M LEEEF I++E
Sbjct: 61  CAQAKPETVDKVCEIVRKQLALPAEAELTPESKFSAIGADSLDTVEIVMALEEEFDISVE 120

Query: 123 EDNAQNITTVQEAADLIEDLVVKQ 146
           E+++QNITTVQEAADLIE LV K+
Sbjct: 121 EESSQNITTVQEAADLIEKLVQKK 134

[Close]

BLAST of CmaCh10G000250 vs. TAIR10
Match: AT4G25050.2 (AT4G25050.2 acyl carrier protein 4)

HSP 1 Score: 118.2 bits (295), Expect = 4.2e-27
Identity = 79/155 (50.97%), Postives = 98/155 (63.23%), Query Frame = 1


Query: 3   MASFSSTCLRFRIPLNQAAKTNQNQCQVLRRSSAGAGGLLKSNGFHLVTHRTSQSHLRVS 62
           MAS S+T L F+ P    +       QVLR++S+      +S  F   T  T    L++S
Sbjct: 1   MASLSTTSLSFKAPSTTIS-------QVLRKASSS-----QSVTFGRFTSSTKSLRLQIS 60

Query: 63  CAAKPETVDKVCSIVRKQLALPESSELTPESKFSALGADSLDT------------VEIIM 122
           CAAK ETV KV  IV++QLAL     LT ESKFSALGADSLDT            VEI+M
Sbjct: 61  CAAKAETVQKVSDIVKEQLALAADVPLTAESKFSALGADSLDTVCYTLSVSYHCHVEIVM 120

Query: 123 TLEEEFSINIEEDNAQNITTVQEAADLIEDLVVKQ 146
            LEE+F+I++EE +AQNITT+QEAADLIEDLV K+
Sbjct: 121 ALEEKFNISVEESDAQNITTIQEAADLIEDLVQKK 143

[Close]

BLAST of CmaCh10G000250 vs. TAIR10
Match: AT1G54580.1 (AT1G54580.1 acyl carrier protein 2)

HSP 1 Score: 111.7 bits (278), Expect = 3.9e-25
Identity = 62/108 (57.41%), Postives = 82/108 (75.93%), Query Frame = 1


Query: 38  AGGLLKSNGFHLVTHRTSQSHLRVSCAAKPETVDKVCSIVRKQLALPESSELTPESKFSA 97
           + G   S  F+L   R   + L VSCAAKPETVDKVC++VRKQL+L E+ E+T  +KF+A
Sbjct: 30  SNGRRSSLSFNL---RQLPTRLTVSCAAKPETVDKVCAVVRKQLSLKEADEITAATKFAA 89

Query: 98  LGADSLDTVEIIMTLEEEFSINIEEDNAQNITTVQEAADLIEDLVVKQ 146
           LGADSLDTVEI+M LEEEF I + E+ AQ+I TV++AA LIE+L+ ++
Sbjct: 90  LGADSLDTVEIVMGLEEEFGIEMAEEKAQSIATVEQAAALIEELLFEK 134

[Close]

BLAST of CmaCh10G000250 vs. TAIR10
Match: AT1G54630.1 (AT1G54630.1 acyl carrier protein 3)

HSP 1 Score: 110.2 bits (274), Expect = 1.1e-24
Identity = 57/93 (61.29%), Postives = 76/93 (81.72%), Query Frame = 1


Query: 53  RTSQSHLRVSCAAKPETVDKVCSIVRKQLALPESSELTPESKFSALGADSLDTVEIIMTL 112
           R   + L V CAAKPETVDKVC++VRKQL+L E+ E+T  +KF+ALGADSLDTVEI+M L
Sbjct: 42  RQLPTRLTVYCAAKPETVDKVCAVVRKQLSLKEADEITAATKFAALGADSLDTVEIVMGL 101

Query: 113 EEEFSINIEEDNAQNITTVQEAADLIEDLVVKQ 146
           EEEF I + E+ AQ+I TV++AA LIE+L++++
Sbjct: 102 EEEFGIEMAEEKAQSIATVEQAAALIEELLLEK 134

[Close]

BLAST of CmaCh10G000250 vs. TAIR10
Match: AT5G27200.1 (AT5G27200.1 acyl carrier protein 5)

HSP 1 Score: 99.4 bits (246), Expect = 2.0e-21
Identity = 64/139 (46.04%), Postives = 84/139 (60.43%), Query Frame = 1


Query: 4   ASFSSTCLRFRIPLNQAAKTNQNQCQVLRRSSAGAGGLLKSNGFHLVTHRTSQSHLRVSC 63
           A FS+T  RF   LN+ A    N+               K+N       R   + L VSC
Sbjct: 13  APFSATTTRFC--LNKQATIFNNE---------------KTNNLSFSLRRLMPARLAVSC 72

Query: 64  AAKPETVDKVCSIVRKQLALPESSELTPESKFSALGADSLDTVEIIMTLEEEFSINIEED 123
           A K ETV+KV  IV+KQL+L +  ++T  +KF+ LGADSLDTVEI+M LEEEF I + E+
Sbjct: 73  AVKQETVEKVSEIVKKQLSLTDDQKVTAGTKFTELGADSLDTVEIVMGLEEEFGITMAEE 132

Query: 124 NAQNITTVQEAADLIEDLV 143
            A+ I TVQ+AA+LIE+LV
Sbjct: 133 RAKEIATVQQAAELIEELV 134

[Close]

BLAST of CmaCh10G000250 vs. TAIR10
Match: AT3G05020.1 (AT3G05020.1 acyl carrier protein 1)

HSP 1 Score: 97.8 bits (242), Expect = 5.8e-21
Identity = 58/127 (45.67%), Postives = 84/127 (66.14%), Query Frame = 1


Query: 20  AAKTNQNQCQVLRRSSAGAGGLLKSNGFHLVTHRTSQS----HLRVSCAAKPETVDKVCS 79
           A+ + Q  C    R S     L+ ++G   ++    +S     L VSCAAK ET++KV +
Sbjct: 7   ASVSLQTSCLATTRISFQKPALISNHGKTNLSFNLRRSIPSRRLSVSCAAKQETIEKVSA 66

Query: 80  IVRKQLALPESSELTPESKFSALGADSLDTVEIIMTLEEEFSINIEEDNAQNITTVQEAA 139
           IV+KQL+L    ++  E+KF+ LGADSLDTVEI+M LEEEF+I + E+ AQ I TV++AA
Sbjct: 67  IVKKQLSLTPDKKVVAETKFADLGADSLDTVEIVMGLEEEFNIQMAEEKAQKIATVEQAA 126

Query: 140 DLIEDLV 143
           +LIE+L+
Sbjct: 127 ELIEELI 133

[Close]

BLAST of CmaCh10G000250 vs. NCBI nr
Match: gi|659128820|ref|XP_008464386.1| (PREDICTED: acyl carrier protein 4, chloroplastic [Cucumis melo])

HSP 1 Score: 198.4 bits (503), Expect = 9.0e-48
Identity = 115/145 (79.31%), Postives = 121/145 (83.45%), Query Frame = 1


Query: 3   MASFSSTCLRFRIPLNQAAKTNQNQCQVLRRSSAGAGGLLKSNGFHLVTHRTSQSHLRVS 62
           MASFS+T LRF IP+NQA K N NQ  +LRRS  G G L  +N F          HLRVS
Sbjct: 1   MASFSATSLRFCIPINQANKMNHNQ--LLRRSFPGQGLLSNNNAF----------HLRVS 60

Query: 63  CAAKPETVDKVCSIVRKQLALPESSELTPESKFSALGADSLDTVEIIMTLEEEFSINIEE 122
           CAAKPETVDKVCSIVRKQLALPE+SELTPESKF+ALGADSLDTVEIIMTLEEEFSINIEE
Sbjct: 61  CAAKPETVDKVCSIVRKQLALPETSELTPESKFAALGADSLDTVEIIMTLEEEFSINIEE 120

Query: 123 DNAQNITTVQEAADLIEDLVVKQQS 148
           DNAQNITTVQEAADLIEDLVVKQQS
Sbjct: 121 DNAQNITTVQEAADLIEDLVVKQQS 133

[Close]

BLAST of CmaCh10G000250 vs. NCBI nr
Match: gi|449440504|ref|XP_004138024.1| (PREDICTED: acyl carrier protein 4, chloroplastic [Cucumis sativus])

HSP 1 Score: 192.6 bits (488), Expect = 4.9e-46
Identity = 111/145 (76.55%), Postives = 120/145 (82.76%), Query Frame = 1


Query: 3   MASFSSTCLRFRIPLNQAAKTNQNQCQVLRRSSAGAGGLLKSNGFHLVTHRTSQSHLRVS 62
           MASFS+T LRF +P+NQA K N NQ  +LRRS  G G L  +N FH           RVS
Sbjct: 1   MASFSATSLRFCMPINQANKMNHNQ--LLRRSLLGRGFLNNNNAFHF----------RVS 60

Query: 63  CAAKPETVDKVCSIVRKQLALPESSELTPESKFSALGADSLDTVEIIMTLEEEFSINIEE 122
           CAAKPET+DKVCSIVRKQLALPE+SELTPESKF+ALGADSLDTVEIIMTLEEEFSINIEE
Sbjct: 61  CAAKPETLDKVCSIVRKQLALPETSELTPESKFAALGADSLDTVEIIMTLEEEFSINIEE 120

Query: 123 DNAQNITTVQEAADLIEDLVVKQQS 148
           DNAQNITTVQEAADLIE+LVVKQQS
Sbjct: 121 DNAQNITTVQEAADLIENLVVKQQS 133

[Close]

BLAST of CmaCh10G000250 vs. NCBI nr
Match: gi|702418586|ref|XP_010066441.1| (PREDICTED: acyl carrier protein 4, chloroplastic isoform X2 [Eucalyptus grandis])

HSP 1 Score: 140.2 bits (352), Expect = 2.9e-30
Identity = 85/143 (59.44%), Postives = 102/143 (71.33%), Query Frame = 1


Query: 3   MASFSSTCLRFRIPLNQAAKTNQNQCQVLRRSSAGAGGLLKSNGFHLVTHRTSQSHLRVS 62
           MAS S+  + FR     + K+N+     L+  S G     + NGF  +      S  RVS
Sbjct: 1   MASVSAASVTFRALSKPSLKSNETSS--LKVVSLG----WRKNGFPSLR----SSRFRVS 60

Query: 63  CAAKPETVDKVCSIVRKQLALPESSELTPESKFSALGADSLDTVEIIMTLEEEFSINIEE 122
           CAAKPETVDKVC IVRKQLALP  +ELTPESKFSA+GADSLDTVEI+M LEEEF I++EE
Sbjct: 61  CAAKPETVDKVCEIVRKQLALPAEAELTPESKFSAIGADSLDTVEIVMALEEEFDISVEE 120

Query: 123 DNAQNITTVQEAADLIEDLVVKQ 146
           +++QNITTVQEAADLIE LV K+
Sbjct: 121 ESSQNITTVQEAADLIEKLVQKK 133

[Close]

BLAST of CmaCh10G000250 vs. NCBI nr
Match: gi|566197824|ref|XP_002318163.2| (hypothetical protein POPTR_0012s10710g [Populus trichocarpa])

HSP 1 Score: 137.5 bits (345), Expect = 1.9e-29
Identity = 82/140 (58.57%), Postives = 102/140 (72.86%), Query Frame = 1


Query: 3   MASFSSTCLRFRIPLNQAAKTNQNQCQVLRRSSAGAGGLLKSNGFHLVTHRTSQSHLRVS 62
           MA+ S+TCLRF+   +Q+ K++Q    +   S     G  K+NGF  +      S  RVS
Sbjct: 47  MATVSATCLRFQPLFSQSNKSSQAAASLKPVSV----GWAKNNGFPSL----KASRFRVS 106

Query: 63  CAAKPETVDKVCSIVRKQLALPESSELTPESKFSALGADSLDTVEIIMTLEEEFSINIEE 122
           CAAKPETV+KV  IVRKQLAL   +ELT ESKF+ALGADSLDTVEI+M LEEEF IN+EE
Sbjct: 107 CAAKPETVEKVIEIVRKQLALTPETELTNESKFAALGADSLDTVEIVMALEEEFDINVEE 166

Query: 123 DNAQNITTVQEAADLIEDLV 143
           +N+QNITTV+EAAD+I+ LV
Sbjct: 167 ENSQNITTVREAADMIDKLV 178

[Close]

BLAST of CmaCh10G000250 vs. NCBI nr
Match: gi|702418546|ref|XP_010066440.1| (PREDICTED: acyl carrier protein 4, chloroplastic isoform X1 [Eucalyptus grandis])

HSP 1 Score: 135.6 bits (340), Expect = 7.1e-29
Identity = 85/144 (59.03%), Postives = 102/144 (70.83%), Query Frame = 1


Query: 3   MASFSSTCLRFRIPLNQAAKTNQNQCQVLRRSSAGAGGLLKSNGFHLVTHRTSQSHLRVS 62
           MAS S+  + FR     + K+N+     L+  S G     + NGF  +      S  RVS
Sbjct: 1   MASVSAASVTFRALSKPSLKSNETSS--LKVVSLG----WRKNGFPSLR----SSRFRVS 60

Query: 63  CA-AKPETVDKVCSIVRKQLALPESSELTPESKFSALGADSLDTVEIIMTLEEEFSINIE 122
           CA AKPETVDKVC IVRKQLALP  +ELTPESKFSA+GADSLDTVEI+M LEEEF I++E
Sbjct: 61  CAQAKPETVDKVCEIVRKQLALPAEAELTPESKFSAIGADSLDTVEIVMALEEEFDISVE 120

Query: 123 EDNAQNITTVQEAADLIEDLVVKQ 146
           E+++QNITTVQEAADLIE LV K+
Sbjct: 121 EESSQNITTVQEAADLIEKLVQKK 134

The following BLAST results are available for this feature:

BLAST of CmaCh10G000250 vs. Swiss-Prot


Match Name	E-value	Identity	Description
ACP4_ARATH	1.6e-28	55.24	Acyl carrier protein 4, chloroplastic OS=Arabidopsis thaliana GN=ACP4 PE=2 SV=1	[more]
ACP1_CASGL	2.5e-26	66.67	Acyl carrier protein 1, chloroplastic OS=Casuarina glauca GN=ACP1 PE=2 SV=1	[more]
ACP1_CUPLA	9.6e-26	72.41	Acyl carrier protein 1, chloroplastic OS=Cuphea lanceolata GN=ACL1.1 PE=2 SV=1	[more]
ACP2_CUPLA	1.3e-25	66.67	Acyl carrier protein 2, chloroplastic OS=Cuphea lanceolata GN=ACL1.2 PE=2 SV=1	[more]
ACP4_CUPLA	2.1e-25	70.79	Acyl carrier protein 4, chloroplastic OS=Cuphea lanceolata GN=ACL1 PE=3 SV=1	[more]

BLAST of CmaCh10G000250 vs. TrEMBL


Match Name	E-value	Identity	Description
E5GBM2_CUCME	6.2e-48	79.31	Acyl carrier protein OS=Cucumis melo subsp. melo PE=3 SV=1	[more]
A0A0A0LNR6_CUCSA	3.4e-46	76.55	Acyl carrier protein OS=Cucumis sativus GN=Csa_1G000670 PE=3 SV=1	[more]
A0A059BF77_EUCGR	2.0e-30	59.44	Acyl carrier protein OS=Eucalyptus grandis GN=EUGRSUZ_G01960 PE=3 SV=1	[more]
B9I3Y4_POPTR	1.3e-29	58.57	Acyl carrier protein OS=Populus trichocarpa GN=POPTR_0012s10710g PE=3 SV=2	[more]
A0A059BDY2_EUCGR	5.0e-29	59.03	Acyl carrier protein OS=Eucalyptus grandis GN=EUGRSUZ_G01960 PE=3 SV=1	[more]

BLAST of CmaCh10G000250 vs. TAIR10


Match Name	E-value	Identity	Description
AT4G25050.2	4.2e-27	50.97	acyl carrier protein 4	[more]
AT1G54580.1	3.9e-25	57.41	acyl carrier protein 2	[more]
AT1G54630.1	1.1e-24	61.29	acyl carrier protein 3	[more]
AT5G27200.1	2.0e-21	46.04	acyl carrier protein 5	[more]
AT3G05020.1	5.8e-21	45.67	acyl carrier protein 1	[more]

BLAST of CmaCh10G000250 vs. NCBI nr


Match Name	E-value	Identity	Description
gi\|659128820\|ref\|XP_008464386.1\|	9.0e-48	79.31	PREDICTED: acyl carrier protein 4, chloroplastic [Cucumis melo]	[more]
gi\|449440504\|ref\|XP_004138024.1\|	4.9e-46	76.55	PREDICTED: acyl carrier protein 4, chloroplastic [Cucumis sativus]	[more]
gi\|702418586\|ref\|XP_010066441.1\|	2.9e-30	59.44	PREDICTED: acyl carrier protein 4, chloroplastic isoform X2 [Eucalyptus grandis]	[more]
gi\|566197824\|ref\|XP_002318163.2\|	1.9e-29	58.57	hypothetical protein POPTR_0012s10710g [Populus trichocarpa]	[more]
gi\|702418546\|ref\|XP_010066440.1\|	7.1e-29	59.03	PREDICTED: acyl carrier protein 4, chloroplastic isoform X1 [Eucalyptus grandis]	[more]

Annotated Terms

The following terms have been associated with this gene:

Vocabulary: **INTERPRO**
Term	Definition
IPR003231	Acyl_carrier
IPR006162	Ppantetheine_attach_site
IPR009081	PP-bd_ACP
IPR020806	PKS_PP-bd

Vocabulary: **Biological Process**
Term	Definition
GO:0006633	fatty acid biosynthetic process

Vocabulary: **Molecular Function**
Term	Definition
GO:0031177	phosphopantetheine binding

GO Annotation

GO Assignments

This gene is annotated with the following GO terms.

Category	Term Accession	Term Name
biological_process	GO:0006633	fatty acid biosynthetic process
biological_process	GO:0009245	lipid A biosynthetic process
biological_process	GO:0009735	response to cytokinin
biological_process	GO:0009416	response to light stimulus
cellular_component	GO:0005575	cellular_component
cellular_component	GO:0009941	chloroplast envelope
cellular_component	GO:0009570	chloroplast stroma
cellular_component	GO:0005829	cytosol
molecular_function	GO:0031177	phosphopantetheine binding
molecular_function	GO:0000036	ACP phosphopantetheine attachment site binding involved in fatty acid biosynthetic process
molecular_function	GO:0000035	acyl binding

Relationships

The following mRNA feature(s) are a part of this gene:


Feature Name	Unique Name	Type
CmaCh10G000250.1	CmaCh10G000250.1	mRNA

InterPro

Analysis Name: InterPro Annotations of Cucurbita maxima
Date Performed: 2017-05-20


IPR Term	IPR Description	Source	Source Term	Source Description	Alignment
IPR003231	Acyl carrier protein (ACP)	PRODOM	PD000887		coord: 99..139 score: 1.0
IPR003231	Acyl carrier protein (ACP)	HAMAP	MF_01217	Acyl_carrier	coord: 68..142 score: 17
IPR003231	Acyl carrier protein (ACP)	TIGRFAMs	TIGR00517	TIGR00517	coord: 68..140 score: 2.6
IPR006162	Phosphopantetheine attachment site	PROSITE	PS00012	PHOSPHOPANTETHEINE	coord: 97..112 scor
IPR009081	Phosphopantetheine binding ACP domain	GENE3D	G3DSA:1.10.1200.10		coord: 58..144 score: 9.5
IPR009081	Phosphopantetheine binding ACP domain	PFAM	PF00550	PP-binding	coord: 71..138 score: 2.8
IPR009081	Phosphopantetheine binding ACP domain	PROFILE	PS50075	ACP_DOMAIN	coord: 69..139 score: 19
IPR009081	Phosphopantetheine binding ACP domain	unknown	SSF47336	ACP-like	coord: 67..142 score: 5.1
IPR020806	Polyketide synthase, phosphopantetheine-binding domain	SMART	SM00823	PKS_PP	coord: 70..142 score: 0.
None	No IPR available	PANTHER	PTHR20863	ACYL CARRIER PROTEIN/ZINC FINGER PROTEIN 593-RELATED	coord: 2..147 score: 3.3
None	No IPR available	PANTHER	PTHR20863:SF28	ACYL CARRIER PROTEIN 4, CHLOROPLASTIC	coord: 2..147 score: 3.3

Synteny

The following gene(s) are orthologous to this gene:


Gene	Orthologue	Organism	Block
CmaCh10G000250	Cucsa.156980	Cucumber (Gy14) v1	cgycmaB0433
CmaCh10G000250	Cla019314	Watermelon (97103) v1	cmawmB072
CmaCh10G000250	Csa1G000670	Cucumber (Chinese Long) v2	cmacuB048
CmaCh10G000250	MELO3C026170	Melon (DHL92) v3.5.1	cmameB065
CmaCh10G000250	ClCG06G018280	Watermelon (Charleston Gray)	cmawcgB072
CmaCh10G000250	CSPI01G00170	Wild cucumber (PI 183967)	cmacpiB049
CmaCh10G000250	CmoCh10G000230	Cucurbita moschata (Rifu)	cmacmoB067
CmaCh10G000250	Lsi06G016750	Bottle gourd (USVL1VR-Ls)	cmalsiB072
CmaCh10G000250	Cp4.1LG18g09290	Cucurbita pepo (Zucchini)	cmacpeB080
CmaCh10G000250	MELO3C026170.2	Melon (DHL92) v3.6.1	cmamedB068
CmaCh10G000250	CsaV3_1G000160	Cucumber (Chinese Long) v3	cmacucB0058
CmaCh10G000250	Cla97C06G128040	Watermelon (97103) v2	cmawmbB082
CmaCh10G000250	Bhi02G000477	Wax gourd	cmawgoB0080
CmaCh10G000250	CsGy1G000150	Cucumber (Gy14) v2	cgybcmaB004
CmaCh10G000250	Carg10249	Silver-seed gourd	carcmaB0510

The following gene(s) are paralogous to this gene:

None

The following block(s) are covering this gene:


Gene	Organism	Block
CmaCh10G000250	Cucumber (Gy14) v2	cgybcmaB289
CmaCh10G000250	Silver-seed gourd	carcmaB0853
CmaCh10G000250	Cucumber (Chinese Long) v3	cmacucB0085
CmaCh10G000250	Cucurbita maxima (Rimu)	cmacmaB073
CmaCh10G000250	Cucurbita moschata (Rifu)	cmacmoB069
CmaCh10G000250	Cucurbita pepo (Zucchini)	cmacpeB094