Carg10249 (gene) Silver-seed gourd | Cucurbit Genomics Database (CuGenDB)

Overview


Name	Carg10249
Type	gene
Organism	Cucurbita argyrosperma (Silver-seed gourd)
Description	Acyl carrier protein
Location	Cucurbita_argyrosperma_scaffold_047 : 93542 .. 95968 (-)

Genome Viewer

Gene Expression

Sequences

The following sequences are available for this feature:

Gene sequence (with intron)

Legend: five_prime_UTRexonpolypeptideCDSthree_prime_UTR

Hold the cursor over a type above to highlight its positions in the sequence below.

GTTGAACACTGCTCATTTGTAGACATAAAATGGCGTTGCCTTAAAGGTGTGAAGGAAGACTTGGATATTTAACATCGATATTCAGAGTTTACCTGCATATTGCACTTGACGAGGTCGAGGGGGGTGACAGTCATGTGGGTGAGTCCACAACTCAAAATGCCGCCTACTGTACAAGCGGCGTAGAAGGGCGGTGAATACATCTTTATCTTCTCTTTCGGAGCTTCAATTGGGAAGCTCCTGCCGTAACTCCATGCCGGCGTCGTCCTAACCACTGTTTGGGAAATCCCCCAATTAGCAGAATACACAAAGCTTGGCACCAGAGGATTTCGCTGCCCATCTTTCGACAGAGCCATTAAAGTTGCCTTCTTGCTTCCAGGTAACTCGTAATTATTCCTATCCCCCTTCTTCTTCTTCTTCTTCCCTACACTGATCTCTCTCACCAAGACACAATAAATATGGATCTTACTATAAAAACGGCCCCCAAATTGGAGTCTGTGCGGTGATTTTGATTATGTTCGAACAGAATGAGCTTATATATAATCAATGGCAGCGGAAATTGTTATTTAGAAGAAAAAAGATGGAGAATTTCTCAGGGCTTTCCCTGTTTTGCGCGCTCTTTATAGGCATTGGCTGTTAGGCATCTGGACATCCCTCAAACACGAACCAACACACGTAACTTAAAACCTGGATTTTAATTTATGGAGGACGTGTGGCCACTGGCAAGGCAGTGAAGGCCTGAAAAAATGTCATTCATAGATCATAATTCAGACTAGCCATAATCAGTCTCTTCACGATTCCTTTTAGGTTAAAAATGCTCAATTTGTATCAATATCAACCAAAGAAAGAAAAGAAAAAAAGGCTTGGCTATTTAAAAAATTTGTGGGTCCAAGGCTTTCTAGTGTCCCATAATAGACTGAGCAGACAAATTCTGAAATTGTTAATTATACTTTTAGTCCTTCAGATGTTCATAATTTTTAAAAATAAAATAAATAATCGAAGTATAAAAAACAAGTACAGATTTTTTAATATACATCTAGACAATCATATTATGATGAATGTATTATCGAAGAATTTGTTTGAGGTGTGTGAGTGTGTCAGATTGGGGGCAGTGTGTAGATAGGATTTGATAAAATGGATTGAGGGAGCGCCAACGTCCGCCACTCGTTCCTCATTTCCATTTTCCACAGTTTAAAGAGCTCCAAACCAACAAGACTACTTTATCAAATCCCTTCCCTCAACTCCTTTTGTTCTGGTCTTGAAGTTTATTATACTGTATTCCCTCGTATTCCATCAAACTCTCTCTAATGGCAATGGCTTCCTTTTCATCTACTTGCCTCAGATTCCGCATACCTCTCAACCAAGCTGCCAAGACCAACCAGAACCAGGTATTCTCTGGACATCCCACTCCACTACATATTTATTGCATTCTATGTACAGTTCCCTAAGTGAAATTGATATTATTGTATGCTGCTTCTGGCAATGTCAGGTTCTCAGAAGAAGCTCCGCCGGGGCCGGTGGATTGCTCAAGAGTAATGGTTTCCGTCTTGTCACTCACAGAACCTCCCAATCCCACCTGCGTGTCTCTTGTGCGGTAAGTTCGGTATTTTCATTTGCTAATTAACTCACTTTGCTGTTACCTTTTGTTTGTTGTGTGAATTGAGTTTGAGAGTTAATTGGTAAATTTATGAAATGGAATGGACAGGCAAAACCAGAAACAGTTGATAAGGTGTGTTCAATTGTGAGGAAACAATTGGCTTTGCCTGAAAGCTCAGAGCTCACCCCTGAATCCAAGTTCTCAGCTCTTGGTGCCGACTCCCTCGACACAGTACGCCTTTTCCATAACCTTCCCCAAACAAAACATCACACTAATCTTCTTCATACTTCTGTTTCCCTTATTATATATAATTACGGTTCTGTTCATTGCCCCATTTGACAAAATCAAATATAATGTTGGCATGGCCACAGGTGGAGATTATTATGACCTTGGAGGAAGAATTTAGCATCAATATCGAAGAGGATAACGCTCAGAACATAACGACAGTACAAGAAGCTGCCGATTTGATTGAGGACCTTGTTGTTAAGCAGCAACCTTAACTCTTAAGCTACCAAATACTAGCTTTTGGTAAGTTAAAGTTGTATTATTCCGAGAGGCAGATGATAAGAGTTGGGTTGAGTAGGCAGGATGTTATTTTTTCTCCTTGAATGATTTTTTAAAGCAAATTAATGTACTTGTACTCGTGGAATTTATGAACAAAAACCATTTTCGATTTGTTTTTCAATCTGTACAAGTTCAACTTGTTAGCTTGAAATTAATGCAATATGAAGCATGGTGTCGTGTTGCTTTCTGCTCCCAAACTGAGGGGCTGGATCAATCTATTTCATGGATTGCAGCGGTGGAAACCAGAGTACTAGTAACTCAAGCTTTTG

mRNA sequence

GTTGAACACTGCTCATTTGTAGACATAAAATGGCGTTGCCTTAAAGAAGTACAGATTTTTTAATATACATCTAGACAATCATATTATGATGAATGTATTATCGAAGAATTTGTTTGAGGTGTGTGAGTGTGTCAGATTGGGGGCAGTGTGTAGATAGGATTTGATAAAATGGATTGAGGGAGCGCCAACGTCCGCCACTCGTTCCTCATTTCCATTTTCCACAGTTTAAAGAGCTCCAAACCAACAAGACTACTTTATCAAATCCCTTCCCTCAACTCCTTTTGTTCTGGTCTTGAAGTTTATTATACTGTATTCCCTCGTATTCCATCAAACTCTCTCTAATGGCAATGGCTTCCTTTTCATCTACTTGCCTCAGATTCCGCATACCTCTCAACCAAGCTGCCAAGACCAACCAGAACCAGGTTCTCAGAAGAAGCTCCGCCGGGGCCGGTGGATTGCTCAAGAGTAATGGTTTCCGTCTTGTCACTCACAGAACCTCCCAATCCCACCTGCGTGTCTCTTGTGCGGCAAAACCAGAAACAGTTGATAAGGTGTGTTCAATTGTGAGGAAACAATTGGCTTTGCCTGAAAGCTCAGAGCTCACCCCTGAATCCAAGTTCTCAGCTCTTGGTGCCGACTCCCTCGACACAGTGGAGATTATTATGACCTTGGAGGAAGAATTTAGCATCAATATCGAAGAGGATAACGCTCAGAACATAACGACAGTACAAGAAGCTGCCGATTTGATTGAGGACCTTGTTGTTAAGCAGCAACCTTAACTCTTAAGCTACCAAATACTAGCTTTTGGTAAGTTAAAGTTGTATTATTCCGAGAGGCAGATGATAAGAGTTGGGTTGAGTAGGCAGGATGTTATTTTTTCTCCTTGAATGATTTTTTAAAGCAAATTAATGTACTTGTACTCGTGGAATTTATGAACAAAAACCATTTTCGATTTGTTTTTCAATCTGTACAAGTTCAACTTGTTAGCTTGAAATTAATGCAATATGAAGCATGGTGTCGTGTTGCTTTCTGCTCCCAAACTGAGGGGCTGGATCAATCTATTTCATGGATTGCAGCGGTGGAAACCAGAGTACTAGTAACTCAAGCTTTTG

Coding sequence (CDS)

ATGGCAATGGCTTCCTTTTCATCTACTTGCCTCAGATTCCGCATACCTCTCAACCAAGCTGCCAAGACCAACCAGAACCAGGTTCTCAGAAGAAGCTCCGCCGGGGCCGGTGGATTGCTCAAGAGTAATGGTTTCCGTCTTGTCACTCACAGAACCTCCCAATCCCACCTGCGTGTCTCTTGTGCGGCAAAACCAGAAACAGTTGATAAGGTGTGTTCAATTGTGAGGAAACAATTGGCTTTGCCTGAAAGCTCAGAGCTCACCCCTGAATCCAAGTTCTCAGCTCTTGGTGCCGACTCCCTCGACACAGTGGAGATTATTATGACCTTGGAGGAAGAATTTAGCATCAATATCGAAGAGGATAACGCTCAGAACATAACGACAGTACAAGAAGCTGCCGATTTGATTGAGGACCTTGTTGTTAAGCAGCAACCTTAA

Protein sequence

MAMASFSSTCLRFRIPLNQAAKTNQNQVLRRSSAGAGGLLKSNGFRLVTHRTSQSHLRVSCAAKPETVDKVCSIVRKQLALPESSELTPESKFSALGADSLDTVEIIMTLEEEFSINIEEDNAQNITTVQEAADLIEDLVVKQQP

Homology

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BLAST of Carg10249 vs. NCBI nr
Match: XP_022987144.1 (acyl carrier protein 4, chloroplastic-like [Cucurbita maxima])

HSP 1 Score: 261.5 bits (667), Expect = 1.7e-66
Identity = 143/146 (97.95%), Postives = 143/146 (97.95%), Query Frame = 0


Query: 1   MAMASFSSTCLRFRIPLNQAAKTNQN--QVLRRSSAGAGGLLKSNGFRLVTHRTSQSHLR 60
           MAMASFSSTCLRFRIPLNQAAKTNQN  QVLRRSSAGAGGLLKSNGF LVTHRTSQSHLR
Sbjct: 1   MAMASFSSTCLRFRIPLNQAAKTNQNQCQVLRRSSAGAGGLLKSNGFHLVTHRTSQSHLR 60

Query: 61  VSCAAKPETVDKVCSIVRKQLALPESSELTPESKFSALGADSLDTVEIIMTLEEEFSINI 120
           VSCAAKPETVDKVCSIVRKQLALPESSELTPESKFSALGADSLDTVEIIMTLEEEFSINI
Sbjct: 61  VSCAAKPETVDKVCSIVRKQLALPESSELTPESKFSALGADSLDTVEIIMTLEEEFSINI 120

Query: 121 EEDNAQNITTVQEAADLIEDLVVKQQ 145
           EEDNAQNITTVQEAADLIEDLVVKQQ
Sbjct: 121 EEDNAQNITTVQEAADLIEDLVVKQQ 146

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BLAST of Carg10249 vs. NCBI nr
Match: XP_022921630.1 (acyl carrier protein 4, chloroplastic-like [Cucurbita moschata])

HSP 1 Score: 260.8 bits (665), Expect = 2.8e-66
Identity = 143/146 (97.95%), Postives = 143/146 (97.95%), Query Frame = 0


Query: 1   MAMASFSSTCLRFRIPLNQAAKTNQN--QVLRRSSAGAGGLLKSNGFRLVTHRTSQSHLR 60
           MAMASFSSTCL FRIPLNQAAKTNQN  QVLRRSSAGAGGLLKSNGFRLVTHRTSQSHLR
Sbjct: 1   MAMASFSSTCLGFRIPLNQAAKTNQNQCQVLRRSSAGAGGLLKSNGFRLVTHRTSQSHLR 60

Query: 61  VSCAAKPETVDKVCSIVRKQLALPESSELTPESKFSALGADSLDTVEIIMTLEEEFSINI 120
           VSCAAKPETVDKVCSIVRKQLALPESSELTPESKFSALGADSLDTVEIIMTLEEEFSINI
Sbjct: 61  VSCAAKPETVDKVCSIVRKQLALPESSELTPESKFSALGADSLDTVEIIMTLEEEFSINI 120

Query: 121 EEDNAQNITTVQEAADLIEDLVVKQQ 145
           EEDNAQNITTVQEAADLIEDLVVKQQ
Sbjct: 121 EEDNAQNITTVQEAADLIEDLVVKQQ 146

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BLAST of Carg10249 vs. NCBI nr
Match: XP_023516582.1 (acyl carrier protein 4, chloroplastic-like [Cucurbita pepo subsp. pepo])

HSP 1 Score: 259.6 bits (662), Expect = 6.3e-66
Identity = 142/146 (97.26%), Postives = 143/146 (97.95%), Query Frame = 0


Query: 1   MAMASFSSTCLRFRIPLNQAAKTNQN--QVLRRSSAGAGGLLKSNGFRLVTHRTSQSHLR 60
           MAMASFSSTCLRFRIPLNQAAKT+QN  QVLRRSSAGAGGLLKSNGF LVTHRTSQSHLR
Sbjct: 1   MAMASFSSTCLRFRIPLNQAAKTDQNQCQVLRRSSAGAGGLLKSNGFHLVTHRTSQSHLR 60

Query: 61  VSCAAKPETVDKVCSIVRKQLALPESSELTPESKFSALGADSLDTVEIIMTLEEEFSINI 120
           VSCAAKPETVDKVCSIVRKQLALPESSELTPESKFSALGADSLDTVEIIMTLEEEFSINI
Sbjct: 61  VSCAAKPETVDKVCSIVRKQLALPESSELTPESKFSALGADSLDTVEIIMTLEEEFSINI 120

Query: 121 EEDNAQNITTVQEAADLIEDLVVKQQ 145
           EEDNAQNITTVQEAADLIEDLVVKQQ
Sbjct: 121 EEDNAQNITTVQEAADLIEDLVVKQQ 146

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BLAST of Carg10249 vs. NCBI nr
Match: XP_008464386.1 (PREDICTED: acyl carrier protein 4, chloroplastic [Cucumis melo] >ADN33862.1 acyl carrier protein [Cucumis melo subsp. melo])

HSP 1 Score: 201.8 bits (512), Expect = 1.6e-48
Identity = 114/142 (80.28%), Postives = 120/142 (84.51%), Query Frame = 0


Query: 3   MASFSSTCLRFRIPLNQAAKTNQNQVLRRSSAGAGGLLKSNGFRLVTHRTSQSHLRVSCA 62
           MASFS+T LRF IP+NQA K N NQ+LRRS  G G L  +N F          HLRVSCA
Sbjct: 1   MASFSATSLRFCIPINQANKMNHNQLLRRSFPGQGLLSNNNAF----------HLRVSCA 60

Query: 63  AKPETVDKVCSIVRKQLALPESSELTPESKFSALGADSLDTVEIIMTLEEEFSINIEEDN 122
           AKPETVDKVCSIVRKQLALPE+SELTPESKF+ALGADSLDTVEIIMTLEEEFSINIEEDN
Sbjct: 61  AKPETVDKVCSIVRKQLALPETSELTPESKFAALGADSLDTVEIIMTLEEEFSINIEEDN 120

Query: 123 AQNITTVQEAADLIEDLVVKQQ 145
           AQNITTVQEAADLIEDLVVKQQ
Sbjct: 121 AQNITTVQEAADLIEDLVVKQQ 132

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BLAST of Carg10249 vs. NCBI nr
Match: XP_004138024.1 (PREDICTED: acyl carrier protein 4, chloroplastic [Cucumis sativus] >KGN63443.1 Acyl carrier protein [Cucumis sativus])

HSP 1 Score: 196.1 bits (497), Expect = 8.5e-47
Identity = 110/142 (77.46%), Postives = 119/142 (83.80%), Query Frame = 0


Query: 3   MASFSSTCLRFRIPLNQAAKTNQNQVLRRSSAGAGGLLKSNGFRLVTHRTSQSHLRVSCA 62
           MASFS+T LRF +P+NQA K N NQ+LRRS  G G L  +N F          H RVSCA
Sbjct: 1   MASFSATSLRFCMPINQANKMNHNQLLRRSLLGRGFLNNNNAF----------HFRVSCA 60

Query: 63  AKPETVDKVCSIVRKQLALPESSELTPESKFSALGADSLDTVEIIMTLEEEFSINIEEDN 122
           AKPET+DKVCSIVRKQLALPE+SELTPESKF+ALGADSLDTVEIIMTLEEEFSINIEEDN
Sbjct: 61  AKPETLDKVCSIVRKQLALPETSELTPESKFAALGADSLDTVEIIMTLEEEFSINIEEDN 120

Query: 123 AQNITTVQEAADLIEDLVVKQQ 145
           AQNITTVQEAADLIE+LVVKQQ
Sbjct: 121 AQNITTVQEAADLIENLVVKQQ 132

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BLAST of Carg10249 vs. TAIR10
Match: AT4G25050.2 (acyl carrier protein 4)

HSP 1 Score: 121.3 bits (303), Expect = 4.8e-28
Identity = 80/153 (52.29%), Postives = 99/153 (64.71%), Query Frame = 0


Query: 3   MASFSSTCLRFRIPLNQAAKTNQNQVLRRSSAGAGGLLKSNGFRLVTHRTSQSHLRVSCA 62
           MAS S+T L F+ P      T  +QVLR++S+      +S  F   T  T    L++SCA
Sbjct: 1   MASLSTTSLSFKAP-----STTISQVLRKASSS-----QSVTFGRFTSSTKSLRLQISCA 60

Query: 63  AKPETVDKVCSIVRKQLALPESSELTPESKFSALGADSLDT------------VEIIMTL 122
           AK ETV KV  IV++QLAL     LT ESKFSALGADSLDT            VEI+M L
Sbjct: 61  AKAETVQKVSDIVKEQLALAADVPLTAESKFSALGADSLDTVCYTLSVSYHCHVEIVMAL 120

Query: 123 EEEFSINIEEDNAQNITTVQEAADLIEDLVVKQ 144
           EE+F+I++EE +AQNITT+QEAADLIEDLV K+
Sbjct: 121 EEKFNISVEESDAQNITTIQEAADLIEDLVQKK 143

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BLAST of Carg10249 vs. TAIR10
Match: AT1G54580.1 (acyl carrier protein 2)

HSP 1 Score: 111.7 bits (278), Expect = 3.8e-25
Identity = 58/93 (62.37%), Postives = 76/93 (81.72%), Query Frame = 0


Query: 51  RTSQSHLRVSCAAKPETVDKVCSIVRKQLALPESSELTPESKFSALGADSLDTVEIIMTL 110
           R   + L VSCAAKPETVDKVC++VRKQL+L E+ E+T  +KF+ALGADSLDTVEI+M L
Sbjct: 42  RQLPTRLTVSCAAKPETVDKVCAVVRKQLSLKEADEITAATKFAALGADSLDTVEIVMGL 101

Query: 111 EEEFSINIEEDNAQNITTVQEAADLIEDLVVKQ 144
           EEEF I + E+ AQ+I TV++AA LIE+L+ ++
Sbjct: 102 EEEFGIEMAEEKAQSIATVEQAAALIEELLFEK 134

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BLAST of Carg10249 vs. TAIR10
Match: AT1G54630.1 (acyl carrier protein 3)

HSP 1 Score: 110.2 bits (274), Expect = 1.1e-24
Identity = 57/93 (61.29%), Postives = 76/93 (81.72%), Query Frame = 0


Query: 51  RTSQSHLRVSCAAKPETVDKVCSIVRKQLALPESSELTPESKFSALGADSLDTVEIIMTL 110
           R   + L V CAAKPETVDKVC++VRKQL+L E+ E+T  +KF+ALGADSLDTVEI+M L
Sbjct: 42  RQLPTRLTVYCAAKPETVDKVCAVVRKQLSLKEADEITAATKFAALGADSLDTVEIVMGL 101

Query: 111 EEEFSINIEEDNAQNITTVQEAADLIEDLVVKQ 144
           EEEF I + E+ AQ+I TV++AA LIE+L++++
Sbjct: 102 EEEFGIEMAEEKAQSIATVEQAAALIEELLLEK 134

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BLAST of Carg10249 vs. TAIR10
Match: AT5G27200.1 (acyl carrier protein 5)

HSP 1 Score: 100.5 bits (249), Expect = 8.8e-22
Identity = 64/137 (46.72%), Postives = 84/137 (61.31%), Query Frame = 0


Query: 4   ASFSSTCLRFRIPLNQAAKTNQNQVLRRSSAGAGGLLKSNGFRLVTHRTSQSHLRVSCAA 63
           A FS+T  RF   LN+ A    N+             K+N       R   + L VSCA 
Sbjct: 13  APFSATTTRF--CLNKQATIFNNE-------------KTNNLSFSLRRLMPARLAVSCAV 72

Query: 64  KPETVDKVCSIVRKQLALPESSELTPESKFSALGADSLDTVEIIMTLEEEFSINIEEDNA 123
           K ETV+KV  IV+KQL+L +  ++T  +KF+ LGADSLDTVEI+M LEEEF I + E+ A
Sbjct: 73  KQETVEKVSEIVKKQLSLTDDQKVTAGTKFTELGADSLDTVEIVMGLEEEFGITMAEERA 132

Query: 124 QNITTVQEAADLIEDLV 141
           + I TVQ+AA+LIE+LV
Sbjct: 133 KEIATVQQAAELIEELV 134

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BLAST of Carg10249 vs. TAIR10
Match: AT3G05020.1 (acyl carrier protein 1)

HSP 1 Score: 97.1 bits (240), Expect = 9.8e-21
Identity = 50/84 (59.52%), Postives = 68/84 (80.95%), Query Frame = 0


Query: 57  LRVSCAAKPETVDKVCSIVRKQLALPESSELTPESKFSALGADSLDTVEIIMTLEEEFSI 116
           L VSCAAK ET++KV +IV+KQL+L    ++  E+KF+ LGADSLDTVEI+M LEEEF+I
Sbjct: 50  LSVSCAAKQETIEKVSAIVKKQLSLTPDKKVVAETKFADLGADSLDTVEIVMGLEEEFNI 109

Query: 117 NIEEDNAQNITTVQEAADLIEDLV 141
            + E+ AQ I TV++AA+LIE+L+
Sbjct: 110 QMAEEKAQKIATVEQAAELIEELI 133

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BLAST of Carg10249 vs. Swiss-Prot
Match: sp|Q9SW21|ACP4_ARATH (Acyl carrier protein 4, chloroplastic OS=Arabidopsis thaliana OX=3702 GN=ACP4 PE=2 SV=1)

HSP 1 Score: 130.2 bits (326), Expect = 1.9e-29
Identity = 80/141 (56.74%), Postives = 99/141 (70.21%), Query Frame = 0


Query: 3   MASFSSTCLRFRIPLNQAAKTNQNQVLRRSSAGAGGLLKSNGFRLVTHRTSQSHLRVSCA 62
           MAS S+T L F+ P      T  +QVLR++S+      +S  F   T  T    L++SCA
Sbjct: 1   MASLSTTSLSFKAP-----STTISQVLRKASSS-----QSVTFGRFTSSTKSLRLQISCA 60

Query: 63  AKPETVDKVCSIVRKQLALPESSELTPESKFSALGADSLDTVEIIMTLEEEFSINIEEDN 122
           AK ETV KV  IV++QLAL     LT ESKFSALGADSLDTVEI+M LEE+F+I++EE +
Sbjct: 61  AKAETVQKVSDIVKEQLALAADVPLTAESKFSALGADSLDTVEIVMALEEKFNISVEESD 120

Query: 123 AQNITTVQEAADLIEDLVVKQ 144
           AQNITT+QEAADLIEDLV K+
Sbjct: 121 AQNITTIQEAADLIEDLVQKK 131

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BLAST of Carg10249 vs. Swiss-Prot
Match: sp|P93092|ACP1_CASGL (Acyl carrier protein 1, chloroplastic OS=Casuarina glauca OX=3522 GN=ACP1 PE=2 SV=1)

HSP 1 Score: 119.8 bits (299), Expect = 2.5e-26
Identity = 62/93 (66.67%), Postives = 77/93 (82.80%), Query Frame = 0


Query: 51  RTSQSHLRVSCAAKPETVDKVCSIVRKQLALPESSELTPESKFSALGADSLDTVEIIMTL 110
           R   +   V CAAKPETV+KVC+IV+KQLALP+ S +T ESKF+ LGADSLDTVEI+M L
Sbjct: 42  RMRSARFVVCCAAKPETVEKVCAIVKKQLALPDDSAVTGESKFATLGADSLDTVEIVMGL 101

Query: 111 EEEFSINIEEDNAQNITTVQEAADLIEDLVVKQ 144
           EEEF IN+EE++AQ+I TVQ+AADLIE L+ K+
Sbjct: 102 EEEFGINVEEESAQSIATVQDAADLIEKLIEKK 134

[Close]

BLAST of Carg10249 vs. Swiss-Prot
Match: sp|P52411|ACP1_CUPLA (Acyl carrier protein 1, chloroplastic OS=Cuphea lanceolata OX=3930 GN=ACL1.1 PE=2 SV=1)

HSP 1 Score: 118.2 bits (295), Expect = 7.4e-26
Identity = 63/87 (72.41%), Postives = 75/87 (86.21%), Query Frame = 0


Query: 57  LRVSCAAKPETVDKVCSIVRKQLALPESSELTPESKFSALGADSLDTVEIIMTLEEEFSI 116
           LRVSC AKPETV KVC IV+KQLALP+ SE+   SKFSALGADSLDTVEI+M LEEEF I
Sbjct: 52  LRVSCQAKPETVAKVCGIVKKQLALPDDSEVNGLSKFSALGADSLDTVEIVMGLEEEFGI 111

Query: 117 NIEEDNAQNITTVQEAADLIEDLVVKQ 144
           ++EE++AQ+I TVQ+AADLIE L+ K+
Sbjct: 112 SVEEESAQSIQTVQDAADLIEKLMEKK 138

[Close]

BLAST of Carg10249 vs. Swiss-Prot
Match: sp|P52412|ACP2_CUPLA (Acyl carrier protein 2, chloroplastic OS=Cuphea lanceolata OX=3930 GN=ACL1.2 PE=2 SV=1)

HSP 1 Score: 117.5 bits (293), Expect = 1.3e-25
Identity = 62/93 (66.67%), Postives = 78/93 (83.87%), Query Frame = 0


Query: 51  RTSQSHLRVSCAAKPETVDKVCSIVRKQLALPESSELTPESKFSALGADSLDTVEIIMTL 110
           R     LRV+C AKPETV KVC+IV+KQLALP+ S+++  SKFSALGADSLDTVEI+M L
Sbjct: 43  RRGSFSLRVNCQAKPETVTKVCNIVKKQLALPDDSDVSGVSKFSALGADSLDTVEIVMGL 102

Query: 111 EEEFSINIEEDNAQNITTVQEAADLIEDLVVKQ 144
           EEEF I++EE++AQ+I TVQ+AADLIE L+ K+
Sbjct: 103 EEEFGISVEEESAQSIQTVQDAADLIEKLMEKK 135

[Close]

BLAST of Carg10249 vs. Swiss-Prot
Match: sp|P52414|ACP4_CUPLA (Acyl carrier protein 4, chloroplastic OS=Cuphea lanceolata OX=3930 GN=ACL1 PE=3 SV=1)

HSP 1 Score: 117.1 bits (292), Expect = 1.6e-25
Identity = 63/89 (70.79%), Postives = 75/89 (84.27%), Query Frame = 0


Query: 55  SHLRVSCAAKPETVDKVCSIVRKQLALPESSELTPESKFSALGADSLDTVEIIMTLEEEF 114
           S  RVSC AKPETV KVC IV+KQLALP+ SE+   SKFSALGADSLDTVEI+M LEEEF
Sbjct: 49  SFARVSCQAKPETVAKVCRIVKKQLALPDDSEVNGLSKFSALGADSLDTVEIVMGLEEEF 108

Query: 115 SINIEEDNAQNITTVQEAADLIEDLVVKQ 144
            I++EE++AQ+I TVQ+AADLIE L+ K+
Sbjct: 109 GISVEEESAQSIQTVQDAADLIEKLMEKK 137

[Close]

BLAST of Carg10249 vs. TrEMBL
Match: tr|A0A1S3CLC5|A0A1S3CLC5_CUCME (Acyl carrier protein OS=Cucumis melo OX=3656 GN=LOC103502288 PE=3 SV=1)

HSP 1 Score: 201.8 bits (512), Expect = 1.0e-48
Identity = 114/142 (80.28%), Postives = 120/142 (84.51%), Query Frame = 0


Query: 3   MASFSSTCLRFRIPLNQAAKTNQNQVLRRSSAGAGGLLKSNGFRLVTHRTSQSHLRVSCA 62
           MASFS+T LRF IP+NQA K N NQ+LRRS  G G L  +N F          HLRVSCA
Sbjct: 1   MASFSATSLRFCIPINQANKMNHNQLLRRSFPGQGLLSNNNAF----------HLRVSCA 60

Query: 63  AKPETVDKVCSIVRKQLALPESSELTPESKFSALGADSLDTVEIIMTLEEEFSINIEEDN 122
           AKPETVDKVCSIVRKQLALPE+SELTPESKF+ALGADSLDTVEIIMTLEEEFSINIEEDN
Sbjct: 61  AKPETVDKVCSIVRKQLALPETSELTPESKFAALGADSLDTVEIIMTLEEEFSINIEEDN 120

Query: 123 AQNITTVQEAADLIEDLVVKQQ 145
           AQNITTVQEAADLIEDLVVKQQ
Sbjct: 121 AQNITTVQEAADLIEDLVVKQQ 132

[Close]

BLAST of Carg10249 vs. TrEMBL
Match: tr|E5GBM2|E5GBM2_CUCME (Acyl carrier protein OS=Cucumis melo subsp. melo OX=412675 PE=3 SV=1)

HSP 1 Score: 201.8 bits (512), Expect = 1.0e-48
Identity = 114/142 (80.28%), Postives = 120/142 (84.51%), Query Frame = 0


Query: 3   MASFSSTCLRFRIPLNQAAKTNQNQVLRRSSAGAGGLLKSNGFRLVTHRTSQSHLRVSCA 62
           MASFS+T LRF IP+NQA K N NQ+LRRS  G G L  +N F          HLRVSCA
Sbjct: 1   MASFSATSLRFCIPINQANKMNHNQLLRRSFPGQGLLSNNNAF----------HLRVSCA 60

Query: 63  AKPETVDKVCSIVRKQLALPESSELTPESKFSALGADSLDTVEIIMTLEEEFSINIEEDN 122
           AKPETVDKVCSIVRKQLALPE+SELTPESKF+ALGADSLDTVEIIMTLEEEFSINIEEDN
Sbjct: 61  AKPETVDKVCSIVRKQLALPETSELTPESKFAALGADSLDTVEIIMTLEEEFSINIEEDN 120

Query: 123 AQNITTVQEAADLIEDLVVKQQ 145
           AQNITTVQEAADLIEDLVVKQQ
Sbjct: 121 AQNITTVQEAADLIEDLVVKQQ 132

[Close]

BLAST of Carg10249 vs. TrEMBL
Match: tr|A0A0A0LNR6|A0A0A0LNR6_CUCSA (Acyl carrier protein OS=Cucumis sativus OX=3659 GN=Csa_1G000670 PE=3 SV=1)

HSP 1 Score: 196.1 bits (497), Expect = 5.6e-47
Identity = 110/142 (77.46%), Postives = 119/142 (83.80%), Query Frame = 0


Query: 3   MASFSSTCLRFRIPLNQAAKTNQNQVLRRSSAGAGGLLKSNGFRLVTHRTSQSHLRVSCA 62
           MASFS+T LRF +P+NQA K N NQ+LRRS  G G L  +N F          H RVSCA
Sbjct: 1   MASFSATSLRFCMPINQANKMNHNQLLRRSLLGRGFLNNNNAF----------HFRVSCA 60

Query: 63  AKPETVDKVCSIVRKQLALPESSELTPESKFSALGADSLDTVEIIMTLEEEFSINIEEDN 122
           AKPET+DKVCSIVRKQLALPE+SELTPESKF+ALGADSLDTVEIIMTLEEEFSINIEEDN
Sbjct: 61  AKPETLDKVCSIVRKQLALPETSELTPESKFAALGADSLDTVEIIMTLEEEFSINIEEDN 120

Query: 123 AQNITTVQEAADLIEDLVVKQQ 145
           AQNITTVQEAADLIE+LVVKQQ
Sbjct: 121 AQNITTVQEAADLIENLVVKQQ 132

[Close]

BLAST of Carg10249 vs. TrEMBL
Match: tr|A0A059BF77|A0A059BF77_EUCGR (Acyl carrier protein OS=Eucalyptus grandis OX=71139 GN=EUGRSUZ_G01960 PE=3 SV=1)

HSP 1 Score: 144.8 bits (364), Expect = 1.5e-31
Identity = 85/141 (60.28%), Postives = 102/141 (72.34%), Query Frame = 0


Query: 3   MASFSSTCLRFRIPLNQAAKTNQNQVLRRSSAGAGGLLKSNGFRLVTHRTSQSHLRVSCA 62
           MAS S+  + FR     + K+N+   L+  S G     + NGF  +      S  RVSCA
Sbjct: 1   MASVSAASVTFRALSKPSLKSNETSSLKVVSLG----WRKNGFPSL----RSSRFRVSCA 60

Query: 63  AKPETVDKVCSIVRKQLALPESSELTPESKFSALGADSLDTVEIIMTLEEEFSINIEEDN 122
           AKPETVDKVC IVRKQLALP  +ELTPESKFSA+GADSLDTVEI+M LEEEF I++EE++
Sbjct: 61  AKPETVDKVCEIVRKQLALPAEAELTPESKFSAIGADSLDTVEIVMALEEEFDISVEEES 120

Query: 123 AQNITTVQEAADLIEDLVVKQ 144
           +QNITTVQEAADLIE LV K+
Sbjct: 121 SQNITTVQEAADLIEKLVQKK 133

[Close]

BLAST of Carg10249 vs. TrEMBL
Match: tr|A0A059BDY2|A0A059BDY2_EUCGR (Acyl carrier protein OS=Eucalyptus grandis OX=71139 GN=EUGRSUZ_G01960 PE=3 SV=1)

HSP 1 Score: 140.2 bits (352), Expect = 3.7e-30
Identity = 85/142 (59.86%), Postives = 102/142 (71.83%), Query Frame = 0


Query: 3   MASFSSTCLRFRIPLNQAAKTNQNQVLRRSSAGAGGLLKSNGFRLVTHRTSQSHLRVSCA 62
           MAS S+  + FR     + K+N+   L+  S G     + NGF  +      S  RVSCA
Sbjct: 1   MASVSAASVTFRALSKPSLKSNETSSLKVVSLG----WRKNGFPSL----RSSRFRVSCA 60

Query: 63  -AKPETVDKVCSIVRKQLALPESSELTPESKFSALGADSLDTVEIIMTLEEEFSINIEED 122
            AKPETVDKVC IVRKQLALP  +ELTPESKFSA+GADSLDTVEI+M LEEEF I++EE+
Sbjct: 61  QAKPETVDKVCEIVRKQLALPAEAELTPESKFSAIGADSLDTVEIVMALEEEFDISVEEE 120

Query: 123 NAQNITTVQEAADLIEDLVVKQ 144
           ++QNITTVQEAADLIE LV K+
Sbjct: 121 SSQNITTVQEAADLIEKLVQKK 134

The following BLAST results are available for this feature:

BLAST of Carg10249 vs. NCBI nr


Match Name	E-value	Identity	Description
XP_022987144.1	1.7e-66	97.95	acyl carrier protein 4, chloroplastic-like [Cucurbita maxima]	[more]
XP_022921630.1	2.8e-66	97.95	acyl carrier protein 4, chloroplastic-like [Cucurbita moschata]	[more]
XP_023516582.1	6.3e-66	97.26	acyl carrier protein 4, chloroplastic-like [Cucurbita pepo subsp. pepo]	[more]
XP_008464386.1	1.6e-48	80.28	PREDICTED: acyl carrier protein 4, chloroplastic [Cucumis melo] >ADN33862.1 acyl...	[more]
XP_004138024.1	8.5e-47	77.46	PREDICTED: acyl carrier protein 4, chloroplastic [Cucumis sativus] >KGN63443.1 A...	[more]

BLAST of Carg10249 vs. TAIR10


Match Name	E-value	Identity	Description
AT4G25050.2	4.8e-28	52.29	acyl carrier protein 4	[more]
AT1G54580.1	3.8e-25	62.37	acyl carrier protein 2	[more]
AT1G54630.1	1.1e-24	61.29	acyl carrier protein 3	[more]
AT5G27200.1	8.8e-22	46.72	acyl carrier protein 5	[more]
AT3G05020.1	9.8e-21	59.52	acyl carrier protein 1	[more]

BLAST of Carg10249 vs. Swiss-Prot


Match Name	E-value	Identity	Description
sp\|Q9SW21\|ACP4_ARATH	1.9e-29	56.74	Acyl carrier protein 4, chloroplastic OS=Arabidopsis thaliana OX=3702 GN=ACP4 PE...	[more]
sp\|P93092\|ACP1_CASGL	2.5e-26	66.67	Acyl carrier protein 1, chloroplastic OS=Casuarina glauca OX=3522 GN=ACP1 PE=2 S...	[more]
sp\|P52411\|ACP1_CUPLA	7.4e-26	72.41	Acyl carrier protein 1, chloroplastic OS=Cuphea lanceolata OX=3930 GN=ACL1.1 PE=...	[more]
sp\|P52412\|ACP2_CUPLA	1.3e-25	66.67	Acyl carrier protein 2, chloroplastic OS=Cuphea lanceolata OX=3930 GN=ACL1.2 PE=...	[more]
sp\|P52414\|ACP4_CUPLA	1.6e-25	70.79	Acyl carrier protein 4, chloroplastic OS=Cuphea lanceolata OX=3930 GN=ACL1 PE=3 ...	[more]

BLAST of Carg10249 vs. TrEMBL


Match Name	E-value	Identity	Description
tr\|A0A1S3CLC5\|A0A1S3CLC5_CUCME	1.0e-48	80.28	Acyl carrier protein OS=Cucumis melo OX=3656 GN=LOC103502288 PE=3 SV=1	[more]
tr\|E5GBM2\|E5GBM2_CUCME	1.0e-48	80.28	Acyl carrier protein OS=Cucumis melo subsp. melo OX=412675 PE=3 SV=1	[more]
tr\|A0A0A0LNR6\|A0A0A0LNR6_CUCSA	5.6e-47	77.46	Acyl carrier protein OS=Cucumis sativus OX=3659 GN=Csa_1G000670 PE=3 SV=1	[more]
tr\|A0A059BF77\|A0A059BF77_EUCGR	1.5e-31	60.28	Acyl carrier protein OS=Eucalyptus grandis OX=71139 GN=EUGRSUZ_G01960 PE=3 SV=1	[more]
tr\|A0A059BDY2\|A0A059BDY2_EUCGR	3.7e-30	59.86	Acyl carrier protein OS=Eucalyptus grandis OX=71139 GN=EUGRSUZ_G01960 PE=3 SV=1	[more]

Annotated Terms

The following terms have been associated with this gene:

Vocabulary: **Biological Process**
Term	Definition
GO:0006633	fatty acid biosynthetic process

Vocabulary: **Molecular Function**
Term	Definition
GO:0031177	phosphopantetheine binding

Vocabulary: **INTERPRO**
Term	Definition
IPR006162	Ppantetheine_attach_site
IPR009081	PP-bd_ACP
IPR003231	Acyl_carrier
IPR036736	ACP-like_sf
IPR020806	PKS_PP-bd

GO Annotation

GO Assignments

This gene is annotated with the following GO terms.

Category	Term Accession	Term Name
biological_process	GO:0006633	fatty acid biosynthetic process
cellular_component	GO:0005575	cellular_component
molecular_function	GO:0031177	phosphopantetheine binding

Relationships

The following mRNA feature(s) are a part of this gene:


Feature Name	Unique Name	Type
Carg10249-RA	Carg10249-RA	mRNA

InterPro

Analysis Name: InterPro Annotations of silver-seed gourd
Date Performed: 2019-03-07


IPR Term	IPR Description	Source	Source Term	Source Description	Alignment
IPR020806	Polyketide synthase, phosphopantetheine-binding domain	SMART	SM00823	PKS_PP	coord: 68..140 e-value: 0.0092 score: 17.3
IPR036736	ACP-like superfamily	GENE3D	G3DSA:1.10.1200.10		coord: 63..143 e-value: 4.1E-24 score: 86.6
IPR036736	ACP-like superfamily	SUPERFAMILY	SSF47336	ACP-like	coord: 65..140
IPR003231	Acyl carrier protein (ACP)	TIGRFAM	TIGR00517	TIGR00517	coord: 66..138 e-value: 2.6E-22 score: 76.5
IPR003231	Acyl carrier protein (ACP)	PRODOM	PD000887		coord: 97..137 e-value: 1.0E-11 score: 165.0
IPR003231	Acyl carrier protein (ACP)	HAMAP	MF_01217	Acyl_carrier	coord: 66..140 score: 17.128
IPR009081	Phosphopantetheine binding ACP domain	PFAM	PF00550	PP-binding	coord: 69..136 e-value: 2.8E-12 score: 46.7
IPR009081	Phosphopantetheine binding ACP domain	PROSITE	PS50075	CARRIER	coord: 65..140 score: 21.325
None	No IPR available	PANTHER	PTHR20863	ACYL CARRIER PROTEIN/ZINC FINGER PROTEIN 593-RELATED	coord: 42..143
None	No IPR available	PANTHER	PTHR20863:SF29	ACYL CARRIER PROTEIN 1, CHLOROPLASTIC-RELATED	coord: 42..143
IPR006162	Phosphopantetheine attachment site	PROSITE	PS00012	PHOSPHOPANTETHEINE	coord: 95..110

Synteny

The following gene(s) are orthologous to this gene:


Gene	Orthologue	Organism	Block
Carg10249	Cla019314	Watermelon (97103) v1	carwmB0356
Carg10249	Csa1G000670	Cucumber (Chinese Long) v2	carcuB0391
Carg10249	MELO3C026170	Melon (DHL92) v3.5.1	carmeB0369
Carg10249	ClCG06G018280	Watermelon (Charleston Gray)	carwcgB0357
Carg10249	CSPI01G00170	Wild cucumber (PI 183967)	carcpiB0396
Carg10249	Cucsa.156980	Cucumber (Gy14) v1	carcgyB0422
Carg10249	CmaCh10G000250	Cucurbita maxima (Rimu)	carcmaB0510
Carg10249	CmoCh10G000230	Cucurbita moschata (Rifu)	carcmoB0493
Carg10249	Lsi06G016750	Bottle gourd (USVL1VR-Ls)	carlsiB331
Carg10249	Cp4.1LG18g09290	Cucurbita pepo (Zucchini)	carcpeB0508
Carg10249	CsGy1G000150	Cucumber (Gy14) v2	carcgybB0371
Carg10249	MELO3C026170.2	Melon (DHL92) v3.6.1	carmedB0375
Carg10249	CsaV3_1G000160	Cucumber (Chinese Long) v3	carcucB0395
Carg10249	Cla97C06G128040	Watermelon (97103) v2	carwmbB0382
Carg10249	Bhi02G000477	Wax gourd	carwgoB0448

The following gene(s) are paralogous to this gene:

None

The following block(s) are covering this gene:


Gene	Organism	Block
Carg10249	Silver-seed gourd	carcarB012
Carg10249	Silver-seed gourd	carcarB387
Carg10249	Silver-seed gourd	carcarB388
Carg10249	Silver-seed gourd	carcarB391
Carg10249	Cucurbita maxima (Rimu)	carcmaB0511
Carg10249	Cucurbita maxima (Rimu)	carcmaB0513
Carg10249	Cucurbita moschata (Rifu)	carcmoB0494
Carg10249	Cucurbita moschata (Rifu)	carcmoB0495
Carg10249	Cucurbita pepo (Zucchini)	carcpeB0513
Carg10249	Cucurbita pepo (Zucchini)	carcpeB0514