CmaCh10G000250.1 (mRNA) Cucurbita maxima (Rimu) | Cucurbit Genomics Database (CuGenDB)

Overview


Name	CmaCh10G000250.1
Type	mRNA
Organism	Cucurbita maxima (Cucurbita maxima (Rimu))
Description	Acyl carrier protein
Location	Cma_Chr10 : 96760 .. 98808 (-)
Sequence length	1703

Genome Viewer

Sequences

The following sequences are available for this feature:

Gene sequence (with intron)

Legend: exonfive_prime_UTRCDSthree_prime_UTR

Hold the cursor over a type above to highlight its positions in the sequence below.

TCTTTCGACAGAGCCATTAAAGTTGCCTTCTTGCTTCCAGGTAACTCTTAATTACTCCTATCCCCCTTCTTCTTCTTCTTCCCTACACTGATCTCTCTCACTAAGACACAATAAATATGGATCTTGCTATAAAAACGGCCCCCAAATTGGAGTCTGTGCGGTGATTTTGATTATGTTCGCACATAATGAGCTTATATATAATCAATGGCAGCGGAAATTGTTATTTAGAAGAAAAAAGATCGAGAATTTCTCATGGCTTTCCCTGTTTTGCGCGCTCTTTATAGGCATTGGCTGTTAGGCATCTGGACATCCCTCAAACACGAACCAACACACGTAACTTAAAACCTGGATTTAATTTATGGAGGACGTGTGGCCACTGGCAAGGCAGTGAAGGCCTGAAAAAATGTCATTCATAGATCATAATTCAGACTAGCCATAATCAGTCTCTTCATGATTCCTTTTAAGTTAAAAATGCTCAATTTGTATCAATATCAACCAAAGAAAGAAAAGAAAAAAAGGCTTGGCTATTTAAAAAATTTGTGGGTCCAAGGCATTCTAGTGTCGCATAATAGACTGAGCAGACAAATTCTGAAATTGTTAATTATACTTTTAGTCCTTCAGGTGTTCATCATTTTTAAAAATAAAATAAATAATCGAAGTATCAAAAACAAGTACAGATTTTTTAATATACATCAAGACAATCATATATGATGAATGTATTATCGAAGAATTTGTTTGAGGTGTGTGAGTGTGTCAGATTGGGGGCAGTGTGTAGATAGGATTTGATAAAATGGATTGAGGGAGCGGCAACGTCCGCCACTCGTTCCTCATTTCCATTTTCCACAGTTTAAAGAGCTCCAACCAACAAGACTACTTTATCCAATCCCTTCCCCCAACTCCTTTTGTTCTGGTCTTGAAGTTTATTATACTGTATTCCCTCGTATTCCATCAAACTCTCTCTAATGGCAATGGCTTCCTTTTCATCTACTTGCCTCAGATTCCGCATACCTCTCAACCAAGCTGCCAAGACCAACCAGAACCAGGTATTCTCTGGACATCCCACTCCACTGCATATTTATTGCATTCTATGTACAGTTCCCTAAGTGAAATTGATATTATTGTATGCTGCTTCTGGCAGTGTCAGGTTCTCAGAAGAAGCTCCGCCGGGGCCGGTGGATTGCTCAAGAGTAATGGTTTCCATCTTGTCACTCACAGAACCTCCCAATCCCACCTGCGTGTCTCTTGTGCGGTAATTTCGGCATTTTCATTTGCTAATTAACTCACTTTGCTGTTACCTTTTGTTTGTTGTGTGAATTGGGTTTGAAAGTTAATTGGTAAATTTATGAAATGGAATGGACAGGCAAAACCAGAAACAGTTGATAAGGTGTGTTCAATTGTGAGGAAACAATTGGCTTTGCCTGAAAGCTCAGAGCTCACCCCTGAATCCAAGTTCTCAGCTCTTGGTGCCGACTCCCTCGACACAGTACGCCTTTTCCATAACCTTCCCCAAACAAAACATCACACTAATCTTCTTCATACTTCTGTTTCCCTTATTATATATAATTACGGTTCTGTTCATTGCCCCATTTGACAAAATCAAATATAATGTTGGCATGGCCACAGGTGGAGATTATTATGACCTTGGAGGAAGAATTTAGCATCAATATCGAAGAGGATAACGCTCAGAACATAACGACAGTACAAGAAGCTGCCGATTTGATTGAGGACCTTGTTGTTAAGCAGCAATCTTAACTCTTAAGCTACCAAAGACTAGCTTTTGGTAAGTTAAAGTTGTATTATTCCGAGAGGCAGATGATAAGAGTTGGGTTGAGTAGGCAGGATGTTATTTTTTCACCTTGAATGATTTTTTAAAGCAAATTAATGTACTTGTACTCGTGGAATTTATGAACAAAAACCATTTTCGATTTGTTTTTCAATCTGTACAAGTTCAACTTGTTAGCTTGAAATTAATGCAATATGAAGCATAGTGTCGTGTTGCTTTCTTCTCCCAAACTGAGGGGCTGGATCAATCTATTTCATGGATTGCAG

mRNA sequence

TCTTTCGACAGAGCCATTAAAGTTGCCTTCTTGCTTCCAGGTAACTCTTAATTACTCCTATCCCCCTTCTTCTTCTTCTTCCCTACACTGATCTCTCTCACTAAGACACAATAAATATGGATCTTGCTATAAAAACGGCCCCCAAATTGGAGTCTGTGCGGTGATTTTGATTATGTTCGCACATAATGAGCTTATATATAATCAATGGCAGCGGAAATTGTTATTTAGAAGAAAAAAGATCGAGAATTTCTCATGGCTTTCCCTGTTTTGCGCGCTCTTTATAGGCATTGGCTGTTAGGCATCTGGACATCCCTCAAACACGAACCAACACACGTAACTTAAAACCTGGATTTAATTTATGGAGGACGTGTGGCCACTGGCAAGGCAGTGAAGGCCTGAAAAAATGTCATTCATAGATCATAATTCAGACTAGCCATAATCAGTCTCTTCATGATTCCTTTTAAGTTAAAAATGCTCAATTTGTATCAATATCAACCAAAGAAAGAAAAGAAAAAAAGGCTTGGCTATTTAAAAAATTTGTGGGTCCAAGGCATTCTAGTGTCGCATAATAGACTGAGCAGACAAATTCTGAAATTGTTAATTATACTTTTAGTCCTTCAGGTGTTCATCATTTTTAAAAATAAAATAAATAATCGAAGTATCAAAAACAAGTACAGATTTTTTAATATACATCAAGACAATCATATATGATGAATGTATTATCGAAGAATTTGTTTGAGGTGTGTGAGTGTGTCAGATTGGGGGCAGTGTGTAGATAGGATTTGATAAAATGGATTGAGGGAGCGGCAACGTCCGCCACTCGTTCCTCATTTCCATTTTCCACAGTTTAAAGAGCTCCAACCAACAAGACTACTTTATCCAATCCCTTCCCCCAACTCCTTTTGTTCTGGTCTTGAAGTTTATTATACTGTATTCCCTCGTATTCCATCAAACTCTCTCTAATGGCAATGGCTTCCTTTTCATCTACTTGCCTCAGATTCCGCATACCTCTCAACCAAGCTGCCAAGACCAACCAGAACCAGTGTCAGGTTCTCAGAAGAAGCTCCGCCGGGGCCGGTGGATTGCTCAAGAGTAATGGTTTCCATCTTGTCACTCACAGAACCTCCCAATCCCACCTGCGTGTCTCTTGTGCGGCAAAACCAGAAACAGTTGATAAGGTGTGTTCAATTGTGAGGAAACAATTGGCTTTGCCTGAAAGCTCAGAGCTCACCCCTGAATCCAAGTTCTCAGCTCTTGGTGCCGACTCCCTCGACACAGTGGAGATTATTATGACCTTGGAGGAAGAATTTAGCATCAATATCGAAGAGGATAACGCTCAGAACATAACGACAGTACAAGAAGCTGCCGATTTGATTGAGGACCTTGTTGTTAAGCAGCAATCTTAACTCTTAAGCTACCAAAGACTAGCTTTTGGTAAGTTAAAGTTGTATTATTCCGAGAGGCAGATGATAAGAGTTGGGTTGAGTAGGCAGGATGTTATTTTTTCACCTTGAATGATTTTTTAAAGCAAATTAATGTACTTGTACTCGTGGAATTTATGAACAAAAACCATTTTCGATTTGTTTTTCAATCTGTACAAGTTCAACTTGTTAGCTTGAAATTAATGCAATATGAAGCATAGTGTCGTGTTGCTTTCTTCTCCCAAACTGAGGGGCTGGATCAATCTATTTCATGGATTGCAG

Coding sequence (CDS)

ATGGCAATGGCTTCCTTTTCATCTACTTGCCTCAGATTCCGCATACCTCTCAACCAAGCTGCCAAGACCAACCAGAACCAGTGTCAGGTTCTCAGAAGAAGCTCCGCCGGGGCCGGTGGATTGCTCAAGAGTAATGGTTTCCATCTTGTCACTCACAGAACCTCCCAATCCCACCTGCGTGTCTCTTGTGCGGCAAAACCAGAAACAGTTGATAAGGTGTGTTCAATTGTGAGGAAACAATTGGCTTTGCCTGAAAGCTCAGAGCTCACCCCTGAATCCAAGTTCTCAGCTCTTGGTGCCGACTCCCTCGACACAGTGGAGATTATTATGACCTTGGAGGAAGAATTTAGCATCAATATCGAAGAGGATAACGCTCAGAACATAACGACAGTACAAGAAGCTGCCGATTTGATTGAGGACCTTGTTGTTAAGCAGCAATCTTAA

Protein sequence

MAMASFSSTCLRFRIPLNQAAKTNQNQCQVLRRSSAGAGGLLKSNGFHLVTHRTSQSHLRVSCAAKPETVDKVCSIVRKQLALPESSELTPESKFSALGADSLDTVEIIMTLEEEFSINIEEDNAQNITTVQEAADLIEDLVVKQQS

Homology

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BLAST of CmaCh10G000250.1 vs. Swiss-Prot
Match: ACP4_ARATH (Acyl carrier protein 4, chloroplastic OS=Arabidopsis thaliana GN=ACP4 PE=2 SV=1)

HSP 1 Score: 127.1 bits (318), Expect = 1.6e-28
Identity = 79/143 (55.24%), Postives = 98/143 (68.53%), Query Frame = 1


Query: 3   MASFSSTCLRFRIPLNQAAKTNQNQCQVLRRSSAGAGGLLKSNGFHLVTHRTSQSHLRVS 62
           MAS S+T L F+ P    +       QVLR++S+      +S  F   T  T    L++S
Sbjct: 1   MASLSTTSLSFKAPSTTIS-------QVLRKASSS-----QSVTFGRFTSSTKSLRLQIS 60

Query: 63  CAAKPETVDKVCSIVRKQLALPESSELTPESKFSALGADSLDTVEIIMTLEEEFSINIEE 122
           CAAK ETV KV  IV++QLAL     LT ESKFSALGADSLDTVEI+M LEE+F+I++EE
Sbjct: 61  CAAKAETVQKVSDIVKEQLALAADVPLTAESKFSALGADSLDTVEIVMALEEKFNISVEE 120

Query: 123 DNAQNITTVQEAADLIEDLVVKQ 146
            +AQNITT+QEAADLIEDLV K+
Sbjct: 121 SDAQNITTIQEAADLIEDLVQKK 131

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BLAST of CmaCh10G000250.1 vs. Swiss-Prot
Match: ACP1_CASGL (Acyl carrier protein 1, chloroplastic OS=Casuarina glauca GN=ACP1 PE=2 SV=1)

HSP 1 Score: 119.8 bits (299), Expect = 2.5e-26
Identity = 62/93 (66.67%), Postives = 77/93 (82.80%), Query Frame = 1


Query: 53  RTSQSHLRVSCAAKPETVDKVCSIVRKQLALPESSELTPESKFSALGADSLDTVEIIMTL 112
           R   +   V CAAKPETV+KVC+IV+KQLALP+ S +T ESKF+ LGADSLDTVEI+M L
Sbjct: 42  RMRSARFVVCCAAKPETVEKVCAIVKKQLALPDDSAVTGESKFATLGADSLDTVEIVMGL 101

Query: 113 EEEFSINIEEDNAQNITTVQEAADLIEDLVVKQ 146
           EEEF IN+EE++AQ+I TVQ+AADLIE L+ K+
Sbjct: 102 EEEFGINVEEESAQSIATVQDAADLIEKLIEKK 134

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BLAST of CmaCh10G000250.1 vs. Swiss-Prot
Match: ACP1_CUPLA (Acyl carrier protein 1, chloroplastic OS=Cuphea lanceolata GN=ACL1.1 PE=2 SV=1)

HSP 1 Score: 117.9 bits (294), Expect = 9.6e-26
Identity = 63/87 (72.41%), Postives = 75/87 (86.21%), Query Frame = 1


Query: 59  LRVSCAAKPETVDKVCSIVRKQLALPESSELTPESKFSALGADSLDTVEIIMTLEEEFSI 118
           LRVSC AKPETV KVC IV+KQLALP+ SE+   SKFSALGADSLDTVEI+M LEEEF I
Sbjct: 52  LRVSCQAKPETVAKVCGIVKKQLALPDDSEVNGLSKFSALGADSLDTVEIVMGLEEEFGI 111

Query: 119 NIEEDNAQNITTVQEAADLIEDLVVKQ 146
           ++EE++AQ+I TVQ+AADLIE L+ K+
Sbjct: 112 SVEEESAQSIQTVQDAADLIEKLMEKK 138

[Close]

BLAST of CmaCh10G000250.1 vs. Swiss-Prot
Match: ACP2_CUPLA (Acyl carrier protein 2, chloroplastic OS=Cuphea lanceolata GN=ACL1.2 PE=2 SV=1)

HSP 1 Score: 117.5 bits (293), Expect = 1.3e-25
Identity = 62/93 (66.67%), Postives = 78/93 (83.87%), Query Frame = 1


Query: 53  RTSQSHLRVSCAAKPETVDKVCSIVRKQLALPESSELTPESKFSALGADSLDTVEIIMTL 112
           R     LRV+C AKPETV KVC+IV+KQLALP+ S+++  SKFSALGADSLDTVEI+M L
Sbjct: 43  RRGSFSLRVNCQAKPETVTKVCNIVKKQLALPDDSDVSGVSKFSALGADSLDTVEIVMGL 102

Query: 113 EEEFSINIEEDNAQNITTVQEAADLIEDLVVKQ 146
           EEEF I++EE++AQ+I TVQ+AADLIE L+ K+
Sbjct: 103 EEEFGISVEEESAQSIQTVQDAADLIEKLMEKK 135

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BLAST of CmaCh10G000250.1 vs. Swiss-Prot
Match: ACP4_CUPLA (Acyl carrier protein 4, chloroplastic OS=Cuphea lanceolata GN=ACL1 PE=3 SV=1)

HSP 1 Score: 116.7 bits (291), Expect = 2.1e-25
Identity = 63/89 (70.79%), Postives = 75/89 (84.27%), Query Frame = 1


Query: 57  SHLRVSCAAKPETVDKVCSIVRKQLALPESSELTPESKFSALGADSLDTVEIIMTLEEEF 116
           S  RVSC AKPETV KVC IV+KQLALP+ SE+   SKFSALGADSLDTVEI+M LEEEF
Sbjct: 49  SFARVSCQAKPETVAKVCRIVKKQLALPDDSEVNGLSKFSALGADSLDTVEIVMGLEEEF 108

Query: 117 SINIEEDNAQNITTVQEAADLIEDLVVKQ 146
            I++EE++AQ+I TVQ+AADLIE L+ K+
Sbjct: 109 GISVEEESAQSIQTVQDAADLIEKLMEKK 137

[Close]

BLAST of CmaCh10G000250.1 vs. TrEMBL
Match: E5GBM2_CUCME (Acyl carrier protein OS=Cucumis melo subsp. melo PE=3 SV=1)

HSP 1 Score: 198.4 bits (503), Expect = 6.2e-48
Identity = 115/145 (79.31%), Postives = 121/145 (83.45%), Query Frame = 1


Query: 3   MASFSSTCLRFRIPLNQAAKTNQNQCQVLRRSSAGAGGLLKSNGFHLVTHRTSQSHLRVS 62
           MASFS+T LRF IP+NQA K N NQ  +LRRS  G G L  +N F          HLRVS
Sbjct: 1   MASFSATSLRFCIPINQANKMNHNQ--LLRRSFPGQGLLSNNNAF----------HLRVS 60

Query: 63  CAAKPETVDKVCSIVRKQLALPESSELTPESKFSALGADSLDTVEIIMTLEEEFSINIEE 122
           CAAKPETVDKVCSIVRKQLALPE+SELTPESKF+ALGADSLDTVEIIMTLEEEFSINIEE
Sbjct: 61  CAAKPETVDKVCSIVRKQLALPETSELTPESKFAALGADSLDTVEIIMTLEEEFSINIEE 120

Query: 123 DNAQNITTVQEAADLIEDLVVKQQS 148
           DNAQNITTVQEAADLIEDLVVKQQS
Sbjct: 121 DNAQNITTVQEAADLIEDLVVKQQS 133

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BLAST of CmaCh10G000250.1 vs. TrEMBL
Match: A0A0A0LNR6_CUCSA (Acyl carrier protein OS=Cucumis sativus GN=Csa_1G000670 PE=3 SV=1)

HSP 1 Score: 192.6 bits (488), Expect = 3.4e-46
Identity = 111/145 (76.55%), Postives = 120/145 (82.76%), Query Frame = 1


Query: 3   MASFSSTCLRFRIPLNQAAKTNQNQCQVLRRSSAGAGGLLKSNGFHLVTHRTSQSHLRVS 62
           MASFS+T LRF +P+NQA K N NQ  +LRRS  G G L  +N FH           RVS
Sbjct: 1   MASFSATSLRFCMPINQANKMNHNQ--LLRRSLLGRGFLNNNNAFHF----------RVS 60

Query: 63  CAAKPETVDKVCSIVRKQLALPESSELTPESKFSALGADSLDTVEIIMTLEEEFSINIEE 122
           CAAKPET+DKVCSIVRKQLALPE+SELTPESKF+ALGADSLDTVEIIMTLEEEFSINIEE
Sbjct: 61  CAAKPETLDKVCSIVRKQLALPETSELTPESKFAALGADSLDTVEIIMTLEEEFSINIEE 120

Query: 123 DNAQNITTVQEAADLIEDLVVKQQS 148
           DNAQNITTVQEAADLIE+LVVKQQS
Sbjct: 121 DNAQNITTVQEAADLIENLVVKQQS 133

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BLAST of CmaCh10G000250.1 vs. TrEMBL
Match: A0A059BF77_EUCGR (Acyl carrier protein OS=Eucalyptus grandis GN=EUGRSUZ_G01960 PE=3 SV=1)

HSP 1 Score: 140.2 bits (352), Expect = 2.0e-30
Identity = 85/143 (59.44%), Postives = 102/143 (71.33%), Query Frame = 1


Query: 3   MASFSSTCLRFRIPLNQAAKTNQNQCQVLRRSSAGAGGLLKSNGFHLVTHRTSQSHLRVS 62
           MAS S+  + FR     + K+N+     L+  S G     + NGF  +      S  RVS
Sbjct: 1   MASVSAASVTFRALSKPSLKSNETSS--LKVVSLG----WRKNGFPSLR----SSRFRVS 60

Query: 63  CAAKPETVDKVCSIVRKQLALPESSELTPESKFSALGADSLDTVEIIMTLEEEFSINIEE 122
           CAAKPETVDKVC IVRKQLALP  +ELTPESKFSA+GADSLDTVEI+M LEEEF I++EE
Sbjct: 61  CAAKPETVDKVCEIVRKQLALPAEAELTPESKFSAIGADSLDTVEIVMALEEEFDISVEE 120

Query: 123 DNAQNITTVQEAADLIEDLVVKQ 146
           +++QNITTVQEAADLIE LV K+
Sbjct: 121 ESSQNITTVQEAADLIEKLVQKK 133

[Close]

BLAST of CmaCh10G000250.1 vs. TrEMBL
Match: B9I3Y4_POPTR (Acyl carrier protein OS=Populus trichocarpa GN=POPTR_0012s10710g PE=3 SV=2)

HSP 1 Score: 137.5 bits (345), Expect = 1.3e-29
Identity = 82/140 (58.57%), Postives = 102/140 (72.86%), Query Frame = 1


Query: 3   MASFSSTCLRFRIPLNQAAKTNQNQCQVLRRSSAGAGGLLKSNGFHLVTHRTSQSHLRVS 62
           MA+ S+TCLRF+   +Q+ K++Q    +   S     G  K+NGF  +      S  RVS
Sbjct: 47  MATVSATCLRFQPLFSQSNKSSQAAASLKPVSV----GWAKNNGFPSL----KASRFRVS 106

Query: 63  CAAKPETVDKVCSIVRKQLALPESSELTPESKFSALGADSLDTVEIIMTLEEEFSINIEE 122
           CAAKPETV+KV  IVRKQLAL   +ELT ESKF+ALGADSLDTVEI+M LEEEF IN+EE
Sbjct: 107 CAAKPETVEKVIEIVRKQLALTPETELTNESKFAALGADSLDTVEIVMALEEEFDINVEE 166

Query: 123 DNAQNITTVQEAADLIEDLV 143
           +N+QNITTV+EAAD+I+ LV
Sbjct: 167 ENSQNITTVREAADMIDKLV 178

[Close]

BLAST of CmaCh10G000250.1 vs. TrEMBL
Match: A0A059BDY2_EUCGR (Acyl carrier protein OS=Eucalyptus grandis GN=EUGRSUZ_G01960 PE=3 SV=1)

HSP 1 Score: 135.6 bits (340), Expect = 5.0e-29
Identity = 85/144 (59.03%), Postives = 102/144 (70.83%), Query Frame = 1


Query: 3   MASFSSTCLRFRIPLNQAAKTNQNQCQVLRRSSAGAGGLLKSNGFHLVTHRTSQSHLRVS 62
           MAS S+  + FR     + K+N+     L+  S G     + NGF  +      S  RVS
Sbjct: 1   MASVSAASVTFRALSKPSLKSNETSS--LKVVSLG----WRKNGFPSLR----SSRFRVS 60

Query: 63  CA-AKPETVDKVCSIVRKQLALPESSELTPESKFSALGADSLDTVEIIMTLEEEFSINIE 122
           CA AKPETVDKVC IVRKQLALP  +ELTPESKFSA+GADSLDTVEI+M LEEEF I++E
Sbjct: 61  CAQAKPETVDKVCEIVRKQLALPAEAELTPESKFSAIGADSLDTVEIVMALEEEFDISVE 120

Query: 123 EDNAQNITTVQEAADLIEDLVVKQ 146
           E+++QNITTVQEAADLIE LV K+
Sbjct: 121 EESSQNITTVQEAADLIEKLVQKK 134

[Close]

BLAST of CmaCh10G000250.1 vs. TAIR10
Match: AT4G25050.2 (AT4G25050.2 acyl carrier protein 4)

HSP 1 Score: 118.2 bits (295), Expect = 4.2e-27
Identity = 79/155 (50.97%), Postives = 98/155 (63.23%), Query Frame = 1


Query: 3   MASFSSTCLRFRIPLNQAAKTNQNQCQVLRRSSAGAGGLLKSNGFHLVTHRTSQSHLRVS 62
           MAS S+T L F+ P    +       QVLR++S+      +S  F   T  T    L++S
Sbjct: 1   MASLSTTSLSFKAPSTTIS-------QVLRKASSS-----QSVTFGRFTSSTKSLRLQIS 60

Query: 63  CAAKPETVDKVCSIVRKQLALPESSELTPESKFSALGADSLDT------------VEIIM 122
           CAAK ETV KV  IV++QLAL     LT ESKFSALGADSLDT            VEI+M
Sbjct: 61  CAAKAETVQKVSDIVKEQLALAADVPLTAESKFSALGADSLDTVCYTLSVSYHCHVEIVM 120

Query: 123 TLEEEFSINIEEDNAQNITTVQEAADLIEDLVVKQ 146
            LEE+F+I++EE +AQNITT+QEAADLIEDLV K+
Sbjct: 121 ALEEKFNISVEESDAQNITTIQEAADLIEDLVQKK 143

[Close]

BLAST of CmaCh10G000250.1 vs. TAIR10
Match: AT1G54580.1 (AT1G54580.1 acyl carrier protein 2)

HSP 1 Score: 111.7 bits (278), Expect = 3.9e-25
Identity = 62/108 (57.41%), Postives = 82/108 (75.93%), Query Frame = 1


Query: 38  AGGLLKSNGFHLVTHRTSQSHLRVSCAAKPETVDKVCSIVRKQLALPESSELTPESKFSA 97
           + G   S  F+L   R   + L VSCAAKPETVDKVC++VRKQL+L E+ E+T  +KF+A
Sbjct: 30  SNGRRSSLSFNL---RQLPTRLTVSCAAKPETVDKVCAVVRKQLSLKEADEITAATKFAA 89

Query: 98  LGADSLDTVEIIMTLEEEFSINIEEDNAQNITTVQEAADLIEDLVVKQ 146
           LGADSLDTVEI+M LEEEF I + E+ AQ+I TV++AA LIE+L+ ++
Sbjct: 90  LGADSLDTVEIVMGLEEEFGIEMAEEKAQSIATVEQAAALIEELLFEK 134

[Close]

BLAST of CmaCh10G000250.1 vs. TAIR10
Match: AT1G54630.1 (AT1G54630.1 acyl carrier protein 3)

HSP 1 Score: 110.2 bits (274), Expect = 1.1e-24
Identity = 57/93 (61.29%), Postives = 76/93 (81.72%), Query Frame = 1


Query: 53  RTSQSHLRVSCAAKPETVDKVCSIVRKQLALPESSELTPESKFSALGADSLDTVEIIMTL 112
           R   + L V CAAKPETVDKVC++VRKQL+L E+ E+T  +KF+ALGADSLDTVEI+M L
Sbjct: 42  RQLPTRLTVYCAAKPETVDKVCAVVRKQLSLKEADEITAATKFAALGADSLDTVEIVMGL 101

Query: 113 EEEFSINIEEDNAQNITTVQEAADLIEDLVVKQ 146
           EEEF I + E+ AQ+I TV++AA LIE+L++++
Sbjct: 102 EEEFGIEMAEEKAQSIATVEQAAALIEELLLEK 134

[Close]

BLAST of CmaCh10G000250.1 vs. TAIR10
Match: AT5G27200.1 (AT5G27200.1 acyl carrier protein 5)

HSP 1 Score: 99.4 bits (246), Expect = 2.0e-21
Identity = 64/139 (46.04%), Postives = 84/139 (60.43%), Query Frame = 1


Query: 4   ASFSSTCLRFRIPLNQAAKTNQNQCQVLRRSSAGAGGLLKSNGFHLVTHRTSQSHLRVSC 63
           A FS+T  RF   LN+ A    N+               K+N       R   + L VSC
Sbjct: 13  APFSATTTRFC--LNKQATIFNNE---------------KTNNLSFSLRRLMPARLAVSC 72

Query: 64  AAKPETVDKVCSIVRKQLALPESSELTPESKFSALGADSLDTVEIIMTLEEEFSINIEED 123
           A K ETV+KV  IV+KQL+L +  ++T  +KF+ LGADSLDTVEI+M LEEEF I + E+
Sbjct: 73  AVKQETVEKVSEIVKKQLSLTDDQKVTAGTKFTELGADSLDTVEIVMGLEEEFGITMAEE 132

Query: 124 NAQNITTVQEAADLIEDLV 143
            A+ I TVQ+AA+LIE+LV
Sbjct: 133 RAKEIATVQQAAELIEELV 134

[Close]

BLAST of CmaCh10G000250.1 vs. TAIR10
Match: AT3G05020.1 (AT3G05020.1 acyl carrier protein 1)

HSP 1 Score: 97.8 bits (242), Expect = 5.8e-21
Identity = 58/127 (45.67%), Postives = 84/127 (66.14%), Query Frame = 1


Query: 20  AAKTNQNQCQVLRRSSAGAGGLLKSNGFHLVTHRTSQS----HLRVSCAAKPETVDKVCS 79
           A+ + Q  C    R S     L+ ++G   ++    +S     L VSCAAK ET++KV +
Sbjct: 7   ASVSLQTSCLATTRISFQKPALISNHGKTNLSFNLRRSIPSRRLSVSCAAKQETIEKVSA 66

Query: 80  IVRKQLALPESSELTPESKFSALGADSLDTVEIIMTLEEEFSINIEEDNAQNITTVQEAA 139
           IV+KQL+L    ++  E+KF+ LGADSLDTVEI+M LEEEF+I + E+ AQ I TV++AA
Sbjct: 67  IVKKQLSLTPDKKVVAETKFADLGADSLDTVEIVMGLEEEFNIQMAEEKAQKIATVEQAA 126

Query: 140 DLIEDLV 143
           +LIE+L+
Sbjct: 127 ELIEELI 133

[Close]

BLAST of CmaCh10G000250.1 vs. NCBI nr
Match: gi|659128820|ref|XP_008464386.1| (PREDICTED: acyl carrier protein 4, chloroplastic [Cucumis melo])

HSP 1 Score: 198.4 bits (503), Expect = 9.0e-48
Identity = 115/145 (79.31%), Postives = 121/145 (83.45%), Query Frame = 1


Query: 3   MASFSSTCLRFRIPLNQAAKTNQNQCQVLRRSSAGAGGLLKSNGFHLVTHRTSQSHLRVS 62
           MASFS+T LRF IP+NQA K N NQ  +LRRS  G G L  +N F          HLRVS
Sbjct: 1   MASFSATSLRFCIPINQANKMNHNQ--LLRRSFPGQGLLSNNNAF----------HLRVS 60

Query: 63  CAAKPETVDKVCSIVRKQLALPESSELTPESKFSALGADSLDTVEIIMTLEEEFSINIEE 122
           CAAKPETVDKVCSIVRKQLALPE+SELTPESKF+ALGADSLDTVEIIMTLEEEFSINIEE
Sbjct: 61  CAAKPETVDKVCSIVRKQLALPETSELTPESKFAALGADSLDTVEIIMTLEEEFSINIEE 120

Query: 123 DNAQNITTVQEAADLIEDLVVKQQS 148
           DNAQNITTVQEAADLIEDLVVKQQS
Sbjct: 121 DNAQNITTVQEAADLIEDLVVKQQS 133

[Close]

BLAST of CmaCh10G000250.1 vs. NCBI nr
Match: gi|449440504|ref|XP_004138024.1| (PREDICTED: acyl carrier protein 4, chloroplastic [Cucumis sativus])

HSP 1 Score: 192.6 bits (488), Expect = 4.9e-46
Identity = 111/145 (76.55%), Postives = 120/145 (82.76%), Query Frame = 1


Query: 3   MASFSSTCLRFRIPLNQAAKTNQNQCQVLRRSSAGAGGLLKSNGFHLVTHRTSQSHLRVS 62
           MASFS+T LRF +P+NQA K N NQ  +LRRS  G G L  +N FH           RVS
Sbjct: 1   MASFSATSLRFCMPINQANKMNHNQ--LLRRSLLGRGFLNNNNAFHF----------RVS 60

Query: 63  CAAKPETVDKVCSIVRKQLALPESSELTPESKFSALGADSLDTVEIIMTLEEEFSINIEE 122
           CAAKPET+DKVCSIVRKQLALPE+SELTPESKF+ALGADSLDTVEIIMTLEEEFSINIEE
Sbjct: 61  CAAKPETLDKVCSIVRKQLALPETSELTPESKFAALGADSLDTVEIIMTLEEEFSINIEE 120

Query: 123 DNAQNITTVQEAADLIEDLVVKQQS 148
           DNAQNITTVQEAADLIE+LVVKQQS
Sbjct: 121 DNAQNITTVQEAADLIENLVVKQQS 133

[Close]

BLAST of CmaCh10G000250.1 vs. NCBI nr
Match: gi|702418586|ref|XP_010066441.1| (PREDICTED: acyl carrier protein 4, chloroplastic isoform X2 [Eucalyptus grandis])

HSP 1 Score: 140.2 bits (352), Expect = 2.9e-30
Identity = 85/143 (59.44%), Postives = 102/143 (71.33%), Query Frame = 1


Query: 3   MASFSSTCLRFRIPLNQAAKTNQNQCQVLRRSSAGAGGLLKSNGFHLVTHRTSQSHLRVS 62
           MAS S+  + FR     + K+N+     L+  S G     + NGF  +      S  RVS
Sbjct: 1   MASVSAASVTFRALSKPSLKSNETSS--LKVVSLG----WRKNGFPSLR----SSRFRVS 60

Query: 63  CAAKPETVDKVCSIVRKQLALPESSELTPESKFSALGADSLDTVEIIMTLEEEFSINIEE 122
           CAAKPETVDKVC IVRKQLALP  +ELTPESKFSA+GADSLDTVEI+M LEEEF I++EE
Sbjct: 61  CAAKPETVDKVCEIVRKQLALPAEAELTPESKFSAIGADSLDTVEIVMALEEEFDISVEE 120

Query: 123 DNAQNITTVQEAADLIEDLVVKQ 146
           +++QNITTVQEAADLIE LV K+
Sbjct: 121 ESSQNITTVQEAADLIEKLVQKK 133

[Close]

BLAST of CmaCh10G000250.1 vs. NCBI nr
Match: gi|566197824|ref|XP_002318163.2| (hypothetical protein POPTR_0012s10710g [Populus trichocarpa])

HSP 1 Score: 137.5 bits (345), Expect = 1.9e-29
Identity = 82/140 (58.57%), Postives = 102/140 (72.86%), Query Frame = 1


Query: 3   MASFSSTCLRFRIPLNQAAKTNQNQCQVLRRSSAGAGGLLKSNGFHLVTHRTSQSHLRVS 62
           MA+ S+TCLRF+   +Q+ K++Q    +   S     G  K+NGF  +      S  RVS
Sbjct: 47  MATVSATCLRFQPLFSQSNKSSQAAASLKPVSV----GWAKNNGFPSL----KASRFRVS 106

Query: 63  CAAKPETVDKVCSIVRKQLALPESSELTPESKFSALGADSLDTVEIIMTLEEEFSINIEE 122
           CAAKPETV+KV  IVRKQLAL   +ELT ESKF+ALGADSLDTVEI+M LEEEF IN+EE
Sbjct: 107 CAAKPETVEKVIEIVRKQLALTPETELTNESKFAALGADSLDTVEIVMALEEEFDINVEE 166

Query: 123 DNAQNITTVQEAADLIEDLV 143
           +N+QNITTV+EAAD+I+ LV
Sbjct: 167 ENSQNITTVREAADMIDKLV 178

[Close]

BLAST of CmaCh10G000250.1 vs. NCBI nr
Match: gi|702418546|ref|XP_010066440.1| (PREDICTED: acyl carrier protein 4, chloroplastic isoform X1 [Eucalyptus grandis])

HSP 1 Score: 135.6 bits (340), Expect = 7.1e-29
Identity = 85/144 (59.03%), Postives = 102/144 (70.83%), Query Frame = 1


Query: 3   MASFSSTCLRFRIPLNQAAKTNQNQCQVLRRSSAGAGGLLKSNGFHLVTHRTSQSHLRVS 62
           MAS S+  + FR     + K+N+     L+  S G     + NGF  +      S  RVS
Sbjct: 1   MASVSAASVTFRALSKPSLKSNETSS--LKVVSLG----WRKNGFPSLR----SSRFRVS 60

Query: 63  CA-AKPETVDKVCSIVRKQLALPESSELTPESKFSALGADSLDTVEIIMTLEEEFSINIE 122
           CA AKPETVDKVC IVRKQLALP  +ELTPESKFSA+GADSLDTVEI+M LEEEF I++E
Sbjct: 61  CAQAKPETVDKVCEIVRKQLALPAEAELTPESKFSAIGADSLDTVEIVMALEEEFDISVE 120

Query: 123 EDNAQNITTVQEAADLIEDLVVKQ 146
           E+++QNITTVQEAADLIE LV K+
Sbjct: 121 EESSQNITTVQEAADLIEKLVQKK 134

The following BLAST results are available for this feature:

BLAST of CmaCh10G000250.1 vs. Swiss-Prot


Match Name	E-value	Identity	Description
ACP4_ARATH	1.6e-28	55.24	Acyl carrier protein 4, chloroplastic OS=Arabidopsis thaliana GN=ACP4 PE=2 SV=1	[more]
ACP1_CASGL	2.5e-26	66.67	Acyl carrier protein 1, chloroplastic OS=Casuarina glauca GN=ACP1 PE=2 SV=1	[more]
ACP1_CUPLA	9.6e-26	72.41	Acyl carrier protein 1, chloroplastic OS=Cuphea lanceolata GN=ACL1.1 PE=2 SV=1	[more]
ACP2_CUPLA	1.3e-25	66.67	Acyl carrier protein 2, chloroplastic OS=Cuphea lanceolata GN=ACL1.2 PE=2 SV=1	[more]
ACP4_CUPLA	2.1e-25	70.79	Acyl carrier protein 4, chloroplastic OS=Cuphea lanceolata GN=ACL1 PE=3 SV=1	[more]

BLAST of CmaCh10G000250.1 vs. TrEMBL


Match Name	E-value	Identity	Description
E5GBM2_CUCME	6.2e-48	79.31	Acyl carrier protein OS=Cucumis melo subsp. melo PE=3 SV=1	[more]
A0A0A0LNR6_CUCSA	3.4e-46	76.55	Acyl carrier protein OS=Cucumis sativus GN=Csa_1G000670 PE=3 SV=1	[more]
A0A059BF77_EUCGR	2.0e-30	59.44	Acyl carrier protein OS=Eucalyptus grandis GN=EUGRSUZ_G01960 PE=3 SV=1	[more]
B9I3Y4_POPTR	1.3e-29	58.57	Acyl carrier protein OS=Populus trichocarpa GN=POPTR_0012s10710g PE=3 SV=2	[more]
A0A059BDY2_EUCGR	5.0e-29	59.03	Acyl carrier protein OS=Eucalyptus grandis GN=EUGRSUZ_G01960 PE=3 SV=1	[more]

BLAST of CmaCh10G000250.1 vs. TAIR10


Match Name	E-value	Identity	Description
AT4G25050.2	4.2e-27	50.97	acyl carrier protein 4	[more]
AT1G54580.1	3.9e-25	57.41	acyl carrier protein 2	[more]
AT1G54630.1	1.1e-24	61.29	acyl carrier protein 3	[more]
AT5G27200.1	2.0e-21	46.04	acyl carrier protein 5	[more]
AT3G05020.1	5.8e-21	45.67	acyl carrier protein 1	[more]

BLAST of CmaCh10G000250.1 vs. NCBI nr


Match Name	E-value	Identity	Description
gi\|659128820\|ref\|XP_008464386.1\|	9.0e-48	79.31	PREDICTED: acyl carrier protein 4, chloroplastic [Cucumis melo]	[more]
gi\|449440504\|ref\|XP_004138024.1\|	4.9e-46	76.55	PREDICTED: acyl carrier protein 4, chloroplastic [Cucumis sativus]	[more]
gi\|702418586\|ref\|XP_010066441.1\|	2.9e-30	59.44	PREDICTED: acyl carrier protein 4, chloroplastic isoform X2 [Eucalyptus grandis]	[more]
gi\|566197824\|ref\|XP_002318163.2\|	1.9e-29	58.57	hypothetical protein POPTR_0012s10710g [Populus trichocarpa]	[more]
gi\|702418546\|ref\|XP_010066440.1\|	7.1e-29	59.03	PREDICTED: acyl carrier protein 4, chloroplastic isoform X1 [Eucalyptus grandis]	[more]

Annotated Terms

The following terms have been associated with this mRNA:

Vocabulary: **INTERPRO**
Term	Definition
IPR003231	Acyl_carrier
IPR006162	Ppantetheine_attach_site
IPR009081	PP-bd_ACP
IPR020806	PKS_PP-bd

Vocabulary: **Biological Process**
Term	Definition
GO:0006633	fatty acid biosynthetic process

Vocabulary: **Molecular Function**
Term	Definition
GO:0031177	phosphopantetheine binding

GO Annotation

GO Assignments

This mRNA is annotated with the following GO terms.

Category	Term Accession	Term Name
biological_process	GO:0006633	fatty acid biosynthetic process
cellular_component	GO:0005575	cellular_component
molecular_function	GO:0031177	phosphopantetheine binding

Relationships

This mRNA is a part of the following gene feature(s):


Feature Name	Unique Name	Type
CmaCh10G000250	CmaCh10G000250	gene

The following polypeptide feature(s) derives from this mRNA:


Feature Name	Unique Name	Type
CmaCh10G000250.1	CmaCh10G000250.1-protein	polypeptide

The following three_prime_UTR feature(s) are a part of this mRNA:


Feature Name	Unique Name	Type
CmaCh10G000250.1.three_prime_UTR.1	CmaCh10G000250.1.three_prime_UTR.1	three_prime_UTR

The following CDS feature(s) are a part of this mRNA:


Feature Name	Unique Name	Type
CmaCh10G000250.1.CDS.4	CmaCh10G000250.1.CDS.4	CDS
CmaCh10G000250.1.CDS.3	CmaCh10G000250.1.CDS.3	CDS
CmaCh10G000250.1.CDS.2	CmaCh10G000250.1.CDS.2	CDS
CmaCh10G000250.1.CDS.1	CmaCh10G000250.1.CDS.1	CDS

The following five_prime_UTR feature(s) are a part of this mRNA:


Feature Name	Unique Name	Type
CmaCh10G000250.1.five_prime_UTR.1	CmaCh10G000250.1.five_prime_UTR.1	five_prime_UTR

The following exon feature(s) are a part of this mRNA:


Feature Name	Unique Name	Type
CmaCh10G000250.1.exon.4	CmaCh10G000250.1.exon.4	exon
CmaCh10G000250.1.exon.3	CmaCh10G000250.1.exon.3	exon
CmaCh10G000250.1.exon.2	CmaCh10G000250.1.exon.2	exon
CmaCh10G000250.1.exon.1	CmaCh10G000250.1.exon.1	exon

InterPro

Analysis Name: InterPro Annotations of Cucurbita maxima
Date Performed: 2017-05-20


IPR Term	IPR Description	Source	Source Term	Source Description	Alignment
IPR003231	Acyl carrier protein (ACP)	PRODOM	PD000887		coord: 99..139 score: 1.0
IPR003231	Acyl carrier protein (ACP)	HAMAP	MF_01217	Acyl_carrier	coord: 68..142 score: 17
IPR003231	Acyl carrier protein (ACP)	TIGRFAMs	TIGR00517	TIGR00517	coord: 68..140 score: 2.6
IPR006162	Phosphopantetheine attachment site	PROSITE	PS00012	PHOSPHOPANTETHEINE	coord: 97..112 scor
IPR009081	Phosphopantetheine binding ACP domain	GENE3D	G3DSA:1.10.1200.10		coord: 58..144 score: 9.5
IPR009081	Phosphopantetheine binding ACP domain	PFAM	PF00550	PP-binding	coord: 71..138 score: 2.8
IPR009081	Phosphopantetheine binding ACP domain	PROFILE	PS50075	ACP_DOMAIN	coord: 69..139 score: 19
IPR009081	Phosphopantetheine binding ACP domain	unknown	SSF47336	ACP-like	coord: 67..142 score: 5.1
IPR020806	Polyketide synthase, phosphopantetheine-binding domain	SMART	SM00823	PKS_PP	coord: 70..142 score: 0.
None	No IPR available	PANTHER	PTHR20863	ACYL CARRIER PROTEIN/ZINC FINGER PROTEIN 593-RELATED	coord: 2..147 score: 3.3
None	No IPR available	PANTHER	PTHR20863:SF28	ACYL CARRIER PROTEIN 4, CHLOROPLASTIC	coord: 2..147 score: 3.3