CmaCh08G005590 (gene) Cucurbita maxima (Rimu) | Cucurbit Genomics Database (CuGenDB)

Overview


Name	CmaCh08G005590
Type	gene
Organism	Cucurbita maxima (Cucurbita maxima (Rimu))
Description	Coffea canephora DH200=94 genomic scaffold, scaffold_27
Location	Cma_Chr08 : 3190678 .. 3193819 (-)

Genome Viewer

Gene Expression

Sequences

The following sequences are available for this feature:

Gene sequence (with intron)

Legend: exonfive_prime_UTRCDSthree_prime_UTR

Hold the cursor over a type above to highlight its positions in the sequence below.

TCCACACCCTCCGTGCAGCATCTCGTGCGAACTTTCCTCGTCCGAAGTTGACGAAGTCATTGTAACAAGACTGAAGGTGAATGGCTTCCGTCTTCGCCGCGCCGCCGTCTCAACTGGTCCTCTCTTCTCACCGCCCAAGTTTGGATCACAAAGCCTTTCTTCCTTCCATCGTCGGCGTTAAATTTCATCGGAATGGCTTTCCAATTCCTTCTTTCAGGTATCCTTAGTTTAATCACTCCTCTTCGATCCCTCGCATTCGACTTATTTAATCTCAGTAGATATCAGGTCTGTTGTATATTGTTAATGAGACTAGTGATCAATTTAGTAATGAAGTTCATCTGTTAGTTCTGTGAAGTAGTTCGACTTTGATTCTTTTGTTGATATTTGATAATGGAATCCGGCAGGTTGTTGCTAATTCCTAATTCTTTTTTGCTACTAACGCCAGGTGCTTATAAACTAGTATTATGTTTTGTTTTGTTTTTCTGAATTTTTATTAGTTTGCGTGTAATGTAATGCACCTTTGGGTTGATACCTACTTCAGCAGTCCTCTACGATCCCTCGCATTAGGCACAATTATTTCAGAAGATATCTGGACTGTTACCCTTGCAATGAGCATGTTAACATGGAAGTTCATCTGTTGCTTAGTTCTGTAAAGTGAATCCACCTTGATTCTTGTGATGGAAATGGAATTTGGCAGGTAGTAAAACACTGAATCTTAATTGGTTTTCGCTATGCTACTCCGGCAAGGAACTCATACTAGCATTAGGATTTTGGCTTTATTTTTCTGGTTTTCTTCCAATTCCAAGTTGAAATAGGATGAATCTTTGATTTGATACTTTCTGGCTTCCGGATGCGACTGGGGAAAGTTTATTAGTTCTTTCTGAAAGCTCTTCTCTGATTGTGAAGTAGTTACATTTAAGATTGCCAGAAAATGATAATTCTGGAATGGCCTCTATAATTTCTTCGAAAAAAAATTTAGACTTTTTAGATGAATAACAGCTGTTGGAAGAACCACAGTAATAATAAATGGTTTAAATCTTACAACAATTAATTTGAATTCTATCGTCTTCTCAAGTTGTCAGTTGACTCAACAATTAATTTGGAGTTTCCTCTTTCAAACTTTCTGGAAGTATTGGTGCATACTGTTTCCTATCATTCATGGTTCGATCTTTATGGTATTTTGTCGGTTTAGACTTTCATTTACTTCAACTCTTTCCTCACAAAGACATCATATACTTATATAAAACTAAATCAGTAGCTGAGATCCTCCTTGCATCTGCCAGAAATTAGAACACAACTAGTCTGAGATGACTGATACTTGTAATCACAATATTGCTACTCAGCTGAGTGGTTGTGTGCTTTCTTTTATGCAGGTACAAGAACACCAAAGGATTGAAATTGAGGCAAAGATCTTTTTCTATAACAGCATCAAATTCCTCAGATGGGAATTCCACCAAGGAGGAAAATGATGGAAGTAAAGTAACTGGTGATGCCCAAGGTCCTCCATTTCTTACCATTTTGGCTGGATTTTTTGTCTTTTCCCTCGTCCTTTGGATAGTCAGTTCCTCTGTCACAACCCTTATAGCTCTAGTCGTCAAGTTGATCTCAACAAAGTAGTGTTGCATTATTGGCAAAATTTCATGTTTAGTTTCCTCTCAATTATGTTTAGTTTTGGGGGAAGGACCTGAATATAGGCAGTTGATTTGGTAAGACTTAAGTACTAAATGTACATTGACTCATTTTGTAGTAATCTAGTTGAATCTTCTTTCTTTATATGTCATTTTCTAGAGTCGTTACCATCATTCTTATTCCCATCCAGATTAAAATCTAATGGCAAAGGGAACAAGAACTAAATGGTACTATACTTGGACAATGATGAAGGATTTCTACAGAACAAGGTGGCAAAATATATTATCCGTTGGAGAAATTACATTCCAAACAGTGGTAGAACACATTCCTTTATGGAATATAACAAAATTGTGATAGAGAATTTAAATTACTTTACTTGGCCCTTAAATAAACCAAAAGAAAAAGTGTATATATATTATATATGTCTAACTAGCACAATTCTTTTCTGTTTCTGAATTTTCTCCAGCTGAAGCTGTAAACTTCCGCCGGTCATCAGTGGAAGCAGTTATCACCGGCATCCAAATATCAGCAGTATGACTCAAAAGAGACTGCACCTGTGGGTCAGCAGCCATTGCTGAAGAAATCATTTCATCCACATCGTCTAGCTTTTCAGATAACTTATCCAACTCCTTCGCAAGTTCCATCTGAATAAATAGGAAATTGACTTTTTAGACATTAGATTCAATCTCTTCAAGAAAATGTTGATAAATGCAATGAGTGTATGAAGGAAACCAGACGGACTTCATCGAGCTGCTTTAAGGACTTTGAGGGTACTTTTGTTACTTCAAGTCCAAGGGCTTCGATCTTCATACGAAGCTCAACTTCCTCCTGGTTGGTCAGTGATTCCACCTGCAAGATAATTGCATCTTAGGAAAGAAAAGAGCAGAGAAGTTCACAAAATTTCCTGGCATGGATGGATATGTCCGAGCAGGTATTTCTGACGAGGATTATTGAAAGAATTAGTCCTACATTGACTAATTAAGAAGAAGAGCATGAGTTTATAAATAAGGAACACTATTTTTATGAGAGCTTAGACTAAAAGGTGGACAATATCTGTGGAGGGTCGTGGCTTCTTCATCAGATATTATGTTCATCTCCCTAAGTTACCTATTCCCAGCCTTTCCCAACCCAACTCTAGTGTAAATCTACAATGTAACGGTTCAAGCCCACTGTTAACAATATTGCCCGCCTTTGAAATTTTTCCTCAACATTTTTAAAATGCATCTATTAGGGAGAGGTTTCCACACCCTTGTAAATAATGTTTCGTTCTCCTCCTCGTGAATGAGGTTAGATCCATCGTCCGGACTGAAGAATTCCAATTCATAGACAACCAATCCAATCAGGAAAAGAATCAGAAACAAGAAGAAGGTAAATGGCAGCAAATGAAATGAACATAGGGAAATAAAAGCGAAAGTGGATGAATGAATGAGGAGGAAAATGGAGGGAAATTATGACCTGGTGAAGAAGACTGGCAAGAAGCTGGAATAGTTGCTCGTCCGCCTTCCATTTCTCG

mRNA sequence

TCCACACCCTCCGTGCAGCATCTCGTGCGAACTTTCCTCGTCCGAAGTTGACGAAGTCATTGTAACAAGACTGAAGGTGAATGGCTTCCGTCTTCGCCGCGCCGCCGTCTCAACTGGTCCTCTCTTCTCACCGCCCAAGTTTGGATCACAAAGCCTTTCTTCCTTCCATCGTCGGCGTTAAATTTCATCGGAATGGCTTTCCAATTCCTTCTTTCAGATATCAGTTTGCGTGTAATGTAATGCACCTTTGGGTTGATACCTACTTCAGCAGTCCTCTACGATCCCTCGCATTAGGCACAATTATTTCAGAAGATATCTGGACTGTTACCCTTGCAATGAGCATGTTAACATGGAAGTTCATCTGTTGCTTAGTTCTGTACAAGAACACCAAAGGATTGAAATTGAGGCAAAGATCTTTTTCTATAACAGCATCAAATTCCTCAGATGGGAATTCCACCAAGGAGGAAAATGATGGAAGTAAAGTAACTGGTGATGCCCAAGGTCCTCCATTTCTTACCATTTTGGCTGGATTTTTTGTCTTTTCCCTCGTCCTTTGGATAGTCAGTTCCTCTGTCACAACCCTTATAGCTCTAGTCGTCAAGTTGATCTCAACAAAGTAGTGTTGCATTATTGGCAAAATTTCATGTTTAGTTTCCTCTCAATTATGTTTAGTTTTGGGGGAAGGACCTGAATATAGGCAGTTGATTTGGTAAGACTTAAGTACTAAATGTACATTGACTCATTTTGTAGTAATCTAGTTGAATCTTCTTTCTTTATATGTCATTTTCTAGAGTCGTTACCATCATTCTTATTCCCATCCAGATTAAAATCTAATGGCAAAGGGAACAAGAACTAAATGGTACTATACTTGGACAATGATGAAGGATTTCTACAGAACAAGGTGGCAAAATATATTATCCGTTGGAGAAATTACATTCCAAACAGTGCTGAAGCTGTAAACTTCCGCCGGTCATCAGTGGAAGCAGTTATCACCGGCATCCAAATATCAGCAGTATGACTCAAAAGAGACTGCACCTGTGGGTCAGCAGCCATTGCTGAAGAAATCATTTCATCCACATCGTCTAGCTTTTCAGATAACTTATCCAACTCCTTCGCAAGTTCCATCTGAATAAATAGGAAATTGACTTTTTAGACATTAGATTCAATCTCTTCAAGAAAATGTTGATAAATGCAATGAGTGTATGAAGGAAACCAGACGGACTTCATCGAGCTGCTTTAAGGACTTTGAGGGTACTTTTGTTACTTCAAGTCCAAGGGCTTCGATCTTCATACGAAGCTCAACTTCCTCCTGGTTGGTCAGTGATTCCACCTGCAAGATAATTGCATCTTAGGAAAGAAAAGAGCAGAGAAGTTCACAAAATTTCCTGGCATGGATGGATATGTCCGAGCAGGTATTTCTGACGAGGATTATTGAAAGAATTAGTCCTACATTGACTAATTAAGAAGAAGAGCATGAGTTTATAAATAAGGAACACTATTTTTATGAGAGCTTAGACTAAAAGGTGGACAATATCTGTGGAGGGTCGTGGCTTCTTCATCAGATATTATGTTCATCTCCCTAAGTTACCTATTCCCAGCCTTTCCCAACCCAACTCTAGTGTAAATCTACAATGTAACGGTTCAAGCCCACTGTTAACAATATTGCCCGCCTTTGAAATTTTTCCTCAACATTTTTAAAATGCATCTATTAGGGAGAGGTTTCCACACCCTTGTAAATAATGTTTCGTTCTCCTCCTCGTGAATGAGGTTAGATCCATCGTCCGGACTGAAGAATTCCAATTCATAGACAACCAATCCAATCAGGAAAAGAATCAGAAACAAGAAGAAGGTAAATGGCAGCAAATGAAATGAACATAGGGAAATAAAAGCGAAAGTGGATGAATGAATGAGGAGGAAAATGGAGGGAAATTATGACCTGGTGAAGAAGACTGGCAAGAAGCTGGAATAGTTGCTCGTCCGCCTTCCATTTCTCG

Coding sequence (CDS)

ATGGCTTCCGTCTTCGCCGCGCCGCCGTCTCAACTGGTCCTCTCTTCTCACCGCCCAAGTTTGGATCACAAAGCCTTTCTTCCTTCCATCGTCGGCGTTAAATTTCATCGGAATGGCTTTCCAATTCCTTCTTTCAGATATCAGTTTGCGTGTAATGTAATGCACCTTTGGGTTGATACCTACTTCAGCAGTCCTCTACGATCCCTCGCATTAGGCACAATTATTTCAGAAGATATCTGGACTGTTACCCTTGCAATGAGCATGTTAACATGGAAGTTCATCTGTTGCTTAGTTCTGTACAAGAACACCAAAGGATTGAAATTGAGGCAAAGATCTTTTTCTATAACAGCATCAAATTCCTCAGATGGGAATTCCACCAAGGAGGAAAATGATGGAAGTAAAGTAACTGGTGATGCCCAAGGTCCTCCATTTCTTACCATTTTGGCTGGATTTTTTGTCTTTTCCCTCGTCCTTTGGATAGTCAGTTCCTCTGTCACAACCCTTATAGCTCTAGTCGTCAAGTTGATCTCAACAAAGTAG

Protein sequence

MASVFAAPPSQLVLSSHRPSLDHKAFLPSIVGVKFHRNGFPIPSFRYQFACNVMHLWVDTYFSSPLRSLALGTIISEDIWTVTLAMSMLTWKFICCLVLYKNTKGLKLRQRSFSITASNSSDGNSTKEENDGSKVTGDAQGPPFLTILAGFFVFSLVLWIVSSSVTTLIALVVKLISTK

Homology

[Close]

BLAST of CmaCh08G005590 vs. TrEMBL
Match: A0A0A0K9W1_CUCSA (Uncharacterized protein OS=Cucumis sativus GN=Csa_7G429580 PE=4 SV=1)

HSP 1 Score: 93.6 bits (231), Expect = 2.6e-16
Identity = 57/80 (71.25%), Postives = 64/80 (80.00%), Query Frame = 1


Query: 101 KNTKGLKLRQRSFSITASNSSDGNSTKEENDGSKVTG-DAQGPPFLTILAGFFVFSLVLW 160
           KN  GL+LRQRS  I AS S+DGNS KEEN  SK +  DAQGPPFLTILAGFFV SL+LW
Sbjct: 49  KNIIGLELRQRS--IAASKSTDGNSIKEENSSSKASSDDAQGPPFLTILAGFFVLSLILW 108

Query: 161 IVSSSVTTLIALVVKLISTK 180
           I SS+VT+L+ LVVKLIS K
Sbjct: 109 IFSSAVTSLLGLVVKLISAK 126

[Close]

BLAST of CmaCh08G005590 vs. TrEMBL
Match: M5X7Q1_PRUPE (Uncharacterized protein (Fragment) OS=Prunus persica GN=PRUPE_ppa024515mg PE=4 SV=1)

HSP 1 Score: 59.3 bits (142), Expect = 5.5e-06
Identity = 36/78 (46.15%), Postives = 53/78 (67.95%), Query Frame = 1


Query: 99  LYKNTKGLKLRQRSFSITASNS--SDGNSTKEENDGSKVTGDAQGPPFLTILAGFFVFSL 158
           L +N   LK+R+   +++ASNS  S G+S ++++ G K    AQGPP LTI+AGF VF L
Sbjct: 1   LERNVLRLKIRESWHAVSASNSNPSSGDSVEDKSGGVKTNDAAQGPPLLTIVAGFVVFFL 60

Query: 159 VLWIVSSSVTTLIALVVK 175
           + WI+ S++  LI LVV+
Sbjct: 61  LFWILGSTLMWLIGLVVR 78

[Close]

BLAST of CmaCh08G005590 vs. NCBI nr
Match: gi|778728761|ref|XP_011659472.1| (PREDICTED: uncharacterized protein LOC101220885 [Cucumis sativus])

HSP 1 Score: 93.6 bits (231), Expect = 3.8e-16
Identity = 57/80 (71.25%), Postives = 64/80 (80.00%), Query Frame = 1


Query: 101 KNTKGLKLRQRSFSITASNSSDGNSTKEENDGSKVTG-DAQGPPFLTILAGFFVFSLVLW 160
           KN  GL+LRQRS  I AS S+DGNS KEEN  SK +  DAQGPPFLTILAGFFV SL+LW
Sbjct: 49  KNIIGLELRQRS--IAASKSTDGNSIKEENSSSKASSDDAQGPPFLTILAGFFVLSLILW 108

Query: 161 IVSSSVTTLIALVVKLISTK 180
           I SS+VT+L+ LVVKLIS K
Sbjct: 109 IFSSAVTSLLGLVVKLISAK 126

[Close]

BLAST of CmaCh08G005590 vs. NCBI nr
Match: gi|1009106006|ref|XP_015902239.1| (PREDICTED: uncharacterized protein LOC107435163 [Ziziphus jujuba])

HSP 1 Score: 63.9 bits (154), Expect = 3.2e-07
Identity = 37/74 (50.00%), Postives = 54/74 (72.97%), Query Frame = 1


Query: 101 KNTKGLKLRQRSFSITASNS--SDGNSTKEENDGSKVTGDAQGPPFLTILAGFFVFSLVL 160
           K+   L+  QR F++ ASN+  S G+ST+E++ G+K +  AQGPPFLTILAGF V  L++
Sbjct: 54  KDVLRLQTGQRQFAVYASNTNPSGGDSTEEKSAGTKTSDAAQGPPFLTILAGFLVLFLIV 113

Query: 161 WIVSSSVTTLIALV 173
           WIV S ++ LI+L+
Sbjct: 114 WIVGSIISWLISLI 127

[Close]

BLAST of CmaCh08G005590 vs. NCBI nr
Match: gi|596053436|ref|XP_007220770.1| (hypothetical protein PRUPE_ppa024515mg, partial [Prunus persica])

HSP 1 Score: 59.3 bits (142), Expect = 7.9e-06
Identity = 36/78 (46.15%), Postives = 53/78 (67.95%), Query Frame = 1


Query: 99  LYKNTKGLKLRQRSFSITASNS--SDGNSTKEENDGSKVTGDAQGPPFLTILAGFFVFSL 158
           L +N   LK+R+   +++ASNS  S G+S ++++ G K    AQGPP LTI+AGF VF L
Sbjct: 1   LERNVLRLKIRESWHAVSASNSNPSSGDSVEDKSGGVKTNDAAQGPPLLTIVAGFVVFFL 60

Query: 159 VLWIVSSSVTTLIALVVK 175
           + WI+ S++  LI LVV+
Sbjct: 61  LFWILGSTLMWLIGLVVR 78

The following BLAST results are available for this feature:

BLAST of CmaCh08G005590 vs. Swiss-Prot


Match Name	E-value	Identity	Description

BLAST of CmaCh08G005590 vs. TrEMBL


Match Name	E-value	Identity	Description
A0A0A0K9W1_CUCSA	2.6e-16	71.25	Uncharacterized protein OS=Cucumis sativus GN=Csa_7G429580 PE=4 SV=1	[more]
M5X7Q1_PRUPE	5.5e-06	46.15	Uncharacterized protein (Fragment) OS=Prunus persica GN=PRUPE_ppa024515mg PE=4 S...	[more]

BLAST of CmaCh08G005590 vs. TAIR10


Match Name	E-value	Identity	Description

BLAST of CmaCh08G005590 vs. NCBI nr


Match Name	E-value	Identity	Description
gi\|778728761\|ref\|XP_011659472.1\|	3.8e-16	71.25	PREDICTED: uncharacterized protein LOC101220885 [Cucumis sativus]	[more]
gi\|1009106006\|ref\|XP_015902239.1\|	3.2e-07	50.00	PREDICTED: uncharacterized protein LOC107435163 [Ziziphus jujuba]	[more]
gi\|596053436\|ref\|XP_007220770.1\|	7.9e-06	46.15	hypothetical protein PRUPE_ppa024515mg, partial [Prunus persica]	[more]

GO Annotation

GO Assignments

This gene is annotated with the following GO terms.

Category	Term Accession	Term Name
biological_process	GO:0008150	biological_process
cellular_component	GO:0005575	cellular_component
cellular_component	GO:0016021	integral component of membrane
molecular_function	GO:0003674	molecular_function

Relationships

The following mRNA feature(s) are a part of this gene:


Feature Name	Unique Name	Type
CmaCh08G005590.1	CmaCh08G005590.1	mRNA

Synteny

The following gene(s) are orthologous to this gene:


Gene	Orthologue	Organism	Block
CmaCh08G005590	Cucsa.049960	Cucumber (Gy14) v1	cgycmaB0052
CmaCh08G005590	Csa7G429580	Cucumber (Chinese Long) v2	cmacuB914
CmaCh08G005590	MELO3C023507	Melon (DHL92) v3.5.1	cmameB824
CmaCh08G005590	ClCG09G003740	Watermelon (Charleston Gray)	cmawcgB787
CmaCh08G005590	CSPI07G19650	Wild cucumber (PI 183967)	cmacpiB934
CmaCh08G005590	CmoCh08G005510	Cucurbita moschata (Rifu)	cmacmoB913
CmaCh08G005590	CmoCh17G008980	Cucurbita moschata (Rifu)	cmacmoB896
CmaCh08G005590	Lsi02G026210	Bottle gourd (USVL1VR-Ls)	cmalsiB822
CmaCh08G005590	Cp4.1LG12g07070	Cucurbita pepo (Zucchini)	cmacpeB902
CmaCh08G005590	Cp4.1LG17g08470	Cucurbita pepo (Zucchini)	cmacpeB917
CmaCh08G005590	CsaV3_7G031470	Cucumber (Chinese Long) v3	cmacucB1084
CmaCh08G005590	Cla97C09G165990	Watermelon (97103) v2	cmawmbB941
CmaCh08G005590	Bhi09G000481	Wax gourd	cmawgoB1128
CmaCh08G005590	CsGy7G017970	Cucumber (Gy14) v2	cgybcmaB973
CmaCh08G005590	Carg18707	Silver-seed gourd	carcmaB0499
CmaCh08G005590	Carg13474	Silver-seed gourd	carcmaB0628

The following gene(s) are paralogous to this gene:


Gene	Paralogue	Organism	Block
CmaCh08G005590	CmaCh17G009270	Cucurbita maxima (Rimu)	cmacmaB382

The following block(s) are covering this gene:


Gene	Organism	Block
CmaCh08G005590	Cucumber (Gy14) v2	cgybcmaB144
CmaCh08G005590	Cucumber (Gy14) v2	cgybcmaB456
CmaCh08G005590	Melon (DHL92) v3.6.1	cmamedB922
CmaCh08G005590	Silver-seed gourd	carcmaB0734
CmaCh08G005590	Silver-seed gourd	carcmaB1273
CmaCh08G005590	Cucumber (Chinese Long) v3	cmacucB1042
CmaCh08G005590	Watermelon (97103) v2	cmawmbB910
CmaCh08G005590	Cucurbita maxima (Rimu)	cmacmaB120
CmaCh08G005590	Cucurbita maxima (Rimu)	cmacmaB293
CmaCh08G005590	Cucurbita maxima (Rimu)	cmacmaB440
CmaCh08G005590	Cucurbita maxima (Rimu)	cmacmaB494
CmaCh08G005590	Cucurbita maxima (Rimu)	cmacmaB513
CmaCh08G005590	Cucurbita moschata (Rifu)	cmacmoB877
CmaCh08G005590	Cucurbita moschata (Rifu)	cmacmoB879
CmaCh08G005590	Cucurbita moschata (Rifu)	cmacmoB905
CmaCh08G005590	Cucurbita moschata (Rifu)	cmacmoB908
CmaCh08G005590	Wild cucumber (PI 183967)	cmacpiB904
CmaCh08G005590	Cucumber (Chinese Long) v2	cmacuB886
CmaCh08G005590	Watermelon (Charleston Gray)	cmawcgB792
CmaCh08G005590	Watermelon (97103) v1	cmawmB857
CmaCh08G005590	Watermelon (97103) v1	cmawmB862
CmaCh08G005590	Cucurbita pepo (Zucchini)	cmacpeB913
CmaCh08G005590	Bottle gourd (USVL1VR-Ls)	cmalsiB831