CmaCh17G009270 (gene) Cucurbita maxima (Rimu)

Overview
NameCmaCh17G009270
Typegene
OrganismCucurbita maxima (Cucurbita maxima (Rimu))
DescriptionUPF0182 protein jk1603, putative
LocationCma_Chr17 : 6951138 .. 6953544 (+)
Genome Viewer
Sequences
The following sequences are available for this feature:

Gene sequence (with intron)

Legend: exonfive_prime_UTRCDSthree_prime_UTR
Hold the cursor over a type above to highlight its positions in the sequence below.
ATGACACGTGGATTACGAATAGATTAAGCACCATCCGTTCTCCGCCCACAGTTTCTTGTGAGCTCGCTTCTCTTTGGAAGTTCCAAAGTCTTTGTAATACGAGTGAAGGTGAATGGCTTCCATTTTCGCTGCGCCGCCGTCTCGACTGAATCTCACTTCTCGCCCAAGTTTGATTCACGGAGCTGTTCTTCCCTCCTCCATCGCCGGCATTCAATATCACTCCAATGCCTTTCCAATTCCTTCTTTCAGGTATCCATCGTTATTCGATTCCTCGCATTCAATTTAAATGATCTCTCAGGAGATATCGGGATTTCTATATATGCTGGAATGTGACTAGTGAGCTCGTTAACAATGAAGTTCATCTGATAATTAATTCTATAAAGTGGATCGGCTTTGATTCTTTTGTTGAAAATGGAATTTCCATTTTAGCAGGTAGTTGCTAATTCCTAATTGCTTTTGGCTGCTAACGCCAAGTGCTTCTACTGGTATTAGGTATTGTTTTTCAGAATTCTTATATTATAAGTTTCTATGTCACGCACGTTTAATTTGATTCTTACTTGATCAGTTTTCTTCGATCCCTCGCATTCAACGTTTCGAATCACATAGGATATACAGATCGTAATGTTGAATTGAGCATGTTTGCAGAATCCTATTACATTTCTGTGTTGAAAATGGAATTGGACGATAGCTGCTGCCTTGCGGATTCTTAATTGGTTTCGGCTACTAAAGCAAACAGCTTATACTAAATCCTGGTTGCTTTTGTTTTGGCAAGTAGCGAAAAAGAGCTTATACTAGTATTAGGATTGAGGCTTTATTTTGCTGATCTTGTTCGACATCTAATGGGATGAATCTTTGATTTGCTACCCAATTGGTCACTGAACGAGCATGTATAGAATTTTGTCCATTGATTTTTAGTTTCCGGATAAGACTAGGGAAAGTCTTATTAGTTCTTCCTGAAAGCTCTTCTTTGATAGGGAAGTAGTTATAATTAATATGTTCGGGAAATGATTGTCCTGAAATGGCCTATATGGTATCTTGAAAAAGAATTTGGATTTTTTTGGGTTAACCACTGCTAAAGCAAAGGGGCAGGAAATAGCAGACCAGAATCCGTCAACTGAGCTGCTAGTCCAACTTCTTGTTGGATGCACAAAGTATGCTCTTGTTGGATGCACAAAGTATGCTCTTGTTGATGCACAAAAACTGTTAAAATGAAGTGAAATGAGTCTGTAACAGCCCAAGCCCACCGCTAGCAGCTATTGCCCGCTTTGGCCCATTGCGTATCGCCGTCAGTTTCACAGTTTTTAAAACGCGTCTGTTAGGGAGAGGGTTCCACACTCTTATAAGGAATGTTCAACCGTTGTGGGATCTCACAATCCACCCCCCTTGGAGGTCTAGCGTCCTCGCTAGCATACCGCTTGGTGTTTGGCTTTGATACCATTTGTAACAGCCCAAACCCACCACTAATAGATATTGTCCGTTTTGGCTCGTTACGTATTACCATCAGCCTCATAATTTTTAGAACACGTCAATTAGGGAGAGGTTTTCACACCCTTATAAGGAATGTTTCATTCTCCTCTCCAACCGATGTGGGATCTCACATATCAAACCCATCAGCATCTCTAAATTCTTACAAGCCAAGGGGATTCTGTCTTTTCAATGATACGGAGTTTCCTCTTTAAAATCCTCTGGAAGTACTGAAGTGGAAAATACAGGTTCCTATCATTCCTGGTTCCATCTTCATTGTCCTCTGTTATTCGTTTAGGTTTTCGCTTGATCTACAAATCTAAATTCTAGACACAATGAGCCTGAGATGACTGATATTTGTTTTCACAATATTGCTACTCAGATTAGTGCTTGCGTGATTCCTTTTATGCAGGTACAGGAACACCAAAGGATTGGAATTGAGTCCAAGATCTTTTTCTATAACAGCCTCAAATTCCTCAGACGGAAATTCCATCGAGGAGGAAAATGGTTCGAGTAAAGCAAGTAGTGACGCCCAAGGTCCTCCATTTCTTACTATCTTGGCTGGAATCTTTGTCTTTTCCCTCCTACTCTGGATGCTCAGTTCTGCTGCCACTTCACTTATAGGTCTAGTCGTCAAGCTGATCTCAACATAGTATGCCATTATTGGCATAATTCATGTTGCCTTAGAAGCTTAAATCCGTGTGGTTATATTCCTATCACACAACTCACTTTTTAGCTAGTTTTTTTAGCTTACTTCTAATGAATAGTTTTTATTTTCATCTCTTTTATGCCTTGCTTCAGCCTTCAACTCTGTTTAATTGTGAGGAAGGCATTCTTCACAGGCAGGTGACTCCATAAACTATAATTAAATGGACTTAACGTATTGTGTAGACTATCCCATCTATTAAAATGTCCAAGTCAAGCCTCCTTAGGTGATCCGTCT

mRNA sequence

ATGACACGTGGATTACGAATAGATTAAGCACCATCCGTTCTCCGCCCACAGTTTCTTGTGAGCTCGCTTCTCTTTGGAAGTTCCAAAGTCTTTGTAATACGAGTGAAGGTGAATGGCTTCCATTTTCGCTGCGCCGCCGTCTCGACTGAATCTCACTTCTCGCCCAAGTTTGATTCACGGAGCTGTTCTTCCCTCCTCCATCGCCGGCATTCAATATCACTCCAATGCCTTTCCAATTCCTTCTTTCAGGTACAGGAACACCAAAGGATTGGAATTGAGTCCAAGATCTTTTTCTATAACAGCCTCAAATTCCTCAGACGGAAATTCCATCGAGGAGGAAAATGGTTCGAGTAAAGCAAGTAGTGACGCCCAAGGTCCTCCATTTCTTACTATCTTGGCTGGAATCTTTGTCTTTTCCCTCCTACTCTGGATGCTCAGTTCTGCTGCCACTTCACTTATAGGTCTAGTCGTCAAGCTGATCTCAACATAGTATGCCATTATTGGCATAATTCATGTTGCCTTAGAAGCTTAAATCCGTGTGGTTATATTCCTATCACACAACTCACTTTTTAGCTAGTTTTTTTAGCTTACTTCTAATGAATAGTTTTTATTTTCATCTCTTTTATGCCTTGCTTCAGCCTTCAACTCTGTTTAATTGTGAGGAAGGCATTCTTCACAGGCAGGTGACTCCATAAACTATAATTAAATGGACTTAACGTATTGTGTAGACTATCCCATCTATTAAAATGTCCAAGTCAAGCCTCCTTAGGTGATCCGTCT

Coding sequence (CDS)

ATGGCTTCCATTTTCGCTGCGCCGCCGTCTCGACTGAATCTCACTTCTCGCCCAAGTTTGATTCACGGAGCTGTTCTTCCCTCCTCCATCGCCGGCATTCAATATCACTCCAATGCCTTTCCAATTCCTTCTTTCAGGTACAGGAACACCAAAGGATTGGAATTGAGTCCAAGATCTTTTTCTATAACAGCCTCAAATTCCTCAGACGGAAATTCCATCGAGGAGGAAAATGGTTCGAGTAAAGCAAGTAGTGACGCCCAAGGTCCTCCATTTCTTACTATCTTGGCTGGAATCTTTGTCTTTTCCCTCCTACTCTGGATGCTCAGTTCTGCTGCCACTTCACTTATAGGTCTAGTCGTCAAGCTGATCTCAACATAG

Protein sequence

MASIFAAPPSRLNLTSRPSLIHGAVLPSSIAGIQYHSNAFPIPSFRYRNTKGLELSPRSFSITASNSSDGNSIEEENGSSKASSDAQGPPFLTILAGIFVFSLLLWMLSSAATSLIGLVVKLIST
Homology
[Close]
BLAST of CmaCh17G009270 vs. TrEMBL
Match: A0A0A0K9W1_CUCSA (Uncharacterized protein OS=Cucumis sativus GN=Csa_7G429580 PE=4 SV=1)

HSP 1 Score: 157.9 bits (398), Expect = 7.9e-36
Identity = 95/126 (75.40%), Postives = 103/126 (81.75%), Query Frame = 1 

Query: 1   MASIFAAPPSRLNLTSRPSLIHGAVLPSSIAGIQYHSNAFPIPSFRYR-NTKGLELSPRS 60
           MAS+FAAPPS+LNLTSR S IH A LPS IA IQ+HSNA P PSFRYR N  GLEL  RS
Sbjct: 1   MASVFAAPPSQLNLTSRRSSIHRAFLPSYIASIQFHSNASPFPSFRYRKNIIGLELRQRS 60

Query: 61  FSITASNSSDGNSIEEENGSSKASS-DAQGPPFLTILAGIFVFSLLLWMLSSAATSLIGL 120
             I AS S+DGNSI+EEN SSKASS DAQGPPFLTILAG FV SL+LW+ SSA TSL+GL
Sbjct: 61  --IAASKSTDGNSIKEENSSSKASSDDAQGPPFLTILAGFFVLSLILWIFSSAVTSLLGL 120

Query: 121 VVKLIS 125
           VVKLIS
Sbjct: 121 VVKLIS 124

[Close]
BLAST of CmaCh17G009270 vs. TrEMBL
Match: M5X7Q1_PRUPE (Uncharacterized protein (Fragment) OS=Prunus persica GN=PRUPE_ppa024515mg PE=4 SV=1)

HSP 1 Score: 58.2 bits (139), Expect = 8.6e-06
Identity = 36/76 (47.37%), Postives = 50/76 (65.79%), Query Frame = 1 

Query: 48  RNTKGLELSPRSFSITASNS--SDGNSIEEENGSSKASSDAQGPPFLTILAGIFVFSLLL 107
           RN   L++     +++ASNS  S G+S+E+++G  K +  AQGPP LTI+AG  VF LL 
Sbjct: 3   RNVLRLKIRESWHAVSASNSNPSSGDSVEDKSGGVKTNDAAQGPPLLTIVAGFVVFFLLF 62

Query: 108 WMLSSAATSLIGLVVK 122
           W+L S    LIGLVV+
Sbjct: 63  WILGSTLMWLIGLVVR 78

[Close]
BLAST of CmaCh17G009270 vs. NCBI nr
Match: gi|778728761|ref|XP_011659472.1| (PREDICTED: uncharacterized protein LOC101220885 [Cucumis sativus])

HSP 1 Score: 157.9 bits (398), Expect = 1.1e-35
Identity = 95/126 (75.40%), Postives = 103/126 (81.75%), Query Frame = 1 

Query: 1   MASIFAAPPSRLNLTSRPSLIHGAVLPSSIAGIQYHSNAFPIPSFRYR-NTKGLELSPRS 60
           MAS+FAAPPS+LNLTSR S IH A LPS IA IQ+HSNA P PSFRYR N  GLEL  RS
Sbjct: 1   MASVFAAPPSQLNLTSRRSSIHRAFLPSYIASIQFHSNASPFPSFRYRKNIIGLELRQRS 60

Query: 61  FSITASNSSDGNSIEEENGSSKASS-DAQGPPFLTILAGIFVFSLLLWMLSSAATSLIGL 120
             I AS S+DGNSI+EEN SSKASS DAQGPPFLTILAG FV SL+LW+ SSA TSL+GL
Sbjct: 61  --IAASKSTDGNSIKEENSSSKASSDDAQGPPFLTILAGFFVLSLILWIFSSAVTSLLGL 120

Query: 121 VVKLIS 125
           VVKLIS
Sbjct: 121 VVKLIS 124

[Close]
BLAST of CmaCh17G009270 vs. NCBI nr
Match: gi|645295443|ref|XP_008245799.1| (PREDICTED: uncharacterized protein LOC103343947 [Prunus mume])

HSP 1 Score: 59.7 bits (143), Expect = 4.2e-06
Identity = 46/123 (37.40%), Postives = 69/123 (56.10%), Query Frame = 1 

Query: 1   MASIFAAPPSRLNLTSRPSLIHGAVLPSSIAGIQYHSNAFPIPSFRYRNTKGLELSPRSF 60
           MAS+ AA  +RL+      +    + P + +       A P+     RN   L++     
Sbjct: 3   MASVLAAAQARLSSQLLCPIPQNQI-PITHSVKSSAVKAAPVDFSLERNVLRLKIRESWH 62

Query: 61  SITA--SNSSDGNSIEEENGSSKASSDAQGPPFLTILAGIFVFSLLLWMLSSAATSLIGL 120
           +++A  SNSS+G+S+E+++G  K +  AQGPP LTI+AG  VF LL W+L S    LIGL
Sbjct: 63  AVSASNSNSSNGDSVEDKSGGVKTNDAAQGPPLLTIVAGFVVFFLLFWILGSILMWLIGL 122

Query: 121 VVK 122
           VV+
Sbjct: 123 VVR 124

[Close]
BLAST of CmaCh17G009270 vs. NCBI nr
Match: gi|645280921|ref|XP_008245399.1| (PREDICTED: uncharacterized protein LOC103343516 [Prunus mume])

HSP 1 Score: 59.3 bits (142), Expect = 5.5e-06
Identity = 38/85 (44.71%), Postives = 54/85 (63.53%), Query Frame = 1 

Query: 39  AFPIPSFRYRNTKGLELSPRSFSITA--SNSSDGNSIEEENGSSKASSDAQGPPFLTILA 98
           A P+     RN   L++     +++A  SNSS+G+S+E+++G  K +  AQGPP LTI+A
Sbjct: 40  AAPVDFSLERNVLRLKIRESWHAVSASNSNSSNGDSVEDKSGGVKTNDAAQGPPLLTIVA 99

Query: 99  GIFVFSLLLWMLSSAATSLIGLVVK 122
           G  VF LL W+L S    LIGLVV+
Sbjct: 100 GFVVFFLLFWILGSILMWLIGLVVR 124

The following BLAST results are available for this feature:
BLAST of CmaCh17G009270 vs. Swiss-Prot
Match NameE-valueIdentityDescription
BLAST of CmaCh17G009270 vs. TrEMBL
Match NameE-valueIdentityDescription
A0A0A0K9W1_CUCSA7.9e-3675.40Uncharacterized protein OS=Cucumis sativus GN=Csa_7G429580 PE=4 SV=1[more]
M5X7Q1_PRUPE8.6e-0647.37Uncharacterized protein (Fragment) OS=Prunus persica GN=PRUPE_ppa024515mg PE=4 S... [more]
BLAST of CmaCh17G009270 vs. TAIR10
Match NameE-valueIdentityDescription
BLAST of CmaCh17G009270 vs. NCBI nr
Match NameE-valueIdentityDescription
gi|778728761|ref|XP_011659472.1|1.1e-3575.40PREDICTED: uncharacterized protein LOC101220885 [Cucumis sativus][more]
gi|645295443|ref|XP_008245799.1|4.2e-0637.40PREDICTED: uncharacterized protein LOC103343947 [Prunus mume][more]
gi|645280921|ref|XP_008245399.1|5.5e-0644.71PREDICTED: uncharacterized protein LOC103343516 [Prunus mume][more]
GO Annotation
GO Assignments
This gene is annotated with the following GO terms.
Category Term Accession Term Name
biological_process GO:0008150 biological_process
cellular_component GO:0005575 cellular_component
cellular_component GO:0016021 integral component of membrane
molecular_function GO:0003674 molecular_function
Relationships

The following mRNA feature(s) are a part of this gene:

Feature NameUnique NameType
CmaCh17G009270.1CmaCh17G009270.1mRNA


Synteny
The following gene(s) are orthologous to this gene:
GeneOrthologueOrganismBlock
CmaCh17G009270Cucsa.049960Cucumber (Gy14) v1cgycmaB0050
CmaCh17G009270Csa7G429580Cucumber (Chinese Long) v2cmacuB388
CmaCh17G009270MELO3C023507Melon (DHL92) v3.5.1cmameB326
CmaCh17G009270ClCG09G003740Watermelon (Charleston Gray)cmawcgB306
CmaCh17G009270CSPI07G19650Wild cucumber (PI 183967)cmacpiB392
CmaCh17G009270CmoCh08G005510Cucurbita moschata (Rifu)cmacmoB374
CmaCh17G009270CmoCh17G008980Cucurbita moschata (Rifu)cmacmoB353
CmaCh17G009270Lsi02G026210Bottle gourd (USVL1VR-Ls)cmalsiB348
CmaCh17G009270Cp4.1LG12g07070Cucurbita pepo (Zucchini)cmacpeB371
CmaCh17G009270CsaV3_7G031470Cucumber (Chinese Long) v3cmacucB0462
CmaCh17G009270Cla97C09G165990Watermelon (97103) v2cmawmbB387
CmaCh17G009270Bhi09G000481Wax gourdcmawgoB0487
CmaCh17G009270CsGy7G017970Cucumber (Gy14) v2cgybcmaB925
CmaCh17G009270Carg13474Silver-seed gourdcarcmaB0625
CmaCh17G009270Carg18707Silver-seed gourdcarcmaB0497
The following gene(s) are paralogous to this gene:
GeneParalogueOrganismBlock
CmaCh17G009270CmaCh08G005590Cucurbita maxima (Rimu)cmacmaB382
The following block(s) are covering this gene:
GeneOrganismBlock
CmaCh17G009270Melon (DHL92) v3.6.1cmamedB379
CmaCh17G009270Melon (DHL92) v3.6.1cmamedB392
CmaCh17G009270Silver-seed gourdcarcmaB0730
CmaCh17G009270Silver-seed gourdcarcmaB1133
CmaCh17G009270Watermelon (97103) v2cmawmbB360
CmaCh17G009270Cucurbita maxima (Rimu)cmacmaB250
CmaCh17G009270Cucurbita maxima (Rimu)cmacmaB360
CmaCh17G009270Cucurbita maxima (Rimu)cmacmaB364
CmaCh17G009270Cucurbita moschata (Rifu)cmacmoB351
CmaCh17G009270Cucurbita moschata (Rifu)cmacmoB354
CmaCh17G009270Cucurbita moschata (Rifu)cmacmoB358
CmaCh17G009270Wild cucumber (PI 183967)cmacpiB365
CmaCh17G009270Cucumber (Chinese Long) v2cmacuB361
CmaCh17G009270Melon (DHL92) v3.5.1cmameB333
CmaCh17G009270Watermelon (Charleston Gray)cmawcgB314
CmaCh17G009270Watermelon (97103) v1cmawmB328
CmaCh17G009270Watermelon (97103) v1cmawmB336
CmaCh17G009270Cucurbita pepo (Zucchini)cmacpeB399
CmaCh17G009270Cucurbita pepo (Zucchini)cmacpeB375
CmaCh17G009270Cucurbita pepo (Zucchini)cmacpeB376
CmaCh17G009270Cucurbita pepo (Zucchini)cmacpeB404
CmaCh17G009270Bottle gourd (USVL1VR-Ls)cmalsiB351