Cucsa.049960 (gene) Cucumber (Gy14) v1

Overview
NameCucsa.049960
Typegene
OrganismCucumis sativus (Cucumber (Gy14) v1)
DescriptionUnknown protein
Locationscaffold00551 : 97762 .. 99724 (+)
Genome Viewer
Sequences
The following sequences are available for this feature:

Gene sequence (with intron)

Legend: five_prime_UTRCDSthree_prime_UTR
Hold the cursor over a type above to highlight its positions in the sequence below.
GAAGAATGGCTTCCGTCTTCGCTGCGCCGCCGTCTCAACTGAATCTCACATCCCGCCGGAGTTCGATTCACCGAGCCTTTCTTCCTTCTTACATTGCCAGCATTCAATTTCACTCGAACGCCTCTCCATTTCCTTCTTTCAGGTATCCTTCGTGTAATCACTCTTCTTCGATTCCTCGTATTCAACATTTTAAATCTCTTAGAAAATTTCGGGATTTTTATATGCTGTAATGAGACTAATGAGCATGCTTGCGATGAAGTTCATCTGTTACTTAGTCCTGTAAAGTGGATCGACTGTTTATTTTTGTTGAAAATGGAATGCAGCTGGTAGTTGCTAATTCCTAATTGCTTTTGGCTTCTAACGCAAAGTGCTTCACTAGTATTTGGTTTTATTTTTCTGAGTTTATATTTGACATACCTTTGATTTGATTACTACTTAAGCAGTTTTCTTCGATCTCGGTATTCAACATCTATAATCTCAGGGATATCCGGATTTTTATGTGTTGAATGGAGCATGTTAGCATTAAAGTGAATCCTCCTTGATTTGTGTGTTGAAAGTGGAATTGAACGATTGTCGCTGGCTTGCTGGTTCCTAGTTGGTTTCAGCTACTGACGCAAACAGCTTATTAACGTTCTGAATGTTTTATAGTTTAAATGTTGTGAACCTTTGATTTGATACCTATTTTAGCAGTCCTTTTCGACAAATTGCTTCTGGCTGGCATGTACAGTTTCAAAGGATATCTGAAGTTATTATTTGGTGTTGCACTGTTGTGAGCATTTTAGCATTCAAGTTCGTCTATAACTTTGTTATGTTAAGGTAATCCATTTTGATTCTTGTGCTGAAAATTGAATTTGAAGGTAGTTACTAAACCCTAAGCCCCAATTAAACACGCACAGCCCTCGGGCCAAACAAGGAAGCTCACTCCACTCCACCTAAACCCTCAGCCCAAACAGGCCCAAAGCTTAAATAGTGTTAGGATTGAGACTTCCTGATCTTGTTCGACGTCTACATGGGATGGATCTTTGATTTGATACTTATTTGGTCATTACATGAGCATGAATAGAACTTTGTCCATTATTTGTTGGTTTCTGGTGCAAATAGGGAAAGTCTTATTTGTTCGTTCTGAAGGCTCTTCTCTAATAGTGAAGCAGTTCTACTGTAGATTTCCGGGAAATAATAATTCTACAATGGCCTATATGGTTTCTTGAAAATAGAATTAAAACCTATTATCTTCTCAAATTGTCAGTTGACTCATCTGTGCATTCTCTGCCAAGTTACTCTTTAGAGTAATCTTGTGGAGTATTGGGGTGGAAAaTAAAATTTCCCATCATTCTTGGTTCCATCTTTTAGGATCTTTATTGGCCTTTGTCTGTTTAGCTTTTCGCTTTTTGGTTTCTTTTCATATCATTTATTACTGGTAATTATTTACTCAGAAAGATATATATGGCAGGCTTGTATAAGGGCCAAACCAGTATCTGAAATTCTCTTTTCACATGCTAAGCAGATTTACTGGAAACTATAATACATTTAAGAATTAAGAGTATGAAATGACTGATATTTGTATTCGCAATATTTACTTAGACGAGTGCTTATGTGATTTCTTTTATACAGGTACAGGAAGAACATCATTGGATTAGAATTAAGGCAAAGATCTATAGCAGCCTCAAAATCCACAGATGGGAATTCCATCAAGGAGGAAAATAGTTCGAGTAAAGCAAGTAGTGATGATGCCCAAGGTCCTCCATTTCTTACCATTTTAGCTGGATTTTTTGTCTTATCCCTTATACTATGGATATTCAGTTCTGCTGTTACGTCACTTTTAGGTCTAGTCGTCAAGCTGATCTCAGCAAAATAATGTCGCATAATTGGAATAGTTTCATGTTTCTAAGCATAAATCTGTATGGTTATATTTGTAGCAAAACTTACTTTTTAGCCAGTTTTAGCTTTATTTGTAGTGAATAGA

mRNA sequence

GAAGAATGGCTTCCGTCTTCGCTGCGCCGCCGTCTCAACTGAATCTCACATCCCGCCGGAGTTCGATTCACCGAGCCTTTCTTCCTTCTTACATTGCCAGCATTCAATTTCACTCGAACGCCTCTCCATTTCCTTCTTTCAGGTACAGGAAGAACATCATTGGATTAGAATTAAGGCAAAGATCTATAGCAGCCTCAAAATCCACAGATGGGAATTCCATCAAGGAGGAAAATAGTTCGAGTAAAGCAAGTAGTGATGATGCCCAAGGTCCTCCATTTCTTACCATTTTAGCTGGATTTTTTGTCTTATCCCTTATACTATGGATATTCAGTTCTGCTGTTACGTCACTTTTAGGTCTAGTCGTCAAGCTGATCTCAGCAAAATAATGTCGCATAATTGGAATAGTTTCATGTTTCTAAGCATAAATCTGTATGGTTATATTTGTAGCAAAACTTACTTTTTAGCCAGTTTTAGCTTTATTTGTAGTGAATAGA

Coding sequence (CDS)

ATGGCTTCCGTCTTCGCTGCGCCGCCGTCTCAACTGAATCTCACATCCCGCCGGAGTTCGATTCACCGAGCCTTTCTTCCTTCTTACATTGCCAGCATTCAATTTCACTCGAACGCCTCTCCATTTCCTTCTTTCAGGTACAGGAAGAACATCATTGGATTAGAATTAAGGCAAAGATCTATAGCAGCCTCAAAATCCACAGATGGGAATTCCATCAAGGAGGAAAATAGTTCGAGTAAAGCAAGTAGTGATGATGCCCAAGGTCCTCCATTTCTTACCATTTTAGCTGGATTTTTTGTCTTATCCCTTATACTATGGATATTCAGTTCTGCTGTTACGTCACTTTTAGGTCTAGTCGTCAAGCTGATCTCAGCAAAATAA

Protein sequence

MASVFAAPPSQLNLTSRRSSIHRAFLPSYIASIQFHSNASPFPSFRYRKNIIGLELRQRSIAASKSTDGNSIKEENSSSKASSDDAQGPPFLTILAGFFVLSLILWIFSSAVTSLLGLVVKLISAK*
Homology
[Close]
BLAST of Cucsa.049960 vs. TrEMBL
Match: A0A0A0K9W1_CUCSA (Uncharacterized protein OS=Cucumis sativus GN=Csa_7G429580 PE=4 SV=1)

HSP 1 Score: 241.5 bits (615), Expect = 5.6e-61
Identity = 126/126 (100.00%), Postives = 126/126 (100.00%), Query Frame = 1 

Query: 1   MASVFAAPPSQLNLTSRRSSIHRAFLPSYIASIQFHSNASPFPSFRYRKNIIGLELRQRS 60
           MASVFAAPPSQLNLTSRRSSIHRAFLPSYIASIQFHSNASPFPSFRYRKNIIGLELRQRS
Sbjct: 1   MASVFAAPPSQLNLTSRRSSIHRAFLPSYIASIQFHSNASPFPSFRYRKNIIGLELRQRS 60

Query: 61  IAASKSTDGNSIKEENSSSKASSDDAQGPPFLTILAGFFVLSLILWIFSSAVTSLLGLVV 120
           IAASKSTDGNSIKEENSSSKASSDDAQGPPFLTILAGFFVLSLILWIFSSAVTSLLGLVV
Sbjct: 61  IAASKSTDGNSIKEENSSSKASSDDAQGPPFLTILAGFFVLSLILWIFSSAVTSLLGLVV 120

Query: 121 KLISAK 127
           KLISAK
Sbjct: 121 KLISAK 126

[Close]
BLAST of Cucsa.049960 vs. TrEMBL
Match: A0A067DWU9_CITSI (Uncharacterized protein OS=Citrus sinensis GN=CISIN_1g033511mg PE=4 SV=1)

HSP 1 Score: 66.2 bits (160), Expect = 3.2e-08
Identity = 44/91 (48.35%), Postives = 58/91 (63.74%), Query Frame = 1 

Query: 40  SPFPS-FRYRKN-IIGLELRQR--SIAASKST-DGNSIKEENSSSKASSDDAQGPPFLTI 99
           S  PS FR++ N  + L+ RQR  ++ AS ST  G    +E S +KAS D +QGPPFLTI
Sbjct: 28  SSLPSNFRFKSNSTVRLQARQRFSTVFASNSTPSGGDSLQEKSDTKAS-DASQGPPFLTI 87

Query: 100 LAGFFVLSLILWIFSSAVTSLLGLVVKLISA 126
           LAGF V  L+ WI  S V  L GL+V+L+ +
Sbjct: 88  LAGFVVSVLVCWIVGSIVLWLTGLIVQLLKS 117

[Close]
BLAST of Cucsa.049960 vs. TrEMBL
Match: V4SWI2_9ROSI (Uncharacterized protein OS=Citrus clementina GN=CICLE_v10033102mg PE=4 SV=1)

HSP 1 Score: 66.2 bits (160), Expect = 3.2e-08
Identity = 44/91 (48.35%), Postives = 58/91 (63.74%), Query Frame = 1 

Query: 40  SPFPS-FRYRKN-IIGLELRQR--SIAASKST-DGNSIKEENSSSKASSDDAQGPPFLTI 99
           S  PS FR++ N  + L+ RQR  ++ AS ST  G    +E S +KAS D +QGPPFLTI
Sbjct: 28  SSLPSNFRFKSNSTVRLQARQRFSTVFASNSTPSGGDSLQEKSDTKAS-DASQGPPFLTI 87

Query: 100 LAGFFVLSLILWIFSSAVTSLLGLVVKLISA 126
           LAGF V  L+ WI  S V  L GL+V+L+ +
Sbjct: 88  LAGFVVSVLVCWIVGSIVLWLTGLIVQLLKS 117

[Close]
BLAST of Cucsa.049960 vs. TrEMBL
Match: M5X7Q1_PRUPE (Uncharacterized protein (Fragment) OS=Prunus persica GN=PRUPE_ppa024515mg PE=4 SV=1)

HSP 1 Score: 58.9 bits (141), Expect = 5.1e-06
Identity = 31/77 (40.26%), Postives = 54/77 (70.13%), Query Frame = 1 

Query: 49  KNIIGLELRQ--RSIAASKS--TDGNSIKEENSSSKASSDDAQGPPFLTILAGFFVLSLI 108
           +N++ L++R+   +++AS S  + G+S+++++   K ++D AQGPP LTI+AGF V  L+
Sbjct: 3   RNVLRLKIRESWHAVSASNSNPSSGDSVEDKSGGVK-TNDAAQGPPLLTIVAGFVVFFLL 62

Query: 109 LWIFSSAVTSLLGLVVK 122
            WI  S +  L+GLVV+
Sbjct: 63  FWILGSTLMWLIGLVVR 78

[Close]
BLAST of Cucsa.049960 vs. TrEMBL
Match: A5AGI7_VITVI (Citrate synthase OS=Vitis vinifera GN=VITISV_022331 PE=3 SV=1)

HSP 1 Score: 58.2 bits (139), Expect = 8.7e-06
Identity = 40/115 (34.78%), Postives = 50/115 (43.48%), Query Frame = 1 

Query: 7   APPSQLNLTSRRSSIHRAFLPSYIASIQFHSNASPFPSFRYRKNIIGLELRQRSIAASKS 66
           AP  Q          HRA     +  +   SN    P      N + L +RQR      S
Sbjct: 777 APSFQPQTQLLNLGFHRAISSPQLPPV---SNFPCTPLSSRFNNELRLRVRQRMAVVFAS 836

Query: 67  TDGNSIKEENSSSKASSDDAQGPPFLTILAGFFVLSLILWIFSSAVTSLLGLVVK 122
              N++      SK    DAQGPPFLTILAG  +  L+ W+  S V  L GL+VK
Sbjct: 837 ---NTVYPVGGDSKKEKSDAQGPPFLTILAGLLLFLLVFWLLGSIVMWLFGLIVK 885

[Close]
BLAST of Cucsa.049960 vs. NCBI nr
Match: gi|778728761|ref|XP_011659472.1| (PREDICTED: uncharacterized protein LOC101220885 [Cucumis sativus])

HSP 1 Score: 241.5 bits (615), Expect = 8.0e-61
Identity = 126/126 (100.00%), Postives = 126/126 (100.00%), Query Frame = 1 

Query: 1   MASVFAAPPSQLNLTSRRSSIHRAFLPSYIASIQFHSNASPFPSFRYRKNIIGLELRQRS 60
           MASVFAAPPSQLNLTSRRSSIHRAFLPSYIASIQFHSNASPFPSFRYRKNIIGLELRQRS
Sbjct: 1   MASVFAAPPSQLNLTSRRSSIHRAFLPSYIASIQFHSNASPFPSFRYRKNIIGLELRQRS 60

Query: 61  IAASKSTDGNSIKEENSSSKASSDDAQGPPFLTILAGFFVLSLILWIFSSAVTSLLGLVV 120
           IAASKSTDGNSIKEENSSSKASSDDAQGPPFLTILAGFFVLSLILWIFSSAVTSLLGLVV
Sbjct: 61  IAASKSTDGNSIKEENSSSKASSDDAQGPPFLTILAGFFVLSLILWIFSSAVTSLLGLVV 120

Query: 121 KLISAK 127
           KLISAK
Sbjct: 121 KLISAK 126

[Close]
BLAST of Cucsa.049960 vs. NCBI nr
Match: gi|470141540|ref|XP_004306488.1| (PREDICTED: uncharacterized protein LOC101307043 [Fragaria vesca subsp. vesca])

HSP 1 Score: 68.2 bits (165), Expect = 1.2e-08
Identity = 40/88 (45.45%), Postives = 59/88 (67.05%), Query Frame = 1 

Query: 37  SNASPFPSFRYRKNIIGLELRQR--SIAASKST--DGNSIKEENSSSKASSDDAQGPPFL 96
           ++ +PF  FR++K+++ L+LR+R   ++ASKS   D  SI++++ S K S D  QGPPFL
Sbjct: 37  TDQAPF-DFRFKKSVLNLKLRERWQPVSASKSNPRDEESIEDQSGSVK-SGDAPQGPPFL 96

Query: 97  TILAGFFVLSLILWIFSSAVTSLLGLVV 121
           TILAGF VL L+ WI  S +  L+   V
Sbjct: 97  TILAGFLVLFLVFWIIGSILMWLVSFFV 122

[Close]
BLAST of Cucsa.049960 vs. NCBI nr
Match: gi|567892995|ref|XP_006439018.1| (hypothetical protein CICLE_v10033102mg [Citrus clementina])

HSP 1 Score: 66.2 bits (160), Expect = 4.6e-08
Identity = 44/91 (48.35%), Postives = 58/91 (63.74%), Query Frame = 1 

Query: 40  SPFPS-FRYRKN-IIGLELRQR--SIAASKST-DGNSIKEENSSSKASSDDAQGPPFLTI 99
           S  PS FR++ N  + L+ RQR  ++ AS ST  G    +E S +KAS D +QGPPFLTI
Sbjct: 28  SSLPSNFRFKSNSTVRLQARQRFSTVFASNSTPSGGDSLQEKSDTKAS-DASQGPPFLTI 87

Query: 100 LAGFFVLSLILWIFSSAVTSLLGLVVKLISA 126
           LAGF V  L+ WI  S V  L GL+V+L+ +
Sbjct: 88  LAGFVVSVLVCWIVGSIVLWLTGLIVQLLKS 117

[Close]
BLAST of Cucsa.049960 vs. NCBI nr
Match: gi|802795820|ref|XP_012092603.1| (PREDICTED: uncharacterized protein LOC105650332 [Jatropha curcas])

HSP 1 Score: 65.1 bits (157), Expect = 1.0e-07
Identity = 46/130 (35.38%), Postives = 69/130 (53.08%), Query Frame = 1 

Query: 1   MASVFAAPPSQLNLTSRRSSIHRAFLPSYIASIQFHSNASPFPSFRYRKNIIGLELRQRS 60
           MAS+ AA PSQL    R +   +A      ++++  +      S    KN + L+ R+R 
Sbjct: 1   MASLCAARPSQL--VQRFNPTTKAKFTFSSSAVKLTTRVCHASSNSRFKNTVTLQGRERL 60

Query: 61  IAASKSTD----GNSIKEENSSSKASSDDAQGPPFLTILAGFFVLSLILWIFSSAVTSLL 120
           + A  S      G+SIK+  +S + +S+  QGPP LT LAGF V  +I WIF S +  L 
Sbjct: 61  LVAFASNSSPPGGDSIKD--TSDRITSNATQGPPLLTFLAGFLVFCIICWIFGSIIMWLF 120

Query: 121 GLVVKLISAK 127
           GL+V +  +K
Sbjct: 121 GLIVNVPPSK 126

[Close]
BLAST of Cucsa.049960 vs. NCBI nr
Match: gi|694377501|ref|XP_009365051.1| (PREDICTED: uncharacterized protein LOC103954923 [Pyrus x bretschneideri])

HSP 1 Score: 64.7 bits (156), Expect = 1.3e-07
Identity = 33/92 (35.87%), Postives = 54/92 (58.70%), Query Frame = 1 

Query: 39  ASPFPSFRYRKNIIGLELRQRSIAASKST----DGNSIKEENSSSKASSDDAQGPPFLTI 98
           A P   FR  KN++GL++++   A S S     DG+S K+++   + +    QGPP LTI
Sbjct: 46  APPTIHFRLNKNVLGLQIKETRHAVSASNSNPPDGDSTKDKSGGVETNDPAPQGPPLLTI 105

Query: 99  LAGFFVLSLILWIFSSAVTSLLGLVVKLISAK 127
           LAG  VL L+ W+  S +  ++ L+ +L ++K
Sbjct: 106 LAGILVLFLVFWVLGSILMWVISLLFRLPASK 137

The following BLAST results are available for this feature:
BLAST of Cucsa.049960 vs. TrEMBL
Match NameE-valueIdentityDescription
A0A0A0K9W1_CUCSA5.6e-61100.00Uncharacterized protein OS=Cucumis sativus GN=Csa_7G429580 PE=4 SV=1[more]
A0A067DWU9_CITSI3.2e-0848.35Uncharacterized protein OS=Citrus sinensis GN=CISIN_1g033511mg PE=4 SV=1[more]
V4SWI2_9ROSI3.2e-0848.35Uncharacterized protein OS=Citrus clementina GN=CICLE_v10033102mg PE=4 SV=1[more]
M5X7Q1_PRUPE5.1e-0640.26Uncharacterized protein (Fragment) OS=Prunus persica GN=PRUPE_ppa024515mg PE=4 S... [more]
A5AGI7_VITVI8.7e-0634.78Citrate synthase OS=Vitis vinifera GN=VITISV_022331 PE=3 SV=1[more]
BLAST of Cucsa.049960 vs. NCBI nr
Match NameE-valueIdentityDescription
gi|778728761|ref|XP_011659472.1|8.0e-61100.00PREDICTED: uncharacterized protein LOC101220885 [Cucumis sativus][more]
gi|470141540|ref|XP_004306488.1|1.2e-0845.45PREDICTED: uncharacterized protein LOC101307043 [Fragaria vesca subsp. vesca][more]
gi|567892995|ref|XP_006439018.1|4.6e-0848.35hypothetical protein CICLE_v10033102mg [Citrus clementina][more]
gi|802795820|ref|XP_012092603.1|1.0e-0735.38PREDICTED: uncharacterized protein LOC105650332 [Jatropha curcas][more]
gi|694377501|ref|XP_009365051.1|1.3e-0735.87PREDICTED: uncharacterized protein LOC103954923 [Pyrus x bretschneideri][more]
GO Annotation
GO Assignments
This gene is annotated with the following GO terms.
Category Term Accession Term Name
biological_process GO:0008150 biological_process
cellular_component GO:0005575 cellular_component
molecular_function GO:0003674 molecular_function
Relationships

The following mRNA feature(s) are a part of this gene:

Feature NameUnique NameType
Cucsa.049960.1Cucsa.049960.1mRNA


Synteny
The following gene(s) are orthologous to this gene:
GeneOrthologueOrganismBlock
Cucsa.049960Csa7G429580Cucumber (Chinese Long) v2cgycuB031
Cucsa.049960MELO3C023507Melon (DHL92) v3.5.1cgymeB029
Cucsa.049960ClCG09G003740Watermelon (Charleston Gray)cgywcgB033
Cucsa.049960CSPI07G19650Wild cucumber (PI 183967)cgycpiB032
Cucsa.049960CmaCh17G009270Cucurbita maxima (Rimu)cgycmaB0050
Cucsa.049960CmaCh08G005590Cucurbita maxima (Rimu)cgycmaB0052
Cucsa.049960CmoCh17G008980Cucurbita moschata (Rifu)cgycmoB0046
Cucsa.049960CmoCh08G005510Cucurbita moschata (Rifu)cgycmoB0047
Cucsa.049960Lsi02G026210Bottle gourd (USVL1VR-Ls)cgylsiB030
Cucsa.049960Cp4.1LG12g07070Cucurbita pepo (Zucchini)cgycpeB0046
Cucsa.049960CsaV3_7G031470Cucumber (Chinese Long) v3cgycucB033
Cucsa.049960Cla97C09G165990Watermelon (97103) v2cgywmbB030
Cucsa.049960Bhi09G000481Wax gourdcgywgoB034
Cucsa.049960Carg13474Silver-seed gourdcarcgyB0519
Cucsa.049960Carg18707Silver-seed gourdcarcgyB0413
The following gene(s) are paralogous to this gene:

None

The following block(s) are covering this gene:
GeneOrganismBlock
Cucsa.049960Cucumber (Chinese Long) v3cgycucB031
Cucsa.049960Watermelon (97103) v2cgywmbB029
Cucsa.049960Cucumber (Gy14) v1cgycgyB010
Cucsa.049960Cucurbita maxima (Rimu)cgycmaB0051
Cucsa.049960Cucurbita moschata (Rifu)cgycmoB0045
Cucsa.049960Wild cucumber (PI 183967)cgycpiB031
Cucsa.049960Cucumber (Chinese Long) v2cgycuB030
Cucsa.049960Watermelon (97103) v1cgywmB031
Cucsa.049960Watermelon (97103) v1cgywmB033
Cucsa.049960Cucurbita pepo (Zucchini)cgycpeB0047
Cucsa.049960Cucurbita pepo (Zucchini)cgycpeB0048
Cucsa.049960Cucurbita pepo (Zucchini)cgycpeB0049
Cucsa.049960Bottle gourd (USVL1VR-Ls)cgylsiB032
Cucsa.049960Melon (DHL92) v3.6.1cgymedB027
Cucsa.049960Silver-seed gourdcarcgyB0537
Cucsa.049960Silver-seed gourdcarcgyB0593