Carg18707 (gene) Silver-seed gourd | Cucurbit Genomics Database (CuGenDB)

Overview


Name	Carg18707
Type	gene
Organism	Cucurbita argyrosperma (Silver-seed gourd)
Description	CCR4-NOT transcription complex subunit like
Location	Cucurbita_argyrosperma_scaffold_139 : 249330 .. 251862 (-)

Genome Viewer

Gene Expression

Sequences

The following sequences are available for this feature:

Gene sequence (with intron)

Legend: exonfive_prime_UTRpolypeptideCDSthree_prime_UTR

Hold the cursor over a type above to highlight its positions in the sequence below.

GATTAAGCACCATCCATTCTCCGCCCACAGTTTCTTGTGAGCTCGCTTCTCTTCCGAAGTTCCGAAGTCTTTGTAATACGAGTGAAGGTGAATGGCTTCCATTTTCGCTGCGCCGCCGTCTCGACTGAATCTCACTTCTCGCCCAAGTTTGATTCACGGAGCTGTTCTTCCCTCCTCCATCGCCGGCATTCAATATCACTCCAATGCCTTTCCAATTCCTTCTTTCAGGTATCCATCGTTTAACCAGTCCTATTCGATTCCTCGCATTCAATTTAAATGATCTCTCAGGAGATATCGGGATTTCTATATATGCTGGAATGTGACTAGTGAGCTCGTTAGCAATGAAGTTCATCTGATAATTAATTCTGTAAAGTGGATCGGCTTTGATTCTTTTGTTGAAAATGGAATTTCCATTTTAGCAGGTAGTTGCTAATTCCTAATTGCTTTTGGCTGCTAACGCCAAGTGCTTCTACTGGTATTAGGTATTGTTTTTCAGAATTCTTATATTAGAAGTTTACTTGAGCAGTTTTCTTCGATCCCTCGCATTTCAACGTTTAGAATCACATAGGATATACAGATCGTAATGTGTTGAATTGAGCATGTTTGCAGAATCCTATTGCATTTCTGTGTTGAAAATGGAATTGGACGATAGCTGCTGCCTTGCTGATTCTTAATTGGTTTCGGCTACTAAAGCAAACAGCTTATACTAAATCCTGGTTGGTTTTGTTTTGGCAAGTAGCGAAAAAGAGCTTATACTAATATTAGGATTGAGGCTTTATTTTTCTGATCTTGTTCGACATCTAATAGGATGAATCTTTGATTTTCTACCCAATTGGTCCCTGAACGAGCATGTATAGAATTTTGTCCACCAATTTTTTGGTTTCCGGATAAGACTCTTATTAGTTCTTCCTGAAAGCTCTTCTTTGATAGGGAAGTAGTTATAATTAATATGTTCGGGAAATGATTGTCCTGAAATGGCCTATATGGTATCTTGAAAAAGAATTTGGATTTTTTTGGGTTAACCACAGCTGAAGCGAAGGGGCAGGAAATAGCAGACCCAGAATCCGTCAACGGAGCTGCTAGTCCAACTTCTTGTTGCATGCACAAAGCATGCTCTTGTTGATGCACAAAAACTGTTAAAATCTTGAAAGATTAACTAAATCCAATTGTTTCTCAAGTAGTCAAGTAGTTTCAGTCAAGTGAAATGAGTCTGTAACAGCCCAAGCCCACCGCTAGCAGCTACTGTCTGCTTTGGACCGTTGCGTATTGTCGTCAGTCTCACGATTTTTAAAACGCGTTTGTTAGGGAGAGGTTTCCACACTCTTATAAGGAATGTTTCGTTCTCCTCTCCAACCGATGTGGGATCTCACAATCCACCACCTTGGGGGTCTAGCATCCTCGTTGGCATACCGCTCGGTGTCTGGCTTTGATACCATTTGTAACAGCCCAAACCCACCACTAATAGATATTGTCCGTTTTACCTCATTACGTATTACCATCAGCCTCATAATTTTTAGAACGCGTCGGTTAGGGAGAGGTTTCCACACCCTTATAAGGAATGTTTCATTCTTCTCTCCAACGGACGTGGGATCTCACATAATCAAACCCATGAGTGTCTCTAAATTCTTACAAGCCAAGGGGATTCTCTCTTTTCAATGATATGGAGTTTCCTCTTTAAAATCCTCTGGAAGTACTGTAGTGGAAAATACAGGTTCCTATCATTCCTGGTTCCATCTTCATTGTCCTTTGTTCTTCGTTTAGGTTTTCGCTTTTTCGCTTTTTTCTTTTCGCTTGATCTACAAATCTAAATTCTAGACACAGTGAGCCTGAGATGACTGATATTTGTTTTCACAATATTGCTACTCAGATTAGTGCTTGCGTGATTCCTTTTATGCAGGTACAGGAACACCAAAGGATTGGAATTGAGGCAAAGATCTTTTTCTATAACAGCCTCAAATTCCTCAGACCGAAACTCCATCAAGGAGGAAAATGGTTCGAGTAAAGCAAGTAGTGATGCCCAAGGTCCTCCATTCCTTACTATCTTGGCTGGAATTTTTGTCTTTTCCCTCCTACTCTGGATGCTCAGTTCTGCTGCCACTTCACTTATAGGTCTAGTCGTCAAGCTGATCTCAACGAAGTAGTATGCCATTATTGGCATATTTCATGTTGCCTTAGAAGCTTAAAACCGTGTGGTTATATTCCTATCACACAACTCACTTATTAGCTAGTTTTTTTAGCTTACTTCTAATGAATAGTTTTTATTTTCATCTCGTTTATGCCTTGCTTCTGCCTTCAGCTATGTTTAATTGTGAGGAAGGAATTATTCACAGGCAGTGACTCCATAAACTATAATTAAATGGACTTAACTTATTGTGTAGACTAACCCATCTAAAAATGTCCAAGTCAAGCCTCCTTAGGTGACCCGTCTCGGGAATAGAATGTACGAGTCGATAATTTCGTCAAATCTCAAGTATTTTGCTTTCTTATGTACGATTATCAATCGCTTGGAAGTGATTTTGTCAAGTTCAAAATC

mRNA sequence

GATTAAGCACCATCCATTCTCCGCCCACAGTTTCTTGTGAGCTCGCTTCTCTTCCGAAGTTCCGAAGTCTTTGTAATACGAGTGAAGGTGAATGGCTTCCATTTTCGCTGCGCCGCCGTCTCGACTGAATCTCACTTCTCGCCCAAGTTTGATTCACGGAGCTGTTCTTCCCTCCTCCATCGCCGGCATTCAATATCACTCCAATGCCTTTCCAATTCCTTCTTTCAGGTACAGGAACACCAAAGGATTGGAATTGAGGCAAAGATCTTTTTCTATAACAGCCTCAAATTCCTCAGACCGAAACTCCATCAAGGAGGAAAATGGTTCGAGTAAAGCAAGTAGTGATGCCCAAGGTCCTCCATTCCTTACTATCTTGGCTGGAATTTTTGTCTTTTCCCTCCTACTCTGGATGCTCAGTTCTGCTGCCACTTCACTTATAGGTCTAGTCGTCAAGCTGATCTCAACGAAGTAGTATGCCATTATTGGCATATTTCATGTTGCCTTAGAAGCTTAAAACCGTGTGGTTATATTCCTATCACACAACTCACTTATTAGCTAGTTTTTTTAGCTTACTTCTAATGAATAGTTTTTATTTTCATCTCGTTTATGCCTTGCTTCTGCCTTCAGCTATGTTTAATTGTGAGGAAGGAATTATTCACAGGCAGTGACTCCATAAACTATAATTAAATGGACTTAACTTATTGTGTAGACTAACCCATCTAAAAATGTCCAAGTCAAGCCTCCTTAGGTGACCCGTCTCGGGAATAGAATGTACGAGTCGATAATTTCGTCAAATCTCAAGTATTTTGCTTTCTTATGTACGATTATCAATCGCTTGGAAGTGATTTTGTCAAGTTCAAAATC

Coding sequence (CDS)

ATGGCTTCCATTTTCGCTGCGCCGCCGTCTCGACTGAATCTCACTTCTCGCCCAAGTTTGATTCACGGAGCTGTTCTTCCCTCCTCCATCGCCGGCATTCAATATCACTCCAATGCCTTTCCAATTCCTTCTTTCAGGTACAGGAACACCAAAGGATTGGAATTGAGGCAAAGATCTTTTTCTATAACAGCCTCAAATTCCTCAGACCGAAACTCCATCAAGGAGGAAAATGGTTCGAGTAAAGCAAGTAGTGATGCCCAAGGTCCTCCATTCCTTACTATCTTGGCTGGAATTTTTGTCTTTTCCCTCCTACTCTGGATGCTCAGTTCTGCTGCCACTTCACTTATAGGTCTAGTCGTCAAGCTGATCTCAACGAAGTAG

Protein sequence

MASIFAAPPSRLNLTSRPSLIHGAVLPSSIAGIQYHSNAFPIPSFRYRNTKGLELRQRSFSITASNSSDRNSIKEENGSSKASSDAQGPPFLTILAGIFVFSLLLWMLSSAATSLIGLVVKLISTK

Homology

[Close]

BLAST of Carg18707 vs. NCBI nr
Match: XP_022953425.1 (uncharacterized protein LOC111455984 [Cucurbita moschata])

HSP 1 Score: 228.8 bits (582), Expect = 1.0e-56
Identity = 124/126 (98.41%), Postives = 125/126 (99.21%), Query Frame = 0


Query: 1   MASIFAAPPSRLNLTSRPSLIHGAVLPSSIAGIQYHSNAFPIPSFRYRNTKGLELRQRSF 60
           MASIF+APPSRLNLTSRPSLIHGAVLPSSIAGIQYHSNAFPIPSFRYRNTKGLELRQRSF
Sbjct: 1   MASIFSAPPSRLNLTSRPSLIHGAVLPSSIAGIQYHSNAFPIPSFRYRNTKGLELRQRSF 60

Query: 61  SITASNSSDRNSIKEENGSSKASSDAQGPPFLTILAGIFVFSLLLWMLSSAATSLIGLVV 120
           SITASNSSD NSIKEENGSSKASSDAQGPPFLTILAGIFVFSLLLWMLSSAATSLIGLVV
Sbjct: 61  SITASNSSDGNSIKEENGSSKASSDAQGPPFLTILAGIFVFSLLLWMLSSAATSLIGLVV 120

Query: 121 KLISTK 127
           KLISTK
Sbjct: 121 KLISTK 126

[Close]

BLAST of Carg18707 vs. NCBI nr
Match: XP_023547947.1 (uncharacterized protein LOC111806743 [Cucurbita pepo subsp. pepo])

HSP 1 Score: 226.5 bits (576), Expect = 5.1e-56
Identity = 123/126 (97.62%), Postives = 123/126 (97.62%), Query Frame = 0


Query: 1   MASIFAAPPSRLNLTSRPSLIHGAVLPSSIAGIQYHSNAFPIPSFRYRNTKGLELRQRSF 60
           MASIFAAPPSRLNLTSRPSLIHGAVLPSS AGIQYHSNAFPIPSF YRNTKGLELRQRSF
Sbjct: 1   MASIFAAPPSRLNLTSRPSLIHGAVLPSSTAGIQYHSNAFPIPSFSYRNTKGLELRQRSF 60

Query: 61  SITASNSSDRNSIKEENGSSKASSDAQGPPFLTILAGIFVFSLLLWMLSSAATSLIGLVV 120
           SITASNSSDRNSIKEENGSSKAS DAQGPPFLTILAGIFVFSLLLWMLSSAATSLIGLVV
Sbjct: 61  SITASNSSDRNSIKEENGSSKASRDAQGPPFLTILAGIFVFSLLLWMLSSAATSLIGLVV 120

Query: 121 KLISTK 127
           KLISTK
Sbjct: 121 KLISTK 126

[Close]

BLAST of Carg18707 vs. NCBI nr
Match: XP_022991945.1 (uncharacterized protein LOC111488436 [Cucurbita maxima])

HSP 1 Score: 221.9 bits (564), Expect = 1.3e-54
Identity = 121/125 (96.80%), Postives = 122/125 (97.60%), Query Frame = 0


Query: 1   MASIFAAPPSRLNLTSRPSLIHGAVLPSSIAGIQYHSNAFPIPSFRYRNTKGLELRQRSF 60
           MASIFAAPPSRLNLTSRPSLIHGAVLPSSIAGIQYHSNAFPIPSFRYRNTKGLEL  RSF
Sbjct: 1   MASIFAAPPSRLNLTSRPSLIHGAVLPSSIAGIQYHSNAFPIPSFRYRNTKGLELSPRSF 60

Query: 61  SITASNSSDRNSIKEENGSSKASSDAQGPPFLTILAGIFVFSLLLWMLSSAATSLIGLVV 120
           SITASNSSD NSI+EENGSSKASSDAQGPPFLTILAGIFVFSLLLWMLSSAATSLIGLVV
Sbjct: 61  SITASNSSDGNSIEEENGSSKASSDAQGPPFLTILAGIFVFSLLLWMLSSAATSLIGLVV 120

Query: 121 KLIST 126
           KLIST
Sbjct: 121 KLIST 125

[Close]

BLAST of Carg18707 vs. NCBI nr
Match: XP_023004845.1 (uncharacterized protein LOC111498025 [Cucurbita maxima])

HSP 1 Score: 171.4 bits (433), Expect = 2.0e-39
Identity = 95/127 (74.80%), Postives = 109/127 (85.83%), Query Frame = 0


Query: 1   MASIFAAPPSRLNLTS-RPSLIHGAVLPSSIAGIQYHSNAFPIPSFRYRNTKGLELRQRS 60
           MAS+FAAPPS+L L+S RPSL H A LP SI G+++H N FPIPSFRY+NTKGL+LRQRS
Sbjct: 1   MASVFAAPPSQLVLSSHRPSLDHKAFLP-SIVGVKFHRNGFPIPSFRYKNTKGLKLRQRS 60

Query: 61  FSITASNSSDRNSIKEENGSSKASSDAQGPPFLTILAGIFVFSLLLWMLSSAATSLIGLV 120
           FSITASNSSD NS KEEN  SK + DAQGPPFLTILAG FVFSL+LW++SS+ T+LI LV
Sbjct: 61  FSITASNSSDGNSTKEENDGSKVTGDAQGPPFLTILAGFFVFSLVLWIVSSSVTTLIALV 120

Query: 121 VKLISTK 127
           VKLISTK
Sbjct: 121 VKLISTK 126

[Close]

BLAST of Carg18707 vs. NCBI nr
Match: XP_022959607.1 (uncharacterized protein LOC111460632 [Cucurbita moschata])

HSP 1 Score: 168.3 bits (425), Expect = 1.7e-38
Identity = 93/127 (73.23%), Postives = 108/127 (85.04%), Query Frame = 0


Query: 1   MASIFAAPPSRLNLTS-RPSLIHGAVLPSSIAGIQYHSNAFPIPSFRYRNTKGLELRQRS 60
           MAS+FAAPPS+L L+S RPSL H A LP SI G+++H N FPIPSFRY+NTKGL+LRQRS
Sbjct: 1   MASVFAAPPSQLVLSSHRPSLDHKAFLP-SIVGVKFHRNGFPIPSFRYKNTKGLKLRQRS 60

Query: 61  FSITASNSSDRNSIKEENGSSKASSDAQGPPFLTILAGIFVFSLLLWMLSSAATSLIGLV 120
           FSITASNSSD NS KE+N  SK + DAQGPPFLTILAG FVFSL+LW++SS+ T+LI L 
Sbjct: 61  FSITASNSSDGNSTKEKNDGSKVTGDAQGPPFLTILAGFFVFSLVLWIVSSSVTTLIALA 120

Query: 121 VKLISTK 127
           VKLISTK
Sbjct: 121 VKLISTK 126

[Close]

BLAST of Carg18707 vs. TrEMBL
Match: tr|A0A0A0K9W1|A0A0A0K9W1_CUCSA (Uncharacterized protein OS=Cucumis sativus OX=3659 GN=Csa_7G429580 PE=4 SV=1)

HSP 1 Score: 163.3 bits (412), Expect = 3.5e-37
Identity = 98/128 (76.56%), Postives = 105/128 (82.03%), Query Frame = 0


Query: 1   MASIFAAPPSRLNLTSRPSLIHGAVLPSSIAGIQYHSNAFPIPSFRYR-NTKGLELRQRS 60
           MAS+FAAPPS+LNLTSR S IH A LPS IA IQ+HSNA P PSFRYR N  GLELRQR 
Sbjct: 1   MASVFAAPPSQLNLTSRRSSIHRAFLPSYIASIQFHSNASPFPSFRYRKNIIGLELRQR- 60

Query: 61  FSITASNSSDRNSIKEENGSSKASS-DAQGPPFLTILAGIFVFSLLLWMLSSAATSLIGL 120
            SI AS S+D NSIKEEN SSKASS DAQGPPFLTILAG FV SL+LW+ SSA TSL+GL
Sbjct: 61  -SIAASKSTDGNSIKEENSSSKASSDDAQGPPFLTILAGFFVLSLILWIFSSAVTSLLGL 120

Query: 121 VVKLISTK 127
           VVKLIS K
Sbjct: 121 VVKLISAK 126

[Close]

BLAST of Carg18707 vs. TrEMBL
Match: tr|A0A2K2C2A2|A0A2K2C2A2_POPTR (Uncharacterized protein OS=Populus trichocarpa OX=3694 GN=POPTR_001G230200v3 PE=4 SV=1)

HSP 1 Score: 73.2 bits (178), Expect = 4.8e-10
Identity = 53/120 (44.17%), Postives = 70/120 (58.33%), Query Frame = 0


Query: 16  SRPSLIHGAVLPSSIA------GIQYHSNAFPIP-SFRYRNTKGLELRQRSFSITASNS- 75
           S P LIHG   P+S +       I+  SN    P SFR+RN   L+LR R +++ ASNS 
Sbjct: 6   SSPKLIHGFHGPNSCSCIPHFHSIKLGSNRSQTPLSFRFRNAARLQLRTRLYTVFASNSS 65

Query: 76  -SDRNSIKEENGSSKASSDAQGPPFLTILAGIFVFSLLLWMLSSAATSLIGLVVKLISTK 127
            SD +S +E++G + +S DAQGPPFLTILAG  VFSLL W+            VK+  +K
Sbjct: 66  PSDGDSSEEKSGGTISSDDAQGPPFLTILAGFLVFSLLCWVFGXXXXXXXXXXVKVPLSK 125

[Close]

BLAST of Carg18707 vs. TrEMBL
Match: tr|A0A2R6RAC6|A0A2R6RAC6_ACTCH (CCR4-NOT transcription complex subunit like OS=Actinidia chinensis var. chinensis OX=1590841 GN=CEY00_Acc09346 PE=4 SV=1)

HSP 1 Score: 65.9 bits (159), Expect = 7.6e-08
Identity = 40/103 (38.83%), Postives = 65/103 (63.11%), Query Frame = 0


Query: 27  PSSIAGIQYHSNA-FPIPSFRYRNTKGLELRQRSFSI--TASNSSDRNSIKEENGSSKAS 86
           PS+   + + +N  F   +FR++N   L+L + SF++  ++SN SD+N +KE++   K  
Sbjct: 24  PSATTALAFGANVPFTPLNFRFKNAVTLQLSRSSFAVFASSSNPSDQNPLKEKSDEIKTG 83

Query: 87  SDAQGPPFLTILAGIFVFSLLLWMLSSAATSLIGLVVKLISTK 127
             +QGPPFLTILAG+ VF ++ W++ S  + LIGL+     TK
Sbjct: 84  DASQGPPFLTILAGLLVFLVVCWIIGSILSWLIGLIFHSPPTK 126

[Close]

BLAST of Carg18707 vs. TrEMBL
Match: tr|A0A1Q3CBZ0|A0A1Q3CBZ0_CEPFO (Uncharacterized protein OS=Cephalotus follicularis OX=3775 GN=CFOL_v3_21082 PE=4 SV=1)

HSP 1 Score: 65.5 bits (158), Expect = 1.0e-07
Identity = 56/130 (43.08%), Postives = 72/130 (55.38%), Query Frame = 0


Query: 1   MASIFAAPPSRLNL-TSRPSLIHGAVLPSSIAGIQYHSNAFPIP-SFRYRNTKGLELRQR 60
           M S+ AA PS+  L   RPS I       +I+ +       P P + R RN    ++RQ 
Sbjct: 1   MRSLCAAAPSQGVLGFHRPSQI------PTISVLMLTPRVPPTPFNIRLRNAIKPQVRQL 60

Query: 61  SFSITASNS--SDRNSIKEENGSSKASSDAQGPPFLTILAGIFVFSLLLWMLSSAATSLI 120
             +  ASNS  S R+S+KEE    K S  AQGPPFLTILAG+ VFSL+ W+  S    LI
Sbjct: 61  LITAFASNSNPSGRDSLKEEFDGIKTSDTAQGPPFLTILAGLLVFSLVCWIAGSVTVWLI 120

Query: 121 GLVVKLISTK 127
           GL+V+L   K
Sbjct: 121 GLIVRLSQFK 124

[Close]

BLAST of Carg18707 vs. TrEMBL
Match: tr|A0A251Q8R7|A0A251Q8R7_PRUPE (Uncharacterized protein OS=Prunus persica OX=3760 GN=PRUPE_2G003000 PE=4 SV=1)

HSP 1 Score: 58.9 bits (141), Expect = 9.3e-06
Identity = 48/124 (38.71%), Postives = 71/124 (57.26%), Query Frame = 0


Query: 1   MASIFAAPPSRL-NLTSRPSLIHGAVLPSSIAGIQYHSNAFPIPSFRYRNTKGLELRQRS 60
           MAS+ AA  +RL +   RP  I    +P + +  +    A P      RN   L++R+  
Sbjct: 3   MASVLAAAQARLSSQLLRP--IPQNQIPITHSLKRSAVKAAPFDFSLERNVLRLKIRESW 62

Query: 61  FSITASNS--SDRNSIKEENGSSKASSDAQGPPFLTILAGIFVFSLLLWMLSSAATSLIG 120
            +++ASNS  S  +S+++++G  K +  AQGPP LTI+AG  VF LL W+L S    LIG
Sbjct: 63  HAVSASNSNPSSGDSVEDKSGGVKTNDAAQGPPLLTIVAGFVVFFLLFWILGSTLMWLIG 122

Query: 121 LVVK 122
           LVV+
Sbjct: 123 LVVR 124

The following BLAST results are available for this feature:

BLAST of Carg18707 vs. NCBI nr


Match Name	E-value	Identity	Description
XP_022953425.1	1.0e-56	98.41	uncharacterized protein LOC111455984 [Cucurbita moschata]	[more]
XP_023547947.1	5.1e-56	97.62	uncharacterized protein LOC111806743 [Cucurbita pepo subsp. pepo]	[more]
XP_022991945.1	1.3e-54	96.80	uncharacterized protein LOC111488436 [Cucurbita maxima]	[more]
XP_023004845.1	2.0e-39	74.80	uncharacterized protein LOC111498025 [Cucurbita maxima]	[more]
XP_022959607.1	1.7e-38	73.23	uncharacterized protein LOC111460632 [Cucurbita moschata]	[more]

BLAST of Carg18707 vs. TAIR10


Match Name	E-value	Identity	Description

BLAST of Carg18707 vs. Swiss-Prot


Match Name	E-value	Identity	Description

BLAST of Carg18707 vs. TrEMBL


Match Name	E-value	Identity	Description
tr\|A0A0A0K9W1\|A0A0A0K9W1_CUCSA	3.5e-37	76.56	Uncharacterized protein OS=Cucumis sativus OX=3659 GN=Csa_7G429580 PE=4 SV=1	[more]
tr\|A0A2K2C2A2\|A0A2K2C2A2_POPTR	4.8e-10	44.17	Uncharacterized protein OS=Populus trichocarpa OX=3694 GN=POPTR_001G230200v3 PE=...	[more]
tr\|A0A2R6RAC6\|A0A2R6RAC6_ACTCH	7.6e-08	38.83	CCR4-NOT transcription complex subunit like OS=Actinidia chinensis var. chinensi...	[more]
tr\|A0A1Q3CBZ0\|A0A1Q3CBZ0_CEPFO	1.0e-07	43.08	Uncharacterized protein OS=Cephalotus follicularis OX=3775 GN=CFOL_v3_21082 PE=4...	[more]
tr\|A0A251Q8R7\|A0A251Q8R7_PRUPE	9.3e-06	38.71	Uncharacterized protein OS=Prunus persica OX=3760 GN=PRUPE_2G003000 PE=4 SV=1	[more]

GO Annotation

GO Assignments

This gene is annotated with the following GO terms.

Category	Term Accession	Term Name
biological_process	GO:0008150	biological_process
cellular_component	GO:0005575	cellular_component
molecular_function	GO:0003674	molecular_function

Relationships

The following mRNA feature(s) are a part of this gene:


Feature Name	Unique Name	Type
Carg18707-RA	Carg18707-RA	mRNA

InterPro

Analysis Name: InterPro Annotations of silver-seed gourd
Date Performed: 2019-03-07


IPR Term	IPR Description	Source	Source Term	Source Description	Alignment
None	No IPR available	MOBIDB_LITE	mobidb-lite	disorder_prediction	coord: 63..87

Synteny

The following gene(s) are orthologous to this gene:


Gene	Orthologue	Organism	Block
Carg18707	Csa7G429580	Cucumber (Chinese Long) v2	carcuB0387
Carg18707	MELO3C023507	Melon (DHL92) v3.5.1	carmeB0359
Carg18707	ClCG09G003740	Watermelon (Charleston Gray)	carwcgB0346
Carg18707	CSPI07G19650	Wild cucumber (PI 183967)	carcpiB0391
Carg18707	Cucsa.049960	Cucumber (Gy14) v1	carcgyB0413
Carg18707	CmaCh08G005590	Cucurbita maxima (Rimu)	carcmaB0499
Carg18707	CmaCh17G009270	Cucurbita maxima (Rimu)	carcmaB0497
Carg18707	CmoCh17G008980	Cucurbita moschata (Rifu)	carcmoB0480
Carg18707	CmoCh08G005510	Cucurbita moschata (Rifu)	carcmoB0482
Carg18707	Lsi02G026210	Bottle gourd (USVL1VR-Ls)	carlsiB321
Carg18707	Cp4.1LG17g08470	Cucurbita pepo (Zucchini)	carcpeB0494
Carg18707	Cp4.1LG12g07070	Cucurbita pepo (Zucchini)	carcpeB0493
Carg18707	CsGy7G017970	Cucumber (Gy14) v2	carcgybB0366
Carg18707	CsaV3_7G031470	Cucumber (Chinese Long) v3	carcucB0390
Carg18707	Cla97C09G165990	Watermelon (97103) v2	carwmbB0371
Carg18707	Bhi09G000481	Wax gourd	carwgoB0439

The following gene(s) are paralogous to this gene:


Gene	Paralogue	Organism	Block
Carg18707	Carg13474	Silver-seed gourd	carcarB379

The following block(s) are covering this gene:


Gene	Organism	Block
Carg18707	Silver-seed gourd	carcarB381
Carg18707	Silver-seed gourd	carcarB382
Carg18707	Silver-seed gourd	carcarB383
Carg18707	Cucumber (Gy14) v2	carcgybB0365
Carg18707	Cucurbita maxima (Rimu)	carcmaB0496
Carg18707	Cucurbita maxima (Rimu)	carcmaB0498
Carg18707	Cucurbita moschata (Rifu)	carcmoB0479
Carg18707	Cucurbita moschata (Rifu)	carcmoB0481
Carg18707	Cucurbita pepo (Zucchini)	carcpeB0495
Carg18707	Wild cucumber (PI 183967)	carcpiB0390
Carg18707	Cucumber (Chinese Long) v2	carcuB0386
Carg18707	Cucumber (Chinese Long) v3	carcucB0389
Carg18707	Bottle gourd (USVL1VR-Ls)	carlsiB322
Carg18707	Melon (DHL92) v3.5.1	carmeB0360
Carg18707	Melon (DHL92) v3.6.1	carmedB0364
Carg18707	Melon (DHL92) v3.6.1	carmedB0365
Carg18707	Watermelon (Charleston Gray)	carwcgB0347
Carg18707	Watermelon (97103) v1	carwmB0345
Carg18707	Watermelon (97103) v1	carwmB0346
Carg18707	Watermelon (97103) v2	carwmbB0369
Carg18707	Wax gourd	carwgoB0437