CSPI07G19650 (gene) Wild cucumber (PI 183967)

Overview
NameCSPI07G19650
Typegene
OrganismCucumis sativus (Wild cucumber (PI 183967))
DescriptionUnknown protein
LocationChr7 : 17235837 .. 17238004 (-)
Genome Viewer
Sequences
The following sequences are available for this feature:

Gene sequence (with intron)

Legend: five_prime_UTRCDSthree_prime_UTR
Hold the cursor over a type above to highlight its positions in the sequence below.
AAATATTGGTATGATAAGAAAATGATACGTAGATTACGAACGGAAGAAGCACCAACCACTCGCTCTTTGTGTCCGGAGGCTCCAAAGTCTTTGTATTACGACTAAGTCACTGACGCTGAAGAATGGCTTCCGTCTTCGCTGCGCCGCCGTCTCAACTGAATCTCACATCCCGCCGGAGTTCGATTCACCGAGCCTTTCTTCCTTCTTACATTGCCAGCATTCAATTTCACTCGAACGCCTCTCCATTTCCTTCTTTCAGGTATCCTTCGTGTAATCACTCTTCTTCGATTCCTCGTATTCAACATTTTAAATCTCTTAGAAAATTTCGGGATTTTTATATGCTGTAATGAGACTAATGAGCATGCTTGCGATGAAGTTCATCTGTTACTTAGTCCTGTAAAGTGGATCGACTGTTTATTTTTGTTGAAAATGGAATGCAGCTGGTAGTTGCTAATTCCTAATTGCTTTTGGCTTCTAACGCAAAGTGCTTCACTAGTATTTGGTTTTATTTTTCTGAGTTTATATTTGACATACCTTTGATTTGATTACTACTTAAGCAGTTTTCTTCGATCTCGGTATTCAACATCTATAATCTCAGGGATATCCGGATTTTTATGTGTTGAATGGAGCATGTTAGCATTAAAGTGAATCCTCCTTGATTTGTGAGTTGAAAGTGGAATTGAACGATTGTCGCTGGCTTGCTGGTTCCTAGTTGGTTTCAGCTACTGACGCAAACAGCTTATTAACGTTCTGAATGTTTTATAGTTTAAATGTTGTGAACCTTTGATTTGATACCTATTTTAGCAGTCCTTTTCGACAAATTGCTTCTGGCTGGCATGTACAGTTTCAAAGGATATCTGAAGTTATTATTTGGTGTTGCACTGTTGTGAGCATTTTAGCATTCAAGTTCGTCTATAACTTTGTTATGTAAAGGTAATCCATTTTGATTCTTGTGCTGAAAATTGAATTTGAAGGTAGTTACTAAACCCTAAGCCCCAATTAAACACGCACAGCCCTCGGGCCAAACAAGGAAGCTCACTCCACTCCACCTAAACCCTCAGCCCAAACAGGCCCAAAGCTTAAATAGTGTTAGGATTGAGACTTCCTGATCTTGTTCGACGTCTACATGGGATGGATCTTTGATTTGATACTTATTTGGTCATTACATGAGCATGAATAGAACTTTGTCCATTATTTTTTGGTTTCTGGTGCAAATAGGGAAAGTCTTATTTGTTCGTTCTGAAGGCTCTTCTCTAATAGTGAAGCAGTTCTACTGTAGATTTCCGGGAAATAATAATTCTACAATGGCCTATATGGTTTCTTGAAAATAGAATTAAAACCTATTATCTTCTCAAATTGTCAGTTGACTCATCTGTGCATTCTCTGCCAAGTTACTCTTTAGATTAATCTTGTGGAGTATTGGGGTGGAAAATAAAATTTCCCATCATTCTTGGTTCCATCTTTTAGGATCTTTATTGGCCTTTGTCTGTTTAGCTTTTCGCTTTTTGGTTTCTTTTCATATCATTTATTACTGGTAATTATTTACTCAGAAAGATATATATGGCAGGCTTGTATAAGGGCCAAACCAGTATCTGAAATTCTCTTTTCACATGCTAAGCAGATTTACTGGAAACTATAATACATTTTAAGAATTAAGAGTATGAAATGACTGATATTTGTATTCGCAATATTTACTTAGACGAGTGCTTATGTGATTTCTTTTATACAGGTACAGGAAGAACATCATTGGATTAGAATTAAGGCAAAGATCTATAGCTGCCTCAAAATCCACAGATGGGAATTCCATCAAGGAGGAAAATAGTTCGAGTAAAGCAAGTAGTGATGATGCCCAAGGTCCTCCATTTCTTACCATTTTAGCTGGATTTTTTGTCTTATCCCTTATACTATGGATATTCAGTTCTGCTGTTACGTCACTTTTAGGTCTAGTCGTCAAGCTGATCTCAGCAAAATAATGTCGCATAATTGGAATAGTTTCATGTTTCTAAGCATAAATCTGTATGGTTATATTTGTAGCAAAACTTACTTTTTAGCCAGTTTTAGCTTTATTTGTAGTGAATAGATTTTGTTTTCATCTTATTTATGCCCTACCTTCAGCTGTCTTCAGGCAATTGAGTTGGTAAATAAATAATTGTGTAGATTAACCCATC

mRNA sequence

ATGGCTTCCGTCTTCGCTGCGCCGCCGTCTCAACTGAATCTCACATCCCGCCGGAGTTCGATTCACCGAGCCTTTCTTCCTTCTTACATTGCCAGCATTCAATTTCACTCGAACGCCTCTCCATTTCCTTCTTTCAGGTACAGGAAGAACATCATTGGATTAGAATTAAGGCAAAGATCTATAGCTGCCTCAAAATCCACAGATGGGAATTCCATCAAGGAGGAAAATAGTTCGAGTAAAGCAAGTAGTGATGATGCCCAAGGTCCTCCATTTCTTACCATTTTAGCTGGATTTTTTGTCTTATCCCTTATACTATGGATATTCAGTTCTGCTGTTACGTCACTTTTAGGTCTAGTCGTCAAGCTGATCTCAGCAAAATAA

Coding sequence (CDS)

ATGGCTTCCGTCTTCGCTGCGCCGCCGTCTCAACTGAATCTCACATCCCGCCGGAGTTCGATTCACCGAGCCTTTCTTCCTTCTTACATTGCCAGCATTCAATTTCACTCGAACGCCTCTCCATTTCCTTCTTTCAGGTACAGGAAGAACATCATTGGATTAGAATTAAGGCAAAGATCTATAGCTGCCTCAAAATCCACAGATGGGAATTCCATCAAGGAGGAAAATAGTTCGAGTAAAGCAAGTAGTGATGATGCCCAAGGTCCTCCATTTCTTACCATTTTAGCTGGATTTTTTGTCTTATCCCTTATACTATGGATATTCAGTTCTGCTGTTACGTCACTTTTAGGTCTAGTCGTCAAGCTGATCTCAGCAAAATAA
Homology
[Close]
BLAST of CSPI07G19650 vs. TrEMBL
Match: A0A0A0K9W1_CUCSA (Uncharacterized protein OS=Cucumis sativus GN=Csa_7G429580 PE=4 SV=1)

HSP 1 Score: 231.5 bits (589), Expect = 5.7e-58
Identity = 126/126 (100.00%), Postives = 126/126 (100.00%), Query Frame = 1 

Query: 1   MASVFAAPPSQLNLTSRRSSIHRAFLPSYIASIQFHSNASPFPSFRYRKNIIGLELRQRS 60
           MASVFAAPPSQLNLTSRRSSIHRAFLPSYIASIQFHSNASPFPSFRYRKNIIGLELRQRS
Sbjct: 1   MASVFAAPPSQLNLTSRRSSIHRAFLPSYIASIQFHSNASPFPSFRYRKNIIGLELRQRS 60

Query: 61  IAASKSTDGNSIKEENSSSKASSDDAQGPPFLTILAGFFVLSLILWIFSSAVTSLLGLVV 120
           IAASKSTDGNSIKEENSSSKASSDDAQGPPFLTILAGFFVLSLILWIFSSAVTSLLGLVV
Sbjct: 61  IAASKSTDGNSIKEENSSSKASSDDAQGPPFLTILAGFFVLSLILWIFSSAVTSLLGLVV 120

Query: 121 KLISAK 127
           KLISAK
Sbjct: 121 KLISAK 126

[Close]
BLAST of CSPI07G19650 vs. NCBI nr
Match: gi|778728761|ref|XP_011659472.1| (PREDICTED: uncharacterized protein LOC101220885 [Cucumis sativus])

HSP 1 Score: 231.5 bits (589), Expect = 8.2e-58
Identity = 126/126 (100.00%), Postives = 126/126 (100.00%), Query Frame = 1 

Query: 1   MASVFAAPPSQLNLTSRRSSIHRAFLPSYIASIQFHSNASPFPSFRYRKNIIGLELRQRS 60
           MASVFAAPPSQLNLTSRRSSIHRAFLPSYIASIQFHSNASPFPSFRYRKNIIGLELRQRS
Sbjct: 1   MASVFAAPPSQLNLTSRRSSIHRAFLPSYIASIQFHSNASPFPSFRYRKNIIGLELRQRS 60

Query: 61  IAASKSTDGNSIKEENSSSKASSDDAQGPPFLTILAGFFVLSLILWIFSSAVTSLLGLVV 120
           IAASKSTDGNSIKEENSSSKASSDDAQGPPFLTILAGFFVLSLILWIFSSAVTSLLGLVV
Sbjct: 61  IAASKSTDGNSIKEENSSSKASSDDAQGPPFLTILAGFFVLSLILWIFSSAVTSLLGLVV 120

Query: 121 KLISAK 127
           KLISAK
Sbjct: 121 KLISAK 126

[Close]
BLAST of CSPI07G19650 vs. NCBI nr
Match: gi|470141540|ref|XP_004306488.1| (PREDICTED: uncharacterized protein LOC101307043 [Fragaria vesca subsp. vesca])

HSP 1 Score: 59.7 bits (143), Expect = 4.3e-06
Identity = 40/88 (45.45%), Postives = 59/88 (67.05%), Query Frame = 1 

Query: 37  SNASPFPSFRYRKNIIGLELRQR--SIAASKST--DGNSIKEENSSSKASSDDAQGPPFL 96
           ++ +PF  FR++K+++ L+LR+R   ++ASKS   D  SI++++ S K S D  QGPPFL
Sbjct: 37  TDQAPF-DFRFKKSVLNLKLRERWQPVSASKSNPRDEESIEDQSGSVK-SGDAPQGPPFL 96

Query: 97  TILAGFFVLSLILWIFSSAVTSLLGLVV 121
           TILAGF VL L+ WI  S +  L+   V
Sbjct: 97  TILAGFLVLFLVFWIIGSILMWLVSFFV 122

The following BLAST results are available for this feature:
BLAST of CSPI07G19650 vs. Swiss-Prot
Match NameE-valueIdentityDescription
BLAST of CSPI07G19650 vs. TrEMBL
Match NameE-valueIdentityDescription
A0A0A0K9W1_CUCSA5.7e-58100.00Uncharacterized protein OS=Cucumis sativus GN=Csa_7G429580 PE=4 SV=1[more]
BLAST of CSPI07G19650 vs. TAIR10
Match NameE-valueIdentityDescription
BLAST of CSPI07G19650 vs. NCBI nr
Match NameE-valueIdentityDescription
gi|778728761|ref|XP_011659472.1|8.2e-58100.00PREDICTED: uncharacterized protein LOC101220885 [Cucumis sativus][more]
gi|470141540|ref|XP_004306488.1|4.3e-0645.45PREDICTED: uncharacterized protein LOC101307043 [Fragaria vesca subsp. vesca][more]
GO Annotation
GO Assignments
This gene is annotated with the following GO terms.
Category Term Accession Term Name
biological_process GO:0008150 biological_process
cellular_component GO:0005575 cellular_component
cellular_component GO:0016021 integral component of membrane
molecular_function GO:0003674 molecular_function
Relationships

The following mRNA feature(s) are a part of this gene:

Feature NameUnique NameType
CSPI07G19650.1CSPI07G19650.1mRNA


Synteny
The following gene(s) are orthologous to this gene:
GeneOrthologueOrganismBlock
CSPI07G19650Csa7G429580Cucumber (Chinese Long) v2cpicuB354
CSPI07G19650MELO3C023507Melon (DHL92) v3.5.1cpimeB525
CSPI07G19650ClCG09G003740Watermelon (Charleston Gray)cpiwcgB553
CSPI07G19650Lsi02G026210Bottle gourd (USVL1VR-Ls)cpilsiB517
CSPI07G19650CsaV3_7G031470Cucumber (Chinese Long) v3cpicucB414
CSPI07G19650Cla97C09G165990Watermelon (97103) v2cpiwmbB596
CSPI07G19650Bhi09G000481Wax gourdcpiwgoB716
CSPI07G19650Cucsa.049960Cucumber (Gy14) v1cgycpiB032
CSPI07G19650CmaCh17G009270Cucurbita maxima (Rimu)cmacpiB392
CSPI07G19650CmaCh08G005590Cucurbita maxima (Rimu)cmacpiB934
CSPI07G19650CmoCh17G008980Cucurbita moschata (Rifu)cmocpiB381
CSPI07G19650CmoCh08G005510Cucurbita moschata (Rifu)cmocpiB913
CSPI07G19650Cp4.1LG12g07070Cucurbita pepo (Zucchini)cpecpiB163
CSPI07G19650CsGy7G017970Cucumber (Gy14) v2cgybcpiB331
CSPI07G19650Carg13474Silver-seed gourdcarcpiB0489
CSPI07G19650Carg18707Silver-seed gourdcarcpiB0391
The following gene(s) are paralogous to this gene:

None

The following block(s) are covering this gene:
GeneOrganismBlock
CSPI07G19650Wild cucumber (PI 183967)cpicpiB054
CSPI07G19650Wild cucumber (PI 183967)cpicpiB142
CSPI07G19650Cucumber (Gy14) v1cgycpiB211
CSPI07G19650Cucurbita maxima (Rimu)cmacpiB081
CSPI07G19650Cucurbita maxima (Rimu)cmacpiB581
CSPI07G19650Cucurbita maxima (Rimu)cmacpiB652
CSPI07G19650Cucurbita moschata (Rifu)cmocpiB075
CSPI07G19650Cucurbita moschata (Rifu)cmocpiB569
CSPI07G19650Cucurbita moschata (Rifu)cmocpiB645
CSPI07G19650Cucumber (Chinese Long) v2cpicuB338
CSPI07G19650Watermelon (Charleston Gray)cpiwcgB560
CSPI07G19650Watermelon (Charleston Gray)cpiwcgB572
CSPI07G19650Watermelon (97103) v1cpiwmB585
CSPI07G19650Watermelon (97103) v1cpiwmB619
CSPI07G19650Cucurbita pepo (Zucchini)cpecpiB302
CSPI07G19650Cucurbita pepo (Zucchini)cpecpiB344
CSPI07G19650Cucurbita pepo (Zucchini)cpecpiB377
CSPI07G19650Bottle gourd (USVL1VR-Ls)cpilsiB503
CSPI07G19650Bottle gourd (USVL1VR-Ls)cpilsiB545
CSPI07G19650Melon (DHL92) v3.6.1cpimedB512
CSPI07G19650Melon (DHL92) v3.6.1cpimedB539
CSPI07G19650Melon (DHL92) v3.6.1cpimedB550
CSPI07G19650Cucumber (Gy14) v2cgybcpiB047
CSPI07G19650Silver-seed gourdcarcpiB0508
CSPI07G19650Silver-seed gourdcarcpiB0561
CSPI07G19650Silver-seed gourdcarcpiB0967
CSPI07G19650Cucumber (Chinese Long) v3cpicucB383
CSPI07G19650Watermelon (97103) v2cpiwmbB561