Cp4.1LG12g07070 (gene) Cucurbita pepo (Zucchini)

Overview
NameCp4.1LG12g07070
Typegene
OrganismCucurbita pepo (Cucurbita pepo (Zucchini))
DescriptionUnknown protein
LocationCp4.1LG12 : 7201997 .. 7204380 (+)
Genome Viewer
Sequences
The following sequences are available for this feature:

Gene sequence (with intron)

Legend: five_prime_UTRCDSthree_prime_UTR
Hold the cursor over a type above to highlight its positions in the sequence below.
CAAAGTGACACGTGGATTACGAATAGATTAAGCACCATCCATTCTCCGCCCACGGTTTCTTGTGAGCTCGCTTCTCTTCCGAAGTTCGAAAGTCCTTGTAATACGAGTGAAGGTGAATGGCTTCCATTTTCGCTGCGCCGCCGTCTCGACTGAATCTCACTTCTCGCCCAAGTTTGATTCACGGAGCTGTTCTTCCCTCCTCCACCGCCGGCATTCAATATCACTCCAATGCCTTTCCAATTCCCTCTTTCAGGTATCCATCGTTGTTCGATTCCTCGCATTCAATTTAATTGATCTCTCAGGAGATATCGGGATTTCTATATATGCTGGAATGTGACTAGTGAGCTCGTTAGCAATGAAGTTCATCTGATAATTAATTCTGTAGAGTGGATCGACTTTGATTCTTTTGTTGGAAATGGAATTTTTCCATTTTAGCAGGTAGTTGCTAATTCCTAATTGCTTTTGGCTGCTAACGCCAAGTGCTTCTACTGGTATTAGGTATTGTTTTTCAGAATTTTTATATTATAAGTTTATATGTGACGCACCTTTAATTTGATTCTTACTTGAGCAGTTTTCTTCGATCCCTCGCATTCAACGTTTAGAATCACATAGGATATGCGGATCGTAATGTGTTGAATTGAGCATGTTTGCAGAATCCTATTGCATTTCTGTGTTGATAATGGTATTGGACGATAGCTGCTGCCTTGCTGATTCCTAATTGGTTTCGGCTACTAAAGCAAACAGCTTATACTAAATCCTGGTTGGTTTTGTTTTGGCAAGTAGCGAAAAAGAGCTTATACTAGTATTAGGATTGAGGCTTTATTTTTCTGATCTTGTTCGACATCTAATGGGATGAATCTTTGATTTGATACTCATTTGGTCATTAAACAAGCATGTATAGAATTTTGTCCATTAATTTTTGGTTTCCGGATAAGACTAGGGAAGTCTTATTAGTTCTTCCTGAAAGCTCTTCTTTGATAGGGAAGTTGTTATAATTAATATGTTCGGGAAATGATTGTCCTGAAATGGCCTATATGGTATCTTGAAAAAGAATTTGGATTTTTTTGGGTTAACCACAGCTAAAGCAAAGGGGCAGGAAATAGCAGACCAGAATCCGTCAACTGAGCTGCTAGTCCAACTTCTTGTTGGATGCACAAAGTATCCTCTTGTTGATCCACAAAAAGTGTTAAAATCTTGAAACGATTAACTAAATCCAATTGTCTTCTCAAGTAGTCAGTTGACTGAAAAATGAAGTGAAATGAGTCTGTAACAGCCCTAGCAGCTATTGTCCGCTTTGGTCCGTTGCGTATCGTCGTTAGTCTCACTGTTTTTAAAACGCGTCTATTAGGGAGAGGTTTCCACACTCTTATAAGGAATGTTTCGTACTCCTCTCCAACCGATGTGGGATCTCACAATCCACCCCCCTTGGGGGTTTAGCGTCCTTGCTGACACATCGCTCGGTGTCTGGCTTTGATACCATTTGTAATAGCCAAATCCCACCACTAATAGATATTGTCCGTTTTGGCTCATTACGTATCGCCATCAACCTCATAATTTTTAGAACGCATCAGTTAGGGAGAGGTTTCCACACCCTTATAAGGGATGTTTCATTCTCCTCTCCAACCGATGTGGGATCTCACAAAAACAAACCCATCAGCGTCTCTAAATTCTTACAAGCCAAGGGGATTCTGTCTTTTCAATGATATGGAGTTTCCTCTTTAAAATCCTCTGGAAGTACTGAAGTGGAAAATACAGGTTCCTATCATTCCTGGTTCCATCTTCATTGTCCTTGGTTCTTCGTTTAGGTTTTCGCTTTTTCGCTTGATCTACAAATCTAAATTCTAGACACAATGAGCCTGAGATGACTGATATTTGTTTTCACAATATTGCTACTCAGATTAGTGCTTGCGTGATTCCTTTTATGCAGCTACAGGAACACCAAAGGATTGGAGTTGAGGCAAAGATCTTTTTCTATAACAGCCTCAAATTCCTCAGACAGAAACTCCATCAAGGAGGAAAATGGTTCGAGTAAAGCAAGTAGGGATGCCCAAGGTCCTCCATTTCTTACTATCTTGGCTGGAATTTTTGTCTTTTCCCTCCTACTCTGGATGCTCAGTTCTGCTGCCACTTCACTTATAGGTCTAGTTGTCAAGTTGATCTCAACGAAGTAGTATGCCATTATTGGCATAATTCATGTTGCCTTAGAAGCTTAAACCCGTGTGGTTATATTCCTATCACACAACTCACTTATTAGCTAGTTTTTTTAGCTTACTTCTAATGAATAGTTTTTATTTTCATCTCGTTTATGCCTTGCTTCTGCCTTCAACTATGTTTAATTGTGAGGAAGGAATTATTCACAGGCAGTGACTCCATAAACTATAATT

mRNA sequence

CAAAGTGACACGTGGATTACGAATAGATTAAGCACCATCCATTCTCCGCCCACGGTTTCTTGTGAGCTCGCTTCTCTTCCGAAGTTCGAAAGTCCTTGTAATACGAGTGAAGGTGAATGGCTTCCATTTTCGCTGCGCCGCCGTCTCGACTGAATCTCACTTCTCGCCCAAGTTTGATTCACGGAGCTGTTCTTCCCTCCTCCACCGCCGGCATTCAATATCACTCCAATGCCTTTCCAATTCCCTCTTTCAGCTACAGGAACACCAAAGGATTGGAGTTGAGGCAAAGATCTTTTTCTATAACAGCCTCAAATTCCTCAGACAGAAACTCCATCAAGGAGGAAAATGGTTCGAGTAAAGCAAGTAGGGATGCCCAAGGTCCTCCATTTCTTACTATCTTGGCTGGAATTTTTGTCTTTTCCCTCCTACTCTGGATGCTCAGTTCTGCTGCCACTTCACTTATAGGTCTAGTTGTCAAGTTGATCTCAACGAAGTAGTATGCCATTATTGGCATAATTCATGTTGCCTTAGAAGCTTAAACCCGTGTGGTTATATTCCTATCACACAACTCACTTATTAGCTAGTTTTTTTAGCTTACTTCTAATGAATAGTTTTTATTTTCATCTCGTTTATGCCTTGCTTCTGCCTTCAACTATGTTTAATTGTGAGGAAGGAATTATTCACAGGCAGTGACTCCATAAACTATAATT

Coding sequence (CDS)

ATGGCTTCCATTTTCGCTGCGCCGCCGTCTCGACTGAATCTCACTTCTCGCCCAAGTTTGATTCACGGAGCTGTTCTTCCCTCCTCCACCGCCGGCATTCAATATCACTCCAATGCCTTTCCAATTCCCTCTTTCAGCTACAGGAACACCAAAGGATTGGAGTTGAGGCAAAGATCTTTTTCTATAACAGCCTCAAATTCCTCAGACAGAAACTCCATCAAGGAGGAAAATGGTTCGAGTAAAGCAAGTAGGGATGCCCAAGGTCCTCCATTTCTTACTATCTTGGCTGGAATTTTTGTCTTTTCCCTCCTACTCTGGATGCTCAGTTCTGCTGCCACTTCACTTATAGGTCTAGTTGTCAAGTTGATCTCAACGAAGTAG

Protein sequence

MASIFAAPPSRLNLTSRPSLIHGAVLPSSTAGIQYHSNAFPIPSFSYRNTKGLELRQRSFSITASNSSDRNSIKEENGSSKASRDAQGPPFLTILAGIFVFSLLLWMLSSAATSLIGLVVKLISTK
Homology
[Close]
BLAST of Cp4.1LG12g07070 vs. TrEMBL
Match: A0A0A0K9W1_CUCSA (Uncharacterized protein OS=Cucumis sativus GN=Csa_7G429580 PE=4 SV=1)

HSP 1 Score: 157.5 bits (397), Expect = 1.0e-35
Identity = 95/128 (74.22%), Postives = 102/128 (79.69%), Query Frame = 1 

Query: 1   MASIFAAPPSRLNLTSRPSLIHGAVLPSSTAGIQYHSNAFPIPSFSYR-NTKGLELRQRS 60
           MAS+FAAPPS+LNLTSR S IH A LPS  A IQ+HSNA P PSF YR N  GLELRQRS
Sbjct: 1   MASVFAAPPSQLNLTSRRSSIHRAFLPSYIASIQFHSNASPFPSFRYRKNIIGLELRQRS 60

Query: 61  FSITASNSSDRNSIKEENGSSKASR-DAQGPPFLTILAGIFVFSLLLWMLSSAATSLIGL 120
             I AS S+D NSIKEEN SSKAS  DAQGPPFLTILAG FV SL+LW+ SSA TSL+GL
Sbjct: 61  --IAASKSTDGNSIKEENSSSKASSDDAQGPPFLTILAGFFVLSLILWIFSSAVTSLLGL 120

Query: 121 VVKLISTK 127
           VVKLIS K
Sbjct: 121 VVKLISAK 126

[Close]
BLAST of Cp4.1LG12g07070 vs. NCBI nr
Match: gi|778728761|ref|XP_011659472.1| (PREDICTED: uncharacterized protein LOC101220885 [Cucumis sativus])

HSP 1 Score: 157.5 bits (397), Expect = 1.5e-35
Identity = 95/128 (74.22%), Postives = 102/128 (79.69%), Query Frame = 1 

Query: 1   MASIFAAPPSRLNLTSRPSLIHGAVLPSSTAGIQYHSNAFPIPSFSYR-NTKGLELRQRS 60
           MAS+FAAPPS+LNLTSR S IH A LPS  A IQ+HSNA P PSF YR N  GLELRQRS
Sbjct: 1   MASVFAAPPSQLNLTSRRSSIHRAFLPSYIASIQFHSNASPFPSFRYRKNIIGLELRQRS 60

Query: 61  FSITASNSSDRNSIKEENGSSKASR-DAQGPPFLTILAGIFVFSLLLWMLSSAATSLIGL 120
             I AS S+D NSIKEEN SSKAS  DAQGPPFLTILAG FV SL+LW+ SSA TSL+GL
Sbjct: 61  --IAASKSTDGNSIKEENSSSKASSDDAQGPPFLTILAGFFVLSLILWIFSSAVTSLLGL 120

Query: 121 VVKLISTK 127
           VVKLIS K
Sbjct: 121 VVKLISAK 126

[Close]
BLAST of Cp4.1LG12g07070 vs. NCBI nr
Match: gi|645295443|ref|XP_008245799.1| (PREDICTED: uncharacterized protein LOC103343947 [Prunus mume])

HSP 1 Score: 58.5 bits (140), Expect = 9.5e-06
Identity = 45/123 (36.59%), Postives = 70/123 (56.91%), Query Frame = 1 

Query: 1   MASIFAAPPSRLNLTSRPSLIHGAVLPSSTAGIQYHSNAFPIPSFSYRNTKGLELRQRSF 60
           MAS+ AA  +RL+      +    + P + +       A P+     RN   L++R+   
Sbjct: 3   MASVLAAAQARLSSQLLCPIPQNQI-PITHSVKSSAVKAAPVDFSLERNVLRLKIRESWH 62

Query: 61  SITAS--NSSDRNSIKEENGSSKASRDAQGPPFLTILAGIFVFSLLLWMLSSAATSLIGL 120
           +++AS  NSS+ +S+++++G  K +  AQGPP LTI+AG  VF LL W+L S    LIGL
Sbjct: 63  AVSASNSNSSNGDSVEDKSGGVKTNDAAQGPPLLTIVAGFVVFFLLFWILGSILMWLIGL 122

Query: 121 VVK 122
           VV+
Sbjct: 123 VVR 124

The following BLAST results are available for this feature:
BLAST of Cp4.1LG12g07070 vs. Swiss-Prot
Match NameE-valueIdentityDescription
BLAST of Cp4.1LG12g07070 vs. TrEMBL
Match NameE-valueIdentityDescription
A0A0A0K9W1_CUCSA1.0e-3574.22Uncharacterized protein OS=Cucumis sativus GN=Csa_7G429580 PE=4 SV=1[more]
BLAST of Cp4.1LG12g07070 vs. TAIR10
Match NameE-valueIdentityDescription
BLAST of Cp4.1LG12g07070 vs. NCBI nr
Match NameE-valueIdentityDescription
gi|778728761|ref|XP_011659472.1|1.5e-3574.22PREDICTED: uncharacterized protein LOC101220885 [Cucumis sativus][more]
gi|645295443|ref|XP_008245799.1|9.5e-0636.59PREDICTED: uncharacterized protein LOC103343947 [Prunus mume][more]
GO Annotation
GO Assignments
This gene is annotated with the following GO terms.
Category Term Accession Term Name
biological_process GO:0008150 biological_process
cellular_component GO:0005575 cellular_component
cellular_component GO:0016021 integral component of membrane
molecular_function GO:0003674 molecular_function
Relationships

The following mRNA feature(s) are a part of this gene:

Feature NameUnique NameType
Cp4.1LG12g07070.1Cp4.1LG12g07070.1mRNA


Synteny
The following gene(s) are orthologous to this gene:
GeneOrthologueOrganismBlock
Cp4.1LG12g07070Cucsa.049960Cucumber (Gy14) v1cgycpeB0046
Cp4.1LG12g07070CmaCh17G009270Cucurbita maxima (Rimu)cmacpeB371
Cp4.1LG12g07070CmaCh08G005590Cucurbita maxima (Rimu)cmacpeB902
Cp4.1LG12g07070CmoCh17G008980Cucurbita moschata (Rifu)cmocpeB335
Cp4.1LG12g07070CmoCh08G005510Cucurbita moschata (Rifu)cmocpeB839
Cp4.1LG12g07070Csa7G429580Cucumber (Chinese Long) v2cpecuB161
Cp4.1LG12g07070MELO3C023507Melon (DHL92) v3.5.1cpemeB123
Cp4.1LG12g07070ClCG09G003740Watermelon (Charleston Gray)cpewcgB126
Cp4.1LG12g07070CSPI07G19650Wild cucumber (PI 183967)cpecpiB163
Cp4.1LG12g07070Lsi02G026210Bottle gourd (USVL1VR-Ls)cpelsiB113
Cp4.1LG12g07070CsaV3_7G031470Cucumber (Chinese Long) v3cpecucB0188
Cp4.1LG12g07070Bhi09G000481Wax gourdcpewgoB0201
Cp4.1LG12g07070CsGy7G017970Cucumber (Gy14) v2cgybcpeB906
Cp4.1LG12g07070Carg13474Silver-seed gourdcarcpeB0631
Cp4.1LG12g07070Carg18707Silver-seed gourdcarcpeB0493
The following gene(s) are paralogous to this gene:

None

The following block(s) are covering this gene:
GeneOrganismBlock
Cp4.1LG12g07070Cucurbita pepo (Zucchini)cpecpeB156
Cp4.1LG12g07070Cucurbita pepo (Zucchini)cpecpeB157
Cp4.1LG12g07070Cucurbita pepo (Zucchini)cpecpeB181
Cp4.1LG12g07070Cucurbita pepo (Zucchini)cpecpeB185
Cp4.1LG12g07070Cucurbita maxima (Rimu)cmacpeB260
Cp4.1LG12g07070Cucurbita maxima (Rimu)cmacpeB465
Cp4.1LG12g07070Cucurbita moschata (Rifu)cmocpeB224
Cp4.1LG12g07070Cucurbita moschata (Rifu)cmocpeB425
Cp4.1LG12g07070Wild cucumber (PI 183967)cpecpiB138
Cp4.1LG12g07070Cucumber (Chinese Long) v2cpecuB137
Cp4.1LG12g07070Bottle gourd (USVL1VR-Ls)cpelsiB116
Cp4.1LG12g07070Watermelon (Charleston Gray)cpewcgB134
Cp4.1LG12g07070Watermelon (97103) v1cpewmB131
Cp4.1LG12g07070Melon (DHL92) v3.5.1cpemeB133
Cp4.1LG12g07070Cucumber (Gy14) v2cgybcpeB308
Cp4.1LG12g07070Melon (DHL92) v3.6.1cpemedB150
Cp4.1LG12g07070Silver-seed gourdcarcpeB0732
Cp4.1LG12g07070Silver-seed gourdcarcpeB1144