CSPI07G19650.1 (mRNA) Wild cucumber (PI 183967)

Overview
NameCSPI07G19650.1
TypemRNA
OrganismCucumis sativus (Wild cucumber (PI 183967))
DescriptionUnknown protein
LocationChr7 : 17235837 .. 17238004 (-)
Sequence length381
Genome Viewer
Sequences
The following sequences are available for this feature:

Gene sequence (with intron)

Legend: five_prime_UTRCDSthree_prime_UTR
Hold the cursor over a type above to highlight its positions in the sequence below.
AAATATTGGTATGATAAGAAAATGATACGTAGATTACGAACGGAAGAAGCACCAACCACTCGCTCTTTGTGTCCGGAGGCTCCAAAGTCTTTGTATTACGACTAAGTCACTGACGCTGAAGAATGGCTTCCGTCTTCGCTGCGCCGCCGTCTCAACTGAATCTCACATCCCGCCGGAGTTCGATTCACCGAGCCTTTCTTCCTTCTTACATTGCCAGCATTCAATTTCACTCGAACGCCTCTCCATTTCCTTCTTTCAGGTATCCTTCGTGTAATCACTCTTCTTCGATTCCTCGTATTCAACATTTTAAATCTCTTAGAAAATTTCGGGATTTTTATATGCTGTAATGAGACTAATGAGCATGCTTGCGATGAAGTTCATCTGTTACTTAGTCCTGTAAAGTGGATCGACTGTTTATTTTTGTTGAAAATGGAATGCAGCTGGTAGTTGCTAATTCCTAATTGCTTTTGGCTTCTAACGCAAAGTGCTTCACTAGTATTTGGTTTTATTTTTCTGAGTTTATATTTGACATACCTTTGATTTGATTACTACTTAAGCAGTTTTCTTCGATCTCGGTATTCAACATCTATAATCTCAGGGATATCCGGATTTTTATGTGTTGAATGGAGCATGTTAGCATTAAAGTGAATCCTCCTTGATTTGTGAGTTGAAAGTGGAATTGAACGATTGTCGCTGGCTTGCTGGTTCCTAGTTGGTTTCAGCTACTGACGCAAACAGCTTATTAACGTTCTGAATGTTTTATAGTTTAAATGTTGTGAACCTTTGATTTGATACCTATTTTAGCAGTCCTTTTCGACAAATTGCTTCTGGCTGGCATGTACAGTTTCAAAGGATATCTGAAGTTATTATTTGGTGTTGCACTGTTGTGAGCATTTTAGCATTCAAGTTCGTCTATAACTTTGTTATGTAAAGGTAATCCATTTTGATTCTTGTGCTGAAAATTGAATTTGAAGGTAGTTACTAAACCCTAAGCCCCAATTAAACACGCACAGCCCTCGGGCCAAACAAGGAAGCTCACTCCACTCCACCTAAACCCTCAGCCCAAACAGGCCCAAAGCTTAAATAGTGTTAGGATTGAGACTTCCTGATCTTGTTCGACGTCTACATGGGATGGATCTTTGATTTGATACTTATTTGGTCATTACATGAGCATGAATAGAACTTTGTCCATTATTTTTTGGTTTCTGGTGCAAATAGGGAAAGTCTTATTTGTTCGTTCTGAAGGCTCTTCTCTAATAGTGAAGCAGTTCTACTGTAGATTTCCGGGAAATAATAATTCTACAATGGCCTATATGGTTTCTTGAAAATAGAATTAAAACCTATTATCTTCTCAAATTGTCAGTTGACTCATCTGTGCATTCTCTGCCAAGTTACTCTTTAGATTAATCTTGTGGAGTATTGGGGTGGAAAATAAAATTTCCCATCATTCTTGGTTCCATCTTTTAGGATCTTTATTGGCCTTTGTCTGTTTAGCTTTTCGCTTTTTGGTTTCTTTTCATATCATTTATTACTGGTAATTATTTACTCAGAAAGATATATATGGCAGGCTTGTATAAGGGCCAAACCAGTATCTGAAATTCTCTTTTCACATGCTAAGCAGATTTACTGGAAACTATAATACATTTTAAGAATTAAGAGTATGAAATGACTGATATTTGTATTCGCAATATTTACTTAGACGAGTGCTTATGTGATTTCTTTTATACAGGTACAGGAAGAACATCATTGGATTAGAATTAAGGCAAAGATCTATAGCTGCCTCAAAATCCACAGATGGGAATTCCATCAAGGAGGAAAATAGTTCGAGTAAAGCAAGTAGTGATGATGCCCAAGGTCCTCCATTTCTTACCATTTTAGCTGGATTTTTTGTCTTATCCCTTATACTATGGATATTCAGTTCTGCTGTTACGTCACTTTTAGGTCTAGTCGTCAAGCTGATCTCAGCAAAATAATGTCGCATAATTGGAATAGTTTCATGTTTCTAAGCATAAATCTGTATGGTTATATTTGTAGCAAAACTTACTTTTTAGCCAGTTTTAGCTTTATTTGTAGTGAATAGATTTTGTTTTCATCTTATTTATGCCCTACCTTCAGCTGTCTTCAGGCAATTGAGTTGGTAAATAAATAATTGTGTAGATTAACCCATC

mRNA sequence

ATGGCTTCCGTCTTCGCTGCGCCGCCGTCTCAACTGAATCTCACATCCCGCCGGAGTTCGATTCACCGAGCCTTTCTTCCTTCTTACATTGCCAGCATTCAATTTCACTCGAACGCCTCTCCATTTCCTTCTTTCAGGTACAGGAAGAACATCATTGGATTAGAATTAAGGCAAAGATCTATAGCTGCCTCAAAATCCACAGATGGGAATTCCATCAAGGAGGAAAATAGTTCGAGTAAAGCAAGTAGTGATGATGCCCAAGGTCCTCCATTTCTTACCATTTTAGCTGGATTTTTTGTCTTATCCCTTATACTATGGATATTCAGTTCTGCTGTTACGTCACTTTTAGGTCTAGTCGTCAAGCTGATCTCAGCAAAATAA

Coding sequence (CDS)

ATGGCTTCCGTCTTCGCTGCGCCGCCGTCTCAACTGAATCTCACATCCCGCCGGAGTTCGATTCACCGAGCCTTTCTTCCTTCTTACATTGCCAGCATTCAATTTCACTCGAACGCCTCTCCATTTCCTTCTTTCAGGTACAGGAAGAACATCATTGGATTAGAATTAAGGCAAAGATCTATAGCTGCCTCAAAATCCACAGATGGGAATTCCATCAAGGAGGAAAATAGTTCGAGTAAAGCAAGTAGTGATGATGCCCAAGGTCCTCCATTTCTTACCATTTTAGCTGGATTTTTTGTCTTATCCCTTATACTATGGATATTCAGTTCTGCTGTTACGTCACTTTTAGGTCTAGTCGTCAAGCTGATCTCAGCAAAATAA
Homology
[Close]
BLAST of CSPI07G19650.1 vs. TrEMBL
Match: A0A0A0K9W1_CUCSA (Uncharacterized protein OS=Cucumis sativus GN=Csa_7G429580 PE=4 SV=1)

HSP 1 Score: 231.5 bits (589), Expect = 5.7e-58
Identity = 126/126 (100.00%), Postives = 126/126 (100.00%), Query Frame = 1 

Query: 1   MASVFAAPPSQLNLTSRRSSIHRAFLPSYIASIQFHSNASPFPSFRYRKNIIGLELRQRS 60
           MASVFAAPPSQLNLTSRRSSIHRAFLPSYIASIQFHSNASPFPSFRYRKNIIGLELRQRS
Sbjct: 1   MASVFAAPPSQLNLTSRRSSIHRAFLPSYIASIQFHSNASPFPSFRYRKNIIGLELRQRS 60

Query: 61  IAASKSTDGNSIKEENSSSKASSDDAQGPPFLTILAGFFVLSLILWIFSSAVTSLLGLVV 120
           IAASKSTDGNSIKEENSSSKASSDDAQGPPFLTILAGFFVLSLILWIFSSAVTSLLGLVV
Sbjct: 61  IAASKSTDGNSIKEENSSSKASSDDAQGPPFLTILAGFFVLSLILWIFSSAVTSLLGLVV 120

Query: 121 KLISAK 127
           KLISAK
Sbjct: 121 KLISAK 126

[Close]
BLAST of CSPI07G19650.1 vs. NCBI nr
Match: gi|778728761|ref|XP_011659472.1| (PREDICTED: uncharacterized protein LOC101220885 [Cucumis sativus])

HSP 1 Score: 231.5 bits (589), Expect = 8.2e-58
Identity = 126/126 (100.00%), Postives = 126/126 (100.00%), Query Frame = 1 

Query: 1   MASVFAAPPSQLNLTSRRSSIHRAFLPSYIASIQFHSNASPFPSFRYRKNIIGLELRQRS 60
           MASVFAAPPSQLNLTSRRSSIHRAFLPSYIASIQFHSNASPFPSFRYRKNIIGLELRQRS
Sbjct: 1   MASVFAAPPSQLNLTSRRSSIHRAFLPSYIASIQFHSNASPFPSFRYRKNIIGLELRQRS 60

Query: 61  IAASKSTDGNSIKEENSSSKASSDDAQGPPFLTILAGFFVLSLILWIFSSAVTSLLGLVV 120
           IAASKSTDGNSIKEENSSSKASSDDAQGPPFLTILAGFFVLSLILWIFSSAVTSLLGLVV
Sbjct: 61  IAASKSTDGNSIKEENSSSKASSDDAQGPPFLTILAGFFVLSLILWIFSSAVTSLLGLVV 120

Query: 121 KLISAK 127
           KLISAK
Sbjct: 121 KLISAK 126

[Close]
BLAST of CSPI07G19650.1 vs. NCBI nr
Match: gi|470141540|ref|XP_004306488.1| (PREDICTED: uncharacterized protein LOC101307043 [Fragaria vesca subsp. vesca])

HSP 1 Score: 59.7 bits (143), Expect = 4.3e-06
Identity = 40/88 (45.45%), Postives = 59/88 (67.05%), Query Frame = 1 

Query: 37  SNASPFPSFRYRKNIIGLELRQR--SIAASKST--DGNSIKEENSSSKASSDDAQGPPFL 96
           ++ +PF  FR++K+++ L+LR+R   ++ASKS   D  SI++++ S K S D  QGPPFL
Sbjct: 37  TDQAPF-DFRFKKSVLNLKLRERWQPVSASKSNPRDEESIEDQSGSVK-SGDAPQGPPFL 96

Query: 97  TILAGFFVLSLILWIFSSAVTSLLGLVV 121
           TILAGF VL L+ WI  S +  L+   V
Sbjct: 97  TILAGFLVLFLVFWIIGSILMWLVSFFV 122

The following BLAST results are available for this feature:
BLAST of CSPI07G19650.1 vs. Swiss-Prot
Match NameE-valueIdentityDescription
BLAST of CSPI07G19650.1 vs. TrEMBL
Match NameE-valueIdentityDescription
A0A0A0K9W1_CUCSA5.7e-58100.00Uncharacterized protein OS=Cucumis sativus GN=Csa_7G429580 PE=4 SV=1[more]
BLAST of CSPI07G19650.1 vs. TAIR10
Match NameE-valueIdentityDescription
BLAST of CSPI07G19650.1 vs. NCBI nr
Match NameE-valueIdentityDescription
gi|778728761|ref|XP_011659472.1|8.2e-58100.00PREDICTED: uncharacterized protein LOC101220885 [Cucumis sativus][more]
gi|470141540|ref|XP_004306488.1|4.3e-0645.45PREDICTED: uncharacterized protein LOC101307043 [Fragaria vesca subsp. vesca][more]
GO Annotation
GO Assignments
This mRNA is annotated with the following GO terms.
Category Term Accession Term Name
biological_process GO:0008150 biological_process
cellular_component GO:0005575 cellular_component
molecular_function GO:0003674 molecular_function
Relationships

This mRNA is a part of the following gene feature(s):

Feature NameUnique NameType
CSPI07G19650CSPI07G19650gene


The following polypeptide feature(s) derives from this mRNA:

Feature NameUnique NameType
CSPI07G19650.1CSPI07G19650.1-proteinpolypeptide


The following three_prime_UTR feature(s) are a part of this mRNA:

Feature NameUnique NameType
CSPI07G19650.1.utr3p1CSPI07G19650.1.utr3p1three_prime_UTR


The following CDS feature(s) are a part of this mRNA:

Feature NameUnique NameType
CSPI07G19650.1.cds2CSPI07G19650.1.cds2CDS
CSPI07G19650.1.cds1CSPI07G19650.1.cds1CDS


The following five_prime_UTR feature(s) are a part of this mRNA:

Feature NameUnique NameType
CSPI07G19650.1.utr5p1CSPI07G19650.1.utr5p1five_prime_UTR