CmaCh08G005590.1 (mRNA) Cucurbita maxima (Rimu)

Overview
NameCmaCh08G005590.1
TypemRNA
OrganismCucurbita maxima (Cucurbita maxima (Rimu))
DescriptionCoffea canephora DH200=94 genomic scaffold, scaffold_27
LocationCma_Chr08 : 3190678 .. 3193819 (-)
Sequence length1994
Genome Viewer
Sequences
The following sequences are available for this feature:

Gene sequence (with intron)

Legend: exonfive_prime_UTRCDSthree_prime_UTR
Hold the cursor over a type above to highlight its positions in the sequence below.
TCCACACCCTCCGTGCAGCATCTCGTGCGAACTTTCCTCGTCCGAAGTTGACGAAGTCATTGTAACAAGACTGAAGGTGAATGGCTTCCGTCTTCGCCGCGCCGCCGTCTCAACTGGTCCTCTCTTCTCACCGCCCAAGTTTGGATCACAAAGCCTTTCTTCCTTCCATCGTCGGCGTTAAATTTCATCGGAATGGCTTTCCAATTCCTTCTTTCAGGTATCCTTAGTTTAATCACTCCTCTTCGATCCCTCGCATTCGACTTATTTAATCTCAGTAGATATCAGGTCTGTTGTATATTGTTAATGAGACTAGTGATCAATTTAGTAATGAAGTTCATCTGTTAGTTCTGTGAAGTAGTTCGACTTTGATTCTTTTGTTGATATTTGATAATGGAATCCGGCAGGTTGTTGCTAATTCCTAATTCTTTTTTGCTACTAACGCCAGGTGCTTATAAACTAGTATTATGTTTTGTTTTGTTTTTCTGAATTTTTATTAGTTTGCGTGTAATGTAATGCACCTTTGGGTTGATACCTACTTCAGCAGTCCTCTACGATCCCTCGCATTAGGCACAATTATTTCAGAAGATATCTGGACTGTTACCCTTGCAATGAGCATGTTAACATGGAAGTTCATCTGTTGCTTAGTTCTGTAAAGTGAATCCACCTTGATTCTTGTGATGGAAATGGAATTTGGCAGGTAGTAAAACACTGAATCTTAATTGGTTTTCGCTATGCTACTCCGGCAAGGAACTCATACTAGCATTAGGATTTTGGCTTTATTTTTCTGGTTTTCTTCCAATTCCAAGTTGAAATAGGATGAATCTTTGATTTGATACTTTCTGGCTTCCGGATGCGACTGGGGAAAGTTTATTAGTTCTTTCTGAAAGCTCTTCTCTGATTGTGAAGTAGTTACATTTAAGATTGCCAGAAAATGATAATTCTGGAATGGCCTCTATAATTTCTTCGAAAAAAAATTTAGACTTTTTAGATGAATAACAGCTGTTGGAAGAACCACAGTAATAATAAATGGTTTAAATCTTACAACAATTAATTTGAATTCTATCGTCTTCTCAAGTTGTCAGTTGACTCAACAATTAATTTGGAGTTTCCTCTTTCAAACTTTCTGGAAGTATTGGTGCATACTGTTTCCTATCATTCATGGTTCGATCTTTATGGTATTTTGTCGGTTTAGACTTTCATTTACTTCAACTCTTTCCTCACAAAGACATCATATACTTATATAAAACTAAATCAGTAGCTGAGATCCTCCTTGCATCTGCCAGAAATTAGAACACAACTAGTCTGAGATGACTGATACTTGTAATCACAATATTGCTACTCAGCTGAGTGGTTGTGTGCTTTCTTTTATGCAGGTACAAGAACACCAAAGGATTGAAATTGAGGCAAAGATCTTTTTCTATAACAGCATCAAATTCCTCAGATGGGAATTCCACCAAGGAGGAAAATGATGGAAGTAAAGTAACTGGTGATGCCCAAGGTCCTCCATTTCTTACCATTTTGGCTGGATTTTTTGTCTTTTCCCTCGTCCTTTGGATAGTCAGTTCCTCTGTCACAACCCTTATAGCTCTAGTCGTCAAGTTGATCTCAACAAAGTAGTGTTGCATTATTGGCAAAATTTCATGTTTAGTTTCCTCTCAATTATGTTTAGTTTTGGGGGAAGGACCTGAATATAGGCAGTTGATTTGGTAAGACTTAAGTACTAAATGTACATTGACTCATTTTGTAGTAATCTAGTTGAATCTTCTTTCTTTATATGTCATTTTCTAGAGTCGTTACCATCATTCTTATTCCCATCCAGATTAAAATCTAATGGCAAAGGGAACAAGAACTAAATGGTACTATACTTGGACAATGATGAAGGATTTCTACAGAACAAGGTGGCAAAATATATTATCCGTTGGAGAAATTACATTCCAAACAGTGGTAGAACACATTCCTTTATGGAATATAACAAAATTGTGATAGAGAATTTAAATTACTTTACTTGGCCCTTAAATAAACCAAAAGAAAAAGTGTATATATATTATATATGTCTAACTAGCACAATTCTTTTCTGTTTCTGAATTTTCTCCAGCTGAAGCTGTAAACTTCCGCCGGTCATCAGTGGAAGCAGTTATCACCGGCATCCAAATATCAGCAGTATGACTCAAAAGAGACTGCACCTGTGGGTCAGCAGCCATTGCTGAAGAAATCATTTCATCCACATCGTCTAGCTTTTCAGATAACTTATCCAACTCCTTCGCAAGTTCCATCTGAATAAATAGGAAATTGACTTTTTAGACATTAGATTCAATCTCTTCAAGAAAATGTTGATAAATGCAATGAGTGTATGAAGGAAACCAGACGGACTTCATCGAGCTGCTTTAAGGACTTTGAGGGTACTTTTGTTACTTCAAGTCCAAGGGCTTCGATCTTCATACGAAGCTCAACTTCCTCCTGGTTGGTCAGTGATTCCACCTGCAAGATAATTGCATCTTAGGAAAGAAAAGAGCAGAGAAGTTCACAAAATTTCCTGGCATGGATGGATATGTCCGAGCAGGTATTTCTGACGAGGATTATTGAAAGAATTAGTCCTACATTGACTAATTAAGAAGAAGAGCATGAGTTTATAAATAAGGAACACTATTTTTATGAGAGCTTAGACTAAAAGGTGGACAATATCTGTGGAGGGTCGTGGCTTCTTCATCAGATATTATGTTCATCTCCCTAAGTTACCTATTCCCAGCCTTTCCCAACCCAACTCTAGTGTAAATCTACAATGTAACGGTTCAAGCCCACTGTTAACAATATTGCCCGCCTTTGAAATTTTTCCTCAACATTTTTAAAATGCATCTATTAGGGAGAGGTTTCCACACCCTTGTAAATAATGTTTCGTTCTCCTCCTCGTGAATGAGGTTAGATCCATCGTCCGGACTGAAGAATTCCAATTCATAGACAACCAATCCAATCAGGAAAAGAATCAGAAACAAGAAGAAGGTAAATGGCAGCAAATGAAATGAACATAGGGAAATAAAAGCGAAAGTGGATGAATGAATGAGGAGGAAAATGGAGGGAAATTATGACCTGGTGAAGAAGACTGGCAAGAAGCTGGAATAGTTGCTCGTCCGCCTTCCATTTCTCG

mRNA sequence

TCCACACCCTCCGTGCAGCATCTCGTGCGAACTTTCCTCGTCCGAAGTTGACGAAGTCATTGTAACAAGACTGAAGGTGAATGGCTTCCGTCTTCGCCGCGCCGCCGTCTCAACTGGTCCTCTCTTCTCACCGCCCAAGTTTGGATCACAAAGCCTTTCTTCCTTCCATCGTCGGCGTTAAATTTCATCGGAATGGCTTTCCAATTCCTTCTTTCAGATATCAGTTTGCGTGTAATGTAATGCACCTTTGGGTTGATACCTACTTCAGCAGTCCTCTACGATCCCTCGCATTAGGCACAATTATTTCAGAAGATATCTGGACTGTTACCCTTGCAATGAGCATGTTAACATGGAAGTTCATCTGTTGCTTAGTTCTGTACAAGAACACCAAAGGATTGAAATTGAGGCAAAGATCTTTTTCTATAACAGCATCAAATTCCTCAGATGGGAATTCCACCAAGGAGGAAAATGATGGAAGTAAAGTAACTGGTGATGCCCAAGGTCCTCCATTTCTTACCATTTTGGCTGGATTTTTTGTCTTTTCCCTCGTCCTTTGGATAGTCAGTTCCTCTGTCACAACCCTTATAGCTCTAGTCGTCAAGTTGATCTCAACAAAGTAGTGTTGCATTATTGGCAAAATTTCATGTTTAGTTTCCTCTCAATTATGTTTAGTTTTGGGGGAAGGACCTGAATATAGGCAGTTGATTTGGTAAGACTTAAGTACTAAATGTACATTGACTCATTTTGTAGTAATCTAGTTGAATCTTCTTTCTTTATATGTCATTTTCTAGAGTCGTTACCATCATTCTTATTCCCATCCAGATTAAAATCTAATGGCAAAGGGAACAAGAACTAAATGGTACTATACTTGGACAATGATGAAGGATTTCTACAGAACAAGGTGGCAAAATATATTATCCGTTGGAGAAATTACATTCCAAACAGTGCTGAAGCTGTAAACTTCCGCCGGTCATCAGTGGAAGCAGTTATCACCGGCATCCAAATATCAGCAGTATGACTCAAAAGAGACTGCACCTGTGGGTCAGCAGCCATTGCTGAAGAAATCATTTCATCCACATCGTCTAGCTTTTCAGATAACTTATCCAACTCCTTCGCAAGTTCCATCTGAATAAATAGGAAATTGACTTTTTAGACATTAGATTCAATCTCTTCAAGAAAATGTTGATAAATGCAATGAGTGTATGAAGGAAACCAGACGGACTTCATCGAGCTGCTTTAAGGACTTTGAGGGTACTTTTGTTACTTCAAGTCCAAGGGCTTCGATCTTCATACGAAGCTCAACTTCCTCCTGGTTGGTCAGTGATTCCACCTGCAAGATAATTGCATCTTAGGAAAGAAAAGAGCAGAGAAGTTCACAAAATTTCCTGGCATGGATGGATATGTCCGAGCAGGTATTTCTGACGAGGATTATTGAAAGAATTAGTCCTACATTGACTAATTAAGAAGAAGAGCATGAGTTTATAAATAAGGAACACTATTTTTATGAGAGCTTAGACTAAAAGGTGGACAATATCTGTGGAGGGTCGTGGCTTCTTCATCAGATATTATGTTCATCTCCCTAAGTTACCTATTCCCAGCCTTTCCCAACCCAACTCTAGTGTAAATCTACAATGTAACGGTTCAAGCCCACTGTTAACAATATTGCCCGCCTTTGAAATTTTTCCTCAACATTTTTAAAATGCATCTATTAGGGAGAGGTTTCCACACCCTTGTAAATAATGTTTCGTTCTCCTCCTCGTGAATGAGGTTAGATCCATCGTCCGGACTGAAGAATTCCAATTCATAGACAACCAATCCAATCAGGAAAAGAATCAGAAACAAGAAGAAGGTAAATGGCAGCAAATGAAATGAACATAGGGAAATAAAAGCGAAAGTGGATGAATGAATGAGGAGGAAAATGGAGGGAAATTATGACCTGGTGAAGAAGACTGGCAAGAAGCTGGAATAGTTGCTCGTCCGCCTTCCATTTCTCG

Coding sequence (CDS)

ATGGCTTCCGTCTTCGCCGCGCCGCCGTCTCAACTGGTCCTCTCTTCTCACCGCCCAAGTTTGGATCACAAAGCCTTTCTTCCTTCCATCGTCGGCGTTAAATTTCATCGGAATGGCTTTCCAATTCCTTCTTTCAGATATCAGTTTGCGTGTAATGTAATGCACCTTTGGGTTGATACCTACTTCAGCAGTCCTCTACGATCCCTCGCATTAGGCACAATTATTTCAGAAGATATCTGGACTGTTACCCTTGCAATGAGCATGTTAACATGGAAGTTCATCTGTTGCTTAGTTCTGTACAAGAACACCAAAGGATTGAAATTGAGGCAAAGATCTTTTTCTATAACAGCATCAAATTCCTCAGATGGGAATTCCACCAAGGAGGAAAATGATGGAAGTAAAGTAACTGGTGATGCCCAAGGTCCTCCATTTCTTACCATTTTGGCTGGATTTTTTGTCTTTTCCCTCGTCCTTTGGATAGTCAGTTCCTCTGTCACAACCCTTATAGCTCTAGTCGTCAAGTTGATCTCAACAAAGTAG

Protein sequence

MASVFAAPPSQLVLSSHRPSLDHKAFLPSIVGVKFHRNGFPIPSFRYQFACNVMHLWVDTYFSSPLRSLALGTIISEDIWTVTLAMSMLTWKFICCLVLYKNTKGLKLRQRSFSITASNSSDGNSTKEENDGSKVTGDAQGPPFLTILAGFFVFSLVLWIVSSSVTTLIALVVKLISTK
Homology
[Close]
BLAST of CmaCh08G005590.1 vs. TrEMBL
Match: A0A0A0K9W1_CUCSA (Uncharacterized protein OS=Cucumis sativus GN=Csa_7G429580 PE=4 SV=1)

HSP 1 Score: 93.6 bits (231), Expect = 2.6e-16
Identity = 57/80 (71.25%), Postives = 64/80 (80.00%), Query Frame = 1 

Query: 101 KNTKGLKLRQRSFSITASNSSDGNSTKEENDGSKVTG-DAQGPPFLTILAGFFVFSLVLW 160
           KN  GL+LRQRS  I AS S+DGNS KEEN  SK +  DAQGPPFLTILAGFFV SL+LW
Sbjct: 49  KNIIGLELRQRS--IAASKSTDGNSIKEENSSSKASSDDAQGPPFLTILAGFFVLSLILW 108

Query: 161 IVSSSVTTLIALVVKLISTK 180
           I SS+VT+L+ LVVKLIS K
Sbjct: 109 IFSSAVTSLLGLVVKLISAK 126

[Close]
BLAST of CmaCh08G005590.1 vs. TrEMBL
Match: M5X7Q1_PRUPE (Uncharacterized protein (Fragment) OS=Prunus persica GN=PRUPE_ppa024515mg PE=4 SV=1)

HSP 1 Score: 59.3 bits (142), Expect = 5.5e-06
Identity = 36/78 (46.15%), Postives = 53/78 (67.95%), Query Frame = 1 

Query: 99  LYKNTKGLKLRQRSFSITASNS--SDGNSTKEENDGSKVTGDAQGPPFLTILAGFFVFSL 158
           L +N   LK+R+   +++ASNS  S G+S ++++ G K    AQGPP LTI+AGF VF L
Sbjct: 1   LERNVLRLKIRESWHAVSASNSNPSSGDSVEDKSGGVKTNDAAQGPPLLTIVAGFVVFFL 60

Query: 159 VLWIVSSSVTTLIALVVK 175
           + WI+ S++  LI LVV+
Sbjct: 61  LFWILGSTLMWLIGLVVR 78

[Close]
BLAST of CmaCh08G005590.1 vs. NCBI nr
Match: gi|778728761|ref|XP_011659472.1| (PREDICTED: uncharacterized protein LOC101220885 [Cucumis sativus])

HSP 1 Score: 93.6 bits (231), Expect = 3.8e-16
Identity = 57/80 (71.25%), Postives = 64/80 (80.00%), Query Frame = 1 

Query: 101 KNTKGLKLRQRSFSITASNSSDGNSTKEENDGSKVTG-DAQGPPFLTILAGFFVFSLVLW 160
           KN  GL+LRQRS  I AS S+DGNS KEEN  SK +  DAQGPPFLTILAGFFV SL+LW
Sbjct: 49  KNIIGLELRQRS--IAASKSTDGNSIKEENSSSKASSDDAQGPPFLTILAGFFVLSLILW 108

Query: 161 IVSSSVTTLIALVVKLISTK 180
           I SS+VT+L+ LVVKLIS K
Sbjct: 109 IFSSAVTSLLGLVVKLISAK 126

[Close]
BLAST of CmaCh08G005590.1 vs. NCBI nr
Match: gi|1009106006|ref|XP_015902239.1| (PREDICTED: uncharacterized protein LOC107435163 [Ziziphus jujuba])

HSP 1 Score: 63.9 bits (154), Expect = 3.2e-07
Identity = 37/74 (50.00%), Postives = 54/74 (72.97%), Query Frame = 1 

Query: 101 KNTKGLKLRQRSFSITASNS--SDGNSTKEENDGSKVTGDAQGPPFLTILAGFFVFSLVL 160
           K+   L+  QR F++ ASN+  S G+ST+E++ G+K +  AQGPPFLTILAGF V  L++
Sbjct: 54  KDVLRLQTGQRQFAVYASNTNPSGGDSTEEKSAGTKTSDAAQGPPFLTILAGFLVLFLIV 113

Query: 161 WIVSSSVTTLIALV 173
           WIV S ++ LI+L+
Sbjct: 114 WIVGSIISWLISLI 127

[Close]
BLAST of CmaCh08G005590.1 vs. NCBI nr
Match: gi|596053436|ref|XP_007220770.1| (hypothetical protein PRUPE_ppa024515mg, partial [Prunus persica])

HSP 1 Score: 59.3 bits (142), Expect = 7.9e-06
Identity = 36/78 (46.15%), Postives = 53/78 (67.95%), Query Frame = 1 

Query: 99  LYKNTKGLKLRQRSFSITASNS--SDGNSTKEENDGSKVTGDAQGPPFLTILAGFFVFSL 158
           L +N   LK+R+   +++ASNS  S G+S ++++ G K    AQGPP LTI+AGF VF L
Sbjct: 1   LERNVLRLKIRESWHAVSASNSNPSSGDSVEDKSGGVKTNDAAQGPPLLTIVAGFVVFFL 60

Query: 159 VLWIVSSSVTTLIALVVK 175
           + WI+ S++  LI LVV+
Sbjct: 61  LFWILGSTLMWLIGLVVR 78

The following BLAST results are available for this feature:
BLAST of CmaCh08G005590.1 vs. Swiss-Prot
Match NameE-valueIdentityDescription
BLAST of CmaCh08G005590.1 vs. TrEMBL
Match NameE-valueIdentityDescription
A0A0A0K9W1_CUCSA2.6e-1671.25Uncharacterized protein OS=Cucumis sativus GN=Csa_7G429580 PE=4 SV=1[more]
M5X7Q1_PRUPE5.5e-0646.15Uncharacterized protein (Fragment) OS=Prunus persica GN=PRUPE_ppa024515mg PE=4 S... [more]
BLAST of CmaCh08G005590.1 vs. TAIR10
Match NameE-valueIdentityDescription
BLAST of CmaCh08G005590.1 vs. NCBI nr
Match NameE-valueIdentityDescription
gi|778728761|ref|XP_011659472.1|3.8e-1671.25PREDICTED: uncharacterized protein LOC101220885 [Cucumis sativus][more]
gi|1009106006|ref|XP_015902239.1|3.2e-0750.00PREDICTED: uncharacterized protein LOC107435163 [Ziziphus jujuba][more]
gi|596053436|ref|XP_007220770.1|7.9e-0646.15hypothetical protein PRUPE_ppa024515mg, partial [Prunus persica][more]
GO Annotation
GO Assignments
This mRNA is annotated with the following GO terms.
Category Term Accession Term Name
biological_process GO:0008150 biological_process
cellular_component GO:0005575 cellular_component
molecular_function GO:0003674 molecular_function
Relationships

This mRNA is a part of the following gene feature(s):

Feature NameUnique NameType
CmaCh08G005590CmaCh08G005590gene


The following polypeptide feature(s) derives from this mRNA:

Feature NameUnique NameType
CmaCh08G005590.1CmaCh08G005590.1-proteinpolypeptide


The following three_prime_UTR feature(s) are a part of this mRNA:

Feature NameUnique NameType
CmaCh08G005590.1.three_prime_UTR.2CmaCh08G005590.1.three_prime_UTR.2three_prime_UTR
CmaCh08G005590.1.three_prime_UTR.1CmaCh08G005590.1.three_prime_UTR.1three_prime_UTR


The following CDS feature(s) are a part of this mRNA:

Feature NameUnique NameType
CmaCh08G005590.1.CDS.4CmaCh08G005590.1.CDS.4CDS
CmaCh08G005590.1.CDS.3CmaCh08G005590.1.CDS.3CDS
CmaCh08G005590.1.CDS.2CmaCh08G005590.1.CDS.2CDS
CmaCh08G005590.1.CDS.1CmaCh08G005590.1.CDS.1CDS


The following five_prime_UTR feature(s) are a part of this mRNA:

Feature NameUnique NameType
CmaCh08G005590.1.five_prime_UTR.1CmaCh08G005590.1.five_prime_UTR.1five_prime_UTR


The following exon feature(s) are a part of this mRNA:

Feature NameUnique NameType
CmaCh08G005590.1.exon.5CmaCh08G005590.1.exon.5exon
CmaCh08G005590.1.exon.4CmaCh08G005590.1.exon.4exon
CmaCh08G005590.1.exon.3CmaCh08G005590.1.exon.3exon
CmaCh08G005590.1.exon.2CmaCh08G005590.1.exon.2exon
CmaCh08G005590.1.exon.1CmaCh08G005590.1.exon.1exon