CmaCh04G006120 (gene) Cucurbita maxima (Rimu) | Cucurbit Genomics Database (CuGenDB)

Overview


Name	CmaCh04G006120
Type	gene
Organism	Cucurbita maxima (Cucurbita maxima (Rimu))
Description	3-isopropylmalate dehydratase large subunit
Location	Cma_Chr04 : 3126013 .. 3126418 (-)

Genome Viewer

Gene Expression

Sequences

The following sequences are available for this feature:

Gene sequence (with intron)

Legend: exonfive_prime_UTRCDS

Hold the cursor over a type above to highlight its positions in the sequence below.

CTCCAAAGGGCAAAGGGCAAATACGACTCAACTCCACAGAAACTTGGATCCTCAAAATCAAATTTGTAGAGAAAGCGAAAATGGATGGATTGCAGCAATGGGGGGTTCCATTGGTGGGCATTGTTGCAGCGGCAGCCATTACCTTCTACGCCGTAAGCTTTTCTGAGATTCGAGAGGTATCCTTCTTTCTCCCTCTTCTTTTATTTTGAGATCATGAATATGTTGTCGCTGTTCGTTCTCTGTTTGTGATTATGATGGAAAATTAATGGTTTAAATCTGGAGGAATGTGAAGAAATCATTCAGAGATTTGGATGAATCTGAGGATGAGAATCGAGGGTTTAAGATGACTGCGAGTTCGAGAGAGAGGCGAGCGAGAAGGAAGGCTGAAAAGGAAGCGAAACGATGA

mRNA sequence

CTCCAAAGGGCAAAGGGCAAATACGACTCAACTCCACAGAAACTTGGATCCTCAAAATCAAATTTGTAGAGAAAGCGAAAATGGATGGATTGCAGCAATGGGGGGTTCCATTGGTGGGCATTGTTGCAGCGGCAGCCATTACCTTCTACGCCGTAAGCTTTTCTGAGATTCGAGAGAAATCATTCAGAGATTTGGATGAATCTGAGGATGAGAATCGAGGGTTTAAGATGACTGCGAGTTCGAGAGAGAGGCGAGCGAGAAGGAAGGCTGAAAAGGAAGCGAAACGATGA

Coding sequence (CDS)

ATGGATGGATTGCAGCAATGGGGGGTTCCATTGGTGGGCATTGTTGCAGCGGCAGCCATTACCTTCTACGCCGTAAGCTTTTCTGAGATTCGAGAGAAATCATTCAGAGATTTGGATGAATCTGAGGATGAGAATCGAGGGTTTAAGATGACTGCGAGTTCGAGAGAGAGGCGAGCGAGAAGGAAGGCTGAAAAGGAAGCGAAACGATGA

Protein sequence

MDGLQQWGVPLVGIVAAAAITFYAVSFSEIREKSFRDLDESEDENRGFKMTASSRERRARRKAEKEAKR

Homology

[Close]

BLAST of CmaCh04G006120 vs. TrEMBL
Match: A0A0A0KVD4_CUCSA (Uncharacterized protein OS=Cucumis sativus GN=Csa_4G056810 PE=4 SV=1)

HSP 1 Score: 106.3 bits (264), Expect = 1.5e-20
Identity = 56/69 (81.16%), Postives = 65/69 (94.20%), Query Frame = 1


Query: 1  MDGLQQWGVPLVGIVAAAAITFYAVSFSEIREKSFRDLDESEDENRGFKMTASSRERRAR 60
          MDGLQ+ G+P++GIVAAAAITFYAVSFSE+REKSF+DLDE ED+  GF+MT+SSRERRAR
Sbjct: 1  MDGLQEMGIPMLGIVAAAAITFYAVSFSELREKSFKDLDELEDQKGGFQMTSSSRERRAR 60

Query: 61 RKAEKEAKR 70
          RKAEKEAKR
Sbjct: 61 RKAEKEAKR 69

[Close]

BLAST of CmaCh04G006120 vs. TrEMBL
Match: W9R0M3_9ROSA (Uncharacterized protein OS=Morus notabilis GN=L484_009330 PE=4 SV=1)

HSP 1 Score: 97.1 bits (240), Expect = 9.2e-18
Identity = 51/68 (75.00%), Postives = 61/68 (89.71%), Query Frame = 1


Query: 1  MDGLQQWGVPLVGIVAAAAITFYAVSFSEIREKSFRDLDESEDENRGFKMTASSRERRAR 60
          MDG  Q G+P++GIVAAAA+TFYAVSF+EIREKSFRDLD+SE EN G+K + SSRERRAR
Sbjct: 1  MDGFNQIGLPILGIVAAAAVTFYAVSFAEIREKSFRDLDDSEAENEGYKPSPSSRERRAR 60

Query: 61 RKAEKEAK 69
          RKA+KE+K
Sbjct: 61 RKAQKESK 68

[Close]

BLAST of CmaCh04G006120 vs. TrEMBL
Match: V4UTQ1_9ROSI (Uncharacterized protein OS=Citrus clementina GN=CICLE_v10013268mg PE=4 SV=1)

HSP 1 Score: 90.5 bits (223), Expect = 8.6e-16
Identity = 51/70 (72.86%), Postives = 63/70 (90.00%), Query Frame = 1


Query: 1  MDGLQQWGVPLVGIVAAAAITFYAVSFSEIREKSFRDL-DESEDEN-RGFKMTASSRERR 60
          MDG+ Q G+P++GIVAAAA+TFYAVSF+E+REKSFRDL DESEDEN  GF+ + SSRERR
Sbjct: 1  MDGMMQMGLPVLGIVAAAAVTFYAVSFAELREKSFRDLDDESEDENGGGFQKSLSSRERR 60

Query: 61 ARRKAEKEAK 69
          +RRKA+K+AK
Sbjct: 61 SRRKADKQAK 70

[Close]

BLAST of CmaCh04G006120 vs. TrEMBL
Match: A0A067FLP3_CITSI (Uncharacterized protein OS=Citrus sinensis GN=CISIN_1g035171mg PE=4 SV=1)

HSP 1 Score: 90.5 bits (223), Expect = 8.6e-16
Identity = 51/70 (72.86%), Postives = 63/70 (90.00%), Query Frame = 1


Query: 1  MDGLQQWGVPLVGIVAAAAITFYAVSFSEIREKSFRDL-DESEDEN-RGFKMTASSRERR 60
          MDG+ Q G+P++GIVAAAA+TFYAVSF+E+REKSFRDL DESEDEN  GF+ + SSRERR
Sbjct: 1  MDGMMQMGLPVLGIVAAAAVTFYAVSFAELREKSFRDLDDESEDENGGGFQKSLSSRERR 60

Query: 61 ARRKAEKEAK 69
          +RRKA+K+AK
Sbjct: 61 SRRKADKQAK 70

[Close]

BLAST of CmaCh04G006120 vs. TrEMBL
Match: D7TUC7_VITVI (Putative uncharacterized protein OS=Vitis vinifera GN=VIT_03s0017g01710 PE=4 SV=1)

HSP 1 Score: 84.7 bits (208), Expect = 4.7e-14
Identity = 48/68 (70.59%), Postives = 58/68 (85.29%), Query Frame = 1


Query: 1  MDGLQQWGVPLVGIVAAAAITFYAVSFSEIREKSFRDLDESEDENRGFKMTASSRERRAR 60
          MD +Q  G+P++GIVA AAITFYAVSF+EIREKSFRDL++SE EN GFK + SSR+RRA 
Sbjct: 1  MDAMQV-GLPILGIVAVAAITFYAVSFAEIREKSFRDLEDSESENVGFKSSMSSRKRRAS 60

Query: 61 RKAEKEAK 69
          RKAEK+ K
Sbjct: 61 RKAEKQDK 67

[Close]

BLAST of CmaCh04G006120 vs. TAIR10
Match: AT3G22210.1 (AT3G22210.1 unknown protein)

HSP 1 Score: 68.9 bits (167), Expect = 1.4e-12
Identity = 37/66 (56.06%), Postives = 54/66 (81.82%), Query Frame = 1


Query: 1  MDGLQQWGVPLVGIVAAAAITFYAVSFSEIREKSFRDLDESEDENRGFKMTASSRERRAR 60
          M+G+    +P++GIVA + +TFYAVSF+EIREKSF+D+ +SE+E  GFK + SSRERR++
Sbjct: 1  MEGISHIALPVLGIVAVSVVTFYAVSFAEIREKSFKDVYDSENE-VGFKTSLSSRERRSK 60

Query: 61 RKAEKE 67
          R+A K+
Sbjct: 61 REANKK 65

[Close]

BLAST of CmaCh04G006120 vs. NCBI nr
Match: gi|449460002|ref|XP_004147735.1| (PREDICTED: uncharacterized protein LOC101211279 [Cucumis sativus])

HSP 1 Score: 106.3 bits (264), Expect = 2.2e-20
Identity = 56/69 (81.16%), Postives = 65/69 (94.20%), Query Frame = 1


Query: 1  MDGLQQWGVPLVGIVAAAAITFYAVSFSEIREKSFRDLDESEDENRGFKMTASSRERRAR 60
          MDGLQ+ G+P++GIVAAAAITFYAVSFSE+REKSF+DLDE ED+  GF+MT+SSRERRAR
Sbjct: 1  MDGLQEMGIPMLGIVAAAAITFYAVSFSELREKSFKDLDELEDQKGGFQMTSSSRERRAR 60

Query: 61 RKAEKEAKR 70
          RKAEKEAKR
Sbjct: 61 RKAEKEAKR 69

[Close]

BLAST of CmaCh04G006120 vs. NCBI nr
Match: gi|659101992|ref|XP_008451897.1| (PREDICTED: uncharacterized protein LOC103493052 [Cucumis melo])

HSP 1 Score: 106.3 bits (264), Expect = 2.2e-20
Identity = 56/69 (81.16%), Postives = 65/69 (94.20%), Query Frame = 1


Query: 1  MDGLQQWGVPLVGIVAAAAITFYAVSFSEIREKSFRDLDESEDENRGFKMTASSRERRAR 60
          MDGLQ+ G+P++GIVAAAAITFYAVSFSE+REKSF+DLDE ED+  GF+MT+SSRERRAR
Sbjct: 1  MDGLQEMGIPILGIVAAAAITFYAVSFSELREKSFKDLDELEDQKGGFQMTSSSRERRAR 60

Query: 61 RKAEKEAKR 70
          RKAEKEAKR
Sbjct: 61 RKAEKEAKR 69

[Close]

BLAST of CmaCh04G006120 vs. NCBI nr
Match: gi|1009127823|ref|XP_015880899.1| (PREDICTED: uncharacterized protein LOC107416862 [Ziziphus jujuba])

HSP 1 Score: 97.1 bits (240), Expect = 1.3e-17
Identity = 51/68 (75.00%), Postives = 61/68 (89.71%), Query Frame = 1


Query: 1  MDGLQQWGVPLVGIVAAAAITFYAVSFSEIREKSFRDLDESEDENRGFKMTASSRERRAR 60
          MDGLQQ G+P++GIVAAAA+TFYAVSF+EIREKSFRD ++SE EN GF+   SSRE+RAR
Sbjct: 1  MDGLQQIGLPILGIVAAAAVTFYAVSFNEIREKSFRDFEDSETENEGFRRFPSSREKRAR 60

Query: 61 RKAEKEAK 69
          RKAEK+AK
Sbjct: 61 RKAEKDAK 68

[Close]

BLAST of CmaCh04G006120 vs. NCBI nr
Match: gi|703086927|ref|XP_010093138.1| (hypothetical protein L484_009330 [Morus notabilis])

HSP 1 Score: 97.1 bits (240), Expect = 1.3e-17
Identity = 51/68 (75.00%), Postives = 61/68 (89.71%), Query Frame = 1


Query: 1  MDGLQQWGVPLVGIVAAAAITFYAVSFSEIREKSFRDLDESEDENRGFKMTASSRERRAR 60
          MDG  Q G+P++GIVAAAA+TFYAVSF+EIREKSFRDLD+SE EN G+K + SSRERRAR
Sbjct: 1  MDGFNQIGLPILGIVAAAAVTFYAVSFAEIREKSFRDLDDSEAENEGYKPSPSSRERRAR 60

Query: 61 RKAEKEAK 69
          RKA+KE+K
Sbjct: 61 RKAQKESK 68

[Close]

BLAST of CmaCh04G006120 vs. NCBI nr
Match: gi|1009172053|ref|XP_015867063.1| (PREDICTED: uncharacterized protein LOC107404608 [Ziziphus jujuba])

HSP 1 Score: 95.9 bits (237), Expect = 2.9e-17
Identity = 50/68 (73.53%), Postives = 61/68 (89.71%), Query Frame = 1


Query: 1  MDGLQQWGVPLVGIVAAAAITFYAVSFSEIREKSFRDLDESEDENRGFKMTASSRERRAR 60
          MDGLQQ G+P++GIVAAAA+TFYAVSF+EIREKSFRD ++S+ EN GF+   SSRE+RAR
Sbjct: 1  MDGLQQIGLPILGIVAAAAVTFYAVSFNEIREKSFRDFEDSDTENEGFRRFPSSREKRAR 60

Query: 61 RKAEKEAK 69
          RKAEK+AK
Sbjct: 61 RKAEKDAK 68

The following BLAST results are available for this feature:

BLAST of CmaCh04G006120 vs. Swiss-Prot


Match Name	E-value	Identity	Description

BLAST of CmaCh04G006120 vs. TrEMBL


Match Name	E-value	Identity	Description
A0A0A0KVD4_CUCSA	1.5e-20	81.16	Uncharacterized protein OS=Cucumis sativus GN=Csa_4G056810 PE=4 SV=1	[more]
W9R0M3_9ROSA	9.2e-18	75.00	Uncharacterized protein OS=Morus notabilis GN=L484_009330 PE=4 SV=1	[more]
V4UTQ1_9ROSI	8.6e-16	72.86	Uncharacterized protein OS=Citrus clementina GN=CICLE_v10013268mg PE=4 SV=1	[more]
A0A067FLP3_CITSI	8.6e-16	72.86	Uncharacterized protein OS=Citrus sinensis GN=CISIN_1g035171mg PE=4 SV=1	[more]
D7TUC7_VITVI	4.7e-14	70.59	Putative uncharacterized protein OS=Vitis vinifera GN=VIT_03s0017g01710 PE=4 SV=...	[more]

BLAST of CmaCh04G006120 vs. TAIR10


Match Name	E-value	Identity	Description
AT3G22210.1	1.4e-12	56.06	unknown protein	[more]

BLAST of CmaCh04G006120 vs. NCBI nr


Match Name	E-value	Identity	Description
gi\|449460002\|ref\|XP_004147735.1\|	2.2e-20	81.16	PREDICTED: uncharacterized protein LOC101211279 [Cucumis sativus]	[more]
gi\|659101992\|ref\|XP_008451897.1\|	2.2e-20	81.16	PREDICTED: uncharacterized protein LOC103493052 [Cucumis melo]	[more]
gi\|1009127823\|ref\|XP_015880899.1\|	1.3e-17	75.00	PREDICTED: uncharacterized protein LOC107416862 [Ziziphus jujuba]	[more]
gi\|703086927\|ref\|XP_010093138.1\|	1.3e-17	75.00	hypothetical protein L484_009330 [Morus notabilis]	[more]
gi\|1009172053\|ref\|XP_015867063.1\|	2.9e-17	73.53	PREDICTED: uncharacterized protein LOC107404608 [Ziziphus jujuba]	[more]

Annotated Terms

The following terms have been associated with this gene:

Vocabulary: **INTERPRO**
Term	Definition

GO Annotation

GO Assignments

This gene is annotated with the following GO terms.

Category	Term Accession	Term Name
biological_process	GO:0000023	maltose metabolic process
biological_process	GO:0006098	pentose-phosphate shunt
biological_process	GO:0019252	starch biosynthetic process
cellular_component	GO:0005575	cellular_component
molecular_function	GO:0003674	molecular_function

Relationships

The following mRNA feature(s) are a part of this gene:


Feature Name	Unique Name	Type
CmaCh04G006120.1	CmaCh04G006120.1	mRNA

InterPro

Analysis Name: InterPro Annotations of Cucurbita maxima
Date Performed: 2017-05-20


IPR Term	IPR Description	Source	Source Term	Source Description	Alignment
None	No IPR available	PANTHER	PTHR37225	FAMILY NOT NAMED	coord: 1..69 score: 3.3
None	No IPR available	PANTHER	PTHR37225:SF1	SUBFAMILY NOT NAMED	coord: 1..69 score: 3.3

Synteny

The following gene(s) are orthologous to this gene:


Gene	Orthologue	Organism	Block
CmaCh04G006120	Cla005440	Watermelon (97103) v1	cmawmB692
CmaCh04G006120	Csa4G056810	Cucumber (Chinese Long) v2	cmacuB708
CmaCh04G006120	MELO3C016236	Melon (DHL92) v3.5.1	cmameB695
CmaCh04G006120	ClCG07G010920	Watermelon (Charleston Gray)	cmawcgB675
CmaCh04G006120	CSPI04G07120	Wild cucumber (PI 183967)	cmacpiB714
CmaCh04G006120	CmoCh04G006600	Cucurbita moschata (Rifu)	cmacmoB728
CmaCh04G006120	Cp4.1LG01g01140	Cucurbita pepo (Zucchini)	cmacpeB720
CmaCh04G006120	MELO3C016236.2	Melon (DHL92) v3.6.1	cmamedB783
CmaCh04G006120	CsaV3_4G007340	Cucumber (Chinese Long) v3	cmacucB0841
CmaCh04G006120	Cla97C07G137650	Watermelon (97103) v2	cmawmbB782
CmaCh04G006120	Bhi01G002378	Wax gourd	cmawgoB0847

The following gene(s) are paralogous to this gene:

None

The following block(s) are covering this gene:


Gene	Organism	Block
CmaCh04G006120	Cucurbita maxima (Rimu)	cmacmaB353
CmaCh04G006120	Cucumber (Gy14) v1	cgycmaB0512
CmaCh04G006120	Cucurbita moschata (Rifu)	cmacmoB703
CmaCh04G006120	Cucurbita pepo (Zucchini)	cmacpeB717
CmaCh04G006120	Bottle gourd (USVL1VR-Ls)	cmalsiB695
CmaCh04G006120	Cucumber (Gy14) v2	cgybcmaB541
CmaCh04G006120	Silver-seed gourd	carcmaB0055
CmaCh04G006120	Silver-seed gourd	carcmaB0927