Cp4.1LG01g01140 (gene) Cucurbita pepo (Zucchini)

Overview
NameCp4.1LG01g01140
Typegene
OrganismCucurbita pepo (Cucurbita pepo (Zucchini))
Description3-isopropylmalate dehydratase large subunit
LocationCp4.1LG01 : 3193775 .. 3195369 (-)
Genome Viewer
Sequences
The following sequences are available for this feature:

Gene sequence (with intron)

Legend: five_prime_UTRCDSthree_prime_UTR
Hold the cursor over a type above to highlight its positions in the sequence below.
ATTAAAACCTTATCTAAAATCTCCAAAGGGCAAAGGGCAAATACGACTGAACTCCACAGAAACTTGAAAGCGAAAATGGATGGATTGCAGCAATTGGGGGTTCCATTGATGGGCATTGTTGCAGCGGCAGCCATTACCTTCTACGCCGTAAGCTTTTCTGAGATTCGAGAGGTATCCTTCTTTCTCCATTTTCTTTTATTTTGAGATCATGGATTTGTTGTCGCTGTTCGTTCTCTGTTTGTGATTATTATGGAAAATTAATGGTTTTAAATCTGGAGGAATGTGAAGAAATCATTCAGAGATTTGGATGAATCTGAGGATGAGAATCCAGGGTTTAAGATGACTGCAAGTTCGAGAGAGAGGCGAGCGAGAAGGAAGGCTGAAAAGGAAGCCAAACGATGAGAATTTCTCTCTTACTTCTCACTGTTCTTCATTTTCTTTAAGCTTTCATCATTCCTTGTTTTGGTGCCTTGGCTGTATATTTTAAGTTATACATAGTGGTGAGTTCTCTAAGTGAACAAACATTGGAGATATTCCATCCAATCTCGAATCTCTCAGGCCAAAACTAATGGATCCGTTAGGAAGAGATTTTCACACCCTTATAAAGAATGTTTCGTTCTCCTCTTCAATCGATGTGGGATCTCACAAAAACTTTCAACAAATACCTCACTTTCCCATGAAAATGTGTACCAGTGCTTCTGTTGAGGATTGAATTAGCTTCAACAGAATTATTATTATTACAAGAAATGTTTCAGAAAGGGAGCAAATTTAACTTCGAAACCCATATAAACTTGTTATTATTCAGAGATGATCTTAAGAATCTAGTAGTTGAGTGACATATCTCAACAGCATCCAAGGCTTTATTTCAACTTACAAATTGGTGTGGGACAAGATTACAGACTATCATTCATGTCTTCTGTACAAGACAAGCCGATCAACTTTTCACCACCATCAAAGCATTTGACCATCACGGGCAAGGGTTTCTTTGTTCCTTTAGAGCAAGCAAGACAGGATCTGGTTCCTTCAGCCCTTTCGCTGTAATTATTTGCAGCAGCTACCTCTGAGCCTTCAGCTCCTTCACTCTCTCTTCAGTAGCCTTTAGTGCATTCCCATAGATGCTGATTAACTGGAAACAAGAACAGTGACTTAAATTCTAACAAAAGTGTTTTGAGATTGAAAATCAATCCCAATAAGCTTTCAGGGATACCTCATCAACTTCTTGAGGAGAGATGATAAATGGTGGAGACATCATTATAGTATCCCCTGCAACACGTACAAGCATACCATTTTTCTGACATTCGGCTCCGAAGTATGCACCGACTCCTGTTTTCAAGGCAAATAACAAGCTTTCATCATAAGTATGGCCCCGGTAGATCAAAATCAAGGTCCACTAAATTGCTGGGTCTGTGATTTTGAGGTAAAGCTGATCCAAAATTATGATGATATTGTTGGGAGTCCCACCTCGACTAATTAAGAGTATGATCGTAGATTTATAAGTAAAGAACACATCTTCATTGGTATGAGGTCCTTTGAGGAAACCAAAAGTAAAGATATGAGAGCTACTGTGTTGTGTTAAGTTCTTCTAGTGTCAGATA

mRNA sequence

ATTAAAACCTTATCTAAAATCTCCAAAGGGCAAAGGGCAAATACGACTGAACTCCACAGAAACTTGAAAGCGAAAATGGATGGATTGCAGCAATTGGGGGTTCCATTGATGGGCATTGTTGCAGCGGCAGCCATTACCTTCTACGCCGTAAGCTTTTCTGAGATTCGAGAGAAATCATTCAGAGATTTGGATGAATCTGAGGATGAGAATCCAGGGTTTAAGATGACTGCAAGTTCGAGAGAGAGGCGAGCGAGAAGGAAGGCTGAAAAGGAAGCCAAACGATGAGAATTTCTCTCTTACTTCTCACTGTTCTTCATTTTCTTTAAGCTTTCATCATTCCTTGTTTTGGTGCCTTGGCTGTATATTTTAAGTTATACATAGTGGTGAGTTCTCTAAGTGAACAAACATTGGAGATATTCCATCCAATCTCGAATCTCTCAGGCCAAAACTAATGGATCCGTTAGGAAGAGATTTTCACACCCTTATAAAGAATGTTTCGTTCTCCTCTTCAATCGATGTGGGATCTCACAAAAACTTTCAACAAATACCTCACTTTCCCATGAAAATGTGTACCAGTGCTTCTGTTGAGGATTGAATTAGCTTCAACAGAATTATTATTATTACAAGAAATGTTTCAGAAAGGGAGCAAATTTAACTTCGAAACCCATATAAACTTGTTATTATTCAGAGATGATCTTAAGAATCTAGTAGTTGAGTGACATATCTCAACAGCATCCAAGGCTTTATTTCAACTTACAAATTGGTGTGGGACAAGATTACAGACTATCATTCATGTCTTCTGTACAAGACAAGCCGATCAACTTTTCACCACCATCAAAGCATTTGACCATCACGGGCAAGGGTTTCTTTGTTCCTTTAGAGCAAGCAAGACAGGATCTGGTTCCTTCAGCCCTTTCGCTGTAATTATTTGCAGCAGCTACCTCTGAGCCTTCAGCTCCTTCACTCTCTCTTCAGTAGCCTTTAGTGCATTCCCATAGATGCTGATTAACTGGAAACAAGAACAGTGACTTAAATTCTAACAAAAGTGTTTTGAGATTGAAAATCAATCCCAATAAGCTTTCAGGGATACCTCATCAACTTCTTGAGGAGAGATGATAAATGGTGGAGACATCATTATAGTATCCCCTGCAACACGTACAAGCATACCATTTTTCTGACATTCGGCTCCGAAGTATGCACCGACTCCTGTTTTCAAGGCAAATAACAAGCTTTCATCATAAGTATGGCCCCGGTAGATCAAAATCAAGGTCCACTAAATTGCTGGGTCTGTGATTTTGAGGTAAAGCTGATCCAAAATTATGATGATATTGTTGGGAGTCCCACCTCGACTAATTAAGAGTATGATCGTAGATTTATAAGTAAAGAACACATCTTCATTGGTATGAGGTCCTTTGAGGAAACCAAAAGTAAAGATATGAGAGCTACTGTGTTGTGTTAAGTTCTTCTAGTGTCAGATA

Coding sequence (CDS)

ATGGATGGATTGCAGCAATTGGGGGTTCCATTGATGGGCATTGTTGCAGCGGCAGCCATTACCTTCTACGCCGTAAGCTTTTCTGAGATTCGAGAGAAATCATTCAGAGATTTGGATGAATCTGAGGATGAGAATCCAGGGTTTAAGATGACTGCAAGTTCGAGAGAGAGGCGAGCGAGAAGGAAGGCTGAAAAGGAAGCCAAACGATGA

Protein sequence

MDGLQQLGVPLMGIVAAAAITFYAVSFSEIREKSFRDLDESEDENPGFKMTASSRERRARRKAEKEAKR
Homology
[Close]
BLAST of Cp4.1LG01g01140 vs. TrEMBL
Match: A0A0A0KVD4_CUCSA (Uncharacterized protein OS=Cucumis sativus GN=Csa_4G056810 PE=4 SV=1)

HSP 1 Score: 108.6 bits (270), Expect = 3.1e-21
Identity = 56/69 (81.16%), Postives = 66/69 (95.65%), Query Frame = 1 

Query: 1  MDGLQQLGVPLMGIVAAAAITFYAVSFSEIREKSFRDLDESEDENPGFKMTASSRERRAR 60
          MDGLQ++G+P++GIVAAAAITFYAVSFSE+REKSF+DLDE ED+  GF+MT+SSRERRAR
Sbjct: 1  MDGLQEMGIPMLGIVAAAAITFYAVSFSELREKSFKDLDELEDQKGGFQMTSSSRERRAR 60

Query: 61 RKAEKEAKR 70
          RKAEKEAKR
Sbjct: 61 RKAEKEAKR 69

[Close]
BLAST of Cp4.1LG01g01140 vs. TrEMBL
Match: W9R0M3_9ROSA (Uncharacterized protein OS=Morus notabilis GN=L484_009330 PE=4 SV=1)

HSP 1 Score: 99.8 bits (247), Expect = 1.4e-18
Identity = 51/68 (75.00%), Postives = 62/68 (91.18%), Query Frame = 1 

Query: 1  MDGLQQLGVPLMGIVAAAAITFYAVSFSEIREKSFRDLDESEDENPGFKMTASSRERRAR 60
          MDG  Q+G+P++GIVAAAA+TFYAVSF+EIREKSFRDLD+SE EN G+K + SSRERRAR
Sbjct: 1  MDGFNQIGLPILGIVAAAAVTFYAVSFAEIREKSFRDLDDSEAENEGYKPSPSSRERRAR 60

Query: 61 RKAEKEAK 69
          RKA+KE+K
Sbjct: 61 RKAQKESK 68

[Close]
BLAST of Cp4.1LG01g01140 vs. TrEMBL
Match: V4UTQ1_9ROSI (Uncharacterized protein OS=Citrus clementina GN=CICLE_v10013268mg PE=4 SV=1)

HSP 1 Score: 92.8 bits (229), Expect = 1.7e-16
Identity = 51/70 (72.86%), Postives = 64/70 (91.43%), Query Frame = 1 

Query: 1  MDGLQQLGVPLMGIVAAAAITFYAVSFSEIREKSFRDL-DESEDEN-PGFKMTASSRERR 60
          MDG+ Q+G+P++GIVAAAA+TFYAVSF+E+REKSFRDL DESEDEN  GF+ + SSRERR
Sbjct: 1  MDGMMQMGLPVLGIVAAAAVTFYAVSFAELREKSFRDLDDESEDENGGGFQKSLSSRERR 60

Query: 61 ARRKAEKEAK 69
          +RRKA+K+AK
Sbjct: 61 SRRKADKQAK 70

[Close]
BLAST of Cp4.1LG01g01140 vs. TrEMBL
Match: A0A067FLP3_CITSI (Uncharacterized protein OS=Citrus sinensis GN=CISIN_1g035171mg PE=4 SV=1)

HSP 1 Score: 92.8 bits (229), Expect = 1.7e-16
Identity = 51/70 (72.86%), Postives = 64/70 (91.43%), Query Frame = 1 

Query: 1  MDGLQQLGVPLMGIVAAAAITFYAVSFSEIREKSFRDL-DESEDEN-PGFKMTASSRERR 60
          MDG+ Q+G+P++GIVAAAA+TFYAVSF+E+REKSFRDL DESEDEN  GF+ + SSRERR
Sbjct: 1  MDGMMQMGLPVLGIVAAAAVTFYAVSFAELREKSFRDLDDESEDENGGGFQKSLSSRERR 60

Query: 61 ARRKAEKEAK 69
          +RRKA+K+AK
Sbjct: 61 SRRKADKQAK 70

[Close]
BLAST of Cp4.1LG01g01140 vs. TrEMBL
Match: D7TUC7_VITVI (Putative uncharacterized protein OS=Vitis vinifera GN=VIT_03s0017g01710 PE=4 SV=1)

HSP 1 Score: 87.4 bits (215), Expect = 7.3e-15
Identity = 48/68 (70.59%), Postives = 59/68 (86.76%), Query Frame = 1 

Query: 1  MDGLQQLGVPLMGIVAAAAITFYAVSFSEIREKSFRDLDESEDENPGFKMTASSRERRAR 60
          MD +Q +G+P++GIVA AAITFYAVSF+EIREKSFRDL++SE EN GFK + SSR+RRA 
Sbjct: 1  MDAMQ-VGLPILGIVAVAAITFYAVSFAEIREKSFRDLEDSESENVGFKSSMSSRKRRAS 60

Query: 61 RKAEKEAK 69
          RKAEK+ K
Sbjct: 61 RKAEKQDK 67

[Close]
BLAST of Cp4.1LG01g01140 vs. TAIR10
Match: AT3G22210.1 (AT3G22210.1 unknown protein)

HSP 1 Score: 72.4 bits (176), Expect = 1.2e-13
Identity = 37/66 (56.06%), Postives = 55/66 (83.33%), Query Frame = 1 

Query: 1  MDGLQQLGVPLMGIVAAAAITFYAVSFSEIREKSFRDLDESEDENPGFKMTASSRERRAR 60
          M+G+  + +P++GIVA + +TFYAVSF+EIREKSF+D+ +SE+E  GFK + SSRERR++
Sbjct: 1  MEGISHIALPVLGIVAVSVVTFYAVSFAEIREKSFKDVYDSENE-VGFKTSLSSRERRSK 60

Query: 61 RKAEKE 67
          R+A K+
Sbjct: 61 REANKK 65

[Close]
BLAST of Cp4.1LG01g01140 vs. NCBI nr
Match: gi|449460002|ref|XP_004147735.1| (PREDICTED: uncharacterized protein LOC101211279 [Cucumis sativus])

HSP 1 Score: 108.6 bits (270), Expect = 4.4e-21
Identity = 56/69 (81.16%), Postives = 66/69 (95.65%), Query Frame = 1 

Query: 1  MDGLQQLGVPLMGIVAAAAITFYAVSFSEIREKSFRDLDESEDENPGFKMTASSRERRAR 60
          MDGLQ++G+P++GIVAAAAITFYAVSFSE+REKSF+DLDE ED+  GF+MT+SSRERRAR
Sbjct: 1  MDGLQEMGIPMLGIVAAAAITFYAVSFSELREKSFKDLDELEDQKGGFQMTSSSRERRAR 60

Query: 61 RKAEKEAKR 70
          RKAEKEAKR
Sbjct: 61 RKAEKEAKR 69

[Close]
BLAST of Cp4.1LG01g01140 vs. NCBI nr
Match: gi|659101992|ref|XP_008451897.1| (PREDICTED: uncharacterized protein LOC103493052 [Cucumis melo])

HSP 1 Score: 108.6 bits (270), Expect = 4.4e-21
Identity = 56/69 (81.16%), Postives = 66/69 (95.65%), Query Frame = 1 

Query: 1  MDGLQQLGVPLMGIVAAAAITFYAVSFSEIREKSFRDLDESEDENPGFKMTASSRERRAR 60
          MDGLQ++G+P++GIVAAAAITFYAVSFSE+REKSF+DLDE ED+  GF+MT+SSRERRAR
Sbjct: 1  MDGLQEMGIPILGIVAAAAITFYAVSFSELREKSFKDLDELEDQKGGFQMTSSSRERRAR 60

Query: 61 RKAEKEAKR 70
          RKAEKEAKR
Sbjct: 61 RKAEKEAKR 69

[Close]
BLAST of Cp4.1LG01g01140 vs. NCBI nr
Match: gi|1009127823|ref|XP_015880899.1| (PREDICTED: uncharacterized protein LOC107416862 [Ziziphus jujuba])

HSP 1 Score: 99.8 bits (247), Expect = 2.0e-18
Identity = 51/68 (75.00%), Postives = 62/68 (91.18%), Query Frame = 1 

Query: 1  MDGLQQLGVPLMGIVAAAAITFYAVSFSEIREKSFRDLDESEDENPGFKMTASSRERRAR 60
          MDGLQQ+G+P++GIVAAAA+TFYAVSF+EIREKSFRD ++SE EN GF+   SSRE+RAR
Sbjct: 1  MDGLQQIGLPILGIVAAAAVTFYAVSFNEIREKSFRDFEDSETENEGFRRFPSSREKRAR 60

Query: 61 RKAEKEAK 69
          RKAEK+AK
Sbjct: 61 RKAEKDAK 68

[Close]
BLAST of Cp4.1LG01g01140 vs. NCBI nr
Match: gi|703086927|ref|XP_010093138.1| (hypothetical protein L484_009330 [Morus notabilis])

HSP 1 Score: 99.8 bits (247), Expect = 2.0e-18
Identity = 51/68 (75.00%), Postives = 62/68 (91.18%), Query Frame = 1 

Query: 1  MDGLQQLGVPLMGIVAAAAITFYAVSFSEIREKSFRDLDESEDENPGFKMTASSRERRAR 60
          MDG  Q+G+P++GIVAAAA+TFYAVSF+EIREKSFRDLD+SE EN G+K + SSRERRAR
Sbjct: 1  MDGFNQIGLPILGIVAAAAVTFYAVSFAEIREKSFRDLDDSEAENEGYKPSPSSRERRAR 60

Query: 61 RKAEKEAK 69
          RKA+KE+K
Sbjct: 61 RKAQKESK 68

[Close]
BLAST of Cp4.1LG01g01140 vs. NCBI nr
Match: gi|1009172053|ref|XP_015867063.1| (PREDICTED: uncharacterized protein LOC107404608 [Ziziphus jujuba])

HSP 1 Score: 98.6 bits (244), Expect = 4.5e-18
Identity = 50/68 (73.53%), Postives = 62/68 (91.18%), Query Frame = 1 

Query: 1  MDGLQQLGVPLMGIVAAAAITFYAVSFSEIREKSFRDLDESEDENPGFKMTASSRERRAR 60
          MDGLQQ+G+P++GIVAAAA+TFYAVSF+EIREKSFRD ++S+ EN GF+   SSRE+RAR
Sbjct: 1  MDGLQQIGLPILGIVAAAAVTFYAVSFNEIREKSFRDFEDSDTENEGFRRFPSSREKRAR 60

Query: 61 RKAEKEAK 69
          RKAEK+AK
Sbjct: 61 RKAEKDAK 68

The following BLAST results are available for this feature:
BLAST of Cp4.1LG01g01140 vs. Swiss-Prot
Match NameE-valueIdentityDescription
BLAST of Cp4.1LG01g01140 vs. TrEMBL
Match NameE-valueIdentityDescription
A0A0A0KVD4_CUCSA3.1e-2181.16Uncharacterized protein OS=Cucumis sativus GN=Csa_4G056810 PE=4 SV=1[more]
W9R0M3_9ROSA1.4e-1875.00Uncharacterized protein OS=Morus notabilis GN=L484_009330 PE=4 SV=1[more]
V4UTQ1_9ROSI1.7e-1672.86Uncharacterized protein OS=Citrus clementina GN=CICLE_v10013268mg PE=4 SV=1[more]
A0A067FLP3_CITSI1.7e-1672.86Uncharacterized protein OS=Citrus sinensis GN=CISIN_1g035171mg PE=4 SV=1[more]
D7TUC7_VITVI7.3e-1570.59Putative uncharacterized protein OS=Vitis vinifera GN=VIT_03s0017g01710 PE=4 SV=... [more]
BLAST of Cp4.1LG01g01140 vs. TAIR10
Match NameE-valueIdentityDescription
AT3G22210.11.2e-1356.06 unknown protein[more]
BLAST of Cp4.1LG01g01140 vs. NCBI nr
Match NameE-valueIdentityDescription
gi|449460002|ref|XP_004147735.1|4.4e-2181.16PREDICTED: uncharacterized protein LOC101211279 [Cucumis sativus][more]
gi|659101992|ref|XP_008451897.1|4.4e-2181.16PREDICTED: uncharacterized protein LOC103493052 [Cucumis melo][more]
gi|1009127823|ref|XP_015880899.1|2.0e-1875.00PREDICTED: uncharacterized protein LOC107416862 [Ziziphus jujuba][more]
gi|703086927|ref|XP_010093138.1|2.0e-1875.00hypothetical protein L484_009330 [Morus notabilis][more]
gi|1009172053|ref|XP_015867063.1|4.5e-1873.53PREDICTED: uncharacterized protein LOC107404608 [Ziziphus jujuba][more]
Annotated Terms
The following terms have been associated with this gene:
Vocabulary: INTERPRO
TermDefinition
GO Annotation
GO Assignments
This gene is annotated with the following GO terms.
Category Term Accession Term Name
biological_process GO:0000023 maltose metabolic process
biological_process GO:0006098 pentose-phosphate shunt
biological_process GO:0019252 starch biosynthetic process
cellular_component GO:0005575 cellular_component
molecular_function GO:0003674 molecular_function
Relationships

The following mRNA feature(s) are a part of this gene:

Feature NameUnique NameType
Cp4.1LG01g01140.1Cp4.1LG01g01140.1mRNA


InterPro
Analysis Name: InterPro Annotations of Cucurbita pepo
Date Performed: 2017-12-02
IPR TermIPR DescriptionSourceSource TermSource DescriptionAlignment
NoneNo IPR availableunknownCoilCoilcoord: 53..69
scor
NoneNo IPR availablePANTHERPTHR37225FAMILY NOT NAMEDcoord: 1..69
score: 1.1
NoneNo IPR availablePANTHERPTHR37225:SF1SUBFAMILY NOT NAMEDcoord: 1..69
score: 1.1

Synteny
The following gene(s) are orthologous to this gene:
GeneOrthologueOrganismBlock
Cp4.1LG01g01140CmaCh04G006120Cucurbita maxima (Rimu)cmacpeB720
Cp4.1LG01g01140CmoCh04G006600Cucurbita moschata (Rifu)cmocpeB673
Cp4.1LG01g01140Cla005440Watermelon (97103) v1cpewmB419
Cp4.1LG01g01140Csa4G056810Cucumber (Chinese Long) v2cpecuB399
Cp4.1LG01g01140MELO3C016236Melon (DHL92) v3.5.1cpemeB426
Cp4.1LG01g01140ClCG07G010920Watermelon (Charleston Gray)cpewcgB411
Cp4.1LG01g01140MELO3C016236.2Melon (DHL92) v3.6.1cpemedB488
Cp4.1LG01g01140Bhi01G002378Wax gourdcpewgoB0509
The following gene(s) are paralogous to this gene:

None

The following block(s) are covering this gene:
GeneOrganismBlock
Cp4.1LG01g01140Cucurbita pepo (Zucchini)cpecpeB236
Cp4.1LG01g01140Cucumber (Gy14) v1cgycpeB0494
Cp4.1LG01g01140Cucurbita maxima (Rimu)cmacpeB353
Cp4.1LG01g01140Cucurbita moschata (Rifu)cmocpeB315
Cp4.1LG01g01140Wild cucumber (PI 183967)cpecpiB396
Cp4.1LG01g01140Bottle gourd (USVL1VR-Ls)cpelsiB372
Cp4.1LG01g01140Melon (DHL92) v3.5.1cpemeB417
Cp4.1LG01g01140Cucumber (Gy14) v2cgybcpeB501
Cp4.1LG01g01140Silver-seed gourdcarcpeB0061
Cp4.1LG01g01140Silver-seed gourdcarcpeB0929
Cp4.1LG01g01140Cucumber (Chinese Long) v3cpecucB0496