MELO3C016236 (gene) Melon (DHL92) v3.5.1 | Cucurbit Genomics Database (CuGenDB)

Overview


Name	MELO3C016236
Type	gene
Organism	Cucumis melo (Melon (DHL92) v3.5.1)
Description	Coffea canephora DH200=94 genomic scaffold, scaffold_115
Location	chr7 : 21063459 .. 21066847 (-)

Genome Viewer

Gene Expression

Sequences

The following sequences are available for this feature:

Gene sequence (with intron)

Legend: CDS

Hold the cursor over a type above to highlight its positions in the sequence below.

GAAAGTTTTGTTTTCGGACTAAATTTAAAAGAGAAAAAAAAAAAAACGTTATCTACATTACGTCATCTTATCCGTCTTCACAAAAACTTAGCTCAAGTCACTGAAGCATCGACTCTCCAATACAGATTTGTTTAGAAAGAAGAAGGAAGTGGAAAATGGATGGATTGCAGGAAATGGGGATTCCAATTCTGGGGATTGTTGCAGCTGCCGCCATTACCTTCTACGCTGTAAGCTTTTCAGAGCTTCGAGAGGTACCTTTCTGTCTTCCTTTTTTTTCTTCCAATTTTCATACATTTTCTACTTCAAATTATTAACCAATTAATGGGTTCTTGAATTGGGGGGATGCTAAGAAATCATTCAAAGATTTGGATGAATTGGAGGATCAGAAAGGAGGGTTTCAGATGACTTCAAGTTCTAGAGAAAGGCGAGCAAGAAGGAAGGCTGAAAAGGAAGCTAAAAGATGATCATTTTGTAAGATAATTTGCCTCTTTTACAAGCCTTTTCAATATTTTTTTTTTTGTAATGTCAGTTAAGGATTCTAATAAGAACTTTTATTTCAAGAAATGTATCTGGAAAAAGAGCAACTCTGCTTTGAAATTTATATCAAATATCATATTAACAACATCCAAGATGCAGAAGGATTTATATGTTCCTTGAGAGTAGGCATGATTCTGTCCTTCA

mRNA sequence

GAAAGTTTTGTTTTCGGACTAAATTTAAAAGAGAAAAAAAAAAAAACGTTATCTACATTACGTCATCTTATCCGTCTTCACAAAAACTTAGCTCAAGTCACTGAAGCATCGACTCTCCAATACAGATTTGTTTAGAAAGAAGAAGGAAGTGGAAAATGGATGGATTGCAGGAAATGGGGATTCCAATTCTGGGGATTGTTGCAGCTGCCGCCATTACCTTCTACGCTGTAAGCTTTTCAGAGCTTCGAGAGAAATCATTCAAAGATTTGGATGAATTGGAGGATCAGAAAGGAGGGTTTCAGATGACTTCAAGTTCTAGAGAAAGGCGAGCAAGAAGGAAGGCTGAAAAGGAAGCTAAAAGATGATCATTTTGTAAGATAATTTGCCTCTTTTACAAGCCTTTTCAATATTTTTTTTTTTGTAATGTCAGTTAAGGATTCTAATAAGAACTTTTATTTCAAGAAATGTATCTGGAAAAAGAGCAACTCTGCTTTGAAATTTATATCAAATATCATATTAACAACATCCAAGATGCAGAAGGATTTATATGTTCCTTGAGAGTAGGCATGATTCTGTCCTTCA

Coding sequence (CDS)

ATGGATGGATTGCAGGAAATGGGGATTCCAATTCTGGGGATTGTTGCAGCTGCCGCCATTACCTTCTACGCTGTAAGCTTTTCAGAGCTTCGAGAGAAATCATTCAAAGATTTGGATGAATTGGAGGATCAGAAAGGAGGGTTTCAGATGACTTCAAGTTCTAGAGAAAGGCGAGCAAGAAGGAAGGCTGAAAAGGAAGCTAAAAGATGA

Homology

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BLAST of MELO3C016236 vs. TrEMBL
Match: A0A0A0KVD4_CUCSA (Uncharacterized protein OS=Cucumis sativus GN=Csa_4G056810 PE=4 SV=1)

HSP 1 Score: 133.3 bits (334), Expect = 1.2e-28
Identity = 68/69 (98.55%), Postives = 69/69 (100.00%), Query Frame = 1


Query: 1  MDGLQEMGIPILGIVAAAAITFYAVSFSELREKSFKDLDELEDQKGGFQMTSSSRERRAR 60
          MDGLQEMGIP+LGIVAAAAITFYAVSFSELREKSFKDLDELEDQKGGFQMTSSSRERRAR
Sbjct: 1  MDGLQEMGIPMLGIVAAAAITFYAVSFSELREKSFKDLDELEDQKGGFQMTSSSRERRAR 60

Query: 61 RKAEKEAKR 70
          RKAEKEAKR
Sbjct: 61 RKAEKEAKR 69

[Close]

BLAST of MELO3C016236 vs. TrEMBL
Match: A0A067FLP3_CITSI (Uncharacterized protein OS=Citrus sinensis GN=CISIN_1g035171mg PE=4 SV=1)

HSP 1 Score: 100.5 bits (249), Expect = 8.4e-19
Identity = 51/70 (72.86%), Postives = 63/70 (90.00%), Query Frame = 1


Query: 1  MDGLQEMGIPILGIVAAAAITFYAVSFSELREKSFKDL-DELEDQK-GGFQMTSSSRERR 60
          MDG+ +MG+P+LGIVAAAA+TFYAVSF+ELREKSF+DL DE ED+  GGFQ + SSRERR
Sbjct: 1  MDGMMQMGLPVLGIVAAAAVTFYAVSFAELREKSFRDLDDESEDENGGGFQKSLSSRERR 60

Query: 61 ARRKAEKEAK 69
          +RRKA+K+AK
Sbjct: 61 SRRKADKQAK 70

[Close]

BLAST of MELO3C016236 vs. TrEMBL
Match: V4UTQ1_9ROSI (Uncharacterized protein OS=Citrus clementina GN=CICLE_v10013268mg PE=4 SV=1)

HSP 1 Score: 100.5 bits (249), Expect = 8.4e-19
Identity = 51/70 (72.86%), Postives = 63/70 (90.00%), Query Frame = 1


Query: 1  MDGLQEMGIPILGIVAAAAITFYAVSFSELREKSFKDL-DELEDQK-GGFQMTSSSRERR 60
          MDG+ +MG+P+LGIVAAAA+TFYAVSF+ELREKSF+DL DE ED+  GGFQ + SSRERR
Sbjct: 1  MDGMMQMGLPVLGIVAAAAVTFYAVSFAELREKSFRDLDDESEDENGGGFQKSLSSRERR 60

Query: 61 ARRKAEKEAK 69
          +RRKA+K+AK
Sbjct: 61 SRRKADKQAK 70

[Close]

BLAST of MELO3C016236 vs. TrEMBL
Match: W9R0M3_9ROSA (Uncharacterized protein OS=Morus notabilis GN=L484_009330 PE=4 SV=1)

HSP 1 Score: 98.2 bits (243), Expect = 4.2e-18
Identity = 46/68 (67.65%), Postives = 60/68 (88.24%), Query Frame = 1


Query: 1  MDGLQEMGIPILGIVAAAAITFYAVSFSELREKSFKDLDELEDQKGGFQMTSSSRERRAR 60
          MDG  ++G+PILGIVAAAA+TFYAVSF+E+REKSF+DLD+ E +  G++ + SSRERRAR
Sbjct: 1  MDGFNQIGLPILGIVAAAAVTFYAVSFAEIREKSFRDLDDSEAENEGYKPSPSSRERRAR 60

Query: 61 RKAEKEAK 69
          RKA+KE+K
Sbjct: 61 RKAQKESK 68

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BLAST of MELO3C016236 vs. TrEMBL
Match: A0A067K2S9_JATCU (Uncharacterized protein OS=Jatropha curcas GN=JCGZ_16671 PE=4 SV=1)

HSP 1 Score: 93.6 bits (231), Expect = 1.0e-16
Identity = 51/69 (73.91%), Postives = 60/69 (86.96%), Query Frame = 1


Query: 3  GLQEMGIPILGIVAAAAITFYAVSFSELREKSFKDLDELEDQ--KGGFQMTSSSRERRAR 62
          GLQ M +PILGIVAAAA+TFYAVSFSEL EKSF+DLDE E++   GGF+ T SSRERRAR
Sbjct: 5  GLQ-MALPILGIVAAAAVTFYAVSFSELSEKSFRDLDESENEGGGGGFRPTLSSRERRAR 64

Query: 63 RKAEKEAKR 70
          RKAEK++K+
Sbjct: 65 RKAEKQSKK 72

[Close]

BLAST of MELO3C016236 vs. TAIR10
Match: AT3G22210.1 (AT3G22210.1 unknown protein)

HSP 1 Score: 75.5 bits (184), Expect = 1.5e-14
Identity = 35/66 (53.03%), Postives = 52/66 (78.79%), Query Frame = 1


Query: 1  MDGLQEMGIPILGIVAAAAITFYAVSFSELREKSFKDLDELEDQKGGFQMTSSSRERRAR 60
          M+G+  + +P+LGIVA + +TFYAVSF+E+REKSFKD+ + E++  GF+ + SSRERR++
Sbjct: 1  MEGISHIALPVLGIVAVSVVTFYAVSFAEIREKSFKDVYDSENEV-GFKTSLSSRERRSK 60

Query: 61 RKAEKE 67
          R+A K+
Sbjct: 61 REANKK 65

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BLAST of MELO3C016236 vs. NCBI nr
Match: gi|659101992|ref|XP_008451897.1| (PREDICTED: uncharacterized protein LOC103493052 [Cucumis melo])

HSP 1 Score: 134.4 bits (337), Expect = 7.6e-29
Identity = 69/69 (100.00%), Postives = 69/69 (100.00%), Query Frame = 1


Query: 1  MDGLQEMGIPILGIVAAAAITFYAVSFSELREKSFKDLDELEDQKGGFQMTSSSRERRAR 60
          MDGLQEMGIPILGIVAAAAITFYAVSFSELREKSFKDLDELEDQKGGFQMTSSSRERRAR
Sbjct: 1  MDGLQEMGIPILGIVAAAAITFYAVSFSELREKSFKDLDELEDQKGGFQMTSSSRERRAR 60

Query: 61 RKAEKEAKR 70
          RKAEKEAKR
Sbjct: 61 RKAEKEAKR 69

[Close]

BLAST of MELO3C016236 vs. NCBI nr
Match: gi|449460002|ref|XP_004147735.1| (PREDICTED: uncharacterized protein LOC101211279 [Cucumis sativus])

HSP 1 Score: 133.3 bits (334), Expect = 1.7e-28
Identity = 68/69 (98.55%), Postives = 69/69 (100.00%), Query Frame = 1


Query: 1  MDGLQEMGIPILGIVAAAAITFYAVSFSELREKSFKDLDELEDQKGGFQMTSSSRERRAR 60
          MDGLQEMGIP+LGIVAAAAITFYAVSFSELREKSFKDLDELEDQKGGFQMTSSSRERRAR
Sbjct: 1  MDGLQEMGIPMLGIVAAAAITFYAVSFSELREKSFKDLDELEDQKGGFQMTSSSRERRAR 60

Query: 61 RKAEKEAKR 70
          RKAEKEAKR
Sbjct: 61 RKAEKEAKR 69

[Close]

BLAST of MELO3C016236 vs. NCBI nr
Match: gi|567874359|ref|XP_006429769.1| (hypothetical protein CICLE_v10013268mg [Citrus clementina])

HSP 1 Score: 100.5 bits (249), Expect = 1.2e-18
Identity = 51/70 (72.86%), Postives = 63/70 (90.00%), Query Frame = 1


Query: 1  MDGLQEMGIPILGIVAAAAITFYAVSFSELREKSFKDL-DELEDQK-GGFQMTSSSRERR 60
          MDG+ +MG+P+LGIVAAAA+TFYAVSF+ELREKSF+DL DE ED+  GGFQ + SSRERR
Sbjct: 1  MDGMMQMGLPVLGIVAAAAVTFYAVSFAELREKSFRDLDDESEDENGGGFQKSLSSRERR 60

Query: 61 ARRKAEKEAK 69
          +RRKA+K+AK
Sbjct: 61 SRRKADKQAK 70

[Close]

BLAST of MELO3C016236 vs. NCBI nr
Match: gi|1009127823|ref|XP_015880899.1| (PREDICTED: uncharacterized protein LOC107416862 [Ziziphus jujuba])

HSP 1 Score: 99.4 bits (246), Expect = 2.7e-18
Identity = 47/68 (69.12%), Postives = 60/68 (88.24%), Query Frame = 1


Query: 1  MDGLQEMGIPILGIVAAAAITFYAVSFSELREKSFKDLDELEDQKGGFQMTSSSRERRAR 60
          MDGLQ++G+PILGIVAAAA+TFYAVSF+E+REKSF+D ++ E +  GF+   SSRE+RAR
Sbjct: 1  MDGLQQIGLPILGIVAAAAVTFYAVSFNEIREKSFRDFEDSETENEGFRRFPSSREKRAR 60

Query: 61 RKAEKEAK 69
          RKAEK+AK
Sbjct: 61 RKAEKDAK 68

[Close]

BLAST of MELO3C016236 vs. NCBI nr
Match: gi|657973102|ref|XP_008378347.1| (PREDICTED: uncharacterized protein LOC103441441 [Malus domestica])

HSP 1 Score: 98.2 bits (243), Expect = 6.0e-18
Identity = 48/70 (68.57%), Postives = 62/70 (88.57%), Query Frame = 1


Query: 1  MDGLQEMGIPILGIVAAAAITFYAVSFSELREKSFKDLDELE-DQKGGFQMTSSSRERRA 60
          MDG+Q++G+P+LGIVAAAA+TFYAVSF EL EKSF+DLDE E  + GG++ ++SSR +RA
Sbjct: 1  MDGIQQLGLPVLGIVAAAAVTFYAVSFLELSEKSFRDLDEKEYGESGGYKPSASSRVKRA 60

Query: 61 RRKAEKEAKR 70
          RRKAEK+AKR
Sbjct: 61 RRKAEKQAKR 70

The following BLAST results are available for this feature:

BLAST of MELO3C016236 vs. TrEMBL


Match Name	E-value	Identity	Description
A0A0A0KVD4_CUCSA	1.2e-28	98.55	Uncharacterized protein OS=Cucumis sativus GN=Csa_4G056810 PE=4 SV=1	[more]
A0A067FLP3_CITSI	8.4e-19	72.86	Uncharacterized protein OS=Citrus sinensis GN=CISIN_1g035171mg PE=4 SV=1	[more]
V4UTQ1_9ROSI	8.4e-19	72.86	Uncharacterized protein OS=Citrus clementina GN=CICLE_v10013268mg PE=4 SV=1	[more]
W9R0M3_9ROSA	4.2e-18	67.65	Uncharacterized protein OS=Morus notabilis GN=L484_009330 PE=4 SV=1	[more]
A0A067K2S9_JATCU	1.0e-16	73.91	Uncharacterized protein OS=Jatropha curcas GN=JCGZ_16671 PE=4 SV=1	[more]

BLAST of MELO3C016236 vs. TAIR10


Match Name	E-value	Identity	Description
AT3G22210.1	1.5e-14	53.03	unknown protein	[more]

BLAST of MELO3C016236 vs. NCBI nr


Match Name	E-value	Identity	Description
gi\|659101992\|ref\|XP_008451897.1\|	7.6e-29	100.00	PREDICTED: uncharacterized protein LOC103493052 [Cucumis melo]	[more]
gi\|449460002\|ref\|XP_004147735.1\|	1.7e-28	98.55	PREDICTED: uncharacterized protein LOC101211279 [Cucumis sativus]	[more]
gi\|567874359\|ref\|XP_006429769.1\|	1.2e-18	72.86	hypothetical protein CICLE_v10013268mg [Citrus clementina]	[more]
gi\|1009127823\|ref\|XP_015880899.1\|	2.7e-18	69.12	PREDICTED: uncharacterized protein LOC107416862 [Ziziphus jujuba]	[more]
gi\|657973102\|ref\|XP_008378347.1\|	6.0e-18	68.57	PREDICTED: uncharacterized protein LOC103441441 [Malus domestica]	[more]

Annotated Terms

The following terms have been associated with this gene:

Vocabulary: **INTERPRO**
Term	Definition

GO Annotation

GO Assignments

This gene is annotated with the following GO terms.

Category	Term Accession	Term Name
biological_process	GO:0000023	maltose metabolic process
biological_process	GO:0006098	pentose-phosphate shunt
biological_process	GO:0019252	starch biosynthetic process
biological_process	GO:0008150	biological_process
cellular_component	GO:0005575	cellular_component
molecular_function	GO:0003674	molecular_function

Relationships

The following mRNA feature(s) are a part of this gene:


Feature Name	Unique Name	Type
MELO3C016236T3	MELO3C016236T3	mRNA
MELO3C016236T2	MELO3C016236T2	mRNA
MELO3C016236T1	MELO3C016236T1	mRNA

Synteny

The following gene(s) are orthologous to this gene:


Gene	Orthologue	Organism	Block
MELO3C016236	Csa4G056810	Cucumber (Chinese Long) v2	cumeB300
MELO3C016236	Bhi01G002378	Wax gourd	mewgoB570
MELO3C016236	CSPI04G07120	Wild cucumber (PI 183967)	cpimeB294
MELO3C016236	Cucsa.180060	Cucumber (Gy14) v1	cgymeB324
MELO3C016236	CmaCh04G006120	Cucurbita maxima (Rimu)	cmameB695
MELO3C016236	CmoCh04G006600	Cucurbita moschata (Rifu)	cmomeB687
MELO3C016236	Cp4.1LG01g01140	Cucurbita pepo (Zucchini)	cpemeB426
MELO3C016236	CsaV3_4G007340	Cucumber (Chinese Long) v3	cucmeB300

The following gene(s) are paralogous to this gene:

None

The following block(s) are covering this gene:


Gene	Organism	Block
MELO3C016236	Cucurbita maxima (Rimu)	cmameB305
MELO3C016236	Cucurbita maxima (Rimu)	cmameB301
MELO3C016236	Cucurbita moschata (Rifu)	cmomeB294
MELO3C016236	Cucurbita moschata (Rifu)	cmomeB300
MELO3C016236	Watermelon (Charleston Gray)	mewcgB485
MELO3C016236	Watermelon (Charleston Gray)	mewcgB495
MELO3C016236	Watermelon (97103) v1	mewmB508
MELO3C016236	Watermelon (97103) v1	mewmB517
MELO3C016236	Cucurbita pepo (Zucchini)	cpemeB196
MELO3C016236	Cucurbita pepo (Zucchini)	cpemeB203
MELO3C016236	Cucurbita pepo (Zucchini)	cpemeB417
MELO3C016236	Bottle gourd (USVL1VR-Ls)	lsimeB449
MELO3C016236	Bottle gourd (USVL1VR-Ls)	lsimeB455
MELO3C016236	Cucumber (Gy14) v2	cgybmeB255
MELO3C016236	Silver-seed gourd	carmeB0042
MELO3C016236	Silver-seed gourd	carmeB0652
MELO3C016236	Watermelon (97103) v2	mewmbB491
MELO3C016236	Watermelon (97103) v2	mewmbB500