Csa4G056810 (gene) Cucumber (Chinese Long) v2 | Cucurbit Genomics Database (CuGenDB)

Overview


Name	Csa4G056810
Type	gene
Organism	Cucumis. sativus (Cucumber (Chinese Long) v2)
Description	Fortune-1
Location	Chr4 : 4907811 .. 4908734 (-)

Genome Viewer

Gene Expression

Sequences

The following sequences are available for this feature:

Gene sequence (with intron)

Legend: five_prime_UTRCDSthree_prime_UTR

Hold the cursor over a type above to highlight its positions in the sequence below.

TTATTTCAAATAAACAAAAAGAAGACGTTATCTTGATTACGTCATCTTATCCGTCTTCACAAAAGCATAGCTTCAAGTCACCGAAGCATCCACTCTCCAGTACAGATTTAGTTTAGAAGGAAGAAGGAAGGGGAAAATGGATGGATTGCAGGAAATGGGGATTCCAATGCTTGGGATTGTTGCTGCTGCCGCCATTACCTTCTACGCTGTAAGCTTTTCAGAGCTTCGAGAGGTACCTTTCTGTCTTCCTTCTTTTTTTCCAATTTTTACACATTTTTTTACTTCAAATTATAAACCAATTAATGGGTTCTTAAATTGGGGGATCGCTAAGAAATCATTCAAAGATTTGGATGAATTGGAGGATCAGAAAGGAGGGTTTCAGATGACTTCAAGTTCTAGAGAAAGGCGAGCAAGAAGGAAGGCTGAAAAGGAAGCTAAAAGATGATCATTTTGTAAGATAATTTGCCTCTTTTACAAGTCTTTTCATTTCTTTTTTTGTAATGTCTGTTAAAGATTCTAATAGGAGCTTTTATTTCAAGAAGGCTTTGAAATCTATATCAAACATCATATTCACAACATCCAAGATGCAGAAGGATTTATACGTTCCTTGAGTGTAGACATGATTCTGTTCCTTCAAGCCATTCATTGTAACTATTTGCCGCTTCTTTTTCTGAGCCTTCAATTCCTTCACTCTCTTCAATGGCTTTCAGTGCTTTTTCGTATTTGCTCATTAACTGGAATCAAGAAACGGCGGATCAAATTCTTAGAAAACATGTAGAGAATTGATACTCATTACTCAATCATGTTATTATTAGTCTTTTTCAGATACCCCATCAACTTCTTGAGGAGAGATCATAAATGATGGAGACAGCGTTATAGTATCCCCTCCAGTTCTTATTATCAAACCATTTTTTCGACATTCAG

mRNA sequence

ATGGATGGATTGCAGGAAATGGGGATTCCAATGCTTGGGATTGTTGCTGCTGCCGCCATTACCTTCTACGCTGTAAGCTTTTCAGAGCTTCGAGAGAAATCATTCAAAGATTTGGATGAATTGGAGGATCAGAAAGGAGGGTTTCAGATGACTTCAAGTTCTAGAGAAAGGCGAGCAAGAAGGAAGGCTGAAAAGGAAGCTAAAAGATGA

Coding sequence (CDS)

ATGGATGGATTGCAGGAAATGGGGATTCCAATGCTTGGGATTGTTGCTGCTGCCGCCATTACCTTCTACGCTGTAAGCTTTTCAGAGCTTCGAGAGAAATCATTCAAAGATTTGGATGAATTGGAGGATCAGAAAGGAGGGTTTCAGATGACTTCAAGTTCTAGAGAAAGGCGAGCAAGAAGGAAGGCTGAAAAGGAAGCTAAAAGATGA

Protein sequence

MDGLQEMGIPMLGIVAAAAITFYAVSFSELREKSFKDLDELEDQKGGFQMTSSSRERRARRKAEKEAKR*

Homology

[Close]

BLAST of Csa4G056810 vs. TrEMBL
Match: A0A0A0KVD4_CUCSA (Uncharacterized protein OS=Cucumis sativus GN=Csa_4G056810 PE=4 SV=1)

HSP 1 Score: 134.8 bits (338), Expect = 4.0e-29
Identity = 69/69 (100.00%), Postives = 69/69 (100.00%), Query Frame = 1


Query: 1  MDGLQEMGIPMLGIVAAAAITFYAVSFSELREKSFKDLDELEDQKGGFQMTSSSRERRAR 60
          MDGLQEMGIPMLGIVAAAAITFYAVSFSELREKSFKDLDELEDQKGGFQMTSSSRERRAR
Sbjct: 1  MDGLQEMGIPMLGIVAAAAITFYAVSFSELREKSFKDLDELEDQKGGFQMTSSSRERRAR 60

Query: 61 RKAEKEAKR 70
          RKAEKEAKR
Sbjct: 61 RKAEKEAKR 69

[Close]

BLAST of Csa4G056810 vs. TrEMBL
Match: A0A067FLP3_CITSI (Uncharacterized protein OS=Citrus sinensis GN=CISIN_1g035171mg PE=4 SV=1)

HSP 1 Score: 99.8 bits (247), Expect = 1.4e-18
Identity = 51/70 (72.86%), Postives = 63/70 (90.00%), Query Frame = 1


Query: 1  MDGLQEMGIPMLGIVAAAAITFYAVSFSELREKSFKDL-DELEDQK-GGFQMTSSSRERR 60
          MDG+ +MG+P+LGIVAAAA+TFYAVSF+ELREKSF+DL DE ED+  GGFQ + SSRERR
Sbjct: 1  MDGMMQMGLPVLGIVAAAAVTFYAVSFAELREKSFRDLDDESEDENGGGFQKSLSSRERR 60

Query: 61 ARRKAEKEAK 69
          +RRKA+K+AK
Sbjct: 61 SRRKADKQAK 70

[Close]

BLAST of Csa4G056810 vs. TrEMBL
Match: V4UTQ1_9ROSI (Uncharacterized protein OS=Citrus clementina GN=CICLE_v10013268mg PE=4 SV=1)

HSP 1 Score: 99.8 bits (247), Expect = 1.4e-18
Identity = 51/70 (72.86%), Postives = 63/70 (90.00%), Query Frame = 1


Query: 1  MDGLQEMGIPMLGIVAAAAITFYAVSFSELREKSFKDL-DELEDQK-GGFQMTSSSRERR 60
          MDG+ +MG+P+LGIVAAAA+TFYAVSF+ELREKSF+DL DE ED+  GGFQ + SSRERR
Sbjct: 1  MDGMMQMGLPVLGIVAAAAVTFYAVSFAELREKSFRDLDDESEDENGGGFQKSLSSRERR 60

Query: 61 ARRKAEKEAK 69
          +RRKA+K+AK
Sbjct: 61 SRRKADKQAK 70

[Close]

BLAST of Csa4G056810 vs. TrEMBL
Match: W9R0M3_9ROSA (Uncharacterized protein OS=Morus notabilis GN=L484_009330 PE=4 SV=1)

HSP 1 Score: 97.1 bits (240), Expect = 9.3e-18
Identity = 45/68 (66.18%), Postives = 60/68 (88.24%), Query Frame = 1


Query: 1  MDGLQEMGIPMLGIVAAAAITFYAVSFSELREKSFKDLDELEDQKGGFQMTSSSRERRAR 60
          MDG  ++G+P+LGIVAAAA+TFYAVSF+E+REKSF+DLD+ E +  G++ + SSRERRAR
Sbjct: 1  MDGFNQIGLPILGIVAAAAVTFYAVSFAEIREKSFRDLDDSEAENEGYKPSPSSRERRAR 60

Query: 61 RKAEKEAK 69
          RKA+KE+K
Sbjct: 61 RKAQKESK 68

[Close]

BLAST of Csa4G056810 vs. TrEMBL
Match: A0A067K2S9_JATCU (Uncharacterized protein OS=Jatropha curcas GN=JCGZ_16671 PE=4 SV=1)

HSP 1 Score: 92.4 bits (228), Expect = 2.3e-16
Identity = 50/69 (72.46%), Postives = 60/69 (86.96%), Query Frame = 1


Query: 3  GLQEMGIPMLGIVAAAAITFYAVSFSELREKSFKDLDELEDQ--KGGFQMTSSSRERRAR 62
          GLQ M +P+LGIVAAAA+TFYAVSFSEL EKSF+DLDE E++   GGF+ T SSRERRAR
Sbjct: 5  GLQ-MALPILGIVAAAAVTFYAVSFSELSEKSFRDLDESENEGGGGGFRPTLSSRERRAR 64

Query: 63 RKAEKEAKR 70
          RKAEK++K+
Sbjct: 65 RKAEKQSKK 72

[Close]

BLAST of Csa4G056810 vs. TAIR10
Match: AT3G22210.1 (AT3G22210.1 unknown protein)

HSP 1 Score: 74.7 bits (182), Expect = 2.5e-14
Identity = 35/66 (53.03%), Postives = 52/66 (78.79%), Query Frame = 1


Query: 1  MDGLQEMGIPMLGIVAAAAITFYAVSFSELREKSFKDLDELEDQKGGFQMTSSSRERRAR 60
          M+G+  + +P+LGIVA + +TFYAVSF+E+REKSFKD+ + E++  GF+ + SSRERR++
Sbjct: 1  MEGISHIALPVLGIVAVSVVTFYAVSFAEIREKSFKDVYDSENEV-GFKTSLSSRERRSK 60

Query: 61 RKAEKE 67
          R+A K+
Sbjct: 61 REANKK 65

[Close]

BLAST of Csa4G056810 vs. NCBI nr
Match: gi|449460002|ref|XP_004147735.1| (PREDICTED: uncharacterized protein LOC101211279 [Cucumis sativus])

HSP 1 Score: 134.8 bits (338), Expect = 5.8e-29
Identity = 69/69 (100.00%), Postives = 69/69 (100.00%), Query Frame = 1


Query: 1  MDGLQEMGIPMLGIVAAAAITFYAVSFSELREKSFKDLDELEDQKGGFQMTSSSRERRAR 60
          MDGLQEMGIPMLGIVAAAAITFYAVSFSELREKSFKDLDELEDQKGGFQMTSSSRERRAR
Sbjct: 1  MDGLQEMGIPMLGIVAAAAITFYAVSFSELREKSFKDLDELEDQKGGFQMTSSSRERRAR 60

Query: 61 RKAEKEAKR 70
          RKAEKEAKR
Sbjct: 61 RKAEKEAKR 69

[Close]

BLAST of Csa4G056810 vs. NCBI nr
Match: gi|659101992|ref|XP_008451897.1| (PREDICTED: uncharacterized protein LOC103493052 [Cucumis melo])

HSP 1 Score: 133.3 bits (334), Expect = 1.7e-28
Identity = 68/69 (98.55%), Postives = 69/69 (100.00%), Query Frame = 1


Query: 1  MDGLQEMGIPMLGIVAAAAITFYAVSFSELREKSFKDLDELEDQKGGFQMTSSSRERRAR 60
          MDGLQEMGIP+LGIVAAAAITFYAVSFSELREKSFKDLDELEDQKGGFQMTSSSRERRAR
Sbjct: 1  MDGLQEMGIPILGIVAAAAITFYAVSFSELREKSFKDLDELEDQKGGFQMTSSSRERRAR 60

Query: 61 RKAEKEAKR 70
          RKAEKEAKR
Sbjct: 61 RKAEKEAKR 69

[Close]

BLAST of Csa4G056810 vs. NCBI nr
Match: gi|567874359|ref|XP_006429769.1| (hypothetical protein CICLE_v10013268mg [Citrus clementina])

HSP 1 Score: 99.8 bits (247), Expect = 2.1e-18
Identity = 51/70 (72.86%), Postives = 63/70 (90.00%), Query Frame = 1


Query: 1  MDGLQEMGIPMLGIVAAAAITFYAVSFSELREKSFKDL-DELEDQK-GGFQMTSSSRERR 60
          MDG+ +MG+P+LGIVAAAA+TFYAVSF+ELREKSF+DL DE ED+  GGFQ + SSRERR
Sbjct: 1  MDGMMQMGLPVLGIVAAAAVTFYAVSFAELREKSFRDLDDESEDENGGGFQKSLSSRERR 60

Query: 61 ARRKAEKEAK 69
          +RRKA+K+AK
Sbjct: 61 SRRKADKQAK 70

[Close]

BLAST of Csa4G056810 vs. NCBI nr
Match: gi|1009127823|ref|XP_015880899.1| (PREDICTED: uncharacterized protein LOC107416862 [Ziziphus jujuba])

HSP 1 Score: 98.2 bits (243), Expect = 6.0e-18
Identity = 46/68 (67.65%), Postives = 60/68 (88.24%), Query Frame = 1


Query: 1  MDGLQEMGIPMLGIVAAAAITFYAVSFSELREKSFKDLDELEDQKGGFQMTSSSRERRAR 60
          MDGLQ++G+P+LGIVAAAA+TFYAVSF+E+REKSF+D ++ E +  GF+   SSRE+RAR
Sbjct: 1  MDGLQQIGLPILGIVAAAAVTFYAVSFNEIREKSFRDFEDSETENEGFRRFPSSREKRAR 60

Query: 61 RKAEKEAK 69
          RKAEK+AK
Sbjct: 61 RKAEKDAK 68

[Close]

BLAST of Csa4G056810 vs. NCBI nr
Match: gi|657973102|ref|XP_008378347.1| (PREDICTED: uncharacterized protein LOC103441441 [Malus domestica])

HSP 1 Score: 97.4 bits (241), Expect = 1.0e-17
Identity = 48/70 (68.57%), Postives = 62/70 (88.57%), Query Frame = 1


Query: 1  MDGLQEMGIPMLGIVAAAAITFYAVSFSELREKSFKDLDELE-DQKGGFQMTSSSRERRA 60
          MDG+Q++G+P+LGIVAAAA+TFYAVSF EL EKSF+DLDE E  + GG++ ++SSR +RA
Sbjct: 1  MDGIQQLGLPVLGIVAAAAVTFYAVSFLELSEKSFRDLDEKEYGESGGYKPSASSRVKRA 60

Query: 61 RRKAEKEAKR 70
          RRKAEK+AKR
Sbjct: 61 RRKAEKQAKR 70

The following BLAST results are available for this feature:

BLAST of Csa4G056810 vs. TrEMBL


Match Name	E-value	Identity	Description
A0A0A0KVD4_CUCSA	4.0e-29	100.00	Uncharacterized protein OS=Cucumis sativus GN=Csa_4G056810 PE=4 SV=1	[more]
A0A067FLP3_CITSI	1.4e-18	72.86	Uncharacterized protein OS=Citrus sinensis GN=CISIN_1g035171mg PE=4 SV=1	[more]
V4UTQ1_9ROSI	1.4e-18	72.86	Uncharacterized protein OS=Citrus clementina GN=CICLE_v10013268mg PE=4 SV=1	[more]
W9R0M3_9ROSA	9.3e-18	66.18	Uncharacterized protein OS=Morus notabilis GN=L484_009330 PE=4 SV=1	[more]
A0A067K2S9_JATCU	2.3e-16	72.46	Uncharacterized protein OS=Jatropha curcas GN=JCGZ_16671 PE=4 SV=1	[more]

BLAST of Csa4G056810 vs. TAIR10


Match Name	E-value	Identity	Description
AT3G22210.1	2.5e-14	53.03	unknown protein	[more]

BLAST of Csa4G056810 vs. NCBI nr


Match Name	E-value	Identity	Description
gi\|449460002\|ref\|XP_004147735.1\|	5.8e-29	100.00	PREDICTED: uncharacterized protein LOC101211279 [Cucumis sativus]	[more]
gi\|659101992\|ref\|XP_008451897.1\|	1.7e-28	98.55	PREDICTED: uncharacterized protein LOC103493052 [Cucumis melo]	[more]
gi\|567874359\|ref\|XP_006429769.1\|	2.1e-18	72.86	hypothetical protein CICLE_v10013268mg [Citrus clementina]	[more]
gi\|1009127823\|ref\|XP_015880899.1\|	6.0e-18	67.65	PREDICTED: uncharacterized protein LOC107416862 [Ziziphus jujuba]	[more]
gi\|657973102\|ref\|XP_008378347.1\|	1.0e-17	68.57	PREDICTED: uncharacterized protein LOC103441441 [Malus domestica]	[more]

Annotated Terms

The following terms have been associated with this gene:

Vocabulary: **INTERPRO**
Term	Definition

GO Annotation

GO Assignments

This gene is annotated with the following GO terms.

Category	Term Accession	Term Name
biological_process	GO:0000023	maltose metabolic process
biological_process	GO:0006098	pentose-phosphate shunt
biological_process	GO:0019252	starch biosynthetic process
biological_process	GO:0008150	biological_process
cellular_component	GO:0005575	cellular_component
molecular_function	GO:0003674	molecular_function

Unigene

This gene is associated with the following unigenes:


Unigene Name	Analysis Name	Sequence type in Unigene
CU087289	cucumber EST collection version 3.0	transcribed_cluster
CU109811	cucumber EST collection version 3.0	transcribed_cluster

Relationships

The following mRNA feature(s) are a part of this gene:


Feature Name	Unique Name	Type
Csa4G056810.1	Csa4G056810.1	mRNA

The following transcribed_cluster feature(s) are associated with this gene:


Feature Name	Unique Name	Type
CU087289	CU087289	transcribed_cluster
CU109811	CU109811	transcribed_cluster

InterPro

Analysis Name: InterPro Annotations of cucumber (Chinese Long)
Date Performed: 2016-09-28


IPR Term	IPR Description	Source	Source Term	Source Description	Alignment
None	No IPR available	PANTHER	PTHR37225	FAMILY NOT NAMED	coord: 1..69 score: 4.0
None	No IPR available	PANTHER	PTHR37225:SF1	SUBFAMILY NOT NAMED	coord: 1..69 score: 4.0

Synteny

The following gene(s) are orthologous to this gene:


Gene	Orthologue	Organism	Block
Csa4G056810	Cla005440	Watermelon (97103) v1	cuwmB311
Csa4G056810	MELO3C016236	Melon (DHL92) v3.5.1	cumeB300
Csa4G056810	ClCG07G010920	Watermelon (Charleston Gray)	cuwcgB324
Csa4G056810	MELO3C016236.2	Melon (DHL92) v3.6.1	cumedB284
Csa4G056810	Cla97C07G137650	Watermelon (97103) v2	cuwmbB321
Csa4G056810	Bhi01G002378	Wax gourd	cuwgoB365
Csa4G056810	CSPI04G07120	Wild cucumber (PI 183967)	cpicuB182
Csa4G056810	Cucsa.180060	Cucumber (Gy14) v1	cgycuB275
Csa4G056810	CmaCh04G006120	Cucurbita maxima (Rimu)	cmacuB708
Csa4G056810	CmoCh04G006600	Cucurbita moschata (Rifu)	cmocuB699
Csa4G056810	Cp4.1LG01g01140	Cucurbita pepo (Zucchini)	cpecuB399

The following gene(s) are paralogous to this gene:

None

The following block(s) are covering this gene:


Gene	Organism	Block
Csa4G056810	Cucumber (Chinese Long) v2	cucuB136
Csa4G056810	Cucurbita maxima (Rimu)	cmacuB337
Csa4G056810	Cucurbita moschata (Rifu)	cmocuB325
Csa4G056810	Cucurbita pepo (Zucchini)	cpecuB221
Csa4G056810	Bottle gourd (USVL1VR-Ls)	culsiB296
Csa4G056810	Bottle gourd (USVL1VR-Ls)	culsiB304
Csa4G056810	Cucumber (Gy14) v2	cgybcuB165
Csa4G056810	Cucumber (Gy14) v2	cgybcuB175
Csa4G056810	Silver-seed gourd	carcuB0047
Csa4G056810	Silver-seed gourd	carcuB0677