Cla97C07G137650 (gene) Watermelon (97103) v2

Overview
NameCla97C07G137650
Typegene
OrganismCitrullus lanatus (Watermelon (97103) v2)
Description3-isopropylmalate dehydratase large subunit
LocationCla97Chr07 : 25222786 .. 25223090 (+)
Genome Viewer
Sequences
The following sequences are available for this feature:

Gene sequence (with intron)

Legend: polypeptideexonCDS
Hold the cursor over a type above to highlight its positions in the sequence below.
ATGGATGGATTGCAGGAAATGGGGGTTCCAGTGCTGGGGATTGTTGCAGCTGCAGCCATCACCTTCTACGCCGTAAGCTTTTCAGAGCTTCGAGAGGTACCTTTCTGTCTTCCCTCTTTCCATGTTTCATACTTTTTAGACTTGAAATTATAAAACCAATTAATGGATTCTTAAATTGATGGAATGTGAAGAAATCATTCAGAGACTTTGATGAATCAGAGGATCAGAAAGGAGGGTTCCAGATGACTTCAAGTTCAAGAGAAAGGCGAGCAAGAAGGAAGGCTGAAAAGGAAGCTAAGAGATGA

mRNA sequence

ATGGATGGATTGCAGGAAATGGGGGTTCCAGTGCTGGGGATTGTTGCAGCTGCAGCCATCACCTTCTACGCCGTAAGCTTTTCAGAGCTTCGAGAGAAATCATTCAGAGACTTTGATGAATCAGAGGATCAGAAAGGAGGGTTCCAGATGACTTCAAGTTCAAGAGAAAGGCGAGCAAGAAGGAAGGCTGAAAAGGAAGCTAAGAGATGA

Coding sequence (CDS)

ATGGATGGATTGCAGGAAATGGGGGTTCCAGTGCTGGGGATTGTTGCAGCTGCAGCCATCACCTTCTACGCCGTAAGCTTTTCAGAGCTTCGAGAGAAATCATTCAGAGACTTTGATGAATCAGAGGATCAGAAAGGAGGGTTCCAGATGACTTCAAGTTCAAGAGAAAGGCGAGCAAGAAGGAAGGCTGAAAAGGAAGCTAAGAGATGA

Protein sequence

MDGLQEMGVPVLGIVAAAAITFYAVSFSELREKSFRDFDESEDQKGGFQMTSSSRERRARRKAEKEAKR
Homology
[Close]
BLAST of Cla97C07G137650 vs. NCBI nr
Match: XP_008451897.1 (PREDICTED: uncharacterized protein LOC103493052 [Cucumis melo] >XP_008451898.1 PREDICTED: uncharacterized protein LOC103493052 [Cucumis melo] >XP_008451899.1 PREDICTED: uncharacterized protein LOC103493052 [Cucumis melo] >XP_008451900.1 PREDICTED: uncharacterized protein LOC103493052 [Cucumis melo] >XP_016901164.1 PREDICTED: uncharacterized protein LOC103493052 [Cucumis melo])

HSP 1 Score: 119.4 bits (298), Expect = 4.8e-24
Identity = 64/69 (92.75%), Postives = 67/69 (97.10%), Query Frame = 0 

Query: 1  MDGLQEMGVPVLGIVAAAAITFYAVSFSELREKSFRDFDESEDQKGGFQMTSSSRERRAR 60
          MDGLQEMG+P+LGIVAAAAITFYAVSFSELREKSF+D DE EDQKGGFQMTSSSRERRAR
Sbjct: 1  MDGLQEMGIPILGIVAAAAITFYAVSFSELREKSFKDLDELEDQKGGFQMTSSSRERRAR 60

Query: 61 RKAEKEAKR 70
          RKAEKEAKR
Sbjct: 61 RKAEKEAKR 69

[Close]
BLAST of Cla97C07G137650 vs. NCBI nr
Match: XP_004147735.1 (PREDICTED: uncharacterized protein LOC101211279 [Cucumis sativus] >XP_011653258.1 PREDICTED: uncharacterized protein LOC101211279 [Cucumis sativus] >XP_011653259.1 PREDICTED: uncharacterized protein LOC101211279 [Cucumis sativus] >KGN53493.1 hypothetical protein Csa_4G056810 [Cucumis sativus])

HSP 1 Score: 118.6 bits (296), Expect = 8.2e-24
Identity = 64/69 (92.75%), Postives = 67/69 (97.10%), Query Frame = 0 

Query: 1  MDGLQEMGVPVLGIVAAAAITFYAVSFSELREKSFRDFDESEDQKGGFQMTSSSRERRAR 60
          MDGLQEMG+P+LGIVAAAAITFYAVSFSELREKSF+D DE EDQKGGFQMTSSSRERRAR
Sbjct: 1  MDGLQEMGIPMLGIVAAAAITFYAVSFSELREKSFKDLDELEDQKGGFQMTSSSRERRAR 60

Query: 61 RKAEKEAKR 70
          RKAEKEAKR
Sbjct: 61 RKAEKEAKR 69

[Close]
BLAST of Cla97C07G137650 vs. NCBI nr
Match: XP_022136426.1 (uncharacterized protein LOC111008135 [Momordica charantia])

HSP 1 Score: 114.0 bits (284), Expect = 2.0e-22
Identity = 60/69 (86.96%), Postives = 67/69 (97.10%), Query Frame = 0 

Query: 1  MDGLQEMGVPVLGIVAAAAITFYAVSFSELREKSFRDFDESEDQKGGFQMTSSSRERRAR 60
          MDGLQ++G+PVLGIVAAAAITFYAVSF+ELREKSF+D DESED+ GGF+MTSSSRERRAR
Sbjct: 1  MDGLQQLGIPVLGIVAAAAITFYAVSFAELREKSFKDLDESEDENGGFKMTSSSRERRAR 60

Query: 61 RKAEKEAKR 70
          RKAEKEAKR
Sbjct: 61 RKAEKEAKR 69

[Close]
BLAST of Cla97C07G137650 vs. NCBI nr
Match: XP_023545078.1 (uncharacterized protein LOC111804483 [Cucurbita pepo subsp. pepo])

HSP 1 Score: 109.8 bits (273), Expect = 3.8e-21
Identity = 58/69 (84.06%), Postives = 66/69 (95.65%), Query Frame = 0 

Query: 1  MDGLQEMGVPVLGIVAAAAITFYAVSFSELREKSFRDFDESEDQKGGFQMTSSSRERRAR 60
          MDGLQ++GVP++GIVAAAAITFYAVSFSE+REKSFRD DESED+  GF+MT+SSRERRAR
Sbjct: 1  MDGLQQLGVPLMGIVAAAAITFYAVSFSEIREKSFRDLDESEDENPGFKMTASSRERRAR 60

Query: 61 RKAEKEAKR 70
          RKAEKEAKR
Sbjct: 61 RKAEKEAKR 69

[Close]
BLAST of Cla97C07G137650 vs. NCBI nr
Match: XP_022983590.1 (uncharacterized protein LOC111482149 [Cucurbita maxima])

HSP 1 Score: 108.2 bits (269), Expect = 1.1e-20
Identity = 58/69 (84.06%), Postives = 65/69 (94.20%), Query Frame = 0 

Query: 1  MDGLQEMGVPVLGIVAAAAITFYAVSFSELREKSFRDFDESEDQKGGFQMTSSSRERRAR 60
          MDGLQ+ GVP++GIVAAAAITFYAVSFSE+REKSFRD DESED+  GF+MT+SSRERRAR
Sbjct: 1  MDGLQQWGVPLVGIVAAAAITFYAVSFSEIREKSFRDLDESEDENRGFKMTASSRERRAR 60

Query: 61 RKAEKEAKR 70
          RKAEKEAKR
Sbjct: 61 RKAEKEAKR 69

[Close]
BLAST of Cla97C07G137650 vs. TrEMBL
Match: tr|A0A1S3BRZ5|A0A1S3BRZ5_CUCME (uncharacterized protein LOC103493052 OS=Cucumis melo OX=3656 GN=LOC103493052 PE=4 SV=1)

HSP 1 Score: 119.4 bits (298), Expect = 3.2e-24
Identity = 64/69 (92.75%), Postives = 67/69 (97.10%), Query Frame = 0 

Query: 1  MDGLQEMGVPVLGIVAAAAITFYAVSFSELREKSFRDFDESEDQKGGFQMTSSSRERRAR 60
          MDGLQEMG+P+LGIVAAAAITFYAVSFSELREKSF+D DE EDQKGGFQMTSSSRERRAR
Sbjct: 1  MDGLQEMGIPILGIVAAAAITFYAVSFSELREKSFKDLDELEDQKGGFQMTSSSRERRAR 60

Query: 61 RKAEKEAKR 70
          RKAEKEAKR
Sbjct: 61 RKAEKEAKR 69

[Close]
BLAST of Cla97C07G137650 vs. TrEMBL
Match: tr|A0A0A0KVD4|A0A0A0KVD4_CUCSA (Uncharacterized protein OS=Cucumis sativus OX=3659 GN=Csa_4G056810 PE=4 SV=1)

HSP 1 Score: 118.6 bits (296), Expect = 5.4e-24
Identity = 64/69 (92.75%), Postives = 67/69 (97.10%), Query Frame = 0 

Query: 1  MDGLQEMGVPVLGIVAAAAITFYAVSFSELREKSFRDFDESEDQKGGFQMTSSSRERRAR 60
          MDGLQEMG+P+LGIVAAAAITFYAVSFSELREKSF+D DE EDQKGGFQMTSSSRERRAR
Sbjct: 1  MDGLQEMGIPMLGIVAAAAITFYAVSFSELREKSFKDLDELEDQKGGFQMTSSSRERRAR 60

Query: 61 RKAEKEAKR 70
          RKAEKEAKR
Sbjct: 61 RKAEKEAKR 69

[Close]
BLAST of Cla97C07G137650 vs. TrEMBL
Match: tr|V4UTQ1|V4UTQ1_9ROSI (Uncharacterized protein OS=Citrus clementina OX=85681 GN=CICLE_v10013268mg PE=4 SV=1)

HSP 1 Score: 94.0 bits (232), Expect = 1.4e-16
Identity = 53/70 (75.71%), Postives = 63/70 (90.00%), Query Frame = 0 

Query: 1  MDGLQEMGVPVLGIVAAAAITFYAVSFSELREKSFRDF-DESEDQK-GGFQMTSSSRERR 60
          MDG+ +MG+PVLGIVAAAA+TFYAVSF+ELREKSFRD  DESED+  GGFQ + SSRERR
Sbjct: 1  MDGMMQMGLPVLGIVAAAAVTFYAVSFAELREKSFRDLDDESEDENGGGFQKSLSSRERR 60

Query: 61 ARRKAEKEAK 69
          +RRKA+K+AK
Sbjct: 61 SRRKADKQAK 70

[Close]
BLAST of Cla97C07G137650 vs. TrEMBL
Match: tr|A0A2H5MWX0|A0A2H5MWX0_CITUN (Uncharacterized protein OS=Citrus unshiu OX=55188 GN=CUMW_002670 PE=4 SV=1)

HSP 1 Score: 94.0 bits (232), Expect = 1.4e-16
Identity = 53/70 (75.71%), Postives = 63/70 (90.00%), Query Frame = 0 

Query: 1  MDGLQEMGVPVLGIVAAAAITFYAVSFSELREKSFRDF-DESEDQK-GGFQMTSSSRERR 60
          MDG+ +MG+PVLGIVAAAA+TFYAVSF+ELREKSFRD  DESED+  GGFQ + SSRERR
Sbjct: 1  MDGMMQMGLPVLGIVAAAAVTFYAVSFAELREKSFRDLDDESEDENGGGFQKSLSSRERR 60

Query: 61 ARRKAEKEAK 69
          +RRKA+K+AK
Sbjct: 61 SRRKADKQAK 70

[Close]
BLAST of Cla97C07G137650 vs. TrEMBL
Match: tr|A0A067FLP3|A0A067FLP3_CITSI (Uncharacterized protein OS=Citrus sinensis OX=2711 GN=CISIN_1g035171mg PE=4 SV=1)

HSP 1 Score: 94.0 bits (232), Expect = 1.4e-16
Identity = 53/70 (75.71%), Postives = 63/70 (90.00%), Query Frame = 0 

Query: 1  MDGLQEMGVPVLGIVAAAAITFYAVSFSELREKSFRDF-DESEDQK-GGFQMTSSSRERR 60
          MDG+ +MG+PVLGIVAAAA+TFYAVSF+ELREKSFRD  DESED+  GGFQ + SSRERR
Sbjct: 1  MDGMMQMGLPVLGIVAAAAVTFYAVSFAELREKSFRDLDDESEDENGGGFQKSLSSRERR 60

Query: 61 ARRKAEKEAK 69
          +RRKA+K+AK
Sbjct: 61 SRRKADKQAK 70

[Close]
BLAST of Cla97C07G137650 vs. TAIR10
Match: AT3G22210.1 (unknown protein)

HSP 1 Score: 68.2 bits (165), Expect = 2.3e-12
Identity = 36/66 (54.55%), Postives = 54/66 (81.82%), Query Frame = 0 

Query: 1  MDGLQEMGVPVLGIVAAAAITFYAVSFSELREKSFRDFDESEDQKGGFQMTSSSRERRAR 60
          M+G+  + +PVLGIVA + +TFYAVSF+E+REKSF+D  +SE++  GF+ + SSRERR++
Sbjct: 1  MEGISHIALPVLGIVAVSVVTFYAVSFAEIREKSFKDVYDSENEV-GFKTSLSSRERRSK 60

Query: 61 RKAEKE 67
          R+A K+
Sbjct: 61 REANKK 65

The following BLAST results are available for this feature:
BLAST of Cla97C07G137650 vs. NCBI nr
Match NameE-valueIdentityDescription
XP_008451897.14.8e-2492.75PREDICTED: uncharacterized protein LOC103493052 [Cucumis melo] >XP_008451898.1 P... [more]
XP_004147735.18.2e-2492.75PREDICTED: uncharacterized protein LOC101211279 [Cucumis sativus] >XP_011653258.... [more]
XP_022136426.12.0e-2286.96uncharacterized protein LOC111008135 [Momordica charantia][more]
XP_023545078.13.8e-2184.06uncharacterized protein LOC111804483 [Cucurbita pepo subsp. pepo][more]
XP_022983590.11.1e-2084.06uncharacterized protein LOC111482149 [Cucurbita maxima][more]
BLAST of Cla97C07G137650 vs. TrEMBL
Match NameE-valueIdentityDescription
tr|A0A1S3BRZ5|A0A1S3BRZ5_CUCME3.2e-2492.75uncharacterized protein LOC103493052 OS=Cucumis melo OX=3656 GN=LOC103493052 PE=... [more]
tr|A0A0A0KVD4|A0A0A0KVD4_CUCSA5.4e-2492.75Uncharacterized protein OS=Cucumis sativus OX=3659 GN=Csa_4G056810 PE=4 SV=1[more]
tr|V4UTQ1|V4UTQ1_9ROSI1.4e-1675.71Uncharacterized protein OS=Citrus clementina OX=85681 GN=CICLE_v10013268mg PE=4 ... [more]
tr|A0A2H5MWX0|A0A2H5MWX0_CITUN1.4e-1675.71Uncharacterized protein OS=Citrus unshiu OX=55188 GN=CUMW_002670 PE=4 SV=1[more]
tr|A0A067FLP3|A0A067FLP3_CITSI1.4e-1675.71Uncharacterized protein OS=Citrus sinensis OX=2711 GN=CISIN_1g035171mg PE=4 SV=1[more]
BLAST of Cla97C07G137650 vs. Swiss-Prot
Match NameE-valueIdentityDescription
BLAST of Cla97C07G137650 vs. TAIR10
Match NameE-valueIdentityDescription
AT3G22210.12.3e-1254.55unknown protein[more]
GO Annotation
GO Assignments
This gene is annotated with the following GO terms.
Category Term Accession Term Name
biological_process GO:0000023 maltose metabolic process
biological_process GO:0006098 pentose-phosphate shunt
biological_process GO:0019252 starch biosynthetic process
biological_process GO:0008150 biological_process
cellular_component GO:0016021 integral component of membrane
cellular_component GO:0016020 membrane
cellular_component GO:0005575 cellular_component
molecular_function GO:0003674 molecular_function
Relationships

The following mRNA feature(s) are a part of this gene:

Feature NameUnique NameType
Cla97C07G137650.1Cla97C07G137650.1mRNA


InterPro
Analysis Name: InterPro Annotations of watermelon 97103 v2
Date Performed: 2019-05-12
IPR TermIPR DescriptionSourceSource TermSource DescriptionAlignment
NoneNo IPR availableMOBIDB_LITEmobidb-litedisorder_predictioncoord: 36..69
NoneNo IPR availableMOBIDB_LITEmobidb-litedisorder_predictioncoord: 54..69
NoneNo IPR availablePANTHERPTHR37225FAMILY NOT NAMEDcoord: 1..68

Synteny
The following gene(s) are orthologous to this gene:
GeneOrthologueOrganismBlock
Cla97C07G137650Cla005440Watermelon (97103) v1wmwmbB168
Cla97C07G137650Csa4G056810Cucumber (Chinese Long) v2cuwmbB321
Cla97C07G137650ClCG07G010920Watermelon (Charleston Gray)wcgwmbB307
Cla97C07G137650CmaCh04G006120Cucurbita maxima (Rimu)cmawmbB782
Cla97C07G137650CmoCh04G006600Cucurbita moschata (Rifu)cmowmbB756
Cla97C07G137650MELO3C016236.2Melon (DHL92) v3.6.1medwmbB493
The following gene(s) are paralogous to this gene:

None

The following block(s) are covering this gene:
GeneOrganismBlock
Cla97C07G137650Silver-seed gourdcarwmbB0043
Cla97C07G137650Silver-seed gourdcarwmbB0682
Cla97C07G137650Cucumber (Gy14) v2cgybwmbB304
Cla97C07G137650Cucumber (Gy14) v1cgywmbB324
Cla97C07G137650Cucurbita maxima (Rimu)cmawmbB350
Cla97C07G137650Cucurbita moschata (Rifu)cmowmbB335
Cla97C07G137650Wild cucumber (PI 183967)cpiwmbB331
Cla97C07G137650Cucumber (Chinese Long) v3cucwmbB329
Cla97C07G137650Bottle gourd (USVL1VR-Ls)lsiwmbB411
Cla97C07G137650Melon (DHL92) v3.6.1medwmbB484
Cla97C07G137650Melon (DHL92) v3.5.1mewmbB491
Cla97C07G137650Wax gourdwgowmbB219