MELO3C016236.2 (gene) Melon (DHL92) v3.6.1

NameMELO3C016236.2
Typegene
OrganismCucumis melo (Melon (DHL92) v3.6.1)
Description3-isopropylmalate dehydratase large subunit
Locationchr07 : 22597158 .. 22600541 (-)
The following sequences are available for this feature:

Gene sequence (with intron)

Legend: five_prime_UTRexonCDSthree_prime_UTR
Hold the cursor over a type above to highlight its positions in the sequence below.
AGTTTTGTTTTCGGACTAAATTTAAAAGAGAAAAAAAAAACGTTATCTACATTACGTCATCTTATCCGTCTTCACAAAAACTTAGCTCAAGTCACTGAAGCATCGACTCTCCAATACAGATTTGTTTAGAAAGAAGAAGGAAGTGGAAAATGGATGGATTGCAGGAAATGGGGATTCCAATTCTGGGGATTGTTGCAGCTGCCGCCATTACCTTCTACGCTGTAAGCTTTTCAGAGCTTCGAGAGGTACCTTTCTGTCTTCCTTTTTTTTCTTCCAATTTTCATACATTTTCTACTTCAAATTATTAACCAATTAATGGGTTCTTGAATTGGGGGGATGCTAAGAAATCATTCAAAGATTTGGATGAATTGGAGGATCAGAAAGGAGGGTTTCAGATGACTTCAAGTTCTAGAGAAAGGCGAGCAAGAAGGAAGGCTGAAAAGGAAGCTAAAAGATGATCATTTTGTAAGATAATTTGCCTCTTTTACAAGCCTTTTCATTTTTTTTTTTTTTGTAATGTCAGTTAAGGATTCTAATAAGAACTTTTATTTCAAGAAATGTATCTGGAAAAAGAGCAACTCTGCTTTGAAATTTATATCAAATATCATATTAACAACATCCAAGATGCAGAAGGATTTATATGTTCCTTGAGAGTAGGCATGATTCTGTCCTTCAAGCCATTCATTGCAACTATTTGCCGCTACTTTTTCTGATTCTTCAATTCCTTCACTCTCTCTTCAGTGGCTTTCAGTGCTTTTCCATATTTGCTCGTTAACTGGAAACAAGAAGCGGCGGATCAAATTCTTAGAAAACATGTAGAATTGATACTCATTACTCAATCATGTTATTATTAGACTTTTTTAGATACCCCATCAACTTCTTGAGGAGAGATCGTAAATGATGGAGACAACGTTATAGTATCCCCTCCAGTTCTTGTTATCAAACCATTTTCTCGACATTCAGCTCCAAAACATTTACCAACTCCTGTTTATATCAATCACACAACAACCTATAAGCATAACTATGACCCTGGTAAATCAAGATCCACCACATTTCTAGAGATTCGTTATCTTGAGGTTAAGCTGGTTCAGAACTATCAAGATTTATAACCTACTACGCCATGTTTTTAGGCTATAATTATTTTATTCAAACCATATAATCTTTCTTTTCACGACATTAGGCTTGGCCCTGAGACCAAGATGTTTTTTGATATAAGCGATTAAGATGTATATATATCGATGAGAATTATATAAAGATAAAACATACCCCATTCAGGAGGGAATGGATCATTTGGTGATTTATTGTCTACAACCTCTATGCCAGCTATCAAATCAGTCCCTCGTATCTGCAAATTTTAGTTTATGAAGAACTAAAGATGCCACAAATTCATAAGTCAAACTTAATCATGTGAGTAACTCTCCTTATCTCTCCAATGATAAGGCTATCAGAGGAAGCTTTTATGCCATCCAGAAGTCTTGGGGAGATGCGGTTTACTTGCTCAACAATATTCCTTTCCCTACAATAAACATACCAACAATTTGGCCATTTTAAACATATTGCTTCTATATGTGAGTTTGTATCATAATTCATAACTATTACATTTATTCTTTTTTAACTTCAGATCGTGTTTACATCCTTAAACAAGGAGGCCGACTAATTCAAATGGAAAGTAGGTCCAGTCCACCTTGATGAATTGTAGCAGTTATATTGTACCAATAAATCAATGGATCTTTGAAATGTTTGTCCACTTCTATGGTTTCTCTCTCATTCTGAACACTGAAAGTAAAAAACCAAAAGATCTGGGGTATGAAATCTTGAGTGTTTCAAGTGCGACAGCACATGAGACCGGATGTCCAGGATAAGTAAATGTAAATCCATGAGAAAAGGAACCTGGAAGTAATATTGCTGGATAAAGAAAATAGGCTATCAGTTACTGGAGTTGAAAATTATTAACAGTAATTTACTTGTTTATTTGTATAAGCAGTATACCTAGCTCGTTGCTTTGGGAGTAATACCACATCAAAGATCTCAGGGCTAATGATAACAGCTCCAATAGGAAGGTATGCCGATGAGATAGTGCCTAAAGTGTTCAGTACATAAGGCTTCATAGAAACAAGATATTTGTTTAAACTAAGCAAGATATTTGTTTAAGTTAACTTCACCTTTGCAAGGGATAAAAGGTCTGGTTTAATATTATATTTATCGCATCCAAACATTGTCCCTCGTCTTCCAAAGCCACATATAACCTATAGAGAGAAATATTGAAGGCAAAATCTGATTTATATTGAAACCATTCTTGTAAACAAAGTAAAAGGATGAGGACAAAAATTTTCATTTAGCAATGTACCCCTTCAGCAATAAAAAGTATACCATACTTCTTTAGCACAGCTTGGACCTGCAATATAAAATAAAAAAAAATTATTAAAGTGACATTAATGAGAGAATCTGAGGGTTTGATTACAGCATCGAAGATTAGAGATGTTCATTTAACACGAGAGGACACGGTGAATCTTCAAATATACGGAAAATAGGGATGGGGGATTATTTTTTCCTATTGACAATTCGGGCTAGGGAACTGGGAATACATTTCTGGGAGGGAGTGGGAATTATTTTTCCCCACCTCGATCCCATTGACATATATGTATGTGTATGTGTGTGTATATATATTATATATATATATATTTATTTATTTATCAAAATTACAAAAAAAACTTGCGGAGAATATTTTACTCATTCCCGTGGGAAACCGATCCTGCGGAAACCCCTTAGAGAATCCCGTCCCATTTTCTATGAAGAAATTTGTGGAGATGGGATAGGGGACGGAGACAGGAATGGGTTCGGGGAGTGGCATCCCCGTCCCCTGTGGACAGCTCTAGCCAAGAAACAAGAGAGGGAAGATGGAAAGTCTATGATAAACAGTTGAACTTAGCAGTATGTTTGAGACAACAACCAATTGTATGATGGACCAAAAGCCTACATTTTCAAAATCAGCTGTTATGAATGTGCCTGATAAGATAGAGGGTTTGATGGAGTTTATTGATGTAACCGTTTCTTTAATATCTTTGCAGTAGAGTTTCTTTCTTTCTTATATCATCTATATGCTACTGCAATATTATTATTCAGTCTTGCATAGAACGAAAATATGTAAAAGGAGAAAAACAAGAAAAGTTTTGCCGATGCATGTTTTTACTAATTTAAGTATCTCATAATGCAAAGATCTTACCTTTTCAAAATAAGTTGCAGGTGGAAGAATCACACCACCAGCTCCCATGACAGGTTCAGGCAATGAAGGCAGCAATCTGAAGTGGAAAACGAAACACATGAGATAGAGTCAAGTATGGTATCATGTTATCGTACTATAAGTATACACATCATATTCAACTT

mRNA sequence

AGTTTTGTTTTCGGACTAAATTTAAAAGAGAAAAAAAAAACGTTATCTACATTACGTCATCTTATCCGTCTTCACAAAAACTTAGCTCAAGTCACTGAAGCATCGACTCTCCAATACAGATTTGTTTAGAAAGAAGAAGGAAGTGGAAAATGGATGGATTGCAGGAAATGGGGATTCCAATTCTGGGGATTGTTGCAGCTGCCGCCATTACCTTCTACGCTGTAAGCTTTTCAGAGCTTCGAGAGAAATCATTCAAAGATTTGGATGAATTGGAGGATCAGAAAGGAGGGTTTCAGATGACTTCAAGTTCTAGAGAAAGGCGAGCAAGAAGGAAGGCTGAAAAGGAAGCTAAAAGATGATCATTTTATCGTGTTTACATCCTTAAACAAGGAGGCCGACTAATTCAAATGGAAAGTAGGTCCAGTCCACCTTGATGAATTGTAGCAGTTATATTGTACCAATAAATCAATGGATCTTTGAAATGTTTGTCCACTTCTATGGTTTCTCTCTCATTCTGAACACTGAAAGTAAAAAACCAAAAGATCTGGGGTATGAAATCTTGAGTGTTTCAAGTGCGACAGCACATGAGACCGGATGTCCAGGATAAGTAAATGTAAATCCATGAGAAAAGGAACCTGGAAGTAATATTGCTGGATAAAGAAAATAGGCTATCAGTTACTGGAGTTGAAAATTATTAACAGTAATTTACTTGTTTATTTGTATAAGCAGTATACCTAGCTCGTTGCTTTGGGAGTAATACCACATCAAAGATCTCAGGGCTAATGATAACAGCTCCAATAGGAAGGTGGAAGAATCACACCACCAGCTCCCATGACAGGTTCAGGCAATGAAGGCAGCAATCTGAAGTGGAAAACGAAACACATGAGATAGAGTCAAGTATGGTATCATGTTATCGTACTATAAGTATACACATCATATTCAACTT

Coding sequence (CDS)

ATGGATGGATTGCAGGAAATGGGGATTCCAATTCTGGGGATTGTTGCAGCTGCCGCCATTACCTTCTACGCTGTAAGCTTTTCAGAGCTTCGAGAGAAATCATTCAAAGATTTGGATGAATTGGAGGATCAGAAAGGAGGGTTTCAGATGACTTCAAGTTCTAGAGAAAGGCGAGCAAGAAGGAAGGCTGAAAAGGAAGCTAAAAGATGA

Protein sequence

MDGLQEMGIPILGIVAAAAITFYAVSFSELREKSFKDLDELEDQKGGFQMTSSSRERRARRKAEKEAKR
BLAST of MELO3C016236.2 vs. NCBI nr
Match: XP_008451897.1 (PREDICTED: uncharacterized protein LOC103493052 [Cucumis melo] >XP_008451898.1 PREDICTED: uncharacterized protein LOC103493052 [Cucumis melo] >XP_008451899.1 PREDICTED: uncharacterized protein LOC103493052 [Cucumis melo] >XP_008451900.1 PREDICTED: uncharacterized protein LOC103493052 [Cucumis melo] >XP_016901164.1 PREDICTED: uncharacterized protein LOC103493052 [Cucumis melo])

HSP 1 Score: 126.7 bits (317), Expect = 3.0e-26
Identity = 69/69 (100.00%), Postives = 69/69 (100.00%), Query Frame = 0

Query: 1  MDGLQEMGIPILGIVAAAAITFYAVSFSELREKSFKDLDELEDQKGGFQMTSSSRERRAR 60
          MDGLQEMGIPILGIVAAAAITFYAVSFSELREKSFKDLDELEDQKGGFQMTSSSRERRAR
Sbjct: 1  MDGLQEMGIPILGIVAAAAITFYAVSFSELREKSFKDLDELEDQKGGFQMTSSSRERRAR 60

Query: 61 RKAEKEAKR 70
          RKAEKEAKR
Sbjct: 61 RKAEKEAKR 69

BLAST of MELO3C016236.2 vs. NCBI nr
Match: XP_004147735.1 (PREDICTED: uncharacterized protein LOC101211279 [Cucumis sativus] >XP_011653258.1 PREDICTED: uncharacterized protein LOC101211279 [Cucumis sativus] >XP_011653259.1 PREDICTED: uncharacterized protein LOC101211279 [Cucumis sativus] >KGN53493.1 hypothetical protein Csa_4G056810 [Cucumis sativus])

HSP 1 Score: 125.6 bits (314), Expect = 6.7e-26
Identity = 68/69 (98.55%), Postives = 69/69 (100.00%), Query Frame = 0

Query: 1  MDGLQEMGIPILGIVAAAAITFYAVSFSELREKSFKDLDELEDQKGGFQMTSSSRERRAR 60
          MDGLQEMGIP+LGIVAAAAITFYAVSFSELREKSFKDLDELEDQKGGFQMTSSSRERRAR
Sbjct: 1  MDGLQEMGIPMLGIVAAAAITFYAVSFSELREKSFKDLDELEDQKGGFQMTSSSRERRAR 60

Query: 61 RKAEKEAKR 70
          RKAEKEAKR
Sbjct: 61 RKAEKEAKR 69

BLAST of MELO3C016236.2 vs. NCBI nr
Match: XP_022136426.1 (uncharacterized protein LOC111008135 [Momordica charantia])

HSP 1 Score: 115.9 bits (289), Expect = 5.3e-23
Identity = 61/69 (88.41%), Postives = 67/69 (97.10%), Query Frame = 0

Query: 1  MDGLQEMGIPILGIVAAAAITFYAVSFSELREKSFKDLDELEDQKGGFQMTSSSRERRAR 60
          MDGLQ++GIP+LGIVAAAAITFYAVSF+ELREKSFKDLDE ED+ GGF+MTSSSRERRAR
Sbjct: 1  MDGLQQLGIPVLGIVAAAAITFYAVSFAELREKSFKDLDESEDENGGFKMTSSSRERRAR 60

Query: 61 RKAEKEAKR 70
          RKAEKEAKR
Sbjct: 61 RKAEKEAKR 69

BLAST of MELO3C016236.2 vs. NCBI nr
Match: XP_023545078.1 (uncharacterized protein LOC111804483 [Cucurbita pepo subsp. pepo])

HSP 1 Score: 109.4 bits (272), Expect = 5.0e-21
Identity = 56/69 (81.16%), Postives = 66/69 (95.65%), Query Frame = 0

Query: 1  MDGLQEMGIPILGIVAAAAITFYAVSFSELREKSFKDLDELEDQKGGFQMTSSSRERRAR 60
          MDGLQ++G+P++GIVAAAAITFYAVSFSE+REKSF+DLDE ED+  GF+MT+SSRERRAR
Sbjct: 1  MDGLQQLGVPLMGIVAAAAITFYAVSFSEIREKSFRDLDESEDENPGFKMTASSRERRAR 60

Query: 61 RKAEKEAKR 70
          RKAEKEAKR
Sbjct: 61 RKAEKEAKR 69

BLAST of MELO3C016236.2 vs. NCBI nr
Match: XP_022983590.1 (uncharacterized protein LOC111482149 [Cucurbita maxima])

HSP 1 Score: 107.8 bits (268), Expect = 1.5e-20
Identity = 56/69 (81.16%), Postives = 65/69 (94.20%), Query Frame = 0

Query: 1  MDGLQEMGIPILGIVAAAAITFYAVSFSELREKSFKDLDELEDQKGGFQMTSSSRERRAR 60
          MDGLQ+ G+P++GIVAAAAITFYAVSFSE+REKSF+DLDE ED+  GF+MT+SSRERRAR
Sbjct: 1  MDGLQQWGVPLVGIVAAAAITFYAVSFSEIREKSFRDLDESEDENRGFKMTASSRERRAR 60

Query: 61 RKAEKEAKR 70
          RKAEKEAKR
Sbjct: 61 RKAEKEAKR 69

BLAST of MELO3C016236.2 vs. TAIR10
Match: AT3G22210.1 (unknown protein)

HSP 1 Score: 69.3 bits (168), Expect = 1.0e-12
Identity = 35/66 (53.03%), Postives = 54/66 (81.82%), Query Frame = 0

Query: 1  MDGLQEMGIPILGIVAAAAITFYAVSFSELREKSFKDLDELEDQKGGFQMTSSSRERRAR 60
          M+G+  + +P+LGIVA + +TFYAVSF+E+REKSFKD+ + E++  GF+ + SSRERR++
Sbjct: 1  MEGISHIALPVLGIVAVSVVTFYAVSFAEIREKSFKDVYDSENEV-GFKTSLSSRERRSK 60

Query: 61 RKAEKE 67
          R+A K+
Sbjct: 61 REANKK 65

BLAST of MELO3C016236.2 vs. TrEMBL
Match: tr|A0A1S3BRZ5|A0A1S3BRZ5_CUCME (uncharacterized protein LOC103493052 OS=Cucumis melo OX=3656 GN=LOC103493052 PE=4 SV=1)

HSP 1 Score: 126.7 bits (317), Expect = 2.0e-26
Identity = 69/69 (100.00%), Postives = 69/69 (100.00%), Query Frame = 0

Query: 1  MDGLQEMGIPILGIVAAAAITFYAVSFSELREKSFKDLDELEDQKGGFQMTSSSRERRAR 60
          MDGLQEMGIPILGIVAAAAITFYAVSFSELREKSFKDLDELEDQKGGFQMTSSSRERRAR
Sbjct: 1  MDGLQEMGIPILGIVAAAAITFYAVSFSELREKSFKDLDELEDQKGGFQMTSSSRERRAR 60

Query: 61 RKAEKEAKR 70
          RKAEKEAKR
Sbjct: 61 RKAEKEAKR 69

BLAST of MELO3C016236.2 vs. TrEMBL
Match: tr|A0A0A0KVD4|A0A0A0KVD4_CUCSA (Uncharacterized protein OS=Cucumis sativus OX=3659 GN=Csa_4G056810 PE=4 SV=1)

HSP 1 Score: 125.6 bits (314), Expect = 4.5e-26
Identity = 68/69 (98.55%), Postives = 69/69 (100.00%), Query Frame = 0

Query: 1  MDGLQEMGIPILGIVAAAAITFYAVSFSELREKSFKDLDELEDQKGGFQMTSSSRERRAR 60
          MDGLQEMGIP+LGIVAAAAITFYAVSFSELREKSFKDLDELEDQKGGFQMTSSSRERRAR
Sbjct: 1  MDGLQEMGIPMLGIVAAAAITFYAVSFSELREKSFKDLDELEDQKGGFQMTSSSRERRAR 60

Query: 61 RKAEKEAKR 70
          RKAEKEAKR
Sbjct: 61 RKAEKEAKR 69

BLAST of MELO3C016236.2 vs. TrEMBL
Match: tr|V4UTQ1|V4UTQ1_9ROSI (Uncharacterized protein OS=Citrus clementina OX=85681 GN=CICLE_v10013268mg PE=4 SV=1)

HSP 1 Score: 93.6 bits (231), Expect = 1.9e-16
Identity = 51/70 (72.86%), Postives = 63/70 (90.00%), Query Frame = 0

Query: 1  MDGLQEMGIPILGIVAAAAITFYAVSFSELREKSFKDL-DELEDQK-GGFQMTSSSRERR 60
          MDG+ +MG+P+LGIVAAAA+TFYAVSF+ELREKSF+DL DE ED+  GGFQ + SSRERR
Sbjct: 1  MDGMMQMGLPVLGIVAAAAVTFYAVSFAELREKSFRDLDDESEDENGGGFQKSLSSRERR 60

Query: 61 ARRKAEKEAK 69
          +RRKA+K+AK
Sbjct: 61 SRRKADKQAK 70

BLAST of MELO3C016236.2 vs. TrEMBL
Match: tr|A0A2H5MWX0|A0A2H5MWX0_CITUN (Uncharacterized protein OS=Citrus unshiu OX=55188 GN=CUMW_002670 PE=4 SV=1)

HSP 1 Score: 93.6 bits (231), Expect = 1.9e-16
Identity = 51/70 (72.86%), Postives = 63/70 (90.00%), Query Frame = 0

Query: 1  MDGLQEMGIPILGIVAAAAITFYAVSFSELREKSFKDL-DELEDQK-GGFQMTSSSRERR 60
          MDG+ +MG+P+LGIVAAAA+TFYAVSF+ELREKSF+DL DE ED+  GGFQ + SSRERR
Sbjct: 1  MDGMMQMGLPVLGIVAAAAVTFYAVSFAELREKSFRDLDDESEDENGGGFQKSLSSRERR 60

Query: 61 ARRKAEKEAK 69
          +RRKA+K+AK
Sbjct: 61 SRRKADKQAK 70

BLAST of MELO3C016236.2 vs. TrEMBL
Match: tr|A0A067FLP3|A0A067FLP3_CITSI (Uncharacterized protein OS=Citrus sinensis OX=2711 GN=CISIN_1g035171mg PE=4 SV=1)

HSP 1 Score: 93.6 bits (231), Expect = 1.9e-16
Identity = 51/70 (72.86%), Postives = 63/70 (90.00%), Query Frame = 0

Query: 1  MDGLQEMGIPILGIVAAAAITFYAVSFSELREKSFKDL-DELEDQK-GGFQMTSSSRERR 60
          MDG+ +MG+P+LGIVAAAA+TFYAVSF+ELREKSF+DL DE ED+  GGFQ + SSRERR
Sbjct: 1  MDGMMQMGLPVLGIVAAAAVTFYAVSFAELREKSFRDLDDESEDENGGGFQKSLSSRERR 60

Query: 61 ARRKAEKEAK 69
          +RRKA+K+AK
Sbjct: 61 SRRKADKQAK 70

The following BLAST results are available for this feature:
Match NameE-valueIdentityDescription
XP_008451897.13.0e-26100.00PREDICTED: uncharacterized protein LOC103493052 [Cucumis melo] >XP_008451898.1 P... [more]
XP_004147735.16.7e-2698.55PREDICTED: uncharacterized protein LOC101211279 [Cucumis sativus] >XP_011653258.... [more]
XP_022136426.15.3e-2388.41uncharacterized protein LOC111008135 [Momordica charantia][more]
XP_023545078.15.0e-2181.16uncharacterized protein LOC111804483 [Cucurbita pepo subsp. pepo][more]
XP_022983590.11.5e-2081.16uncharacterized protein LOC111482149 [Cucurbita maxima][more]
Match NameE-valueIdentityDescription
AT3G22210.11.0e-1253.03unknown protein[more]
Match NameE-valueIdentityDescription
Match NameE-valueIdentityDescription
tr|A0A1S3BRZ5|A0A1S3BRZ5_CUCME2.0e-26100.00uncharacterized protein LOC103493052 OS=Cucumis melo OX=3656 GN=LOC103493052 PE=... [more]
tr|A0A0A0KVD4|A0A0A0KVD4_CUCSA4.5e-2698.55Uncharacterized protein OS=Cucumis sativus OX=3659 GN=Csa_4G056810 PE=4 SV=1[more]
tr|V4UTQ1|V4UTQ1_9ROSI1.9e-1672.86Uncharacterized protein OS=Citrus clementina OX=85681 GN=CICLE_v10013268mg PE=4 ... [more]
tr|A0A2H5MWX0|A0A2H5MWX0_CITUN1.9e-1672.86Uncharacterized protein OS=Citrus unshiu OX=55188 GN=CUMW_002670 PE=4 SV=1[more]
tr|A0A067FLP3|A0A067FLP3_CITSI1.9e-1672.86Uncharacterized protein OS=Citrus sinensis OX=2711 GN=CISIN_1g035171mg PE=4 SV=1[more]
GO Assignments
This gene is annotated with the following GO terms.
Category Term Accession Term Name
biological_process GO:0008150 biological_process
biological_process GO:0000023 maltose metabolic process
biological_process GO:0006098 pentose-phosphate shunt
biological_process GO:0019252 starch biosynthetic process
cellular_component GO:0016021 integral component of membrane
cellular_component GO:0016020 membrane
cellular_component GO:0005575 cellular_component
molecular_function GO:0003674 molecular_function

The following mRNA feature(s) are a part of this gene:

Feature NameUnique NameType
MELO3C016236.2.1MELO3C016236.2.1mRNA


Analysis Name: InterPro Annotations of melon v3.6.1
Date Performed: 2018-09-25
IPR TermIPR DescriptionSourceSource TermSource DescriptionAlignment
NoneNo IPR availableCOILSCoilCoilcoord: 53..69
NoneNo IPR availableMOBIDB_LITEmobidb-litedisorder_predictioncoord: 46..69
NoneNo IPR availableMOBIDB_LITEmobidb-litedisorder_predictioncoord: 54..69
NoneNo IPR availablePANTHERPTHR37225FAMILY NOT NAMEDcoord: 1..68