CsaV3_4G007340 (gene) Cucumber (Chinese Long) v3 | Cucurbit Genomics Database (CuGenDB)

Overview


Name	CsaV3_4G007340
Type	gene
Organism	Cucumis sativus (Cucumber (Chinese Long) v3)
Description	Transmembrane protein
Location	chr4 : 4998809 .. 5001483 (-)

Genome Viewer

Gene Expression

Sequences

The following sequences are available for this feature:

Gene sequence (with intron)

Legend: exonpolypeptideCDS

Hold the cursor over a type above to highlight its positions in the sequence below.

TATCTAGTAAATGTAAAACTAATTTTATATAACATGAAACAAATTTAAACATTTTTTTGTTAGTAGAATCTAATTTTAGAATCAAATATAAGTGTGAAAACATAAAATAGTTTTTCATATTGAATCTCTTATTTCAAATAAACAAAAAGAAGACGTTATCTTGATTACGTCATCTTATCCGTCTTCACAAAAGCATAGCTTCAAGTCACCGAAGCATCCACTCTCCAGTACAGATTTAGTTTAGAAGGAAGAAGGAAGGGGAAAATGGATGGATTGCAGGAAATGGGGATTCCAATGCTTGGGATTGTTGCTGCTGCCGCCATTACCTTCTACGCTGTAAGCTTTTCAGAGCTTCGAGAGGTACCTTTCTGTCTTCCTTCTTTTTTTCCAATTTTTACACATTTTTTTACTTCAAATTATAAACCAATTAATGGGTTCTTAAATTGGGGGATCGCTAAGAAATCATTCAAAGATTTGGATGAATTGGAGGATCAGAAAGGAGGGTTTCAGATGACTTCAAGTTCTAGAGAAAGGCGAGCAAGAAGGAAGGCTGAAAAGGAAGCTAAAAGATGATCATTTTGTAAGATAATTTGCCTCTTTTACAAGTCTTTTCATTTCTTTTTTTGTAATGTCTGTTAAAGATTCTAATAGGAGCTTTTATTTCAAGAAGGCTTTGAAATCTATATCAAACATCATATTCACAACATCCAAGATGCAGAAGGATTTATACGTTCCTTGAGTGTAGACATGATTCTGTTCCTTCAAGCCATTCATTGTAACTATTTGCCGCTTCTTTTTCTGAGCCTTCAATTCCTTCACTCTCTTCAATGGCTTTCAGTGCTTTTTCGTATTTGCTCATTAACTGGAATCAAGAAACGGCGGATCAAATTCTTAGAAAACATGTAGAGAATTGATACTCATTACTCAATCATGTTATTATTAGTCTTTTTCAGATACCCCATCAACTTCTTGAGGAGAGATCATAAATGATGGAGACAGCGTTATAGTATCCCCTCCAGTTCTTATTATCAAACCATTTTTTCGACATTCAGCTCCAAAATATTTACCAACTCCTGTTTATATAAAACAGATAACAACCTATAAGCATAAGTATGACCTGGTAAATCAAGATCCACCGCATTTCTAGAGATTTGTTATCTTGAGGTTAAGCTGGTTCAGAAATATCAAGATTTATAAACTACTATGCTATTTTTTTAGGCTATAATTATTTGATTCAAATCATATACTCTTTCTTTTCACGACATTAGGCTTGGCGATGAAACCAAGGTGTTTTCTTGATATAAGCGATTAAGATGTATATATACCGATGAGAATTACATAAAGATAAAACATATCCCATTCTGGAGGGGAGGGAATGGATCATTTGGAGTCATTTCCCATTTGTGATGATCACTCAAACATCAATTCCATTCCAACTCTCTCTTTATACTTTCAAGTCCCGAGCTTAAAAACGGTTTTGTTTCTATTCCTTGTTCTGACGAGTGTACATTAGAATAAAGCTGTGTTAGTCTTGGGGGCAACCGATAACAGGATTAGCACCACAGTTGGCCATATTTGCTTTCAGGGTAGTAGTTCGTCATGGCACGACACAACAATTTAGTATTTATTCGACATTCTCACATATTTTTCAACACATTTTAAACATATTGCTTCTGTATGTGAGTTTGTATCATAATTCATAACTACTACATTTATTCTTTTTTTACTTCAGATCGTGTTTACATCCTTAAACAAGGACGCCGACTGATTCAAATGGAAAAGTAGGTCCAGTCCTCCTTGATGGATTATAGCAGTTTTATTGTACCAACAAATCATTGGATCTTTGAAATGTTTGTCCACTTTTAAGGTTTCTCTGTCATTCTGAACAATGAAAGTAAAATTCGAAAAGAACAGGGGTATGAACGTACTTGTAGATCTTGAGTGTTTCAAGTGAGACCGGATGTCCAGAATAAGTAAATCCATGAGAAAAGGAACCTGGAAGTAATATTGTTGGATAAAGAAAATAGGCTATCAGCTACTGGAGTTGGAGATTTTATATTAACAGTAATTGACTAGTTTATTGTATAAGCAGTATACCTAGCTCGTTGCTATGGGAGTAATACCACATCAAAGATTTCAGGGTTAATGATCAGGAAGGTAAGCCGATGATAGTGTCTACAGTGTGCAGTAGACTATTAGGCTTGATAGAAACAATGAAAAGCCTAAACTAAGCAAGATATTTGTTTAAGTTAACTTCACCTTTGCAAGGGAAACAAGGCCTGTTTTAATATTGTATTTATCGCATCCATACATTGTCACTAGTCTTCCAAAGCCACATATAAGCTATAGATCAGAAAGAAATATTGAAGGCAAAACCAGGTGATTTATACTGATCAAACCATTCTTGTAAACAAAGTAAAATGATGAAGACAAAAAATTTCATTAGCAATGAGCCCCATCAGCAATAAAAAGTTTATCATACTTCCTTAGCACAGCTTGGACCTGCAACATAAGAAAAATTATTATTGAAGTGACTATAAGGGTTAGTGATTCCATTTAGCCCGCCGGGGCCAATCCTCCAAGTACTCGCCCGCGTTGTTGAGTTGACAATGTAAAGTAAATTGAGATTGTGTTTTAAAGGAAAAAAATTTAATTAAGTAACTCGACTAATCAAC

mRNA sequence

ATGGATGGATTGCAGGAAATGGGGATTCCAATGCTTGGGATTGTTGCTGCTGCCGCCATTACCTTCTACGCTGTAAGCTTTTCAGAGCTTCGAGAGAAATCATTCAAAGATTTGGATGAATTGGAGGATCAGAAAGGAGGGTTTCAGATGACTTCAAGTTCTAGAGAAAGGCGAGCAAGAAGGAAGGCTGAAAAGGAAGCTAAAAGATGA

Coding sequence (CDS)

ATGGATGGATTGCAGGAAATGGGGATTCCAATGCTTGGGATTGTTGCTGCTGCCGCCATTACCTTCTACGCTGTAAGCTTTTCAGAGCTTCGAGAGAAATCATTCAAAGATTTGGATGAATTGGAGGATCAGAAAGGAGGGTTTCAGATGACTTCAAGTTCTAGAGAAAGGCGAGCAAGAAGGAAGGCTGAAAAGGAAGCTAAAAGATGA

Protein sequence

MDGLQEMGIPMLGIVAAAAITFYAVSFSELREKSFKDLDELEDQKGGFQMTSSSRERRARRKAEKEAKR

Homology

[Close]

BLAST of CsaV3_4G007340 vs. NCBI nr
Match: XP_004147735.1 (PREDICTED: uncharacterized protein LOC101211279 [Cucumis sativus] >XP_011653258.1 PREDICTED: uncharacterized protein LOC101211279 [Cucumis sativus] >XP_011653259.1 PREDICTED: uncharacterized protein LOC101211279 [Cucumis sativus] >KGN53493.1 hypothetical protein Csa_4G056810 [Cucumis sativus])

HSP 1 Score: 128.3 bits (321), Expect = 1.1e-26
Identity = 69/69 (100.00%), Postives = 69/69 (100.00%), Query Frame = 0


Query: 1  MDGLQEMGIPMLGIVAAAAITFYAVSFSELREKSFKDLDELEDQKGGFQMTSSSRERRAR 60
          MDGLQEMGIPMLGIVAAAAITFYAVSFSELREKSFKDLDELEDQKGGFQMTSSSRERRAR
Sbjct: 1  MDGLQEMGIPMLGIVAAAAITFYAVSFSELREKSFKDLDELEDQKGGFQMTSSSRERRAR 60

Query: 61 RKAEKEAKR 70
          RKAEKEAKR
Sbjct: 61 RKAEKEAKR 69

[Close]

BLAST of CsaV3_4G007340 vs. NCBI nr
Match: XP_008451897.1 (PREDICTED: uncharacterized protein LOC103493052 [Cucumis melo] >XP_008451898.1 PREDICTED: uncharacterized protein LOC103493052 [Cucumis melo] >XP_008451899.1 PREDICTED: uncharacterized protein LOC103493052 [Cucumis melo] >XP_008451900.1 PREDICTED: uncharacterized protein LOC103493052 [Cucumis melo] >XP_016901164.1 PREDICTED: uncharacterized protein LOC103493052 [Cucumis melo])

HSP 1 Score: 126.7 bits (317), Expect = 3.1e-26
Identity = 68/69 (98.55%), Postives = 69/69 (100.00%), Query Frame = 0


Query: 1  MDGLQEMGIPMLGIVAAAAITFYAVSFSELREKSFKDLDELEDQKGGFQMTSSSRERRAR 60
          MDGLQEMGIP+LGIVAAAAITFYAVSFSELREKSFKDLDELEDQKGGFQMTSSSRERRAR
Sbjct: 1  MDGLQEMGIPILGIVAAAAITFYAVSFSELREKSFKDLDELEDQKGGFQMTSSSRERRAR 60

Query: 61 RKAEKEAKR 70
          RKAEKEAKR
Sbjct: 61 RKAEKEAKR 69

[Close]

BLAST of CsaV3_4G007340 vs. NCBI nr
Match: XP_022136426.1 (uncharacterized protein LOC111008135 [Momordica charantia])

HSP 1 Score: 116.3 bits (290), Expect = 4.1e-23
Identity = 61/69 (88.41%), Postives = 67/69 (97.10%), Query Frame = 0


Query: 1  MDGLQEMGIPMLGIVAAAAITFYAVSFSELREKSFKDLDELEDQKGGFQMTSSSRERRAR 60
          MDGLQ++GIP+LGIVAAAAITFYAVSF+ELREKSFKDLDE ED+ GGF+MTSSSRERRAR
Sbjct: 1  MDGLQQLGIPVLGIVAAAAITFYAVSFAELREKSFKDLDESEDENGGFKMTSSSRERRAR 60

Query: 61 RKAEKEAKR 70
          RKAEKEAKR
Sbjct: 61 RKAEKEAKR 69

[Close]

BLAST of CsaV3_4G007340 vs. NCBI nr
Match: XP_023545078.1 (uncharacterized protein LOC111804483 [Cucurbita pepo subsp. pepo])

HSP 1 Score: 110.5 bits (275), Expect = 2.3e-21
Identity = 56/69 (81.16%), Postives = 66/69 (95.65%), Query Frame = 0


Query: 1  MDGLQEMGIPMLGIVAAAAITFYAVSFSELREKSFKDLDELEDQKGGFQMTSSSRERRAR 60
          MDGLQ++G+P++GIVAAAAITFYAVSFSE+REKSF+DLDE ED+  GF+MT+SSRERRAR
Sbjct: 1  MDGLQQLGVPLMGIVAAAAITFYAVSFSEIREKSFRDLDESEDENPGFKMTASSRERRAR 60

Query: 61 RKAEKEAKR 70
          RKAEKEAKR
Sbjct: 61 RKAEKEAKR 69

[Close]

BLAST of CsaV3_4G007340 vs. NCBI nr
Match: XP_022983590.1 (uncharacterized protein LOC111482149 [Cucurbita maxima])

HSP 1 Score: 109.0 bits (271), Expect = 6.6e-21
Identity = 56/69 (81.16%), Postives = 65/69 (94.20%), Query Frame = 0


Query: 1  MDGLQEMGIPMLGIVAAAAITFYAVSFSELREKSFKDLDELEDQKGGFQMTSSSRERRAR 60
          MDGLQ+ G+P++GIVAAAAITFYAVSFSE+REKSF+DLDE ED+  GF+MT+SSRERRAR
Sbjct: 1  MDGLQQWGVPLVGIVAAAAITFYAVSFSEIREKSFRDLDESEDENRGFKMTASSRERRAR 60

Query: 61 RKAEKEAKR 70
          RKAEKEAKR
Sbjct: 61 RKAEKEAKR 69

[Close]

BLAST of CsaV3_4G007340 vs. TAIR10
Match: AT3G22210.1 (unknown protein)

HSP 1 Score: 69.3 bits (168), Expect = 1.1e-12
Identity = 35/66 (53.03%), Postives = 54/66 (81.82%), Query Frame = 0


Query: 1  MDGLQEMGIPMLGIVAAAAITFYAVSFSELREKSFKDLDELEDQKGGFQMTSSSRERRAR 60
          M+G+  + +P+LGIVA + +TFYAVSF+E+REKSFKD+ + E++  GF+ + SSRERR++
Sbjct: 1  MEGISHIALPVLGIVAVSVVTFYAVSFAEIREKSFKDVYDSENEV-GFKTSLSSRERRSK 60

Query: 61 RKAEKE 67
          R+A K+
Sbjct: 61 REANKK 65

[Close]

BLAST of CsaV3_4G007340 vs. TrEMBL
Match: tr|A0A0A0KVD4|A0A0A0KVD4_CUCSA (Uncharacterized protein OS=Cucumis sativus OX=3659 GN=Csa_4G056810 PE=4 SV=1)

HSP 1 Score: 128.3 bits (321), Expect = 7.0e-27
Identity = 69/69 (100.00%), Postives = 69/69 (100.00%), Query Frame = 0


Query: 1  MDGLQEMGIPMLGIVAAAAITFYAVSFSELREKSFKDLDELEDQKGGFQMTSSSRERRAR 60
          MDGLQEMGIPMLGIVAAAAITFYAVSFSELREKSFKDLDELEDQKGGFQMTSSSRERRAR
Sbjct: 1  MDGLQEMGIPMLGIVAAAAITFYAVSFSELREKSFKDLDELEDQKGGFQMTSSSRERRAR 60

Query: 61 RKAEKEAKR 70
          RKAEKEAKR
Sbjct: 61 RKAEKEAKR 69

[Close]

BLAST of CsaV3_4G007340 vs. TrEMBL
Match: tr|A0A1S3BRZ5|A0A1S3BRZ5_CUCME (uncharacterized protein LOC103493052 OS=Cucumis melo OX=3656 GN=LOC103493052 PE=4 SV=1)

HSP 1 Score: 126.7 bits (317), Expect = 2.0e-26
Identity = 68/69 (98.55%), Postives = 69/69 (100.00%), Query Frame = 0


Query: 1  MDGLQEMGIPMLGIVAAAAITFYAVSFSELREKSFKDLDELEDQKGGFQMTSSSRERRAR 60
          MDGLQEMGIP+LGIVAAAAITFYAVSFSELREKSFKDLDELEDQKGGFQMTSSSRERRAR
Sbjct: 1  MDGLQEMGIPILGIVAAAAITFYAVSFSELREKSFKDLDELEDQKGGFQMTSSSRERRAR 60

Query: 61 RKAEKEAKR 70
          RKAEKEAKR
Sbjct: 61 RKAEKEAKR 69

[Close]

BLAST of CsaV3_4G007340 vs. TrEMBL
Match: tr|V4UTQ1|V4UTQ1_9ROSI (Uncharacterized protein OS=Citrus clementina OX=85681 GN=CICLE_v10013268mg PE=4 SV=1)

HSP 1 Score: 94.0 bits (232), Expect = 1.5e-16
Identity = 51/70 (72.86%), Postives = 63/70 (90.00%), Query Frame = 0


Query: 1  MDGLQEMGIPMLGIVAAAAITFYAVSFSELREKSFKDL-DELEDQK-GGFQMTSSSRERR 60
          MDG+ +MG+P+LGIVAAAA+TFYAVSF+ELREKSF+DL DE ED+  GGFQ + SSRERR
Sbjct: 1  MDGMMQMGLPVLGIVAAAAVTFYAVSFAELREKSFRDLDDESEDENGGGFQKSLSSRERR 60

Query: 61 ARRKAEKEAK 69
          +RRKA+K+AK
Sbjct: 61 SRRKADKQAK 70

[Close]

BLAST of CsaV3_4G007340 vs. TrEMBL
Match: tr|A0A2H5MWX0|A0A2H5MWX0_CITUN (Uncharacterized protein OS=Citrus unshiu OX=55188 GN=CUMW_002670 PE=4 SV=1)

HSP 1 Score: 94.0 bits (232), Expect = 1.5e-16
Identity = 51/70 (72.86%), Postives = 63/70 (90.00%), Query Frame = 0


Query: 1  MDGLQEMGIPMLGIVAAAAITFYAVSFSELREKSFKDL-DELEDQK-GGFQMTSSSRERR 60
          MDG+ +MG+P+LGIVAAAA+TFYAVSF+ELREKSF+DL DE ED+  GGFQ + SSRERR
Sbjct: 1  MDGMMQMGLPVLGIVAAAAVTFYAVSFAELREKSFRDLDDESEDENGGGFQKSLSSRERR 60

Query: 61 ARRKAEKEAK 69
          +RRKA+K+AK
Sbjct: 61 SRRKADKQAK 70

[Close]

BLAST of CsaV3_4G007340 vs. TrEMBL
Match: tr|A0A067FLP3|A0A067FLP3_CITSI (Uncharacterized protein OS=Citrus sinensis OX=2711 GN=CISIN_1g035171mg PE=4 SV=1)

HSP 1 Score: 94.0 bits (232), Expect = 1.5e-16
Identity = 51/70 (72.86%), Postives = 63/70 (90.00%), Query Frame = 0


Query: 1  MDGLQEMGIPMLGIVAAAAITFYAVSFSELREKSFKDL-DELEDQK-GGFQMTSSSRERR 60
          MDG+ +MG+P+LGIVAAAA+TFYAVSF+ELREKSF+DL DE ED+  GGFQ + SSRERR
Sbjct: 1  MDGMMQMGLPVLGIVAAAAVTFYAVSFAELREKSFRDLDDESEDENGGGFQKSLSSRERR 60

Query: 61 ARRKAEKEAK 69
          +RRKA+K+AK
Sbjct: 61 SRRKADKQAK 70

The following BLAST results are available for this feature:

BLAST of CsaV3_4G007340 vs. NCBI nr


Match Name	E-value	Identity	Description
XP_004147735.1	1.1e-26	100.00	PREDICTED: uncharacterized protein LOC101211279 [Cucumis sativus] >XP_011653258....	[more]
XP_008451897.1	3.1e-26	98.55	PREDICTED: uncharacterized protein LOC103493052 [Cucumis melo] >XP_008451898.1 P...	[more]
XP_022136426.1	4.1e-23	88.41	uncharacterized protein LOC111008135 [Momordica charantia]	[more]
XP_023545078.1	2.3e-21	81.16	uncharacterized protein LOC111804483 [Cucurbita pepo subsp. pepo]	[more]
XP_022983590.1	6.6e-21	81.16	uncharacterized protein LOC111482149 [Cucurbita maxima]	[more]

BLAST of CsaV3_4G007340 vs. TAIR10


Match Name	E-value	Identity	Description
AT3G22210.1	1.1e-12	53.03	unknown protein	[more]

BLAST of CsaV3_4G007340 vs. Swiss-Prot


Match Name	E-value	Identity	Description

BLAST of CsaV3_4G007340 vs. TrEMBL


Match Name	E-value	Identity	Description
tr\|A0A0A0KVD4\|A0A0A0KVD4_CUCSA	7.0e-27	100.00	Uncharacterized protein OS=Cucumis sativus OX=3659 GN=Csa_4G056810 PE=4 SV=1	[more]
tr\|A0A1S3BRZ5\|A0A1S3BRZ5_CUCME	2.0e-26	98.55	uncharacterized protein LOC103493052 OS=Cucumis melo OX=3656 GN=LOC103493052 PE=...	[more]
tr\|V4UTQ1\|V4UTQ1_9ROSI	1.5e-16	72.86	Uncharacterized protein OS=Citrus clementina OX=85681 GN=CICLE_v10013268mg PE=4 ...	[more]
tr\|A0A2H5MWX0\|A0A2H5MWX0_CITUN	1.5e-16	72.86	Uncharacterized protein OS=Citrus unshiu OX=55188 GN=CUMW_002670 PE=4 SV=1	[more]
tr\|A0A067FLP3\|A0A067FLP3_CITSI	1.5e-16	72.86	Uncharacterized protein OS=Citrus sinensis OX=2711 GN=CISIN_1g035171mg PE=4 SV=1	[more]

GO Annotation

GO Assignments

This gene is annotated with the following GO terms.

Category	Term Accession	Term Name
biological_process	GO:0008150	biological_process
biological_process	GO:0000023	maltose metabolic process
biological_process	GO:0006098	pentose-phosphate shunt
biological_process	GO:0019252	starch biosynthetic process
cellular_component	GO:0005575	cellular_component
molecular_function	GO:0003674	molecular_function

Relationships

The following mRNA feature(s) are a part of this gene:


Feature Name	Unique Name	Type
CsaV3_4G007340.1	CsaV3_4G007340.1	mRNA

InterPro

Analysis Name: InterPro Annotations of cucumber chineselong genome (v3)
Date Performed: 2019-03-04


IPR Term	IPR Description	Source	Source Term	Source Description	Alignment
None	No IPR available	MOBIDB_LITE	mobidb-lite	disorder_prediction	coord: 44..69
None	No IPR available	MOBIDB_LITE	mobidb-lite	disorder_prediction	coord: 54..69
None	No IPR available	PANTHER	PTHR37225	FAMILY NOT NAMED	coord: 1..68

Synteny

The following gene(s) are orthologous to this gene:


Gene	Orthologue	Organism	Block
CsaV3_4G007340	CSPI04G07120	Wild cucumber (PI 183967)	cpicucB213
CsaV3_4G007340	Cucsa.180060	Cucumber (Gy14) v1	cgycucB289
CsaV3_4G007340	CmaCh04G006120	Cucurbita maxima (Rimu)	cmacucB0841
CsaV3_4G007340	MELO3C016236	Melon (DHL92) v3.5.1	cucmeB300
CsaV3_4G007340	MELO3C016236.2	Melon (DHL92) v3.6.1	cucmedB292
CsaV3_4G007340	Bhi01G002378	Wax gourd	cucwgoB370

The following gene(s) are paralogous to this gene:

None

The following block(s) are covering this gene:


Gene	Organism	Block
CsaV3_4G007340	Silver-seed gourd	carcucB0052
CsaV3_4G007340	Silver-seed gourd	carcucB0689
CsaV3_4G007340	Cucumber (Gy14) v2	cgybcucB171
CsaV3_4G007340	Cucumber (Gy14) v2	cgybcucB176
CsaV3_4G007340	Cucurbita maxima (Rimu)	cmacucB0393
CsaV3_4G007340	Cucurbita moschata (Rifu)	cmocucB0388
CsaV3_4G007340	Cucurbita moschata (Rifu)	cmocucB0560
CsaV3_4G007340	Cucurbita moschata (Rifu)	cmocucB0827
CsaV3_4G007340	Cucurbita pepo (Zucchini)	cpecucB0266
CsaV3_4G007340	Cucurbita pepo (Zucchini)	cpecucB0496
CsaV3_4G007340	Wild cucumber (PI 183967)	cpicucB226
CsaV3_4G007340	Bottle gourd (USVL1VR-Ls)	cuclsiB317
CsaV3_4G007340	Bottle gourd (USVL1VR-Ls)	cuclsiB323
CsaV3_4G007340	Watermelon (Charleston Gray)	cucwcgB295
CsaV3_4G007340	Watermelon (Charleston Gray)	cucwcgB343
CsaV3_4G007340	Watermelon (97103) v1	cucwmB323
CsaV3_4G007340	Watermelon (97103) v2	cucwmbB329
CsaV3_4G007340	Cucumber (Chinese Long) v3	cuccucB166