CmaCh01G003930 (gene) Cucurbita maxima (Rimu) | Cucurbit Genomics Database (CuGenDB)

Overview


Name	CmaCh01G003930
Type	gene
Organism	Cucurbita maxima (Cucurbita maxima (Rimu))
Description	Cycloidea-like protein group 1A
Location	Cma_Chr01 : 1986019 .. 1987020 (-)

Genome Viewer

Gene Expression

Sequences

The following sequences are available for this feature:

Gene sequence (with intron)

Legend: CDSexon

Hold the cursor over a type above to highlight its positions in the sequence below.

ATGGGTTCTTCAAGCTATAATCTCAACCCTTTTCCTTACTTTCCTTCTCCTTCCACTGCTTCCTATAATCTCCCTCTCTCAATTCCTTCACTTCTCAACTCTGAGCCAACAGCCACAACTTTCAATTTCCATCAACCCCACCAAGATCCTGTCTCTTTTTTGGCTCCCTATCTTCCCATTGGCCACTTCTCGACGTCCACAACACCGGAGGCCGTGATCAATTTTGCGGTGGCGGGGAGCAACGTTCAAGCTTTTGGCAACATTCCGAGTGCTTCTGGGGCGAGAATGGGGTCGGGGAAGAAGGACCGACATAGCAAGATTTACACGGCTCAAGGTTTACGGGATCGGAGAGTGAGATTGTCCATTGACATAGCTCGTAAGTTCTTTGATTTGCAAGACATGTTAGGGTATGACAAAGCAAGCAAAACCCTAGAGTGGCTTTTTAGCAAATCCAAAAAAGCAATTAAAGAGCTTTCAAGGACCAAATATGGAAATTTTGAGGTTGTTGGTGGAGCTAGAAGAATGTCTTTGGCTTCAGATGTTGAAGAAGAAGAGGAAATGACTAATAAAGTTGAAGTTTTTAATCTTCTTGCTAAACAATCAAGAGCCAAGGCTAAGGAGAAGAAGCAAGTGGATGATGAAAACGGTGACGACGACGACGGAAAAATCGACGTTCATGGCGGTGAAACTTCAAATCTATCAATGGAGGAATCCTCGTTCATGAACAAGAGAAAACTTTATGCGAAAAAGTTCATCGAGGACGATGAGATGAAATTGTGCCGAGATAACGATGCCGAAGCCTCTCAATGGAAGTTTTTGGATCAAATGAAGGCCTCAAAAGGGCATCTCCAAGAACCCTCCATGATCAAGAGGAAATGGAAGCCTTCCATTATTTCTGGTTCTTCACAGAGAAATCTCCTCATTTCCATTGATGGCATTCCTATAAACTTAACTCAAAATTGGGAGGGCAATAGCAACCCCAATTATCCATTTCCCAAGTAA

mRNA sequence

ATGGGTTCTTCAAGCTATAATCTCAACCCTTTTCCTTACTTTCCTTCTCCTTCCACTGCTTCCTATAATCTCCCTCTCTCAATTCCTTCACTTCTCAACTCTGAGCCAACAGCCACAACTTTCAATTTCCATCAACCCCACCAAGATCCTGTCTCTTTTTTGGCTCCCTATCTTCCCATTGGCCACTTCTCGACGTCCACAACACCGGAGGCCGTGATCAATTTTGCGGTGGCGGGGAGCAACGTTCAAGCTTTTGGCAACATTCCGAGTGCTTCTGGGGCGAGAATGGGGTCGGGGAAGAAGGACCGACATAGCAAGATTTACACGGCTCAAGGTTTACGGGATCGGAGAGTGAGATTGTCCATTGACATAGCTCGTAAGTTCTTTGATTTGCAAGACATGTTAGGGTATGACAAAGCAAGCAAAACCCTAGAGTGGCTTTTTAGCAAATCCAAAAAAGCAATTAAAGAGCTTTCAAGGACCAAATATGGAAATTTTGAGGTTGTTGGTGGAGCTAGAAGAATGTCTTTGGCTTCAGATGTTGAAGAAGAAGAGGAAATGACTAATAAAGTTGAAGTTTTTAATCTTCTTGCTAAACAATCAAGAGCCAAGGCTAAGGAGAAGAAGCAAGTGGATGATGAAAACGGTGACGACGACGACGGAAAAATCGACGTTCATGGCGGTGAAACTTCAAATCTATCAATGGAGGAATCCTCGTTCATGAACAAGAGAAAACTTTATGCGAAAAAGTTCATCGAGGACGATGAGATGAAATTGTGCCGAGATAACGATGCCGAAGCCTCTCAATGGAAGTTTTTGGATCAAATGAAGGCCTCAAAAGGGCATCTCCAAGAACCCTCCATGATCAAGAGGAAATGGAAGCCTTCCATTATTTCTGGTTCTTCACAGAGAAATCTCCTCATTTCCATTGATGGCATTCCTATAAACTTAACTCAAAATTGGGAGGGCAATAGCAACCCCAATTATCCATTTCCCAAGTAA

Coding sequence (CDS)

ATGGGTTCTTCAAGCTATAATCTCAACCCTTTTCCTTACTTTCCTTCTCCTTCCACTGCTTCCTATAATCTCCCTCTCTCAATTCCTTCACTTCTCAACTCTGAGCCAACAGCCACAACTTTCAATTTCCATCAACCCCACCAAGATCCTGTCTCTTTTTTGGCTCCCTATCTTCCCATTGGCCACTTCTCGACGTCCACAACACCGGAGGCCGTGATCAATTTTGCGGTGGCGGGGAGCAACGTTCAAGCTTTTGGCAACATTCCGAGTGCTTCTGGGGCGAGAATGGGGTCGGGGAAGAAGGACCGACATAGCAAGATTTACACGGCTCAAGGTTTACGGGATCGGAGAGTGAGATTGTCCATTGACATAGCTCGTAAGTTCTTTGATTTGCAAGACATGTTAGGGTATGACAAAGCAAGCAAAACCCTAGAGTGGCTTTTTAGCAAATCCAAAAAAGCAATTAAAGAGCTTTCAAGGACCAAATATGGAAATTTTGAGGTTGTTGGTGGAGCTAGAAGAATGTCTTTGGCTTCAGATGTTGAAGAAGAAGAGGAAATGACTAATAAAGTTGAAGTTTTTAATCTTCTTGCTAAACAATCAAGAGCCAAGGCTAAGGAGAAGAAGCAAGTGGATGATGAAAACGGTGACGACGACGACGGAAAAATCGACGTTCATGGCGGTGAAACTTCAAATCTATCAATGGAGGAATCCTCGTTCATGAACAAGAGAAAACTTTATGCGAAAAAGTTCATCGAGGACGATGAGATGAAATTGTGCCGAGATAACGATGCCGAAGCCTCTCAATGGAAGTTTTTGGATCAAATGAAGGCCTCAAAAGGGCATCTCCAAGAACCCTCCATGATCAAGAGGAAATGGAAGCCTTCCATTATTTCTGGTTCTTCACAGAGAAATCTCCTCATTTCCATTGATGGCATTCCTATAAACTTAACTCAAAATTGGGAGGGCAATAGCAACCCCAATTATCCATTTCCCAAGTAA

Protein sequence

MGSSSYNLNPFPYFPSPSTASYNLPLSIPSLLNSEPTATTFNFHQPHQDPVSFLAPYLPIGHFSTSTTPEAVINFAVAGSNVQAFGNIPSASGARMGSGKKDRHSKIYTAQGLRDRRVRLSIDIARKFFDLQDMLGYDKASKTLEWLFSKSKKAIKELSRTKYGNFEVVGGARRMSLASDVEEEEEMTNKVEVFNLLAKQSRAKAKEKKQVDDENGDDDDGKIDVHGGETSNLSMEESSFMNKRKLYAKKFIEDDEMKLCRDNDAEASQWKFLDQMKASKGHLQEPSMIKRKWKPSIISGSSQRNLLISIDGIPINLTQNWEGNSNPNYPFPK

Homology

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BLAST of CmaCh01G003930 vs. Swiss-Prot
Match: TCP1_ARATH (Transcription factor TCP1 OS=Arabidopsis thaliana GN=TCP1 PE=1 SV=1)

HSP 1 Score: 109.4 bits (272), Expect = 7.8e-23
Identity = 72/135 (53.33%), Postives = 85/135 (62.96%), Query Frame = 1


Query: 61  GHFSTSTTPEAVINFAVAGSN----VQAFGNIPSASGARMGSGKKDRHSKIYTAQGLRDR 120
           GH   S  PE++I++    SN     Q F   P  S       KKDRHSKI TAQG+RDR
Sbjct: 46  GHM-VSAVPESLIDYMAFKSNNVVNQQGF-EFPEVSKEIKKVVKKDRHSKIQTAQGIRDR 105

Query: 121 RVRLSIDIARKFFDLQDMLGYDKASKTLEWLFSKSKKAIKELSRTKYGN-----FEVVGG 180
           RVRLSI IAR+FFDLQDMLG+DKASKTL+WL  KS+KAIKE+ + K  N     F  +GG
Sbjct: 106 RVRLSIGIARQFFDLQDMLGFDKASKTLDWLLKKSRKAIKEVVQAKNLNNDDEDFGNIGG 165

Query: 181 ARRMSLASDVEEEEE 187
                   DVE+EEE
Sbjct: 166 --------DVEQEEE 170

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BLAST of CmaCh01G003930 vs. Swiss-Prot
Match: TCP12_ARATH (Transcription factor TCP12 OS=Arabidopsis thaliana GN=TCP12 PE=2 SV=1)

HSP 1 Score: 102.8 bits (255), Expect = 7.3e-21
Identity = 62/113 (54.87%), Postives = 78/113 (69.03%), Query Frame = 1


Query: 100 KKDRHSKIYTAQGLRDRRVRLSIDIARKFFDLQDMLGYDKASKTLEWLFSKSKKAIKELS 159
           K+DRHSKI TAQG RDRR+RLS+ IARKFFDLQDMLG+DKASKT+EWLFSKSK +IK+L 
Sbjct: 112 KRDRHSKICTAQGPRDRRMRLSLQIARKFFDLQDMLGFDKASKTIEWLFSKSKTSIKQLK 171

Query: 160 RTKYGNFEVVGGARRMSLASDVEEEEEMTNKVEVFNLLAK--QSRAKAKEKKQ 211
                +    GG +   L  D E+E++ T K+ V     K  +S  K KE ++
Sbjct: 172 ERVAAS---EGGGKDEHLQVD-EKEKDETLKLRVSKRRTKTMESSFKTKESRE 220

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BLAST of CmaCh01G003930 vs. Swiss-Prot
Match: CYCLD_ANTMA (Transcription factor CYCLOIDEA OS=Antirrhinum majus GN=CYC PE=1 SV=1)

HSP 1 Score: 99.8 bits (247), Expect = 6.1e-20
Identity = 67/159 (42.14%), Postives = 90/159 (56.60%), Query Frame = 1


Query: 61  GHFSTSTTPEAVINFAVAGSN-------VQAFGNIPSASGARMGSGKKDRHSKIYTAQGL 120
           GH+ T+     + + A+  +N       V      PS +     + KKDRHSKIYT+QG 
Sbjct: 41  GHYLTTANAPVLESTALFNNNNNFNHDVVNGLNRDPSPTFPTKQAVKKDRHSKIYTSQGP 100

Query: 121 RDRRVRLSIDIARKFFDLQDMLGYDKASKTLEWLFSKSKKAIKELSRTKYGNFEVVGGAR 180
           RDRRVRLSI IARKFFDLQ+MLG+DK SKTL+WL +KSK AIKEL ++K         + 
Sbjct: 101 RDRRVRLSIGIARKFFDLQEMLGFDKPSKTLDWLLTKSKTAIKELVQSKSTK------SN 160

Query: 181 RMSLASDVEEEEEMTNKVEVFNLLAKQSRAKAKEKKQVD 213
             S   D EE   + ++    +   K  +A  K K+ +D
Sbjct: 161 SSSPCDDCEEVVSVDSENVTDHSKGKSLKANNKCKEAMD 193

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BLAST of CmaCh01G003930 vs. Swiss-Prot
Match: CYCLD_ANTML (Transcription factor CYCLOIDEA (Fragment) OS=Antirrhinum majus subsp. linkianum GN=CYC PE=3 SV=1)

HSP 1 Score: 99.8 bits (247), Expect = 6.1e-20
Identity = 67/159 (42.14%), Postives = 90/159 (56.60%), Query Frame = 1


Query: 61  GHFSTSTTPEAVINFAVAGSN-------VQAFGNIPSASGARMGSGKKDRHSKIYTAQGL 120
           GH+ T+     + + A+  +N       V      PS +     + KKDRHSKIYT+QG 
Sbjct: 33  GHYLTTANAPVLESTALFNNNNNFNHDVVNGLNRDPSPTFPTKQAVKKDRHSKIYTSQGP 92

Query: 121 RDRRVRLSIDIARKFFDLQDMLGYDKASKTLEWLFSKSKKAIKELSRTKYGNFEVVGGAR 180
           RDRRVRLSI IARKFFDLQ+MLG+DK SKTL+WL +KSK AIKEL ++K         + 
Sbjct: 93  RDRRVRLSIGIARKFFDLQEMLGFDKPSKTLDWLLTKSKTAIKELVQSKSTK------SN 152

Query: 181 RMSLASDVEEEEEMTNKVEVFNLLAKQSRAKAKEKKQVD 213
             S   D EE   + ++    +   K  +A  K K+ +D
Sbjct: 153 SSSPCDDCEEVVSVDSENVTDHSKGKSLKANNKCKEAMD 185

[Close]

BLAST of CmaCh01G003930 vs. Swiss-Prot
Match: CYCLD_ANTMH (Transcription factor CYCLOIDEA (Fragment) OS=Antirrhinum majus subsp. cirrhigerum GN=CYC PE=3 SV=1)

HSP 1 Score: 99.4 bits (246), Expect = 8.0e-20
Identity = 66/159 (41.51%), Postives = 90/159 (56.60%), Query Frame = 1


Query: 61  GHFSTSTTPEAVINFAVAGSN-------VQAFGNIPSASGARMGSGKKDRHSKIYTAQGL 120
           GH+ T+     + + A+  +N       V      PS +     + KKDRHSKIYT+QG 
Sbjct: 33  GHYLTTANAPVLESTALFNNNNNFNHDVVNGLNRDPSPTFPTKQAVKKDRHSKIYTSQGP 92

Query: 121 RDRRVRLSIDIARKFFDLQDMLGYDKASKTLEWLFSKSKKAIKELSRTKYGNFEVVGGAR 180
           RDRRVRLSI IARKFFDLQ+MLG+DK SKTL+WL +KSK A+KEL ++K         + 
Sbjct: 93  RDRRVRLSIGIARKFFDLQEMLGFDKPSKTLDWLLTKSKTAVKELVQSKSTK------SN 152

Query: 181 RMSLASDVEEEEEMTNKVEVFNLLAKQSRAKAKEKKQVD 213
             S   D EE   + ++    +   K  +A  K K+ +D
Sbjct: 153 SSSPCDDCEEVVSVESENVTDHSKGKSLKANNKCKEAMD 185

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BLAST of CmaCh01G003930 vs. TrEMBL
Match: A0A0A0LCE8_CUCSA (Uncharacterized protein OS=Cucumis sativus GN=Csa_3G265270 PE=4 SV=1)

HSP 1 Score: 277.7 bits (709), Expect = 1.8e-71
Identity = 184/295 (62.37%), Postives = 198/295 (67.12%), Query Frame = 1


Query: 88  IPSASGA-RMGSGKKDRHSKIYTAQGLRDRRVRLSIDIARKFFDLQDMLGYDKASKTLEW 147
           IPSA GA   G GKKDRHSKIYTAQGLRDRRVRLSIDIARKFFDLQDMLGYDKASKTLEW
Sbjct: 3   IPSAPGAGTTGMGKKDRHSKIYTAQGLRDRRVRLSIDIARKFFDLQDMLGYDKASKTLEW 62

Query: 148 LFSKSKKAIKELSRTKYGNFEVVGGARRMSL---ASDVEEEEE----------------- 207
           LFSKSKKAIKELSRTK GN  V GGA++ SL   +SDVEEE +                 
Sbjct: 63  LFSKSKKAIKELSRTKSGNLGVHGGAKKFSLVADSSDVEEEYDDDKEGWELKMKSMLSID 122

Query: 208 -----MTNKVEVFNLLAKQSRAKAK--------EKKQVDDEN--GDDDDGKIDV------ 267
                   KVE FNLLAK+SRAKA+        EKKQVD+    G    G  +V      
Sbjct: 123 EQEKVSKEKVEGFNLLAKESRAKARARARERTMEKKQVDNRKVYGHQKGGAQEVSNHWSK 182

Query: 268 ---HGGETSNLSMEESSFMNKRK-LYAKKFIEDDEM--KLCRDND-AEASQWKFLDQMKA 327
              H  ETSNLSMEESSF+NKRK +Y+KKFI  D    K  RD++ AE SQ K LDQMKA
Sbjct: 183 HLNHSTETSNLSMEESSFINKRKIIYSKKFINHDNYSDKSRRDDENAETSQRKLLDQMKA 242

Query: 328 SKGHLQEPSMIKRKWKPSIISGSSQRNLLISIDGIPINLTQNWEGNSNPNYPFPK 334
           S          KRKWKPSIISGSSQRN LISIDGIPINLTQN + NSNPNYP  K
Sbjct: 243 S----------KRKWKPSIISGSSQRNFLISIDGIPINLTQNLDTNSNPNYPIAK 287

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BLAST of CmaCh01G003930 vs. TrEMBL
Match: Q19CB1_LUPAN (Cycloidea-like protein group 1A (Fragment) OS=Lupinus angustifolius GN=LEGCYC1A PE=4 SV=1)

HSP 1 Score: 142.1 bits (357), Expect = 1.2e-30
Identity = 87/166 (52.41%), Postives = 108/166 (65.06%), Query Frame = 1


Query: 10  PFPYFPSPSTASYNLPLSIPSLLNSEPTATTFNFHQPHQDPVSFLAPY-LPIGHFSTSTT 69
           P+PYFPS S++ +      P   +S  T +         DP SF  PY +P  H   +  
Sbjct: 4   PYPYFPSSSSSYHPFAFFNPENASSNNTFS--------HDPFSF--PYNMPNTHHYHAPN 63

Query: 70  PEAVINFAVAGSNVQAFGNIPSASG--ARMGSGKKDRHSKIYTAQGLRDRRVRLSIDIAR 129
           PE V NFA  G++   F N  S S   A+  + KKDRHSKIYT+QGLRDRRVRLSI+IAR
Sbjct: 64  PETVANFADCGASAAMFKNDVSGSNFMAKKPAPKKDRHSKIYTSQGLRDRRVRLSIEIAR 123

Query: 130 KFFDLQDMLGYDKASKTLEWLFSKSKKAIKELSRTKYGNFEVVGGA 173
           KFFDLQDMLG+DKAS TLEWLF+KSKKA+KEL+R+K  +  VV  +
Sbjct: 124 KFFDLQDMLGFDKASNTLEWLFNKSKKAMKELARSKNSSSGVVANS 159

[Close]

BLAST of CmaCh01G003930 vs. TrEMBL
Match: Q6VM26_LUPCO (Cycloidea-like protein group 1A (Fragment) OS=Lupinus cosentinii PE=4 SV=1)

HSP 1 Score: 138.7 bits (348), Expect = 1.3e-29
Identity = 109/260 (41.92%), Postives = 139/260 (53.46%), Query Frame = 1


Query: 3   SSSY-NLNPFPYFPSPSTASYNLPLSIPSLLNSEPTATTFNFHQPHQDPVSFLAPY-LPI 62
           SS+Y +  P+PYFPS S++ +      P   +S  T +         DP+SF  PY +P 
Sbjct: 1   SSTYISSGPYPYFPSSSSSYHPFAFFNPENGSSNNTFS--------HDPLSF--PYNMPT 60

Query: 63  GHFSTSTTPEAVINFAVAGSNVQAFGNIPSASG-------ARMGSGKKDRHSKIYTAQGL 122
            H   +  PE V NF   G +   F N  S S        A+  + KKDRHSKIYT+QGL
Sbjct: 61  THHFHAPIPETVANFVDCGGSAAMFKNDVSGSNFGFSNFMAKKPAPKKDRHSKIYTSQGL 120

Query: 123 RDRRVRLSIDIARKFFDLQDMLGYDKASKTLEWLFSKSKKAIKELSRTKYGNFEVVGGAR 182
           RDRRVRLSI+IARKFFDLQDMLG+DKAS TLEWLF+KSKKA+KEL+R+K  +  VV  A 
Sbjct: 121 RDRRVRLSIEIARKFFDLQDMLGFDKASNTLEWLFNKSKKAMKELARSKNSSSGVV--AN 180

Query: 183 RMSLASDVEEEEEMTNK---------VEVFNLLAKQSRAKAKEKKQVDDENGDDDDGKID 242
             S +    E   M N+         V V +   K  RAK KE ++           K  
Sbjct: 181 SFSSSDSECEVVSMINQDSIDATPEGVVVDSKERKLKRAKIKESRE-----------KAR 237

Query: 243 VHGGETSNLSMEESSFMNKR 245
               E +N  M  +S M K+
Sbjct: 241 ARARERTNKKMFNTSIMKKK 237

[Close]

BLAST of CmaCh01G003930 vs. TrEMBL
Match: E2DID3_9FABA (Cycloidea-like protein group 1A (Fragment) OS=Lupinus mariae-josephae GN=LEGCYC1A PE=4 SV=1)

HSP 1 Score: 138.3 bits (347), Expect = 1.7e-29
Identity = 86/171 (50.29%), Postives = 107/171 (62.57%), Query Frame = 1


Query: 10  PFPYFPSPSTASYNLPLSIPSLLNSEPTATTFNFHQPHQDPVSFLAPY-LPIGHFSTSTT 69
           P+PYFPS S++ +      P   +S  T +         DP SF  PY +P  H   +  
Sbjct: 6   PYPYFPSSSSSYHPFAFFNPENASSNNTFS--------HDPFSF--PYNMPNTHHYHAPI 65

Query: 70  PEAVINFAVAGSNVQAFGNIPSASG-------ARMGSGKKDRHSKIYTAQGLRDRRVRLS 129
           PE V NFA  G++   F N  S S         +  + KKDRHSKIYT+QGLRDRRVRLS
Sbjct: 66  PETVANFADCGASAAMFKNDVSGSNFGFNNFLTKKPAPKKDRHSKIYTSQGLRDRRVRLS 125

Query: 130 IDIARKFFDLQDMLGYDKASKTLEWLFSKSKKAIKELSRTKYGNFEVVGGA 173
           I+IARKFFDLQDMLG+DKAS TLEWLF+KSKKA+KEL+R+K  +  VV  +
Sbjct: 126 IEIARKFFDLQDMLGFDKASNTLEWLFNKSKKAMKELARSKNSSSGVVANS 166

[Close]

BLAST of CmaCh01G003930 vs. TrEMBL
Match: E2DID4_9FABA (Cycloidea-like protein group 1A (Fragment) OS=Lupinus mariae-josephae GN=LEGCYC1A PE=4 SV=1)

HSP 1 Score: 138.3 bits (347), Expect = 1.7e-29
Identity = 86/171 (50.29%), Postives = 107/171 (62.57%), Query Frame = 1


Query: 10  PFPYFPSPSTASYNLPLSIPSLLNSEPTATTFNFHQPHQDPVSFLAPY-LPIGHFSTSTT 69
           P+PYFPS S++ +      P   +S  T +         DP SF  PY +P  H   +  
Sbjct: 5   PYPYFPSSSSSYHPFAFFNPENASSNNTFS--------HDPFSF--PYNMPNTHHYHAPI 64

Query: 70  PEAVINFAVAGSNVQAFGNIPSASG-------ARMGSGKKDRHSKIYTAQGLRDRRVRLS 129
           PE V NFA  G++   F N  S S         +  + KKDRHSKIYT+QGLRDRRVRLS
Sbjct: 65  PETVANFADCGASAAMFKNDVSGSNFGFNNFLTKKPAPKKDRHSKIYTSQGLRDRRVRLS 124

Query: 130 IDIARKFFDLQDMLGYDKASKTLEWLFSKSKKAIKELSRTKYGNFEVVGGA 173
           I+IARKFFDLQDMLG+DKAS TLEWLF+KSKKA+KEL+R+K  +  VV  +
Sbjct: 125 IEIARKFFDLQDMLGFDKASNTLEWLFNKSKKAMKELARSKNSSSGVVANS 165

[Close]

BLAST of CmaCh01G003930 vs. TAIR10
Match: AT1G67260.1 (AT1G67260.1 TCP family transcription factor )

HSP 1 Score: 109.4 bits (272), Expect = 4.4e-24
Identity = 72/135 (53.33%), Postives = 85/135 (62.96%), Query Frame = 1


Query: 61  GHFSTSTTPEAVINFAVAGSN----VQAFGNIPSASGARMGSGKKDRHSKIYTAQGLRDR 120
           GH   S  PE++I++    SN     Q F   P  S       KKDRHSKI TAQG+RDR
Sbjct: 46  GHM-VSAVPESLIDYMAFKSNNVVNQQGF-EFPEVSKEIKKVVKKDRHSKIQTAQGIRDR 105

Query: 121 RVRLSIDIARKFFDLQDMLGYDKASKTLEWLFSKSKKAIKELSRTKYGN-----FEVVGG 180
           RVRLSI IAR+FFDLQDMLG+DKASKTL+WL  KS+KAIKE+ + K  N     F  +GG
Sbjct: 106 RVRLSIGIARQFFDLQDMLGFDKASKTLDWLLKKSRKAIKEVVQAKNLNNDDEDFGNIGG 165

Query: 181 ARRMSLASDVEEEEE 187
                   DVE+EEE
Sbjct: 166 --------DVEQEEE 170

[Close]

BLAST of CmaCh01G003930 vs. TAIR10
Match: AT1G68800.1 (AT1G68800.1 TCP domain protein 12)

HSP 1 Score: 102.8 bits (255), Expect = 4.1e-22
Identity = 62/113 (54.87%), Postives = 78/113 (69.03%), Query Frame = 1


Query: 100 KKDRHSKIYTAQGLRDRRVRLSIDIARKFFDLQDMLGYDKASKTLEWLFSKSKKAIKELS 159
           K+DRHSKI TAQG RDRR+RLS+ IARKFFDLQDMLG+DKASKT+EWLFSKSK +IK+L 
Sbjct: 112 KRDRHSKICTAQGPRDRRMRLSLQIARKFFDLQDMLGFDKASKTIEWLFSKSKTSIKQLK 171

Query: 160 RTKYGNFEVVGGARRMSLASDVEEEEEMTNKVEVFNLLAK--QSRAKAKEKKQ 211
                +    GG +   L  D E+E++ T K+ V     K  +S  K KE ++
Sbjct: 172 ERVAAS---EGGGKDEHLQVD-EKEKDETLKLRVSKRRTKTMESSFKTKESRE 220

[Close]

BLAST of CmaCh01G003930 vs. TAIR10
Match: AT3G18550.1 (AT3G18550.1 TCP family transcription factor )

HSP 1 Score: 81.3 bits (199), Expect = 1.3e-15
Identity = 45/99 (45.45%), Postives = 64/99 (64.65%), Query Frame = 1


Query: 67  TTPEAVINFAVAGSNVQAFGNIPSASGARMGSGKK----DRHSKIYTAQGLRDRRVRLSI 126
           T P   IN       ++    I ++   +M   KK    DRHSKI TA+G RDRR+RLS+
Sbjct: 117 TEPSETINL------IEDSQRISTSQDPKMKKAKKPSRTDRHSKIKTAKGTRDRRMRLSL 176

Query: 127 DIARKFFDLQDMLGYDKASKTLEWLFSKSKKAIKELSRT 162
           D+A++ F LQDMLG+DKASKT+EWL +++K  I +++ T
Sbjct: 177 DVAKELFGLQDMLGFDKASKTVEWLLTQAKPEIIKIATT 209

[Close]

BLAST of CmaCh01G003930 vs. TAIR10
Match: AT2G31070.1 (AT2G31070.1 TCP domain protein 10)

HSP 1 Score: 77.4 bits (189), Expect = 1.8e-14
Identity = 38/75 (50.67%), Postives = 53/75 (70.67%), Query Frame = 1


Query: 86  GNIPSASGARM--GSGKKDRHSKIYTAQGLRDRRVRLSIDIARKFFDLQDMLGYDKASKT 145
           G I    G  +   +G+KDRHSK++T++G RDRRVRLS   A +F+D+QD LGYD+ SK 
Sbjct: 13  GEIVEVQGGHIIRATGRKDRHSKVFTSKGPRDRRVRLSAHTAIQFYDVQDRLGYDRPSKA 72

Query: 146 LEWLFSKSKKAIKEL 159
           ++WL  K+K AI +L
Sbjct: 73  VDWLIKKAKTAIDKL 87

[Close]

BLAST of CmaCh01G003930 vs. TAIR10
Match: AT4G18390.1 (AT4G18390.1 TEOSINTE BRANCHED 1, cycloidea and PCF transcription factor 2)

HSP 1 Score: 77.4 bits (189), Expect = 1.8e-14
Identity = 36/61 (59.02%), Postives = 47/61 (77.05%), Query Frame = 1


Query: 98  SGKKDRHSKIYTAQGLRDRRVRLSIDIARKFFDLQDMLGYDKASKTLEWLFSKSKKAIKE 157
           SG KDRHSK+ T++G RDRRVRLS+  A +F+DLQD LGYD+ SK +EWL   ++ +I E
Sbjct: 40  SGGKDRHSKVLTSKGPRDRRVRLSVSTALQFYDLQDRLGYDQPSKAVEWLIKAAEDSISE 99

Query: 158 L 159
           L
Sbjct: 100 L 100

[Close]

BLAST of CmaCh01G003930 vs. NCBI nr
Match: gi|778680634|ref|XP_011651364.1| (PREDICTED: transcription factor CYCLOIDEA [Cucumis sativus])

HSP 1 Score: 381.3 bits (978), Expect = 1.7e-102
Identity = 248/392 (63.27%), Postives = 272/392 (69.39%), Query Frame = 1


Query: 1   MGSSSYNLNPFPYFPSPS---TASYNLPLSIPSLLNSEPTAT---TFNFH-QPHQDPVSF 60
           MGSS+YNLNPF  FPS +   T SYNLP SIPSLLNS+P+++   T NFH QPHQDP+SF
Sbjct: 1   MGSSNYNLNPFHCFPSSTSSTTNSYNLPPSIPSLLNSDPSSSNTSTINFHHQPHQDPLSF 60

Query: 61  LAPYLPIGHFSTSTTPE-AVINFAVAGSNVQAFGN--IPSASGA-RMGSGKKDRHSKIYT 120
           LAPY PI HFS    PE AVINFAVAG+N+QA G+  IPSA GA   G GKKDRHSKIYT
Sbjct: 61  LAPYFPIAHFSALAPPETAVINFAVAGNNIQALGDMVIPSAPGAGTTGMGKKDRHSKIYT 120

Query: 121 AQGLRDRRVRLSIDIARKFFDLQDMLGYDKASKTLEWLFSKSKKAIKELSRTKYGNFEVV 180
           AQGLRDRRVRLSIDIARKFFDLQDMLGYDKASKTLEWLFSKSKKAIKELSRTK GN  V 
Sbjct: 121 AQGLRDRRVRLSIDIARKFFDLQDMLGYDKASKTLEWLFSKSKKAIKELSRTKSGNLGVH 180

Query: 181 GGARRMSL---ASDVEEEEE----------------------MTNKVEVFNLLAKQSRAK 240
           GGA++ SL   +SDVEEE +                         KVE FNLLAK+SRAK
Sbjct: 181 GGAKKFSLVADSSDVEEEYDDDKEGWELKMKSMLSIDEQEKVSKEKVEGFNLLAKESRAK 240

Query: 241 AK--------EKKQVDDEN--GDDDDGKIDV---------HGGETSNLSMEESSFMNKRK 300
           A+        EKKQVD+    G    G  +V         H  ETSNLSMEESSF+NKRK
Sbjct: 241 ARARARERTMEKKQVDNRKVYGHQKGGAQEVSNHWSKHLNHSTETSNLSMEESSFINKRK 300

Query: 301 -LYAKKFIEDDEM--KLCRDND-AEASQWKFLDQMKASKGHLQEPSMIKRKWKPSIISGS 334
            +Y+KKFI  D    K  RD++ AE SQ K LDQMKAS          KRKWKPSIISGS
Sbjct: 301 IIYSKKFINHDNYSDKSRRDDENAETSQRKLLDQMKAS----------KRKWKPSIISGS 360

[Close]

BLAST of CmaCh01G003930 vs. NCBI nr
Match: gi|659123314|ref|XP_008461599.1| (PREDICTED: transcription factor CYCLOIDEA, partial [Cucumis melo])

HSP 1 Score: 379.8 bits (974), Expect = 4.9e-102
Identity = 243/384 (63.28%), Postives = 270/384 (70.31%), Query Frame = 1


Query: 1   MGSSSYNLNPFPYFPSPS---TASYNLPLSIPSLLNSEPTA---TTFNFH-QPHQDPVSF 60
           MGSSSYN NPFP FPS S   T SYNLPLSIPSLLN +P++   +T NFH QPHQDP+SF
Sbjct: 1   MGSSSYNPNPFPCFPSSSSSTTNSYNLPLSIPSLLNFDPSSNNTSTVNFHHQPHQDPLSF 60

Query: 61  LAPYLPIGHFSTSTTPE-AVINFAVAGSNVQAFGN--IPSASGA-RMGSGKKDRHSKIYT 120
           LAPY PI HFST T PE AVINFAVAG+N+QA G+  +PSA GA   G GKKDRHSKIYT
Sbjct: 61  LAPYFPIAHFSTLTPPETAVINFAVAGNNIQALGDMVVPSAPGAGTTGMGKKDRHSKIYT 120

Query: 121 AQGLRDRRVRLSIDIARKFFDLQDMLGYDKASKTLEWLFSKSKKAIKELSRTKYGNFEVV 180
           AQGLRDRRVRLSIDIARKFFDLQDMLGYDKASKTLEWLFSKS+KAIKELSRTK   F   
Sbjct: 121 AQGLRDRRVRLSIDIARKFFDLQDMLGYDKASKTLEWLFSKSRKAIKELSRTKNVGFH-- 180

Query: 181 GGARRMSLA---SDVEEEEE---------------------MTNKVEVFNLLAKQSRAKA 240
           GGA+++SLA   SDVEEE +                        KVE+FNL+AK+SRAKA
Sbjct: 181 GGAKKLSLAAASSDVEEEYDDDKGWELKMKSMLRIDEQEKVSKEKVEIFNLVAKESRAKA 240

Query: 241 K--------EKKQVDDEN--GDDDDGKIDV---------HGGETSNLSMEESSFMNKRKL 300
           +        EKKQVDD    G    G  +V         H  ETSNLSMEESSFMNKRK+
Sbjct: 241 RARARERTMEKKQVDDSKVYGHQKGGAQEVSDHWSKHLNHSTETSNLSMEESSFMNKRKI 300

Query: 301 YAKKFIEDDE---MKLCRDND-AEASQWKFLDQMKASKGHLQEPSMIKRKWKPSIISGSS 327
           YAKKFI  D    +K CRD++ AE S WK LDQMKAS          KRKWKPSIISGSS
Sbjct: 301 YAKKFINHDNYTTVKSCRDDENAETSHWKLLDQMKAS----------KRKWKPSIISGSS 360

[Close]

BLAST of CmaCh01G003930 vs. NCBI nr
Match: gi|700202598|gb|KGN57731.1| (hypothetical protein Csa_3G265270 [Cucumis sativus])

HSP 1 Score: 277.7 bits (709), Expect = 2.6e-71
Identity = 184/295 (62.37%), Postives = 198/295 (67.12%), Query Frame = 1


Query: 88  IPSASGA-RMGSGKKDRHSKIYTAQGLRDRRVRLSIDIARKFFDLQDMLGYDKASKTLEW 147
           IPSA GA   G GKKDRHSKIYTAQGLRDRRVRLSIDIARKFFDLQDMLGYDKASKTLEW
Sbjct: 3   IPSAPGAGTTGMGKKDRHSKIYTAQGLRDRRVRLSIDIARKFFDLQDMLGYDKASKTLEW 62

Query: 148 LFSKSKKAIKELSRTKYGNFEVVGGARRMSL---ASDVEEEEE----------------- 207
           LFSKSKKAIKELSRTK GN  V GGA++ SL   +SDVEEE +                 
Sbjct: 63  LFSKSKKAIKELSRTKSGNLGVHGGAKKFSLVADSSDVEEEYDDDKEGWELKMKSMLSID 122

Query: 208 -----MTNKVEVFNLLAKQSRAKAK--------EKKQVDDEN--GDDDDGKIDV------ 267
                   KVE FNLLAK+SRAKA+        EKKQVD+    G    G  +V      
Sbjct: 123 EQEKVSKEKVEGFNLLAKESRAKARARARERTMEKKQVDNRKVYGHQKGGAQEVSNHWSK 182

Query: 268 ---HGGETSNLSMEESSFMNKRK-LYAKKFIEDDEM--KLCRDND-AEASQWKFLDQMKA 327
              H  ETSNLSMEESSF+NKRK +Y+KKFI  D    K  RD++ AE SQ K LDQMKA
Sbjct: 183 HLNHSTETSNLSMEESSFINKRKIIYSKKFINHDNYSDKSRRDDENAETSQRKLLDQMKA 242

Query: 328 SKGHLQEPSMIKRKWKPSIISGSSQRNLLISIDGIPINLTQNWEGNSNPNYPFPK 334
           S          KRKWKPSIISGSSQRN LISIDGIPINLTQN + NSNPNYP  K
Sbjct: 243 S----------KRKWKPSIISGSSQRNFLISIDGIPINLTQNLDTNSNPNYPIAK 287

[Close]

BLAST of CmaCh01G003930 vs. NCBI nr
Match: gi|106896606|gb|ABF82965.1| (cycloidea-like protein group 1A, partial [Lupinus angustifolius])

HSP 1 Score: 142.1 bits (357), Expect = 1.7e-30
Identity = 87/166 (52.41%), Postives = 108/166 (65.06%), Query Frame = 1


Query: 10  PFPYFPSPSTASYNLPLSIPSLLNSEPTATTFNFHQPHQDPVSFLAPY-LPIGHFSTSTT 69
           P+PYFPS S++ +      P   +S  T +         DP SF  PY +P  H   +  
Sbjct: 4   PYPYFPSSSSSYHPFAFFNPENASSNNTFS--------HDPFSF--PYNMPNTHHYHAPN 63

Query: 70  PEAVINFAVAGSNVQAFGNIPSASG--ARMGSGKKDRHSKIYTAQGLRDRRVRLSIDIAR 129
           PE V NFA  G++   F N  S S   A+  + KKDRHSKIYT+QGLRDRRVRLSI+IAR
Sbjct: 64  PETVANFADCGASAAMFKNDVSGSNFMAKKPAPKKDRHSKIYTSQGLRDRRVRLSIEIAR 123

Query: 130 KFFDLQDMLGYDKASKTLEWLFSKSKKAIKELSRTKYGNFEVVGGA 173
           KFFDLQDMLG+DKAS TLEWLF+KSKKA+KEL+R+K  +  VV  +
Sbjct: 124 KFFDLQDMLGFDKASNTLEWLFNKSKKAMKELARSKNSSSGVVANS 159

[Close]

BLAST of CmaCh01G003930 vs. NCBI nr
Match: gi|33591196|gb|AAQ23102.1| (cycloidea-like protein group 1A [Lupinus cosentinii])

HSP 1 Score: 138.7 bits (348), Expect = 1.9e-29
Identity = 109/260 (41.92%), Postives = 139/260 (53.46%), Query Frame = 1


Query: 3   SSSY-NLNPFPYFPSPSTASYNLPLSIPSLLNSEPTATTFNFHQPHQDPVSFLAPY-LPI 62
           SS+Y +  P+PYFPS S++ +      P   +S  T +         DP+SF  PY +P 
Sbjct: 1   SSTYISSGPYPYFPSSSSSYHPFAFFNPENGSSNNTFS--------HDPLSF--PYNMPT 60

Query: 63  GHFSTSTTPEAVINFAVAGSNVQAFGNIPSASG-------ARMGSGKKDRHSKIYTAQGL 122
            H   +  PE V NF   G +   F N  S S        A+  + KKDRHSKIYT+QGL
Sbjct: 61  THHFHAPIPETVANFVDCGGSAAMFKNDVSGSNFGFSNFMAKKPAPKKDRHSKIYTSQGL 120

Query: 123 RDRRVRLSIDIARKFFDLQDMLGYDKASKTLEWLFSKSKKAIKELSRTKYGNFEVVGGAR 182
           RDRRVRLSI+IARKFFDLQDMLG+DKAS TLEWLF+KSKKA+KEL+R+K  +  VV  A 
Sbjct: 121 RDRRVRLSIEIARKFFDLQDMLGFDKASNTLEWLFNKSKKAMKELARSKNSSSGVV--AN 180

Query: 183 RMSLASDVEEEEEMTNK---------VEVFNLLAKQSRAKAKEKKQVDDENGDDDDGKID 242
             S +    E   M N+         V V +   K  RAK KE ++           K  
Sbjct: 181 SFSSSDSECEVVSMINQDSIDATPEGVVVDSKERKLKRAKIKESRE-----------KAR 237

Query: 243 VHGGETSNLSMEESSFMNKR 245
               E +N  M  +S M K+
Sbjct: 241 ARARERTNKKMFNTSIMKKK 237

The following BLAST results are available for this feature:

BLAST of CmaCh01G003930 vs. Swiss-Prot


Match Name	E-value	Identity	Description
TCP1_ARATH	7.8e-23	53.33	Transcription factor TCP1 OS=Arabidopsis thaliana GN=TCP1 PE=1 SV=1	[more]
TCP12_ARATH	7.3e-21	54.87	Transcription factor TCP12 OS=Arabidopsis thaliana GN=TCP12 PE=2 SV=1	[more]
CYCLD_ANTMA	6.1e-20	42.14	Transcription factor CYCLOIDEA OS=Antirrhinum majus GN=CYC PE=1 SV=1	[more]
CYCLD_ANTML	6.1e-20	42.14	Transcription factor CYCLOIDEA (Fragment) OS=Antirrhinum majus subsp. linkianum ...	[more]
CYCLD_ANTMH	8.0e-20	41.51	Transcription factor CYCLOIDEA (Fragment) OS=Antirrhinum majus subsp. cirrhigeru...	[more]

BLAST of CmaCh01G003930 vs. TrEMBL


Match Name	E-value	Identity	Description
A0A0A0LCE8_CUCSA	1.8e-71	62.37	Uncharacterized protein OS=Cucumis sativus GN=Csa_3G265270 PE=4 SV=1	[more]
Q19CB1_LUPAN	1.2e-30	52.41	Cycloidea-like protein group 1A (Fragment) OS=Lupinus angustifolius GN=LEGCYC1A ...	[more]
Q6VM26_LUPCO	1.3e-29	41.92	Cycloidea-like protein group 1A (Fragment) OS=Lupinus cosentinii PE=4 SV=1	[more]
E2DID3_9FABA	1.7e-29	50.29	Cycloidea-like protein group 1A (Fragment) OS=Lupinus mariae-josephae GN=LEGCYC1...	[more]
E2DID4_9FABA	1.7e-29	50.29	Cycloidea-like protein group 1A (Fragment) OS=Lupinus mariae-josephae GN=LEGCYC1...	[more]

BLAST of CmaCh01G003930 vs. TAIR10


Match Name	E-value	Identity	Description
AT1G67260.1	4.4e-24	53.33	TCP family transcription factor	[more]
AT1G68800.1	4.1e-22	54.87	TCP domain protein 12	[more]
AT3G18550.1	1.3e-15	45.45	TCP family transcription factor	[more]
AT2G31070.1	1.8e-14	50.67	TCP domain protein 10	[more]
AT4G18390.1	1.8e-14	59.02	TEOSINTE BRANCHED 1, cycloidea and PCF transcription factor 2	[more]

BLAST of CmaCh01G003930 vs. NCBI nr


Match Name	E-value	Identity	Description
gi\|778680634\|ref\|XP_011651364.1\|	1.7e-102	63.27	PREDICTED: transcription factor CYCLOIDEA [Cucumis sativus]	[more]
gi\|659123314\|ref\|XP_008461599.1\|	4.9e-102	63.28	PREDICTED: transcription factor CYCLOIDEA, partial [Cucumis melo]	[more]
gi\|700202598\|gb\|KGN57731.1\|	2.6e-71	62.37	hypothetical protein Csa_3G265270 [Cucumis sativus]	[more]
gi\|106896606\|gb\|ABF82965.1\|	1.7e-30	52.41	cycloidea-like protein group 1A, partial [Lupinus angustifolius]	[more]
gi\|33591196\|gb\|AAQ23102.1\|	1.9e-29	41.92	cycloidea-like protein group 1A [Lupinus cosentinii]	[more]

Annotated Terms

The following terms have been associated with this gene:

Vocabulary: **INTERPRO**
Term	Definition
IPR005333	Transcription_factor_TCP
IPR017887	TF_TCP_subgr

GO Annotation

GO Assignments

This gene is annotated with the following GO terms.

Category	Term Accession	Term Name
biological_process	GO:0008150	biological_process
biological_process	GO:0006355	regulation of transcription, DNA-templated
cellular_component	GO:0005575	cellular_component
cellular_component	GO:0005634	nucleus
molecular_function	GO:0003674	molecular_function
molecular_function	GO:0003677	DNA binding

Relationships

The following mRNA feature(s) are a part of this gene:


Feature Name	Unique Name	Type
CmaCh01G003930.1	CmaCh01G003930.1	mRNA

InterPro

Analysis Name: InterPro Annotations of Cucurbita maxima
Date Performed: 2017-05-20


IPR Term	IPR Description	Source	Source Term	Source Description	Alignment
IPR005333	Transcription factor, TCP	PFAM	PF03634	TCP	coord: 99..214 score: 5.4
IPR017887	Transcription factor TCP subgroup	PROFILE	PS51369	TCP	coord: 100..158 score: 36
None	No IPR available	PANTHER	PTHR31072	FAMILY NOT NAMED	coord: 11..161 score: 1.4
None	No IPR available	PANTHER	PTHR31072:SF18	TRANSCRIPTION FACTOR TCP1	coord: 11..161 score: 1.4

Synteny

The following gene(s) are orthologous to this gene:


Gene	Orthologue	Organism	Block
CmaCh01G003930	Cucsa.031600	Cucumber (Gy14) v1	cgycmaB0011
CmaCh01G003930	Cla007113	Watermelon (97103) v1	cmawmB437
CmaCh01G003930	Csa3G265270	Cucumber (Chinese Long) v2	cmacuB455
CmaCh01G003930	MELO3C023772	Melon (DHL92) v3.5.1	cmameB431
CmaCh01G003930	ClCG05G012030	Watermelon (Charleston Gray)	cmawcgB407
CmaCh01G003930	CSPI03G20460	Wild cucumber (PI 183967)	cmacpiB458
CmaCh01G003930	CmoCh01G004170	Cucurbita moschata (Rifu)	cmacmoB468
CmaCh01G003930	CmoCh14G008150	Cucurbita moschata (Rifu)	cmacmoB462
CmaCh01G003930	Lsi05G003980	Bottle gourd (USVL1VR-Ls)	cmalsiB440
CmaCh01G003930	Cp4.1LG02g17200	Cucurbita pepo (Zucchini)	cmacpeB491
CmaCh01G003930	Cp4.1LG03g06340	Cucurbita pepo (Zucchini)	cmacpeB494
CmaCh01G003930	MELO3C023772.2	Melon (DHL92) v3.6.1	cmamedB497
CmaCh01G003930	CsaV3_3G020440	Cucumber (Chinese Long) v3	cmacucB0547
CmaCh01G003930	Cla97C05G093940	Watermelon (97103) v2	cmawmbB473
CmaCh01G003930	Bhi01G001445	Wax gourd	cmawgoB0562
CmaCh01G003930	CsGy3G020180	Cucumber (Gy14) v2	cgybcmaB368
CmaCh01G003930	Carg07485	Silver-seed gourd	carcmaB1059
CmaCh01G003930	Carg22282	Silver-seed gourd	carcmaB0669
CmaCh01G003930	Carg02180	Silver-seed gourd	carcmaB0365

The following gene(s) are paralogous to this gene:


Gene	Paralogue	Organism	Block
CmaCh01G003930	CmaCh14G007990	Cucurbita maxima (Rimu)	cmacmaB255

The following block(s) are covering this gene:


Gene	Organism	Block
CmaCh01G003930	Melon (DHL92) v3.6.1	cmamedB496