CmaCh01G003930.1 (mRNA) Cucurbita maxima (Rimu)
The following sequences are available for this feature:
Legend: CDSexon Hold the cursor over a type above to highlight its positions in the sequence below.ATGGGTTCTTCAAGCTATAATCTCAACCCTTTTCCTTACTTTCCTTCTCCTTCCACTGCTTCCTATAATCTCCCTCTCTCAATTCCTTCACTTCTCAACTCTGAGCCAACAGCCACAACTTTCAATTTCCATCAACCCCACCAAGATCCTGTCTCTTTTTTGGCTCCCTATCTTCCCATTGGCCACTTCTCGACGTCCACAACACCGGAGGCCGTGATCAATTTTGCGGTGGCGGGGAGCAACGTTCAAGCTTTTGGCAACATTCCGAGTGCTTCTGGGGCGAGAATGGGGTCGGGGAAGAAGGACCGACATAGCAAGATTTACACGGCTCAAGGTTTACGGGATCGGAGAGTGAGATTGTCCATTGACATAGCTCGTAAGTTCTTTGATTTGCAAGACATGTTAGGGTATGACAAAGCAAGCAAAACCCTAGAGTGGCTTTTTAGCAAATCCAAAAAAGCAATTAAAGAGCTTTCAAGGACCAAATATGGAAATTTTGAGGTTGTTGGTGGAGCTAGAAGAATGTCTTTGGCTTCAGATGTTGAAGAAGAAGAGGAAATGACTAATAAAGTTGAAGTTTTTAATCTTCTTGCTAAACAATCAAGAGCCAAGGCTAAGGAGAAGAAGCAAGTGGATGATGAAAACGGTGACGACGACGACGGAAAAATCGACGTTCATGGCGGTGAAACTTCAAATCTATCAATGGAGGAATCCTCGTTCATGAACAAGAGAAAACTTTATGCGAAAAAGTTCATCGAGGACGATGAGATGAAATTGTGCCGAGATAACGATGCCGAAGCCTCTCAATGGAAGTTTTTGGATCAAATGAAGGCCTCAAAAGGGCATCTCCAAGAACCCTCCATGATCAAGAGGAAATGGAAGCCTTCCATTATTTCTGGTTCTTCACAGAGAAATCTCCTCATTTCCATTGATGGCATTCCTATAAACTTAACTCAAAATTGGGAGGGCAATAGCAACCCCAATTATCCATTTCCCAAGTAA ATGGGTTCTTCAAGCTATAATCTCAACCCTTTTCCTTACTTTCCTTCTCCTTCCACTGCTTCCTATAATCTCCCTCTCTCAATTCCTTCACTTCTCAACTCTGAGCCAACAGCCACAACTTTCAATTTCCATCAACCCCACCAAGATCCTGTCTCTTTTTTGGCTCCCTATCTTCCCATTGGCCACTTCTCGACGTCCACAACACCGGAGGCCGTGATCAATTTTGCGGTGGCGGGGAGCAACGTTCAAGCTTTTGGCAACATTCCGAGTGCTTCTGGGGCGAGAATGGGGTCGGGGAAGAAGGACCGACATAGCAAGATTTACACGGCTCAAGGTTTACGGGATCGGAGAGTGAGATTGTCCATTGACATAGCTCGTAAGTTCTTTGATTTGCAAGACATGTTAGGGTATGACAAAGCAAGCAAAACCCTAGAGTGGCTTTTTAGCAAATCCAAAAAAGCAATTAAAGAGCTTTCAAGGACCAAATATGGAAATTTTGAGGTTGTTGGTGGAGCTAGAAGAATGTCTTTGGCTTCAGATGTTGAAGAAGAAGAGGAAATGACTAATAAAGTTGAAGTTTTTAATCTTCTTGCTAAACAATCAAGAGCCAAGGCTAAGGAGAAGAAGCAAGTGGATGATGAAAACGGTGACGACGACGACGGAAAAATCGACGTTCATGGCGGTGAAACTTCAAATCTATCAATGGAGGAATCCTCGTTCATGAACAAGAGAAAACTTTATGCGAAAAAGTTCATCGAGGACGATGAGATGAAATTGTGCCGAGATAACGATGCCGAAGCCTCTCAATGGAAGTTTTTGGATCAAATGAAGGCCTCAAAAGGGCATCTCCAAGAACCCTCCATGATCAAGAGGAAATGGAAGCCTTCCATTATTTCTGGTTCTTCACAGAGAAATCTCCTCATTTCCATTGATGGCATTCCTATAAACTTAACTCAAAATTGGGAGGGCAATAGCAACCCCAATTATCCATTTCCCAAGTAA ATGGGTTCTTCAAGCTATAATCTCAACCCTTTTCCTTACTTTCCTTCTCCTTCCACTGCTTCCTATAATCTCCCTCTCTCAATTCCTTCACTTCTCAACTCTGAGCCAACAGCCACAACTTTCAATTTCCATCAACCCCACCAAGATCCTGTCTCTTTTTTGGCTCCCTATCTTCCCATTGGCCACTTCTCGACGTCCACAACACCGGAGGCCGTGATCAATTTTGCGGTGGCGGGGAGCAACGTTCAAGCTTTTGGCAACATTCCGAGTGCTTCTGGGGCGAGAATGGGGTCGGGGAAGAAGGACCGACATAGCAAGATTTACACGGCTCAAGGTTTACGGGATCGGAGAGTGAGATTGTCCATTGACATAGCTCGTAAGTTCTTTGATTTGCAAGACATGTTAGGGTATGACAAAGCAAGCAAAACCCTAGAGTGGCTTTTTAGCAAATCCAAAAAAGCAATTAAAGAGCTTTCAAGGACCAAATATGGAAATTTTGAGGTTGTTGGTGGAGCTAGAAGAATGTCTTTGGCTTCAGATGTTGAAGAAGAAGAGGAAATGACTAATAAAGTTGAAGTTTTTAATCTTCTTGCTAAACAATCAAGAGCCAAGGCTAAGGAGAAGAAGCAAGTGGATGATGAAAACGGTGACGACGACGACGGAAAAATCGACGTTCATGGCGGTGAAACTTCAAATCTATCAATGGAGGAATCCTCGTTCATGAACAAGAGAAAACTTTATGCGAAAAAGTTCATCGAGGACGATGAGATGAAATTGTGCCGAGATAACGATGCCGAAGCCTCTCAATGGAAGTTTTTGGATCAAATGAAGGCCTCAAAAGGGCATCTCCAAGAACCCTCCATGATCAAGAGGAAATGGAAGCCTTCCATTATTTCTGGTTCTTCACAGAGAAATCTCCTCATTTCCATTGATGGCATTCCTATAAACTTAACTCAAAATTGGGAGGGCAATAGCAACCCCAATTATCCATTTCCCAAGTAA MGSSSYNLNPFPYFPSPSTASYNLPLSIPSLLNSEPTATTFNFHQPHQDPVSFLAPYLPIGHFSTSTTPEAVINFAVAGSNVQAFGNIPSASGARMGSGKKDRHSKIYTAQGLRDRRVRLSIDIARKFFDLQDMLGYDKASKTLEWLFSKSKKAIKELSRTKYGNFEVVGGARRMSLASDVEEEEEMTNKVEVFNLLAKQSRAKAKEKKQVDDENGDDDDGKIDVHGGETSNLSMEESSFMNKRKLYAKKFIEDDEMKLCRDNDAEASQWKFLDQMKASKGHLQEPSMIKRKWKPSIISGSSQRNLLISIDGIPINLTQNWEGNSNPNYPFPK
BLAST of CmaCh01G003930.1 vs. Swiss-Prot
Match: TCP1_ARATH (Transcription factor TCP1 OS=Arabidopsis thaliana GN=TCP1 PE=1 SV=1) HSP 1 Score: 109.4 bits (272), Expect = 7.8e-23 Identity = 72/135 (53.33%), Postives = 85/135 (62.96%), Query Frame = 1
BLAST of CmaCh01G003930.1 vs. Swiss-Prot
Match: TCP12_ARATH (Transcription factor TCP12 OS=Arabidopsis thaliana GN=TCP12 PE=2 SV=1) HSP 1 Score: 102.8 bits (255), Expect = 7.3e-21 Identity = 62/113 (54.87%), Postives = 78/113 (69.03%), Query Frame = 1
BLAST of CmaCh01G003930.1 vs. Swiss-Prot
Match: CYCLD_ANTMA (Transcription factor CYCLOIDEA OS=Antirrhinum majus GN=CYC PE=1 SV=1) HSP 1 Score: 99.8 bits (247), Expect = 6.1e-20 Identity = 67/159 (42.14%), Postives = 90/159 (56.60%), Query Frame = 1
BLAST of CmaCh01G003930.1 vs. Swiss-Prot
Match: CYCLD_ANTML (Transcription factor CYCLOIDEA (Fragment) OS=Antirrhinum majus subsp. linkianum GN=CYC PE=3 SV=1) HSP 1 Score: 99.8 bits (247), Expect = 6.1e-20 Identity = 67/159 (42.14%), Postives = 90/159 (56.60%), Query Frame = 1
BLAST of CmaCh01G003930.1 vs. Swiss-Prot
Match: CYCLD_ANTMH (Transcription factor CYCLOIDEA (Fragment) OS=Antirrhinum majus subsp. cirrhigerum GN=CYC PE=3 SV=1) HSP 1 Score: 99.4 bits (246), Expect = 8.0e-20 Identity = 66/159 (41.51%), Postives = 90/159 (56.60%), Query Frame = 1
BLAST of CmaCh01G003930.1 vs. TrEMBL
Match: A0A0A0LCE8_CUCSA (Uncharacterized protein OS=Cucumis sativus GN=Csa_3G265270 PE=4 SV=1) HSP 1 Score: 277.7 bits (709), Expect = 1.8e-71 Identity = 184/295 (62.37%), Postives = 198/295 (67.12%), Query Frame = 1
BLAST of CmaCh01G003930.1 vs. TrEMBL
Match: Q19CB1_LUPAN (Cycloidea-like protein group 1A (Fragment) OS=Lupinus angustifolius GN=LEGCYC1A PE=4 SV=1) HSP 1 Score: 142.1 bits (357), Expect = 1.2e-30 Identity = 87/166 (52.41%), Postives = 108/166 (65.06%), Query Frame = 1
BLAST of CmaCh01G003930.1 vs. TrEMBL
Match: Q6VM26_LUPCO (Cycloidea-like protein group 1A (Fragment) OS=Lupinus cosentinii PE=4 SV=1) HSP 1 Score: 138.7 bits (348), Expect = 1.3e-29 Identity = 109/260 (41.92%), Postives = 139/260 (53.46%), Query Frame = 1
BLAST of CmaCh01G003930.1 vs. TrEMBL
Match: E2DID3_9FABA (Cycloidea-like protein group 1A (Fragment) OS=Lupinus mariae-josephae GN=LEGCYC1A PE=4 SV=1) HSP 1 Score: 138.3 bits (347), Expect = 1.7e-29 Identity = 86/171 (50.29%), Postives = 107/171 (62.57%), Query Frame = 1
BLAST of CmaCh01G003930.1 vs. TrEMBL
Match: E2DID4_9FABA (Cycloidea-like protein group 1A (Fragment) OS=Lupinus mariae-josephae GN=LEGCYC1A PE=4 SV=1) HSP 1 Score: 138.3 bits (347), Expect = 1.7e-29 Identity = 86/171 (50.29%), Postives = 107/171 (62.57%), Query Frame = 1
BLAST of CmaCh01G003930.1 vs. TAIR10
Match: AT1G67260.1 (AT1G67260.1 TCP family transcription factor ) HSP 1 Score: 109.4 bits (272), Expect = 4.4e-24 Identity = 72/135 (53.33%), Postives = 85/135 (62.96%), Query Frame = 1
BLAST of CmaCh01G003930.1 vs. TAIR10
Match: AT1G68800.1 (AT1G68800.1 TCP domain protein 12) HSP 1 Score: 102.8 bits (255), Expect = 4.1e-22 Identity = 62/113 (54.87%), Postives = 78/113 (69.03%), Query Frame = 1
BLAST of CmaCh01G003930.1 vs. TAIR10
Match: AT3G18550.1 (AT3G18550.1 TCP family transcription factor ) HSP 1 Score: 81.3 bits (199), Expect = 1.3e-15 Identity = 45/99 (45.45%), Postives = 64/99 (64.65%), Query Frame = 1
BLAST of CmaCh01G003930.1 vs. TAIR10
Match: AT2G31070.1 (AT2G31070.1 TCP domain protein 10) HSP 1 Score: 77.4 bits (189), Expect = 1.8e-14 Identity = 38/75 (50.67%), Postives = 53/75 (70.67%), Query Frame = 1
BLAST of CmaCh01G003930.1 vs. TAIR10
Match: AT4G18390.1 (AT4G18390.1 TEOSINTE BRANCHED 1, cycloidea and PCF transcription factor 2) HSP 1 Score: 77.4 bits (189), Expect = 1.8e-14 Identity = 36/61 (59.02%), Postives = 47/61 (77.05%), Query Frame = 1
BLAST of CmaCh01G003930.1 vs. NCBI nr
Match: gi|778680634|ref|XP_011651364.1| (PREDICTED: transcription factor CYCLOIDEA [Cucumis sativus]) HSP 1 Score: 381.3 bits (978), Expect = 1.7e-102 Identity = 248/392 (63.27%), Postives = 272/392 (69.39%), Query Frame = 1
BLAST of CmaCh01G003930.1 vs. NCBI nr
Match: gi|659123314|ref|XP_008461599.1| (PREDICTED: transcription factor CYCLOIDEA, partial [Cucumis melo]) HSP 1 Score: 379.8 bits (974), Expect = 4.9e-102 Identity = 243/384 (63.28%), Postives = 270/384 (70.31%), Query Frame = 1
BLAST of CmaCh01G003930.1 vs. NCBI nr
Match: gi|700202598|gb|KGN57731.1| (hypothetical protein Csa_3G265270 [Cucumis sativus]) HSP 1 Score: 277.7 bits (709), Expect = 2.6e-71 Identity = 184/295 (62.37%), Postives = 198/295 (67.12%), Query Frame = 1
BLAST of CmaCh01G003930.1 vs. NCBI nr
Match: gi|106896606|gb|ABF82965.1| (cycloidea-like protein group 1A, partial [Lupinus angustifolius]) HSP 1 Score: 142.1 bits (357), Expect = 1.7e-30 Identity = 87/166 (52.41%), Postives = 108/166 (65.06%), Query Frame = 1
BLAST of CmaCh01G003930.1 vs. NCBI nr
Match: gi|33591196|gb|AAQ23102.1| (cycloidea-like protein group 1A [Lupinus cosentinii]) HSP 1 Score: 138.7 bits (348), Expect = 1.9e-29 Identity = 109/260 (41.92%), Postives = 139/260 (53.46%), Query Frame = 1
The following BLAST results are available for this feature:
GO Assignments
This mRNA is annotated with the following GO terms.
This mRNA is a part of the following gene feature(s):
The following polypeptide feature(s) derives from this mRNA:
The following CDS feature(s) are a part of this mRNA:
The following exon feature(s) are a part of this mRNA:
Analysis Name: InterPro Annotations of Cucurbita maxima
Date Performed: 2017-05-20
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