CsaV3_3G020440 (gene) Cucumber (Chinese Long) v3
The following sequences are available for this feature:
Legend: exonpolypeptideCDS Hold the cursor over a type above to highlight its positions in the sequence below.CACTTTTGTCCTCTCTCTCTCTCTCTCTCTTTCTCCTTCCCTTTGATCTCTTTCTCAAATATCTCAACTATTTTTACCAGAAGAAATAAGATCATCAACATACAAAAAAGAAAAATTTGAGAAGAAGTAGACGAAATACTAACCCTTATTGCCCTTATTGATCTTCCAATACTGCATGACCTTCAACCTCTCTCACACTCCATCTTCATATCTCTCTCCCTTTTGAATATCAACCCCTAAACCTAAAAATCGATCACAATTATATTTTCAAACCAAGGAAGAAGGAAAATGATGAAAGATCTTTAATGGGTAGCAGAGTTCTTTGAGAGTTTCATTTCACATTTCCAAAATCCTAAAGGAAAGAAGAAAATGGGATCTTCAAACTATAATCTCAACCCTTTTCATTGTTTTCCTTCTTCTACTTCTTCCACTACTAATTCCTACAATCTCCCTCCCTCCATTCCTTCACTTCTCAACTCTGACCCTTCATCCAGCAACACTTCGACTATCAACTTCCATCACCAACCCCATCAAGATCCACTCTCATTTCTAGCTCCCTATTTTCCCATTGCTCATTTCTCCGCGTTGGCACCTCCCGAAACGGCCGTGATCAATTTTGCAGTAGCAGGGAACAACATTCAAGCTCTCGGTGATATGGTTATCCCGAGCGCTCCTGGAGCAGGGACAACGGGGATGGGGAAGAAGGATCGGCATAGCAAGATTTATACAGCTCAGGGTTTGCGCGATCGAAGAGTGAGATTGTCCATTGATATAGCTCGCAAGTTCTTTGATTTGCAAGACATGTTAGGGTACGATAAAGCAAGCAAAACCCTAGAGTGGCTTTTTAGCAAATCCAAAAAAGCAATTAAAGAGCTTTCAAGGACCAAGAGTGGAAATCTTGGGGTTCATGGAGGGGCTAAAAAATTTTCTTTGGTAGCTGATTCTTCTGATGTTGAAGAAGAATATGATGATGATAAAGAAGGATGGGAGCTGAAGATGAAATCAATGTTGAGCATTGATGAACAAGAGAAAGTGAGTAAAGAGAAAGTTGAAGGTTTTAATCTTCTTGCTAAAGAATCAAGAGCCAAAGCCAGAGCAAGAGCCAGAGAGAGAACCATGGAGAAGAAGCAAGTTGACAACAGGAAAGTTTACGGTCATCAGAAGGGCGGCGCCCAAGAAGTTTCGAATCATTGGAGTAAGCATTTGAATCATAGCACTGAAACTTCAAATCTGTCAATGGAGGAATCCTCGTTCATTAACAAGAGAAAGATCATTTATTCTAAGAAGTTCATCAACCACGACAACTACAGTGATAAATCGCGTCGAGATGACGAGAATGCCGAAACCTCTCAACGGAAGCTTTTGGATCAGATGAAGGCTTCAAAGAGGAAATGGAAACCTTCCATTATTTCTGGTTCTTCTCAAAGAAATTTTCTCATCTCCATTGACGGTATTCCCATTAACTTAACTCAAAATTTGGATACCAATAGCAACCCCAATTATCCTATTGCCAAGTAAAATTTTATTAACAGGTAATTTCAACCATCAAAGGCTTTAGATTTTTTATTTTTTCCCCCTAAAAAATTGATGAATATTTTGTTTTTGTGTTTCGGTTTCTTTTTTTTTTTCTTTTCTTTTTTTTTTCTTTTTTGGCAGTTTTACAAATCAAGGGTGGAATGCAGTCAACAATGTCAAAACGTGGCCTGTTTTAGATTGGTTTTTCTTCAACTACTACTTGAATGTTCTTTTAGATTTATGATATTATAACAATTAAAGACTGATGATTAAGTTTTTTCTTGCTTTATTATAATCACTAAATCATGTTCGATCCATTATATCATTTTTCTTTAGTATATCCAAATATATATTGTGTCTTTGTCTCATGGATATTCTTCAAATA ATGGGATCTTCAAACTATAATCTCAACCCTTTTCATTGTTTTCCTTCTTCTACTTCTTCCACTACTAATTCCTACAATCTCCCTCCCTCCATTCCTTCACTTCTCAACTCTGACCCTTCATCCAGCAACACTTCGACTATCAACTTCCATCACCAACCCCATCAAGATCCACTCTCATTTCTAGCTCCCTATTTTCCCATTGCTCATTTCTCCGCGTTGGCACCTCCCGAAACGGCCGTGATCAATTTTGCAGTAGCAGGGAACAACATTCAAGCTCTCGGTGATATGGTTATCCCGAGCGCTCCTGGAGCAGGGACAACGGGGATGGGGAAGAAGGATCGGCATAGCAAGATTTATACAGCTCAGGGTTTGCGCGATCGAAGAGTGAGATTGTCCATTGATATAGCTCGCAAGTTCTTTGATTTGCAAGACATGTTAGGGTACGATAAAGCAAGCAAAACCCTAGAGTGGCTTTTTAGCAAATCCAAAAAAGCAATTAAAGAGCTTTCAAGGACCAAGAGTGGAAATCTTGGGGTTCATGGAGGGGCTAAAAAATTTTCTTTGGTAGCTGATTCTTCTGATGTTGAAGAAGAATATGATGATGATAAAGAAGGATGGGAGCTGAAGATGAAATCAATGTTGAGCATTGATGAACAAGAGAAAGTGAGTAAAGAGAAAGTTGAAGGTTTTAATCTTCTTGCTAAAGAATCAAGAGCCAAAGCCAGAGCAAGAGCCAGAGAGAGAACCATGGAGAAGAAGCAAGTTGACAACAGGAAAGTTTACGGTCATCAGAAGGGCGGCGCCCAAGAAGTTTCGAATCATTGGAGTAAGCATTTGAATCATAGCACTGAAACTTCAAATCTGTCAATGGAGGAATCCTCGTTCATTAACAAGAGAAAGATCATTTATTCTAAGAAGTTCATCAACCACGACAACTACAGTGATAAATCGCGTCGAGATGACGAGAATGCCGAAACCTCTCAACGGAAGCTTTTGGATCAGATGAAGGCTTCAAAGAGGAAATGGAAACCTTCCATTATTTCTGGTTCTTCTCAAAGAAATTTTCTCATCTCCATTGACGGTATTCCCATTAACTTAACTCAAAATTTGGATACCAATAGCAACCCCAATTATCCTATTGCCAAGTAA ATGGGATCTTCAAACTATAATCTCAACCCTTTTCATTGTTTTCCTTCTTCTACTTCTTCCACTACTAATTCCTACAATCTCCCTCCCTCCATTCCTTCACTTCTCAACTCTGACCCTTCATCCAGCAACACTTCGACTATCAACTTCCATCACCAACCCCATCAAGATCCACTCTCATTTCTAGCTCCCTATTTTCCCATTGCTCATTTCTCCGCGTTGGCACCTCCCGAAACGGCCGTGATCAATTTTGCAGTAGCAGGGAACAACATTCAAGCTCTCGGTGATATGGTTATCCCGAGCGCTCCTGGAGCAGGGACAACGGGGATGGGGAAGAAGGATCGGCATAGCAAGATTTATACAGCTCAGGGTTTGCGCGATCGAAGAGTGAGATTGTCCATTGATATAGCTCGCAAGTTCTTTGATTTGCAAGACATGTTAGGGTACGATAAAGCAAGCAAAACCCTAGAGTGGCTTTTTAGCAAATCCAAAAAAGCAATTAAAGAGCTTTCAAGGACCAAGAGTGGAAATCTTGGGGTTCATGGAGGGGCTAAAAAATTTTCTTTGGTAGCTGATTCTTCTGATGTTGAAGAAGAATATGATGATGATAAAGAAGGATGGGAGCTGAAGATGAAATCAATGTTGAGCATTGATGAACAAGAGAAAGTGAGTAAAGAGAAAGTTGAAGGTTTTAATCTTCTTGCTAAAGAATCAAGAGCCAAAGCCAGAGCAAGAGCCAGAGAGAGAACCATGGAGAAGAAGCAAGTTGACAACAGGAAAGTTTACGGTCATCAGAAGGGCGGCGCCCAAGAAGTTTCGAATCATTGGAGTAAGCATTTGAATCATAGCACTGAAACTTCAAATCTGTCAATGGAGGAATCCTCGTTCATTAACAAGAGAAAGATCATTTATTCTAAGAAGTTCATCAACCACGACAACTACAGTGATAAATCGCGTCGAGATGACGAGAATGCCGAAACCTCTCAACGGAAGCTTTTGGATCAGATGAAGGCTTCAAAGAGGAAATGGAAACCTTCCATTATTTCTGGTTCTTCTCAAAGAAATTTTCTCATCTCCATTGACGGTATTCCCATTAACTTAACTCAAAATTTGGATACCAATAGCAACCCCAATTATCCTATTGCCAAGTAA MGSSNYNLNPFHCFPSSTSSTTNSYNLPPSIPSLLNSDPSSSNTSTINFHHQPHQDPLSFLAPYFPIAHFSALAPPETAVINFAVAGNNIQALGDMVIPSAPGAGTTGMGKKDRHSKIYTAQGLRDRRVRLSIDIARKFFDLQDMLGYDKASKTLEWLFSKSKKAIKELSRTKSGNLGVHGGAKKFSLVADSSDVEEEYDDDKEGWELKMKSMLSIDEQEKVSKEKVEGFNLLAKESRAKARARARERTMEKKQVDNRKVYGHQKGGAQEVSNHWSKHLNHSTETSNLSMEESSFINKRKIIYSKKFINHDNYSDKSRRDDENAETSQRKLLDQMKASKRKWKPSIISGSSQRNFLISIDGIPINLTQNLDTNSNPNYPIAK
BLAST of CsaV3_3G020440 vs. NCBI nr
Match: XP_011651364.1 (PREDICTED: transcription factor CYCLOIDEA [Cucumis sativus]) HSP 1 Score: 715.3 bits (1845), Expect = 1.1e-202 Identity = 382/382 (100.00%), Postives = 382/382 (100.00%), Query Frame = 0
BLAST of CsaV3_3G020440 vs. NCBI nr
Match: XP_008461599.2 (PREDICTED: transcription factor TCP1 [Cucumis melo]) HSP 1 Score: 605.5 bits (1560), Expect = 1.2e-169 Identity = 337/383 (87.99%), Postives = 353/383 (92.17%), Query Frame = 0
BLAST of CsaV3_3G020440 vs. NCBI nr
Match: KGN57731.1 (hypothetical protein Csa_3G265270 [Cucumis sativus]) HSP 1 Score: 529.3 bits (1362), Expect = 1.1e-146 Identity = 287/287 (100.00%), Postives = 287/287 (100.00%), Query Frame = 0
BLAST of CsaV3_3G020440 vs. NCBI nr
Match: XP_023521549.1 (transcription factor DICHOTOMA-like [Cucurbita pepo subsp. pepo] >XP_023524593.1 transcription factor DICHOTOMA-like [Cucurbita pepo subsp. pepo]) HSP 1 Score: 376.7 bits (966), Expect = 9.3e-101 Identity = 248/392 (63.27%), Postives = 269/392 (68.62%), Query Frame = 0
BLAST of CsaV3_3G020440 vs. NCBI nr
Match: XP_022143422.1 (transcription factor TEOSINTE BRANCHED 1-like [Momordica charantia]) HSP 1 Score: 357.8 bits (917), Expect = 4.5e-95 Identity = 232/398 (58.29%), Postives = 271/398 (68.09%), Query Frame = 0
BLAST of CsaV3_3G020440 vs. TAIR10
Match: AT1G68800.1 (TCP domain protein 12) HSP 1 Score: 101.7 bits (252), Expect = 1.0e-21 Identity = 53/81 (65.43%), Postives = 62/81 (76.54%), Query Frame = 0
BLAST of CsaV3_3G020440 vs. TAIR10
Match: AT1G67260.1 (TCP family transcription factor ) HSP 1 Score: 100.1 bits (248), Expect = 3.1e-21 Identity = 71/158 (44.94%), Postives = 91/158 (57.59%), Query Frame = 0
BLAST of CsaV3_3G020440 vs. TAIR10
Match: AT1G53230.1 (TEOSINTE BRANCHED 1, cycloidea and PCF transcription factor 3) HSP 1 Score: 78.2 bits (191), Expect = 1.2e-14 Identity = 41/100 (41.00%), Postives = 62/100 (62.00%), Query Frame = 0
BLAST of CsaV3_3G020440 vs. TAIR10
Match: AT2G31070.1 (TCP domain protein 10) HSP 1 Score: 78.2 bits (191), Expect = 1.2e-14 Identity = 38/83 (45.78%), Postives = 55/83 (66.27%), Query Frame = 0
BLAST of CsaV3_3G020440 vs. TAIR10
Match: AT3G15030.1 (TCP family transcription factor 4) HSP 1 Score: 76.6 bits (187), Expect = 3.6e-14 Identity = 36/67 (53.73%), Postives = 49/67 (73.13%), Query Frame = 0
BLAST of CsaV3_3G020440 vs. Swiss-Prot
Match: sp|A0AQW4|TCP12_ARATH (Transcription factor TCP12 OS=Arabidopsis thaliana OX=3702 GN=TCP12 PE=2 SV=1) HSP 1 Score: 101.7 bits (252), Expect = 1.9e-20 Identity = 53/81 (65.43%), Postives = 62/81 (76.54%), Query Frame = 0
BLAST of CsaV3_3G020440 vs. Swiss-Prot
Match: sp|Q9FYG7|TCP1_ARATH (Transcription factor TCP1 OS=Arabidopsis thaliana OX=3702 GN=TCP1 PE=1 SV=1) HSP 1 Score: 100.1 bits (248), Expect = 5.5e-20 Identity = 71/158 (44.94%), Postives = 91/158 (57.59%), Query Frame = 0
BLAST of CsaV3_3G020440 vs. Swiss-Prot
Match: sp|Q9SBV6|CYCLD_ANTML (Transcription factor CYCLOIDEA (Fragment) OS=Antirrhinum majus subsp. linkianum OX=102601 GN=CYC PE=3 SV=1) HSP 1 Score: 99.8 bits (247), Expect = 7.2e-20 Identity = 63/121 (52.07%), Postives = 77/121 (63.64%), Query Frame = 0
BLAST of CsaV3_3G020440 vs. Swiss-Prot
Match: sp|Q9SBV9|CYCLD_ANTMH (Transcription factor CYCLOIDEA (Fragment) OS=Antirrhinum majus subsp. cirrhigerum OX=102600 GN=CYC PE=3 SV=1) HSP 1 Score: 99.4 bits (246), Expect = 9.4e-20 Identity = 61/117 (52.14%), Postives = 74/117 (63.25%), Query Frame = 0
BLAST of CsaV3_3G020440 vs. Swiss-Prot
Match: sp|Q93WI2|TB1_MAIZE (Transcription factor TEOSINTE BRANCHED 1 OS=Zea mays OX=4577 GN=TB1 PE=2 SV=2) HSP 1 Score: 95.5 bits (236), Expect = 1.4e-18 Identity = 70/184 (38.04%), Postives = 96/184 (52.17%), Query Frame = 0
BLAST of CsaV3_3G020440 vs. TrEMBL
Match: tr|A0A1S3CGD1|A0A1S3CGD1_CUCME (transcription factor TCP1 OS=Cucumis melo OX=3656 GN=LOC103500163 PE=4 SV=1) HSP 1 Score: 605.5 bits (1560), Expect = 8.2e-170 Identity = 337/383 (87.99%), Postives = 353/383 (92.17%), Query Frame = 0
BLAST of CsaV3_3G020440 vs. TrEMBL
Match: tr|A0A0A0LCE8|A0A0A0LCE8_CUCSA (Uncharacterized protein OS=Cucumis sativus OX=3659 GN=Csa_3G265270 PE=4 SV=1) HSP 1 Score: 529.3 bits (1362), Expect = 7.4e-147 Identity = 287/287 (100.00%), Postives = 287/287 (100.00%), Query Frame = 0
BLAST of CsaV3_3G020440 vs. TrEMBL
Match: tr|A0A1J7HXK1|A0A1J7HXK1_LUPAN (Uncharacterized protein OS=Lupinus angustifolius OX=3871 GN=TanjilG_26698 PE=4 SV=1) HSP 1 Score: 132.9 bits (333), Expect = 1.5e-27 Identity = 94/203 (46.31%), Postives = 119/203 (58.62%), Query Frame = 0
BLAST of CsaV3_3G020440 vs. TrEMBL
Match: tr|Q6VM69|Q6VM69_9FABA (CYCLOIDEA-like group 1B protein (Fragment) OS=Genista tenera OX=175403 PE=4 SV=1) HSP 1 Score: 132.1 bits (331), Expect = 2.6e-27 Identity = 93/200 (46.50%), Postives = 115/200 (57.50%), Query Frame = 0
BLAST of CsaV3_3G020440 vs. TrEMBL
Match: tr|Q84N90|Q84N90_9FABA (LEGCYC1B OS=Cadia purpurea OX=53844 PE=4 SV=2) HSP 1 Score: 131.0 bits (328), Expect = 5.9e-27 Identity = 94/195 (48.21%), Postives = 114/195 (58.46%), Query Frame = 0
The following BLAST results are available for this feature:
GO Assignments
This gene is annotated with the following GO terms.
The following mRNA feature(s) are a part of this gene:
Analysis Name: InterPro Annotations of cucumber chineselong genome (v3)
Date Performed: 2019-03-04
The following gene(s) are orthologous to this gene: The following gene(s) are paralogous to this gene: None The following block(s) are covering this gene: None |