Cla021836 (gene) Watermelon (97103) v1
The following sequences are available for this feature:
Legend: CDS Hold the cursor over a type above to highlight its positions in the sequence below.ATGAAATCTTCGGCCTCACCTCACTCAAAAGCTCCGTTCAAGTTCAGGATGTGAGTTCTTTCTCTCCTTCAACTCCTCTATCAATTGTTCTTTTTCATTGATTTCTCCTTCTTATGGTTTCATATTTCTTTATGTTTTCAATCATTATCGAAGTCCGACGGCGGAGAATCTAGTGCCAATTCGTTTGGACATTGAAATCGACGGTCAGAGGTTCAAAGATGCCTTCACTTGGAACCCTTCTGGTAATTTTGATTACTTACCTTGCTCCTGCTTTTTATGTTTCCTTTTAAATCAACGATGATTCATGTGTAGGAGGGCAGTTTCAGCTTTTGATTGTTCGAGTTTAGGGTTTTCTTTTTTCTCCCTAAATTTATGGTTTACGACTTGGAAAAACTGAATTAATCTGATATTGGCCGCTATGTTGCTGATGCTTTAAAAAAGACTTTGAATACTTCGTTTTGTTTTTACATCTGACTTAATGTCTTCCATTGTGCTTATTCGTTTTGGTGTAATTTTTAAGTGTTTTTGAAAGTGCTTAGTGTGGCGCACTATAGCTCCATAGTCATTGAGAACTTAAACTTATAATTTTGTAGATCTTTTAACTTTAAAAGTATTTCAAAAATTCTTGAACTTTCAATTATGCTTCAAATATAGGTGTATTTAAGATTTTTTTTTCTTTTTTATAATTCACGGATCTACTAAACACAAAATTGAATTTTATATCTAGTAGGGCCTTAAATGTTCAATTTTTTTATACTATAGTAATGTGAATGTTGATAATGTAAAAAAAAAAAAAGAAAAGGACTTATTGGACATGAACTTAAAAGTTCAAAGACTTACTAGACAAAAAATTCAAAGTTTTGGAACCTAGTAAAAGCTTTTTATAGTATAGAGACTAAGTTTGTAATTTAACTTATGACGGATAGATATAAAAAGCAGTATTATGAATAACAAGGTGTTGAAAAATTTAGGAAATTAGAGCTCTTTGTAAGAGGTGGAGGAAAAAAAAAATTCTTAAAGAATATCTGTTAGTTTTCTTACTTAAAGAATTTGAAAAGAAATTAAGAAAAGGGATCTCCATGCACTGAGGGGCCACGGCGTGCTTCATTAATGGTCTCTCACTTTTCAAAGAAGCGCCTAGGCGATTTTGAAGCCACTGCTTGAAATAATATTTCTATTAGACATAAAGAATTTTGAATAATGTAATATTTCTATTCTTACATGCTATTTCTATTAGAGGGTGGTCCGTTATTTTGTGGGCTGCTTTTTTTATATGCCATTGTATTCCTTCATTTTATTTCAATGAAAGTGGTTATTTCTATAAAAAAAAATATTTCTATTAGAATTAACCACATTCCCCATTATTTTCACAGCCGGCTCACTGATGTTCAGAGAAGTTTTGTGCCCCAAGGCTAGCTTTGAGTGACAACATGAGTTTTTAGGATCTTGTTTGATTGCCATTTGATTTTTTGTTTTGAAAATTCACAACTTCTATTCATATAGTCCTCATCTTTCTTGAGGAAACATTTGAATTCTTAGCAAGATTTCAAAAACAAAAACAAGTTTTTAAAAACTGTTTTTTTAGTTTTCAAAGCTTGGCATGAATTTCAAAATATGGTTATGTAGTAAATAACAAACCAAAGAAACTTACAAGTGAAAGTAGTGTTTATTTGTTTAATTTTCAAAAACAAAGAACTAAATGGTTATCAAACATGGGCACTATTATTAAGTTCTTAACATGGGAGCTTGAATCTAGGAATTCAGAGGATATCTTAAAATATCCCAAAACTATAGGCACCCTTGAGGCTTACCTTGAAAATGCCTTTTTTGCTCTTCTAATAATATCTTCAATAGCGTCATTAAATTTTATGTTTACTCTAGATCCCGATTCAGAGGTGGTGGTCTTTGCAAAGAGGACGGTGAAAGATTTAAAGCTTCCTCCAGCATTTATAACACAAATTGCACAATCCATTCAAGTAAGGACAATAGTCATCCGAACCTCCCTCTCTCATTCTTCATGGATCTGAATGGTCAGCCTAAACCATGTTTTTTTTAGATATTATCAACAAAACCTTCCAACTTAAATCAATACCTGTAATGAAATCTTAATGTTCCATCAAATCCACTCATACATTCTCTGGTTTTGTTTATCAGTCACAACTTACAGAATTTCGATCCTTTGAAGGTCAAGATATGTATACTGGTGAAAAGATTATTCCAATCAAGGTTTGTCACACTGGCGTTACAATACCAATCTCTTGACGACTTCCTCCCTTTATCATTATTCTACAGCTTGAGCCAAATAATGCAATTCTGTTTCTTTCTCAGCTTGATCTCCGAGTGAACAATACGCTTATAAAGGATCAGTTTCTGTGGGTAAAAGTTGAATGTGTTCTTGATACATTTGACTGGAACATATATACTTGCTAAGCTTACTTGTGCAATATGATATGCCTTTTAGGACTTGAACAACTATGAGAGTGACCCTGAAGAGTTCTCCAGGACATTATGCAAAGATTTGGGTATTGAAGACCCTGAAGTTGGAGTAAGTGAAGTACAATTGAACATTTAAATGTACAAAATAATTGAACTTTTGGTTCCGTGTAATTTGGTTGCTTCGGTCATGAAAAGACAGCTTTCTACTTTAAAGGGATGGATTGTCAATGAGCTATTTTCATCTAAAGTGTCCTGTATATGCTTTTCTCCAACTATTTGATACCATGAGAATTTCATTTATTTTTGTGAGGTAGCCTGCAATTGCTTTTGCGATTAGAGAACAGCTCTATGAGGTTTGTTTTTTCTTGCCTGTTAAGCCTCCTTTTCCTAAAGACTACTTTTTCTTTTTAGTTCTGTTCATAATCTGAACGATTTATTTCATGACTGCATCTTCATGTGTCTGTGTTCCAGATAGCAGTGCAGAATGTTGCTTCAGCAAGAGAAGGCAGAATGAGCAAGAAGGGCCGCCGAGGGTTCGAGCATGTTCCAGTAAGGTATCTATTTAGATATTCTAACTTGTGCATTGTTCCTCATTCTCTTTGTAATCTGGTGAGTTGCAATGAGACTAAATATTTACCTTTTGCGATGGTGCATTTCTCTGTTTGGTGCAACAGTAAAACTGGAGGTGCTTCGGTGGACTTGGTGAAGTTATTTGGTCATAGATCAAGTGTTGTTCGGTTAGTCTATTCCCTATTTATGATTATTATTATTATTATTATTATTAATTTGGAATGATTAGTCTATTCCTTGTTGCTTATGGATTTTCCCTTCATTTTCTCTCTCTTATCTGACCTAAGAAGGTATATGTATATAATTCGTACATGATTATTTAATACTGCCAGTTATGTTTGTTTCCTGGTATCGTCTGTCTTTATCTTCAAGAGAGAAATCCAAAGTTTTTCAACATCGACCAAGAAGTTTAGGGTGTTTTTGGTTCTTGGGAATCATAAGGTGCTCATGTGAATGACAACTTATCTCAAGTTTTAAAAAGATTCCCACATGTATGAGATATCTAGACATGCTGAGATGTCTTCATATGCAGGTACCTCATTTCCATAACACTTGGTGGGGTTATGGGTATCTATATTTTGGGCATAAAGGAAAAAGATATTATTTGCTCCTTGTGCCCTTTTACCATTTTCCTAAAATTTGTTGCATACTTTCTAATTTTAATTTCTATAGGTAGTAGTTTGAGTATATCATTAATGTTCTTTCTGTTACGGATGAATCTAGAGTCCTAGACTATTTTTATTTTTTCCATTTACACATAACTATTCCCAAGTTTTAGTTTAAAAATTAGTTAAAACTACTCAAAAAAGTACATGAGTTACAAAGCACGTGCTTGTGAAAGTGTAAAAATATGCTTATTGTGGTATACACTAAAATGCAACAGGAAAAGAAAGGACTGGGACATTTACGAACCAATTGTCGATCTTCTATCCAATGAGGAAGTAGATGCCCTTGAAGCAAAAGAAGAGAGAACTGCTCGATAA ATGAAATCTTCGGCCTCACCTCACTCAAAAGCTCCGTTCAAGTTCAGGATTCCGACGGCGGAGAATCTAGTGCCAATTCGTTTGGACATTGAAATCGACGGTCAGAGGTTCAAAGATGCCTTCACTTGGAACCCTTCTGATCCCGATTCAGAGGTGGTGGTCTTTGCAAAGAGGACGGTGAAAGATTTAAAGCTTCCTCCAGCATTTATAACACAAATTGCACAATCCATTCAATCACAACTTACAGAATTTCGATCCTTTGAAGGTCAAGATATGTATACTGGTGAAAAGATTATTCCAATCAAGCTTGATCTCCGAGTGAACAATACGCTTATAAAGGATCAGTTTCTGTGGGACTTGAACAACTATGAGAGTGACCCTGAAGAGTTCTCCAGGACATTATGCAAAGATTTGGGTATTGAAGACCCTGAAGTTGGACCTGCAATTGCTTTTGCGATTAGAGAACAGCTCTATGAGATAGCAGTGCAGAATGTTGCTTCAGCAAGAGAAGGCAGAATGAGCAAGAAGGGCCGCCGAGGGTTCGAGCATGTTCCAGTAAGTAAAACTGGAGGTGCTTCGGTGGACTTGGTGAAGTTATTTGGTCATAGATCAAGTGTTGTTCGGAAAAGAAAGGACTGGGACATTTACGAACCAATTGTCGATCTTCTATCCAATGAGGAAGTAGATGCCCTTGAAGCAAAAGAAGAGAGAACTGCTCGATAA ATGAAATCTTCGGCCTCACCTCACTCAAAAGCTCCGTTCAAGTTCAGGATTCCGACGGCGGAGAATCTAGTGCCAATTCGTTTGGACATTGAAATCGACGGTCAGAGGTTCAAAGATGCCTTCACTTGGAACCCTTCTGATCCCGATTCAGAGGTGGTGGTCTTTGCAAAGAGGACGGTGAAAGATTTAAAGCTTCCTCCAGCATTTATAACACAAATTGCACAATCCATTCAATCACAACTTACAGAATTTCGATCCTTTGAAGGTCAAGATATGTATACTGGTGAAAAGATTATTCCAATCAAGCTTGATCTCCGAGTGAACAATACGCTTATAAAGGATCAGTTTCTGTGGGACTTGAACAACTATGAGAGTGACCCTGAAGAGTTCTCCAGGACATTATGCAAAGATTTGGGTATTGAAGACCCTGAAGTTGGACCTGCAATTGCTTTTGCGATTAGAGAACAGCTCTATGAGATAGCAGTGCAGAATGTTGCTTCAGCAAGAGAAGGCAGAATGAGCAAGAAGGGCCGCCGAGGGTTCGAGCATGTTCCAGTAAGTAAAACTGGAGGTGCTTCGGTGGACTTGGTGAAGTTATTTGGTCATAGATCAAGTGTTGTTCGGAAAAGAAAGGACTGGGACATTTACGAACCAATTGTCGATCTTCTATCCAATGAGGAAGTAGATGCCCTTGAAGCAAAAGAAGAGAGAACTGCTCGATAA MKSSASPHSKAPFKFRIPTAENLVPIRLDIEIDGQRFKDAFTWNPSDPDSEVVVFAKRTVKDLKLPPAFITQIAQSIQSQLTEFRSFEGQDMYTGEKIIPIKLDLRVNNTLIKDQFLWDLNNYESDPEEFSRTLCKDLGIEDPEVGPAIAFAIREQLYEIAVQNVASAREGRMSKKGRRGFEHVPVSKTGGASVDLVKLFGHRSSVVRKRKDWDIYEPIVDLLSNEEVDALEAKEERTAR
BLAST of Cla021836 vs. Swiss-Prot
Match: BSH_ARATH (Chromatin structure-remodeling complex protein BSH OS=Arabidopsis thaliana GN=BSH PE=1 SV=2) HSP 1 Score: 391.0 bits (1003), Expect = 9.6e-108 Identity = 190/240 (79.17%), Postives = 216/240 (90.00%), Query Frame = 1
BLAST of Cla021836 vs. Swiss-Prot
Match: SNF5_XENTR (SWI/SNF-related matrix-associated actin-dependent regulator of chromatin subfamily B member 1 OS=Xenopus tropicalis GN=smarcb1 PE=2 SV=1) HSP 1 Score: 100.5 bits (249), Expect = 2.6e-20 Identity = 59/151 (39.07%), Postives = 88/151 (58.28%), Query Frame = 1
BLAST of Cla021836 vs. Swiss-Prot
Match: SNF5_XENLA (SWI/SNF-related matrix-associated actin-dependent regulator of chromatin subfamily B member 1 OS=Xenopus laevis GN=smarcb1 PE=2 SV=1) HSP 1 Score: 99.8 bits (247), Expect = 4.4e-20 Identity = 59/151 (39.07%), Postives = 87/151 (57.62%), Query Frame = 1
BLAST of Cla021836 vs. Swiss-Prot
Match: SNF5_DANRE (SWI/SNF-related matrix-associated actin-dependent regulator of chromatin subfamily B member 1-A OS=Danio rerio GN=smarcb1a PE=2 SV=1) HSP 1 Score: 99.8 bits (247), Expect = 4.4e-20 Identity = 59/151 (39.07%), Postives = 85/151 (56.29%), Query Frame = 1
BLAST of Cla021836 vs. Swiss-Prot
Match: SNF5_TETFL (SWI/SNF-related matrix-associated actin-dependent regulator of chromatin subfamily B member 1 OS=Tetraodon fluviatilis GN=smarcb1 PE=3 SV=1) HSP 1 Score: 98.6 bits (244), Expect = 9.9e-20 Identity = 58/151 (38.41%), Postives = 87/151 (57.62%), Query Frame = 1
BLAST of Cla021836 vs. TrEMBL
Match: A0A0A0L868_CUCSA (Uncharacterized protein OS=Cucumis sativus GN=Csa_3G171220 PE=4 SV=1) HSP 1 Score: 471.1 bits (1211), Expect = 8.1e-130 Identity = 236/240 (98.33%), Postives = 238/240 (99.17%), Query Frame = 1
BLAST of Cla021836 vs. TrEMBL
Match: A0A068UT17_COFCA (Uncharacterized protein OS=Coffea canephora GN=GSCOC_T00033899001 PE=4 SV=1) HSP 1 Score: 410.6 bits (1054), Expect = 1.3e-111 Identity = 196/232 (84.48%), Postives = 221/232 (95.26%), Query Frame = 1
BLAST of Cla021836 vs. TrEMBL
Match: A0A0B2SIX3_GLYSO (Chromatin structure-remodeling complex protein BSH OS=Glycine soja GN=glysoja_023592 PE=4 SV=1) HSP 1 Score: 407.5 bits (1046), Expect = 1.1e-110 Identity = 200/240 (83.33%), Postives = 220/240 (91.67%), Query Frame = 1
BLAST of Cla021836 vs. TrEMBL
Match: D7RJ53_SOYBN (SNF5 OS=Glycine max GN=SNF5 PE=2 SV=1) HSP 1 Score: 407.5 bits (1046), Expect = 1.1e-110 Identity = 200/240 (83.33%), Postives = 220/240 (91.67%), Query Frame = 1
BLAST of Cla021836 vs. TrEMBL
Match: D7T6B3_VITVI (Putative uncharacterized protein OS=Vitis vinifera GN=VIT_05s0020g01060 PE=4 SV=1) HSP 1 Score: 404.8 bits (1039), Expect = 7.2e-110 Identity = 195/240 (81.25%), Postives = 219/240 (91.25%), Query Frame = 1
BLAST of Cla021836 vs. NCBI nr
Match: gi|449459804|ref|XP_004147636.1| (PREDICTED: chromatin structure-remodeling complex protein BSH isoform X1 [Cucumis sativus]) HSP 1 Score: 471.1 bits (1211), Expect = 1.2e-129 Identity = 236/240 (98.33%), Postives = 238/240 (99.17%), Query Frame = 1
BLAST of Cla021836 vs. NCBI nr
Match: gi|659077056|ref|XP_008439008.1| (PREDICTED: chromatin structure-remodeling complex protein BSH isoform X1 [Cucumis melo]) HSP 1 Score: 468.0 bits (1203), Expect = 9.9e-129 Identity = 234/240 (97.50%), Postives = 237/240 (98.75%), Query Frame = 1
BLAST of Cla021836 vs. NCBI nr
Match: gi|661884808|emb|CDP11571.1| (unnamed protein product [Coffea canephora]) HSP 1 Score: 410.6 bits (1054), Expect = 1.9e-111 Identity = 196/232 (84.48%), Postives = 221/232 (95.26%), Query Frame = 1
BLAST of Cla021836 vs. NCBI nr
Match: gi|359806723|ref|NP_001241294.1| (chromatin structure-remodeling complex protein BSH-like [Glycine max]) HSP 1 Score: 407.5 bits (1046), Expect = 1.6e-110 Identity = 200/240 (83.33%), Postives = 220/240 (91.67%), Query Frame = 1
BLAST of Cla021836 vs. NCBI nr
Match: gi|951002249|ref|XP_014507288.1| (PREDICTED: chromatin structure-remodeling complex protein BSH [Vigna radiata var. radiata]) HSP 1 Score: 407.5 bits (1046), Expect = 1.6e-110 Identity = 199/240 (82.92%), Postives = 219/240 (91.25%), Query Frame = 1
The following BLAST results are available for this feature:
The following terms have been associated with this gene:
GO Assignments
This gene is annotated with the following GO terms.
This gene is associated with the following unigenes:
Analysis Name: InterPro Annotations of watermelon (97103)
Date Performed: 2016-09-28
The following gene(s) are orthologous to this gene: The following gene(s) are paralogous to this gene: None The following block(s) are covering this gene: None |