Cla021836 (gene) Watermelon (97103) v1

NameCla021836
Typegene
OrganismCitrullus. lanatus (Watermelon (97103) v1)
DescriptionSWI/SNF-related matrix-associated actin-dependent regulator of chromatin subfamily B member 1 (AHRD V1 **-- B6T3Y4_MAIZE); contains Interpro domain(s) IPR006939 SNF5/SMARCB1/INI1
LocationChr5 : 6716061 .. 6720049 (+)
The following sequences are available for this feature:

Gene sequence (with intron)

Legend: CDS
Hold the cursor over a type above to highlight its positions in the sequence below.
ATGAAATCTTCGGCCTCACCTCACTCAAAAGCTCCGTTCAAGTTCAGGATGTGAGTTCTTTCTCTCCTTCAACTCCTCTATCAATTGTTCTTTTTCATTGATTTCTCCTTCTTATGGTTTCATATTTCTTTATGTTTTCAATCATTATCGAAGTCCGACGGCGGAGAATCTAGTGCCAATTCGTTTGGACATTGAAATCGACGGTCAGAGGTTCAAAGATGCCTTCACTTGGAACCCTTCTGGTAATTTTGATTACTTACCTTGCTCCTGCTTTTTATGTTTCCTTTTAAATCAACGATGATTCATGTGTAGGAGGGCAGTTTCAGCTTTTGATTGTTCGAGTTTAGGGTTTTCTTTTTTCTCCCTAAATTTATGGTTTACGACTTGGAAAAACTGAATTAATCTGATATTGGCCGCTATGTTGCTGATGCTTTAAAAAAGACTTTGAATACTTCGTTTTGTTTTTACATCTGACTTAATGTCTTCCATTGTGCTTATTCGTTTTGGTGTAATTTTTAAGTGTTTTTGAAAGTGCTTAGTGTGGCGCACTATAGCTCCATAGTCATTGAGAACTTAAACTTATAATTTTGTAGATCTTTTAACTTTAAAAGTATTTCAAAAATTCTTGAACTTTCAATTATGCTTCAAATATAGGTGTATTTAAGATTTTTTTTTCTTTTTTATAATTCACGGATCTACTAAACACAAAATTGAATTTTATATCTAGTAGGGCCTTAAATGTTCAATTTTTTTATACTATAGTAATGTGAATGTTGATAATGTAAAAAAAAAAAAAGAAAAGGACTTATTGGACATGAACTTAAAAGTTCAAAGACTTACTAGACAAAAAATTCAAAGTTTTGGAACCTAGTAAAAGCTTTTTATAGTATAGAGACTAAGTTTGTAATTTAACTTATGACGGATAGATATAAAAAGCAGTATTATGAATAACAAGGTGTTGAAAAATTTAGGAAATTAGAGCTCTTTGTAAGAGGTGGAGGAAAAAAAAAATTCTTAAAGAATATCTGTTAGTTTTCTTACTTAAAGAATTTGAAAAGAAATTAAGAAAAGGGATCTCCATGCACTGAGGGGCCACGGCGTGCTTCATTAATGGTCTCTCACTTTTCAAAGAAGCGCCTAGGCGATTTTGAAGCCACTGCTTGAAATAATATTTCTATTAGACATAAAGAATTTTGAATAATGTAATATTTCTATTCTTACATGCTATTTCTATTAGAGGGTGGTCCGTTATTTTGTGGGCTGCTTTTTTTATATGCCATTGTATTCCTTCATTTTATTTCAATGAAAGTGGTTATTTCTATAAAAAAAAATATTTCTATTAGAATTAACCACATTCCCCATTATTTTCACAGCCGGCTCACTGATGTTCAGAGAAGTTTTGTGCCCCAAGGCTAGCTTTGAGTGACAACATGAGTTTTTAGGATCTTGTTTGATTGCCATTTGATTTTTTGTTTTGAAAATTCACAACTTCTATTCATATAGTCCTCATCTTTCTTGAGGAAACATTTGAATTCTTAGCAAGATTTCAAAAACAAAAACAAGTTTTTAAAAACTGTTTTTTTAGTTTTCAAAGCTTGGCATGAATTTCAAAATATGGTTATGTAGTAAATAACAAACCAAAGAAACTTACAAGTGAAAGTAGTGTTTATTTGTTTAATTTTCAAAAACAAAGAACTAAATGGTTATCAAACATGGGCACTATTATTAAGTTCTTAACATGGGAGCTTGAATCTAGGAATTCAGAGGATATCTTAAAATATCCCAAAACTATAGGCACCCTTGAGGCTTACCTTGAAAATGCCTTTTTTGCTCTTCTAATAATATCTTCAATAGCGTCATTAAATTTTATGTTTACTCTAGATCCCGATTCAGAGGTGGTGGTCTTTGCAAAGAGGACGGTGAAAGATTTAAAGCTTCCTCCAGCATTTATAACACAAATTGCACAATCCATTCAAGTAAGGACAATAGTCATCCGAACCTCCCTCTCTCATTCTTCATGGATCTGAATGGTCAGCCTAAACCATGTTTTTTTTAGATATTATCAACAAAACCTTCCAACTTAAATCAATACCTGTAATGAAATCTTAATGTTCCATCAAATCCACTCATACATTCTCTGGTTTTGTTTATCAGTCACAACTTACAGAATTTCGATCCTTTGAAGGTCAAGATATGTATACTGGTGAAAAGATTATTCCAATCAAGGTTTGTCACACTGGCGTTACAATACCAATCTCTTGACGACTTCCTCCCTTTATCATTATTCTACAGCTTGAGCCAAATAATGCAATTCTGTTTCTTTCTCAGCTTGATCTCCGAGTGAACAATACGCTTATAAAGGATCAGTTTCTGTGGGTAAAAGTTGAATGTGTTCTTGATACATTTGACTGGAACATATATACTTGCTAAGCTTACTTGTGCAATATGATATGCCTTTTAGGACTTGAACAACTATGAGAGTGACCCTGAAGAGTTCTCCAGGACATTATGCAAAGATTTGGGTATTGAAGACCCTGAAGTTGGAGTAAGTGAAGTACAATTGAACATTTAAATGTACAAAATAATTGAACTTTTGGTTCCGTGTAATTTGGTTGCTTCGGTCATGAAAAGACAGCTTTCTACTTTAAAGGGATGGATTGTCAATGAGCTATTTTCATCTAAAGTGTCCTGTATATGCTTTTCTCCAACTATTTGATACCATGAGAATTTCATTTATTTTTGTGAGGTAGCCTGCAATTGCTTTTGCGATTAGAGAACAGCTCTATGAGGTTTGTTTTTTCTTGCCTGTTAAGCCTCCTTTTCCTAAAGACTACTTTTTCTTTTTAGTTCTGTTCATAATCTGAACGATTTATTTCATGACTGCATCTTCATGTGTCTGTGTTCCAGATAGCAGTGCAGAATGTTGCTTCAGCAAGAGAAGGCAGAATGAGCAAGAAGGGCCGCCGAGGGTTCGAGCATGTTCCAGTAAGGTATCTATTTAGATATTCTAACTTGTGCATTGTTCCTCATTCTCTTTGTAATCTGGTGAGTTGCAATGAGACTAAATATTTACCTTTTGCGATGGTGCATTTCTCTGTTTGGTGCAACAGTAAAACTGGAGGTGCTTCGGTGGACTTGGTGAAGTTATTTGGTCATAGATCAAGTGTTGTTCGGTTAGTCTATTCCCTATTTATGATTATTATTATTATTATTATTATTAATTTGGAATGATTAGTCTATTCCTTGTTGCTTATGGATTTTCCCTTCATTTTCTCTCTCTTATCTGACCTAAGAAGGTATATGTATATAATTCGTACATGATTATTTAATACTGCCAGTTATGTTTGTTTCCTGGTATCGTCTGTCTTTATCTTCAAGAGAGAAATCCAAAGTTTTTCAACATCGACCAAGAAGTTTAGGGTGTTTTTGGTTCTTGGGAATCATAAGGTGCTCATGTGAATGACAACTTATCTCAAGTTTTAAAAAGATTCCCACATGTATGAGATATCTAGACATGCTGAGATGTCTTCATATGCAGGTACCTCATTTCCATAACACTTGGTGGGGTTATGGGTATCTATATTTTGGGCATAAAGGAAAAAGATATTATTTGCTCCTTGTGCCCTTTTACCATTTTCCTAAAATTTGTTGCATACTTTCTAATTTTAATTTCTATAGGTAGTAGTTTGAGTATATCATTAATGTTCTTTCTGTTACGGATGAATCTAGAGTCCTAGACTATTTTTATTTTTTCCATTTACACATAACTATTCCCAAGTTTTAGTTTAAAAATTAGTTAAAACTACTCAAAAAAGTACATGAGTTACAAAGCACGTGCTTGTGAAAGTGTAAAAATATGCTTATTGTGGTATACACTAAAATGCAACAGGAAAAGAAAGGACTGGGACATTTACGAACCAATTGTCGATCTTCTATCCAATGAGGAAGTAGATGCCCTTGAAGCAAAAGAAGAGAGAACTGCTCGATAA

mRNA sequence

ATGAAATCTTCGGCCTCACCTCACTCAAAAGCTCCGTTCAAGTTCAGGATTCCGACGGCGGAGAATCTAGTGCCAATTCGTTTGGACATTGAAATCGACGGTCAGAGGTTCAAAGATGCCTTCACTTGGAACCCTTCTGATCCCGATTCAGAGGTGGTGGTCTTTGCAAAGAGGACGGTGAAAGATTTAAAGCTTCCTCCAGCATTTATAACACAAATTGCACAATCCATTCAATCACAACTTACAGAATTTCGATCCTTTGAAGGTCAAGATATGTATACTGGTGAAAAGATTATTCCAATCAAGCTTGATCTCCGAGTGAACAATACGCTTATAAAGGATCAGTTTCTGTGGGACTTGAACAACTATGAGAGTGACCCTGAAGAGTTCTCCAGGACATTATGCAAAGATTTGGGTATTGAAGACCCTGAAGTTGGACCTGCAATTGCTTTTGCGATTAGAGAACAGCTCTATGAGATAGCAGTGCAGAATGTTGCTTCAGCAAGAGAAGGCAGAATGAGCAAGAAGGGCCGCCGAGGGTTCGAGCATGTTCCAGTAAGTAAAACTGGAGGTGCTTCGGTGGACTTGGTGAAGTTATTTGGTCATAGATCAAGTGTTGTTCGGAAAAGAAAGGACTGGGACATTTACGAACCAATTGTCGATCTTCTATCCAATGAGGAAGTAGATGCCCTTGAAGCAAAAGAAGAGAGAACTGCTCGATAA

Coding sequence (CDS)

ATGAAATCTTCGGCCTCACCTCACTCAAAAGCTCCGTTCAAGTTCAGGATTCCGACGGCGGAGAATCTAGTGCCAATTCGTTTGGACATTGAAATCGACGGTCAGAGGTTCAAAGATGCCTTCACTTGGAACCCTTCTGATCCCGATTCAGAGGTGGTGGTCTTTGCAAAGAGGACGGTGAAAGATTTAAAGCTTCCTCCAGCATTTATAACACAAATTGCACAATCCATTCAATCACAACTTACAGAATTTCGATCCTTTGAAGGTCAAGATATGTATACTGGTGAAAAGATTATTCCAATCAAGCTTGATCTCCGAGTGAACAATACGCTTATAAAGGATCAGTTTCTGTGGGACTTGAACAACTATGAGAGTGACCCTGAAGAGTTCTCCAGGACATTATGCAAAGATTTGGGTATTGAAGACCCTGAAGTTGGACCTGCAATTGCTTTTGCGATTAGAGAACAGCTCTATGAGATAGCAGTGCAGAATGTTGCTTCAGCAAGAGAAGGCAGAATGAGCAAGAAGGGCCGCCGAGGGTTCGAGCATGTTCCAGTAAGTAAAACTGGAGGTGCTTCGGTGGACTTGGTGAAGTTATTTGGTCATAGATCAAGTGTTGTTCGGAAAAGAAAGGACTGGGACATTTACGAACCAATTGTCGATCTTCTATCCAATGAGGAAGTAGATGCCCTTGAAGCAAAAGAAGAGAGAACTGCTCGATAA

Protein sequence

MKSSASPHSKAPFKFRIPTAENLVPIRLDIEIDGQRFKDAFTWNPSDPDSEVVVFAKRTVKDLKLPPAFITQIAQSIQSQLTEFRSFEGQDMYTGEKIIPIKLDLRVNNTLIKDQFLWDLNNYESDPEEFSRTLCKDLGIEDPEVGPAIAFAIREQLYEIAVQNVASAREGRMSKKGRRGFEHVPVSKTGGASVDLVKLFGHRSSVVRKRKDWDIYEPIVDLLSNEEVDALEAKEERTAR
BLAST of Cla021836 vs. Swiss-Prot
Match: BSH_ARATH (Chromatin structure-remodeling complex protein BSH OS=Arabidopsis thaliana GN=BSH PE=1 SV=2)

HSP 1 Score: 391.0 bits (1003), Expect = 9.6e-108
Identity = 190/240 (79.17%), Postives = 216/240 (90.00%), Query Frame = 1

Query: 1   MKSSASPHSKAPFKFRIPTAENLVPIRLDIEIDGQRFKDAFTWNPSDPDSEVVVFAKRTV 60
           MK   S   K P KFR+PTAENLVPIRLDI+ +GQR+KDAFTWNPSDPD+EVV+FAKRTV
Sbjct: 1   MKGLVSTGWKGPVKFRMPTAENLVPIRLDIQFEGQRYKDAFTWNPSDPDNEVVIFAKRTV 60

Query: 61  KDLKLPPAFITQIAQSIQSQLTEFRSFEGQDMYTGEKIIPIKLDLRVNNTLIKDQFLWDL 120
           KDLKLP AF+TQIAQSIQSQL++FR++EGQDMYTGEKIIPIKLDLRVN+TLIKDQFLWDL
Sbjct: 61  KDLKLPYAFVTQIAQSIQSQLSDFRAYEGQDMYTGEKIIPIKLDLRVNHTLIKDQFLWDL 120

Query: 121 NNYESDPEEFSRTLCKDLGIEDPEVGPAIAFAIREQLYEIAVQNVASAREGRMSKKGRRG 180
           NN+ESDPEEF+RTLCKDLG+EDPEVGPA+AFAIREQLYEIA+Q+VASARE R+SKKGRRG
Sbjct: 121 NNFESDPEEFARTLCKDLGVEDPEVGPAVAFAIREQLYEIAIQSVASARESRLSKKGRRG 180

Query: 181 FEHVPVSKTGGASVDLVKLFGHRSSVVRKRKDWDIYEPIVDLLSNEEVDALEAKEERTAR 240
            +H   SK  G S+DL+KLF  +SSVVRKRKD D+YEP+VDLL++EEVDALEA+EER AR
Sbjct: 181 SDHGSASKASGLSMDLMKLFSFKSSVVRKRKDLDVYEPVVDLLTSEEVDALEAREERHAR 240

BLAST of Cla021836 vs. Swiss-Prot
Match: SNF5_XENTR (SWI/SNF-related matrix-associated actin-dependent regulator of chromatin subfamily B member 1 OS=Xenopus tropicalis GN=smarcb1 PE=2 SV=1)

HSP 1 Score: 100.5 bits (249), Expect = 2.6e-20
Identity = 59/151 (39.07%), Postives = 88/151 (58.28%), Query Frame = 1

Query: 8   HSKAPFKFRIPTAENLVPIRLDIEIDGQRFKDAFTWNPSDPDSEVVVFAKRTVKDLKLPP 67
           H  A        +E LVPIRLD+EIDGQ+ +DAFTWN ++      +FA+    DL L P
Sbjct: 164 HDPAVIHENAAQSEVLVPIRLDMEIDGQKLRDAFTWNMNEKLMTPEMFAEILCDDLDLNP 223

Query: 68  -AFITQIAQSIQSQLTEFRSFEGQDMYTGEKIIPIKLDLRVNNTLIKDQFLWDLNNYESD 127
            AF+  IA +I+ Q+  + +    +  + +++I IKL++ V N  + DQF WD++  E+ 
Sbjct: 224 LAFVPAIASAIRQQIESYPTDSILEDQSDQRVI-IKLNIHVGNISLVDQFEWDMSEKENS 283

Query: 128 PEEFSRTLCKDLGIEDPEVGPAIAFAIREQL 158
           PE+F+  LC +LG+   E    IA++IR QL
Sbjct: 284 PEKFALKLCSELGL-GGEFVTTIAYSIRGQL 312

BLAST of Cla021836 vs. Swiss-Prot
Match: SNF5_XENLA (SWI/SNF-related matrix-associated actin-dependent regulator of chromatin subfamily B member 1 OS=Xenopus laevis GN=smarcb1 PE=2 SV=1)

HSP 1 Score: 99.8 bits (247), Expect = 4.4e-20
Identity = 59/151 (39.07%), Postives = 87/151 (57.62%), Query Frame = 1

Query: 8   HSKAPFKFRIPTAENLVPIRLDIEIDGQRFKDAFTWNPSDPDSEVVVFAKRTVKDLKLPP 67
           H  A         E LVPIRLD+EIDGQ+ +DAFTWN ++      +FA+    DL L P
Sbjct: 164 HDPAVIHENAAQPEVLVPIRLDMEIDGQKLRDAFTWNMNEKLMTPEMFAEILCDDLDLNP 223

Query: 68  -AFITQIAQSIQSQLTEFRSFEGQDMYTGEKIIPIKLDLRVNNTLIKDQFLWDLNNYESD 127
            AF+  IA +I+ Q+  + +    +  + +++I IKL++ V N  + DQF WD++  E+ 
Sbjct: 224 LAFVPAIASAIRQQIESYPTDSILEDQSDQRVI-IKLNIHVGNISLVDQFEWDMSEKENS 283

Query: 128 PEEFSRTLCKDLGIEDPEVGPAIAFAIREQL 158
           PE+F+  LC +LG+   E    IA++IR QL
Sbjct: 284 PEKFALKLCSELGL-GGEFVTTIAYSIRGQL 312

BLAST of Cla021836 vs. Swiss-Prot
Match: SNF5_DANRE (SWI/SNF-related matrix-associated actin-dependent regulator of chromatin subfamily B member 1-A OS=Danio rerio GN=smarcb1a PE=2 SV=1)

HSP 1 Score: 99.8 bits (247), Expect = 4.4e-20
Identity = 59/151 (39.07%), Postives = 85/151 (56.29%), Query Frame = 1

Query: 8   HSKAPFKFRIPTAENLVPIRLDIEIDGQRFKDAFTWNPSDPDSEVVVFAKRTVKDLKLPP 67
           H  A         E LVPIRLD+EIDGQ+ +DAFTWN ++      +FA+    DL L P
Sbjct: 159 HDPAVIHENASQQEVLVPIRLDMEIDGQKLRDAFTWNMNEKLMTPEMFAEILCDDLDLSP 218

Query: 68  -AFITQIAQSIQSQLTEFRSFEGQDMYTGEKIIPIKLDLRVNNTLIKDQFLWDLNNYESD 127
             F+  IA +I+ Q+  + +    D    +++I IKL++ V N  + DQF WD++  E+ 
Sbjct: 219 LTFVPAIASAIRQQIESYPTDSILDEQMDQRVI-IKLNIHVGNISLVDQFEWDMSEKENS 278

Query: 128 PEEFSRTLCKDLGIEDPEVGPAIAFAIREQL 158
           PE+F+  LC +LG+   E    IA++IR QL
Sbjct: 279 PEKFALKLCSELGL-GGEFVTTIAYSIRGQL 307

BLAST of Cla021836 vs. Swiss-Prot
Match: SNF5_TETFL (SWI/SNF-related matrix-associated actin-dependent regulator of chromatin subfamily B member 1 OS=Tetraodon fluviatilis GN=smarcb1 PE=3 SV=1)

HSP 1 Score: 98.6 bits (244), Expect = 9.9e-20
Identity = 58/151 (38.41%), Postives = 87/151 (57.62%), Query Frame = 1

Query: 8   HSKAPFKFRIPTAENLVPIRLDIEIDGQRFKDAFTWNPSDPDSEVVVFAKRTVKDLKLPP 67
           H  A        +E LVPIRLD+EI+GQ+ +DAFTWN ++      +FA+    DL L P
Sbjct: 159 HDPAVIHENASQSEVLVPIRLDMEIEGQKLRDAFTWNMNEKLMTPEMFAEILCDDLDLNP 218

Query: 68  -AFITQIAQSIQSQLTEFRSFEGQDMYTGEKIIPIKLDLRVNNTLIKDQFLWDLNNYESD 127
            AF+  I  +I+ Q+  + +    +  T +++I IKL++ V N  + DQF WD++  E+ 
Sbjct: 219 LAFVPAIPSAIRQQIESYPTDAILEEQTDQRVI-IKLNIHVGNISLVDQFEWDMSEKENS 278

Query: 128 PEEFSRTLCKDLGIEDPEVGPAIAFAIREQL 158
           PE+F+  LC +LG +  E    IA++IR QL
Sbjct: 279 PEKFALKLCSELG-QGGEFVTTIAYSIRGQL 307

BLAST of Cla021836 vs. TrEMBL
Match: A0A0A0L868_CUCSA (Uncharacterized protein OS=Cucumis sativus GN=Csa_3G171220 PE=4 SV=1)

HSP 1 Score: 471.1 bits (1211), Expect = 8.1e-130
Identity = 236/240 (98.33%), Postives = 238/240 (99.17%), Query Frame = 1

Query: 1   MKSSASPHSKAPFKFRIPTAENLVPIRLDIEIDGQRFKDAFTWNPSDPDSEVVVFAKRTV 60
           MK+SASPHSKAPFKFRIPTAENLVPIRLDIEIDGQRFKDAFTWNPSDPDSEVVVFAKRTV
Sbjct: 1   MKASASPHSKAPFKFRIPTAENLVPIRLDIEIDGQRFKDAFTWNPSDPDSEVVVFAKRTV 60

Query: 61  KDLKLPPAFITQIAQSIQSQLTEFRSFEGQDMYTGEKIIPIKLDLRVNNTLIKDQFLWDL 120
           KDLKLPPAFITQIAQSIQSQLTEFRSFEGQDMYTGEKIIPIKLDLRVNNTLIKDQFLWDL
Sbjct: 61  KDLKLPPAFITQIAQSIQSQLTEFRSFEGQDMYTGEKIIPIKLDLRVNNTLIKDQFLWDL 120

Query: 121 NNYESDPEEFSRTLCKDLGIEDPEVGPAIAFAIREQLYEIAVQNVASAREGRMSKKGRRG 180
           NNYESDPEEFSRTLCKDLGI+DPEVGPAIA AIREQLYEIAVQNVASARE RMSKKGRRG
Sbjct: 121 NNYESDPEEFSRTLCKDLGIDDPEVGPAIAVAIREQLYEIAVQNVASARESRMSKKGRRG 180

Query: 181 FEHVPVSKTGGASVDLVKLFGHRSSVVRKRKDWDIYEPIVDLLSNEEVDALEAKEERTAR 240
           FEHVPVSKTGGASVDLVKLFGHRSSVVRKRKDWDIYEPIVDLLSNEEVDALEAKEERTAR
Sbjct: 181 FEHVPVSKTGGASVDLVKLFGHRSSVVRKRKDWDIYEPIVDLLSNEEVDALEAKEERTAR 240

BLAST of Cla021836 vs. TrEMBL
Match: A0A068UT17_COFCA (Uncharacterized protein OS=Coffea canephora GN=GSCOC_T00033899001 PE=4 SV=1)

HSP 1 Score: 410.6 bits (1054), Expect = 1.3e-111
Identity = 196/232 (84.48%), Postives = 221/232 (95.26%), Query Frame = 1

Query: 9   SKAPFKFRIPTAENLVPIRLDIEIDGQRFKDAFTWNPSDPDSEVVVFAKRTVKDLKLPPA 68
           S+ P KFRIPT++NL+PIRLDIEIDGQRF+DAFTWNPSDPDSEVVVFAKRTVKDLKLPPA
Sbjct: 10  SRNPVKFRIPTSDNLLPIRLDIEIDGQRFRDAFTWNPSDPDSEVVVFAKRTVKDLKLPPA 69

Query: 69  FITQIAQSIQSQLTEFRSFEGQDMYTGEKIIPIKLDLRVNNTLIKDQFLWDLNNYESDPE 128
           FITQIAQSIQSQLTEFRS+EGQDMYTGE+++PIKLDLRVN+TLIKDQFLWDLNN+ESDPE
Sbjct: 70  FITQIAQSIQSQLTEFRSYEGQDMYTGERVVPIKLDLRVNHTLIKDQFLWDLNNFESDPE 129

Query: 129 EFSRTLCKDLGIEDPEVGPAIAFAIREQLYEIAVQNVASAREGRMSKKGRRGFEHVPVSK 188
           EF+RT CKD+GIEDPEVGPAIA AIREQLYEIAVQ+VASA+E RM KKGR+GFEH+P+SK
Sbjct: 130 EFARTFCKDMGIEDPEVGPAIAIAIREQLYEIAVQSVASAKESRMIKKGRKGFEHIPISK 189

Query: 189 TGGASVDLVKLFGHRSSVVRKRKDWDIYEPIVDLLSNEEVDALEAKEERTAR 241
            GG +VDLVK FG++SSV+RKRK+WD++EPIVDLLSNEEVDALEA EER AR
Sbjct: 190 AGGIAVDLVKSFGNKSSVIRKRKEWDVFEPIVDLLSNEEVDALEATEERNAR 241

BLAST of Cla021836 vs. TrEMBL
Match: A0A0B2SIX3_GLYSO (Chromatin structure-remodeling complex protein BSH OS=Glycine soja GN=glysoja_023592 PE=4 SV=1)

HSP 1 Score: 407.5 bits (1046), Expect = 1.1e-110
Identity = 200/240 (83.33%), Postives = 220/240 (91.67%), Query Frame = 1

Query: 1   MKSSASPHSKAPFKFRIPTAENLVPIRLDIEIDGQRFKDAFTWNPSDPDSEVVVFAKRTV 60
           MK+  S   + P KFR+PTAENLVPIRLDIEI+GQR+KDAFTWNPSDPDSEVVVFAKRTV
Sbjct: 1   MKTPISGFYRNPVKFRMPTAENLVPIRLDIEIEGQRYKDAFTWNPSDPDSEVVVFAKRTV 60

Query: 61  KDLKLPPAFITQIAQSIQSQLTEFRSFEGQDMYTGEKIIPIKLDLRVNNTLIKDQFLWDL 120
           KDLKLPPAF+TQIAQSIQSQL+EFRS+EGQDMY GEKI+PIKLDLRVN+TL+KDQFLWDL
Sbjct: 61  KDLKLPPAFVTQIAQSIQSQLSEFRSYEGQDMYAGEKIVPIKLDLRVNHTLVKDQFLWDL 120

Query: 121 NNYESDPEEFSRTLCKDLGIEDPEVGPAIAFAIREQLYEIAVQNVASAREGRMSKKGRRG 180
           NN+ESDPEEF+R  CKD GIEDPEVGPAIAFAIREQLYEIA+Q+V SARE RMSKKGRRG
Sbjct: 121 NNFESDPEEFARIFCKDTGIEDPEVGPAIAFAIREQLYEIAIQSVVSARESRMSKKGRRG 180

Query: 181 FEHVPVSKTGGASVDLVKLFGHRSSVVRKRKDWDIYEPIVDLLSNEEVDALEAKEERTAR 240
            E+ PVSK G A+VDLVKLFG +SSVVRKRK+WD+YEPIVDLLSNEEVDALEAKEER  R
Sbjct: 181 AEYTPVSKGGAAAVDLVKLFGPKSSVVRKRKEWDVYEPIVDLLSNEEVDALEAKEERNFR 240

BLAST of Cla021836 vs. TrEMBL
Match: D7RJ53_SOYBN (SNF5 OS=Glycine max GN=SNF5 PE=2 SV=1)

HSP 1 Score: 407.5 bits (1046), Expect = 1.1e-110
Identity = 200/240 (83.33%), Postives = 220/240 (91.67%), Query Frame = 1

Query: 1   MKSSASPHSKAPFKFRIPTAENLVPIRLDIEIDGQRFKDAFTWNPSDPDSEVVVFAKRTV 60
           MK+  S   + P KFR+PTAENLVPIRLDIEI+GQR+KDAFTWNPSDPDSEVVVFAKRTV
Sbjct: 1   MKTPISGFYRNPVKFRMPTAENLVPIRLDIEIEGQRYKDAFTWNPSDPDSEVVVFAKRTV 60

Query: 61  KDLKLPPAFITQIAQSIQSQLTEFRSFEGQDMYTGEKIIPIKLDLRVNNTLIKDQFLWDL 120
           KDLKLPPAF+TQIAQSIQSQL+EFRS+EGQDMY GEKI+PIKLDLRVN+TL+KDQFLWDL
Sbjct: 61  KDLKLPPAFVTQIAQSIQSQLSEFRSYEGQDMYAGEKIVPIKLDLRVNHTLVKDQFLWDL 120

Query: 121 NNYESDPEEFSRTLCKDLGIEDPEVGPAIAFAIREQLYEIAVQNVASAREGRMSKKGRRG 180
           NN+ESDPEEF+R  CKD GIEDPEVGPAIAFAIREQLYEIA+Q+V SARE RMSKKGRRG
Sbjct: 121 NNFESDPEEFARIFCKDTGIEDPEVGPAIAFAIREQLYEIAIQSVVSARESRMSKKGRRG 180

Query: 181 FEHVPVSKTGGASVDLVKLFGHRSSVVRKRKDWDIYEPIVDLLSNEEVDALEAKEERTAR 240
            E+ PVSK G A+VDLVKLFG +SSVVRKRK+WD+YEPIVDLLSNEEVDALEAKEER  R
Sbjct: 181 AEYTPVSKGGAAAVDLVKLFGPKSSVVRKRKEWDVYEPIVDLLSNEEVDALEAKEERNFR 240

BLAST of Cla021836 vs. TrEMBL
Match: D7T6B3_VITVI (Putative uncharacterized protein OS=Vitis vinifera GN=VIT_05s0020g01060 PE=4 SV=1)

HSP 1 Score: 404.8 bits (1039), Expect = 7.2e-110
Identity = 195/240 (81.25%), Postives = 219/240 (91.25%), Query Frame = 1

Query: 1   MKSSASPHSKAPFKFRIPTAENLVPIRLDIEIDGQRFKDAFTWNPSDPDSEVVVFAKRTV 60
           MK   S  SK P KFR+PTA+NLVPIRLDIEIDG RFKDAFTWNPSDPDSEVVVFAKRTV
Sbjct: 1   MKPLPSTSSKNPVKFRMPTADNLVPIRLDIEIDGHRFKDAFTWNPSDPDSEVVVFAKRTV 60

Query: 61  KDLKLPPAFITQIAQSIQSQLTEFRSFEGQDMYTGEKIIPIKLDLRVNNTLIKDQFLWDL 120
           KDLKLPPAFITQIAQSIQSQL EFRSFEGQDM TGEKI+PIKLDLRVN+TLIKDQFLWDL
Sbjct: 61  KDLKLPPAFITQIAQSIQSQLAEFRSFEGQDMQTGEKIVPIKLDLRVNHTLIKDQFLWDL 120

Query: 121 NNYESDPEEFSRTLCKDLGIEDPEVGPAIAFAIREQLYEIAVQNVASAREGRMSKKGRRG 180
           NN+ESDPEEF+RT CKDLG+EDPEVGPAIA AIREQLYEIA+Q+V SARE R+SKKGRRG
Sbjct: 121 NNFESDPEEFARTFCKDLGVEDPEVGPAIAVAIREQLYEIAIQSVTSARETRISKKGRRG 180

Query: 181 FEHVPVSKTGGASVDLVKLFGHRSSVVRKRKDWDIYEPIVDLLSNEEVDALEAKEERTAR 240
            EH+P SK  G ++DL+KLFG++SS++RKR++WD+YEPIVD+LSNEEVD LEA+E+R AR
Sbjct: 181 AEHIPASKASGTALDLMKLFGNKSSIIRKRREWDVYEPIVDILSNEEVDVLEAREDRNAR 240

BLAST of Cla021836 vs. NCBI nr
Match: gi|449459804|ref|XP_004147636.1| (PREDICTED: chromatin structure-remodeling complex protein BSH isoform X1 [Cucumis sativus])

HSP 1 Score: 471.1 bits (1211), Expect = 1.2e-129
Identity = 236/240 (98.33%), Postives = 238/240 (99.17%), Query Frame = 1

Query: 1   MKSSASPHSKAPFKFRIPTAENLVPIRLDIEIDGQRFKDAFTWNPSDPDSEVVVFAKRTV 60
           MK+SASPHSKAPFKFRIPTAENLVPIRLDIEIDGQRFKDAFTWNPSDPDSEVVVFAKRTV
Sbjct: 1   MKASASPHSKAPFKFRIPTAENLVPIRLDIEIDGQRFKDAFTWNPSDPDSEVVVFAKRTV 60

Query: 61  KDLKLPPAFITQIAQSIQSQLTEFRSFEGQDMYTGEKIIPIKLDLRVNNTLIKDQFLWDL 120
           KDLKLPPAFITQIAQSIQSQLTEFRSFEGQDMYTGEKIIPIKLDLRVNNTLIKDQFLWDL
Sbjct: 61  KDLKLPPAFITQIAQSIQSQLTEFRSFEGQDMYTGEKIIPIKLDLRVNNTLIKDQFLWDL 120

Query: 121 NNYESDPEEFSRTLCKDLGIEDPEVGPAIAFAIREQLYEIAVQNVASAREGRMSKKGRRG 180
           NNYESDPEEFSRTLCKDLGI+DPEVGPAIA AIREQLYEIAVQNVASARE RMSKKGRRG
Sbjct: 121 NNYESDPEEFSRTLCKDLGIDDPEVGPAIAVAIREQLYEIAVQNVASARESRMSKKGRRG 180

Query: 181 FEHVPVSKTGGASVDLVKLFGHRSSVVRKRKDWDIYEPIVDLLSNEEVDALEAKEERTAR 240
           FEHVPVSKTGGASVDLVKLFGHRSSVVRKRKDWDIYEPIVDLLSNEEVDALEAKEERTAR
Sbjct: 181 FEHVPVSKTGGASVDLVKLFGHRSSVVRKRKDWDIYEPIVDLLSNEEVDALEAKEERTAR 240

BLAST of Cla021836 vs. NCBI nr
Match: gi|659077056|ref|XP_008439008.1| (PREDICTED: chromatin structure-remodeling complex protein BSH isoform X1 [Cucumis melo])

HSP 1 Score: 468.0 bits (1203), Expect = 9.9e-129
Identity = 234/240 (97.50%), Postives = 237/240 (98.75%), Query Frame = 1

Query: 1   MKSSASPHSKAPFKFRIPTAENLVPIRLDIEIDGQRFKDAFTWNPSDPDSEVVVFAKRTV 60
           MK+SASPHSKAPFKFRIPTAENLVPIRLDIEIDGQRFKDAFTWNPSDPDSEVVVFAKRTV
Sbjct: 1   MKASASPHSKAPFKFRIPTAENLVPIRLDIEIDGQRFKDAFTWNPSDPDSEVVVFAKRTV 60

Query: 61  KDLKLPPAFITQIAQSIQSQLTEFRSFEGQDMYTGEKIIPIKLDLRVNNTLIKDQFLWDL 120
           KDLKLPPAFITQIAQSIQSQLTEFRSFEGQDMYTGEKIIPIKLDLRVNNT+IKDQFLWDL
Sbjct: 61  KDLKLPPAFITQIAQSIQSQLTEFRSFEGQDMYTGEKIIPIKLDLRVNNTIIKDQFLWDL 120

Query: 121 NNYESDPEEFSRTLCKDLGIEDPEVGPAIAFAIREQLYEIAVQNVASAREGRMSKKGRRG 180
           NNYESDPEEFSRTLCKDLGI+DPEVGPAIA AIREQLYEIAVQNVASARE RMSKKGRRG
Sbjct: 121 NNYESDPEEFSRTLCKDLGIDDPEVGPAIAVAIREQLYEIAVQNVASARESRMSKKGRRG 180

Query: 181 FEHVPVSKTGGASVDLVKLFGHRSSVVRKRKDWDIYEPIVDLLSNEEVDALEAKEERTAR 240
           FEHVPVSKTGGASVDLVKLFGHRSSVVRKRKDWDIYEPIVDLLSNEEVDALEAKEER AR
Sbjct: 181 FEHVPVSKTGGASVDLVKLFGHRSSVVRKRKDWDIYEPIVDLLSNEEVDALEAKEERIAR 240

BLAST of Cla021836 vs. NCBI nr
Match: gi|661884808|emb|CDP11571.1| (unnamed protein product [Coffea canephora])

HSP 1 Score: 410.6 bits (1054), Expect = 1.9e-111
Identity = 196/232 (84.48%), Postives = 221/232 (95.26%), Query Frame = 1

Query: 9   SKAPFKFRIPTAENLVPIRLDIEIDGQRFKDAFTWNPSDPDSEVVVFAKRTVKDLKLPPA 68
           S+ P KFRIPT++NL+PIRLDIEIDGQRF+DAFTWNPSDPDSEVVVFAKRTVKDLKLPPA
Sbjct: 10  SRNPVKFRIPTSDNLLPIRLDIEIDGQRFRDAFTWNPSDPDSEVVVFAKRTVKDLKLPPA 69

Query: 69  FITQIAQSIQSQLTEFRSFEGQDMYTGEKIIPIKLDLRVNNTLIKDQFLWDLNNYESDPE 128
           FITQIAQSIQSQLTEFRS+EGQDMYTGE+++PIKLDLRVN+TLIKDQFLWDLNN+ESDPE
Sbjct: 70  FITQIAQSIQSQLTEFRSYEGQDMYTGERVVPIKLDLRVNHTLIKDQFLWDLNNFESDPE 129

Query: 129 EFSRTLCKDLGIEDPEVGPAIAFAIREQLYEIAVQNVASAREGRMSKKGRRGFEHVPVSK 188
           EF+RT CKD+GIEDPEVGPAIA AIREQLYEIAVQ+VASA+E RM KKGR+GFEH+P+SK
Sbjct: 130 EFARTFCKDMGIEDPEVGPAIAIAIREQLYEIAVQSVASAKESRMIKKGRKGFEHIPISK 189

Query: 189 TGGASVDLVKLFGHRSSVVRKRKDWDIYEPIVDLLSNEEVDALEAKEERTAR 241
            GG +VDLVK FG++SSV+RKRK+WD++EPIVDLLSNEEVDALEA EER AR
Sbjct: 190 AGGIAVDLVKSFGNKSSVIRKRKEWDVFEPIVDLLSNEEVDALEATEERNAR 241

BLAST of Cla021836 vs. NCBI nr
Match: gi|359806723|ref|NP_001241294.1| (chromatin structure-remodeling complex protein BSH-like [Glycine max])

HSP 1 Score: 407.5 bits (1046), Expect = 1.6e-110
Identity = 200/240 (83.33%), Postives = 220/240 (91.67%), Query Frame = 1

Query: 1   MKSSASPHSKAPFKFRIPTAENLVPIRLDIEIDGQRFKDAFTWNPSDPDSEVVVFAKRTV 60
           MK+  S   + P KFR+PTAENLVPIRLDIEI+GQR+KDAFTWNPSDPDSEVVVFAKRTV
Sbjct: 1   MKTPISGFYRNPVKFRMPTAENLVPIRLDIEIEGQRYKDAFTWNPSDPDSEVVVFAKRTV 60

Query: 61  KDLKLPPAFITQIAQSIQSQLTEFRSFEGQDMYTGEKIIPIKLDLRVNNTLIKDQFLWDL 120
           KDLKLPPAF+TQIAQSIQSQL+EFRS+EGQDMY GEKI+PIKLDLRVN+TL+KDQFLWDL
Sbjct: 61  KDLKLPPAFVTQIAQSIQSQLSEFRSYEGQDMYAGEKIVPIKLDLRVNHTLVKDQFLWDL 120

Query: 121 NNYESDPEEFSRTLCKDLGIEDPEVGPAIAFAIREQLYEIAVQNVASAREGRMSKKGRRG 180
           NN+ESDPEEF+R  CKD GIEDPEVGPAIAFAIREQLYEIA+Q+V SARE RMSKKGRRG
Sbjct: 121 NNFESDPEEFARIFCKDTGIEDPEVGPAIAFAIREQLYEIAIQSVVSARESRMSKKGRRG 180

Query: 181 FEHVPVSKTGGASVDLVKLFGHRSSVVRKRKDWDIYEPIVDLLSNEEVDALEAKEERTAR 240
            E+ PVSK G A+VDLVKLFG +SSVVRKRK+WD+YEPIVDLLSNEEVDALEAKEER  R
Sbjct: 181 AEYTPVSKGGAAAVDLVKLFGPKSSVVRKRKEWDVYEPIVDLLSNEEVDALEAKEERNFR 240

BLAST of Cla021836 vs. NCBI nr
Match: gi|951002249|ref|XP_014507288.1| (PREDICTED: chromatin structure-remodeling complex protein BSH [Vigna radiata var. radiata])

HSP 1 Score: 407.5 bits (1046), Expect = 1.6e-110
Identity = 199/240 (82.92%), Postives = 219/240 (91.25%), Query Frame = 1

Query: 1   MKSSASPHSKAPFKFRIPTAENLVPIRLDIEIDGQRFKDAFTWNPSDPDSEVVVFAKRTV 60
           MK+  S   + P KFR+PTAENLVPIRLDIEIDGQR+KDAFTWNPSDPDSEVVVFAKRTV
Sbjct: 1   MKTPISGFYRNPVKFRMPTAENLVPIRLDIEIDGQRYKDAFTWNPSDPDSEVVVFAKRTV 60

Query: 61  KDLKLPPAFITQIAQSIQSQLTEFRSFEGQDMYTGEKIIPIKLDLRVNNTLIKDQFLWDL 120
           KDLKLPPAF+TQIAQSIQSQL EFRS+EGQDMY GEKI+PIKLDLRVN+TL+KDQFLWDL
Sbjct: 61  KDLKLPPAFVTQIAQSIQSQLLEFRSYEGQDMYAGEKIVPIKLDLRVNHTLVKDQFLWDL 120

Query: 121 NNYESDPEEFSRTLCKDLGIEDPEVGPAIAFAIREQLYEIAVQNVASAREGRMSKKGRRG 180
           NN+ESDPEEF+R  CKD+GIEDPEVGPAIAFAIREQLYEIA+Q+V SARE RMSKKGRRG
Sbjct: 121 NNFESDPEEFARIFCKDMGIEDPEVGPAIAFAIREQLYEIAIQSVVSARESRMSKKGRRG 180

Query: 181 FEHVPVSKTGGASVDLVKLFGHRSSVVRKRKDWDIYEPIVDLLSNEEVDALEAKEERTAR 240
            E+ P+SK G  +VDLVKLFG +SSVVRKRK+WD+YEPIVDLLSNEEVDALEAKEER  R
Sbjct: 181 AEYTPISKGGAVAVDLVKLFGPKSSVVRKRKEWDVYEPIVDLLSNEEVDALEAKEERNFR 240

The following BLAST results are available for this feature:
Match NameE-valueIdentityDescription
BSH_ARATH9.6e-10879.17Chromatin structure-remodeling complex protein BSH OS=Arabidopsis thaliana GN=BS... [more]
SNF5_XENTR2.6e-2039.07SWI/SNF-related matrix-associated actin-dependent regulator of chromatin subfami... [more]
SNF5_XENLA4.4e-2039.07SWI/SNF-related matrix-associated actin-dependent regulator of chromatin subfami... [more]
SNF5_DANRE4.4e-2039.07SWI/SNF-related matrix-associated actin-dependent regulator of chromatin subfami... [more]
SNF5_TETFL9.9e-2038.41SWI/SNF-related matrix-associated actin-dependent regulator of chromatin subfami... [more]
Match NameE-valueIdentityDescription
A0A0A0L868_CUCSA8.1e-13098.33Uncharacterized protein OS=Cucumis sativus GN=Csa_3G171220 PE=4 SV=1[more]
A0A068UT17_COFCA1.3e-11184.48Uncharacterized protein OS=Coffea canephora GN=GSCOC_T00033899001 PE=4 SV=1[more]
A0A0B2SIX3_GLYSO1.1e-11083.33Chromatin structure-remodeling complex protein BSH OS=Glycine soja GN=glysoja_02... [more]
D7RJ53_SOYBN1.1e-11083.33SNF5 OS=Glycine max GN=SNF5 PE=2 SV=1[more]
D7T6B3_VITVI7.2e-11081.25Putative uncharacterized protein OS=Vitis vinifera GN=VIT_05s0020g01060 PE=4 SV=... [more]
Match NameE-valueIdentityDescription
gi|449459804|ref|XP_004147636.1|1.2e-12998.33PREDICTED: chromatin structure-remodeling complex protein BSH isoform X1 [Cucumi... [more]
gi|659077056|ref|XP_008439008.1|9.9e-12997.50PREDICTED: chromatin structure-remodeling complex protein BSH isoform X1 [Cucumi... [more]
gi|661884808|emb|CDP11571.1|1.9e-11184.48unnamed protein product [Coffea canephora][more]
gi|359806723|ref|NP_001241294.1|1.6e-11083.33chromatin structure-remodeling complex protein BSH-like [Glycine max][more]
gi|951002249|ref|XP_014507288.1|1.6e-11082.92PREDICTED: chromatin structure-remodeling complex protein BSH [Vigna radiata var... [more]
The following terms have been associated with this gene:
Vocabulary: INTERPRO
TermDefinition
IPR006939SNF5
Vocabulary: Cellular Component
TermDefinition
GO:0000228nuclear chromosome
Vocabulary: Biological Process
TermDefinition
GO:0006338chromatin remodeling
GO Assignments
This gene is annotated with the following GO terms.
Category Term Accession Term Name
biological_process GO:0006338 chromatin remodeling
biological_process GO:0043044 ATP-dependent chromatin remodeling
biological_process GO:0006281 DNA repair
biological_process GO:0006337 nucleosome disassembly
biological_process GO:0006357 regulation of transcription from RNA polymerase II promoter
cellular_component GO:0000228 nuclear chromosome
cellular_component GO:0016514 SWI/SNF complex
molecular_function GO:0003674 molecular_function
This gene is associated with the following unigenes:
Unigene NameAnalysis NameSequence type in Unigene
WMU41340watermelon EST collection version 2.0transcribed_cluster
WMU57527watermelon EST collection version 2.0transcribed_cluster

The following mRNA feature(s) are a part of this gene:

Feature NameUnique NameType
Cla021836Cla021836.1mRNA


The following transcribed_cluster feature(s) are associated with this gene:

Feature NameUnique NameType
WMU57527WMU57527transcribed_cluster
WMU41340WMU41340transcribed_cluster


Analysis Name: InterPro Annotations of watermelon (97103)
Date Performed: 2016-09-28
IPR TermIPR DescriptionSourceSource TermSource DescriptionAlignment
IPR006939SNF5/SMARCB1/INI1PANTHERPTHR10019SNF5coord: 1..240
score: 3.4E
IPR006939SNF5/SMARCB1/INI1PFAMPF04855SNF5coord: 99..240
score: 5.2E-18coord: 20..86
score: 1.5