CmaCh14G015520 (gene) Cucurbita maxima (Rimu) | Cucurbit Genomics Database (CuGenDB)

Overview


Name	CmaCh14G015520
Type	gene
Organism	Cucurbita maxima (Cucurbita maxima (Rimu))
Description	Bushy growth protein
Location	Cma_Chr14 : 11691970 .. 11696363 (-)

Genome Viewer

Gene Expression

Sequences

The following sequences are available for this feature:

Gene sequence (with intron)

Legend: CDSexonthree_prime_UTR

Hold the cursor over a type above to highlight its positions in the sequence below.

ATGCCTTCACCTGGGACTCTTCTGGTAATTTTCATTGCTTACCTTGGTTGTGCCTGTTATGTTTCCTTCTAAATCAGGGATGATTCGTTTGTAGGTTAGTTTCAGCTCTTGACTGCTCGAATTTAGGTTTTATATTTTTCTCCCTAAATTTAGGATTTCTGAGTTGTAATACTGAATTAATCACTGTTTTACCAATGATTTTGGCCGCCGTATTGCTGATACTTTAATGGACTTGTAAACTTCGTTTGGTTTAAATATCTGACTTAATGTCTTCCATTGTGACTGTTTTGGTTTAGTATTTAGGCCTGAAATCAGTGTTTTGAAAGTTCTTAGTATGGCGAACTAAAGCACGGTAGACATTGAGAACGCAAAATGTTGTTGGATGAAAGCCCCACATTGACTAATTTAGGGAATGATCATGGATTTATAATCAAGGAATACTATTTCCATTGGTGTGAGGCCTTTGGGGAAGCCCAAAGCAAAGCTATGAGAGTTTATGCTCAAAGTGGACAATATCATACTATTGTGGAGAGTCGTGGTCATCTAACATGGTATTAGAGTCATGCCCTAAACTTAGTCATGTCAATAGAATCCTCAAATGTTGAACAAAGGACTCCAAAAGAAAAGGAGTCGAGGCTCCTCGAAGGCATGGTAAAAAATGACCAAGGCTCCAAAAGAAAAAGGAGTCAAGCCTCGATTAAGAGGAGGGTACTTTGTTCGAGGGGAGATGTTGGATGAAAGTCCCACATCGGCTAATTTAGGGAATGATCATGGGTTTATAATCAAGGAATATTATCTCCATTGGTGTGAGGCCTTTTGGGGAAGCCCAAAGCAAAGCGATGAAAGCTTATGCTCAAAGTGGACAATATCACAACATTGTGGATAGTCGTGTTCATCTAATAAGTGTGAGTCATTTTGTGTTAAATAGGCCTATGGTGTATTTGATATATATATATATTTTTTAATTAACATATCTATTAAACATAAAATTGAGTTTTGTGTCTAGTGATGCTTTAAACTTTCAATTTTGTATACAATAGCTCTTTGAATTTTAAATAATGTCAAATATTTCAAAGACGTATTAAACACAAAATTAAAAAATTTAAGGACTTTTTAAATATTAATTTGAAAGTTTAGAGACTTATTAGAGATTCAATGACTAATAAAAAAAAATTTGAAAGTTCTGAGATATATTTAAAAAAATTTATAATACCAACGACTAAACTTGTAATTTAACTTAAAATTTATACAAATGAAAAATTGTATTATCGACGATTAAGGCATTGGAAAAGTTCAGAAATTAGAGCTTTTTGTAAGAGGTGGGGGAGAAAAACAATCATTTTCTTTAAAAATCTTTGTTAGTTTCTCCATGCTTTAATTTTGTCATTTGGAAAAGGAGGTTGAAAGAACTTTCTCATAGAGTTTAATCATTCTCAGGCTTTATGAGAGACTTTAAATTATATGAATGACTTGTTATGCATTTTGTATCTTAAAACGTTCCAAAACCACTGGCACCTACCATTGAGGGTTTACTTGAAAATGCCTCTTTTGCTCTTCTGATAATATCTTCAGTAACGTCATGATATTTGATGTTTACTCTAGATCCAGATTCAGAGGGTGCTCTTTGCAAAGAGGACGGTGAAAGATTTAAAGCTTCCCCCGTTATTTATAACACAAATTGCACAATCCATTCAAGTAAGGATAATAGTCATCCGCGTCTCTCTCTCCCATTCTTCAAGGATTTGAATGGTCAGCCTAAACCATGTCTCCTTTAGATATTAACAACAAAACCTTATAACTTATAGATCATTACATATAATGAAATCTTGACTTGCCATCAAATTTATCATGTTTTCTCTTGGGTTTTGCTTATCAGTTGCAACTTACAGAATTTCAATCCTTTGAAGGTCAAGATATGTATAGTGGTGAAACGGTCATTTCAATCAAAATTTGTCTAGTTTGCGTTAACAATGCCAATCTCTTGACAACTATCTCCCTTTGTCATTATTCAACAGCTTGATGCCAAATAATGCAATTTTATTTTCTTTCCCAGCTTGATCTCCGAGTGAACAATACCCTCATAAAAGATCAGTTTCTGTGGGTAAAGTTGAGCATACTCTTGATACATTTGACTGGAACAAATACTTATTCAGCTTACTTGTGCAAAATGATATATTTTTTAGGACTTGAACAACTATGAGAGCGACCCTGAAGAGTTTTCCATGACATTCTGCAAAGATTTGGGTATTGAAGACCCTGAAGTAGGAGTGAGTAAAGATCAATTGAATATGTAACTGTTATGTACAAAGTTAGAACTGTTTGTTCCAGGTAAATTGGTTCCTTCGGTTGTGAAAAGGCAGCATTCCATGTTAAAGGGATGGATTATCAATGAGATATTTTCGCCTAAATTGTCATCCTGCACATGTTTTTCTCCAACTATTTGATACTAAGAGAATTTCATTTATTTTTGTAAGGTAGCCTGCAATTGCTTTTGTAATTAGAGAACAGCTCTATGAGGTTATTTTTTTCTTGCCTGTTAAAGCCTCCTTCTCCTCAAAACTATTTCTTTTTTCTAATTCTCTTCACAATCTGAGTGATTTATTTCATCACTGCATCTTCATGTGTCTATCTTCCAGATAGCTGTGCAGAATGTTAATTCAGCAAGAGAAAGCAGAATGAGCAAGTTTGAGCATGTTCCTCCAAGGTATCTATTTAGATATTCAAACTTGTGCATTTTTCCTCATTCTATCTAAATATTTACCATTATTCATTTGCCTATTGCGATGGTACGTTTCTCTGTTTGGCGCAACAGTAAAACTGGAGGTGCTTCGGTGGACCTCGTGAAGTTATTTGGTAATAAATCTCGATTCACTATTTTTTTTTTTTTTTGAAGTGATTAGTCTATTCCTTGAAGCTTATGGATTTTCCTTCCATTTCCATTCTCTTATCTAACCTAAGAAGTATATGGTATATAAATCGTACACGATTTTCTAGTACTGCTAGTTATGTTTGTTTTCTGGTATCGTGTGTCGTTGTCTTCAAGAGAGAGAAATCCAATGTTTATCAACATTGACCTAGAAGTTTAGGGTGTTTTTGATTCCTGAGAATCATTAGGGGCTCATGTGAATGACAACTTATCTCAAGTTCAAATAGATTCCCACATGCGTGAGATATCTAGACATGCTGAGATGTCTTCATATGCGGGTATCTCATTTCCACAACACTTGGTGGGGTTATGGGTGTCTATATTTTGCGCATAAACAAAAAGATATTGTTTGTTCTTTGTGCCCTTTTACCATTTTTCTAAGAGTATAGCATACTTTTAAATTTTATTTTATTTAGTTAGTAGTTTATGTTTTATTATTAACGTTCTGTCTGTTACAGATAAATATGAACTTTTTCGTTTTTTTTTTCAGAATCAGAGAGTTCATATCCCTATCTTAATGCCATTTACACTTCTTTATTCTCAAGTTTTAGCTTAAAATTAGTTTAAAGTACATGAATCACGTGACATGCACTTCATGCACTTAATTATTACCATGATCGAAGCATGTTTAATCCGAGCTTAGACCATTATTTTTTTCACCGTCTCAGTTTTTATACTATTTTCATTTGCCAGAGTTGGTGAGCTAAGTTTGGGAATGGGTTCTTTTTTTTTTTCAGTATAAATAACTAACTCCTATTATTAGTCTACTTCTAATATTCTTTCCAGCTGACTAAAATTATTAAAATTTGATGCTTACCGTAGTAGTATATGTTTGTTAGGATTCATGAACCTCCACAATGGTATAATATTGTTCACTTTGAGCATAAACTCTCATGACTTTGTTTTTTATTAGTTCGATGTAGAACTCATTTCCCAACGACCCTCAATACTATACACTAAAATGCAACGAGATAAGAAAGGATTGGAACATTTACGAACCAATTATTGATCTTTTATCAAACGAGAAAGCTAATGCCCTTGAATCAGAAAGAGAGAGGACTGCTTGGCAATATATTCTCAGTTGATCATATCACTTCTTATGGTCTAAGGTAAATTATCTGACACGGATGAAGTTAGGCAATTGTTCTTGCTGTTTCAACACATAATTAACATTCTTTAACTTTCCAAATTACAGGATTTCATAGCAATTCTTCATTGTAAGCCAATAAATCTAGCTGTTAAGTATGGTAATAAACTCTCTGATCTCTGATAATGACATGGGCAGAACTTCTGACATGAATTTGATTACCTAAAATTTTCAAAGGATGAATCTAGCTGAAAGACCGACTCATAAAGGATGAATTTGTTCCATTCAGCTGACAAGTGAAGAAAATTTTCAAATGCCAAAAGTTCTTTGATAGAATCATGGATGATATGGAGCAGTTCTTTGATAGAATCATGGATGATA

mRNA sequence

ATGCCTTCACCTGGGACTCTTCTGATCCAGATTCAGAGGGTGCTCTTTGCAAAGAGGACGGTGAAAGATTTAAAGCTTCCCCCGTTATTTATAACACAAATTGCACAATCCATTCAACTTGATCTCCGAGTGAACAATACCCTCATAAAAGATCAGTTTCTGTGGGACTTGAACAACTATGAGAGCGACCCTGAAGAGTTTTCCATGACATTCTGCAAAGATTTGGGTATTGAAGACCCTGAAGTAGGACCTGCAATTGCTTTTGTAATTAGAGAACAGCTCTATGAGATAGCTGTGCAGAATGTTAATTCAGCAAGAGAAAGCAGAATGAGCAAGTTTGAGCATGTTCCTCCAAGTAAAACTGGAGGTGCTTCGGTGGACCTCGTGAAGTTATTTGTTCGATGTAGAACTCATTTCCCAACGACCCTCAATACTATACACTAAAATGCAACGAGATAAGAAAGGATTGGAACATTTACGAACCAATTATTGATCTTTTATCAAACGAGAAAGCTAATGCCCTTGAATCAGAAAGAGAGAGGACTGCTTGGCAATATATTCTCAGTTGATCATATCACTTCTTATGGTCTAAGGATTTCATAGCAATTCTTCATTGTAAGCCAATAAATCTAGCTGTTAAGTATGGATGAATCTAGCTGAAAGACCGACTCATAAAGGATGAATTTGTTCCATTCAGCTGACAAGTGAAGAAAATTTTCAAATGCCAAAAGTTCTTTGATAGAATCATGGATGATATGGAGCAGTTCTTTGATAGAATCATGGATGATA

Coding sequence (CDS)

ATGCCTTCACCTGGGACTCTTCTGATCCAGATTCAGAGGGTGCTCTTTGCAAAGAGGACGGTGAAAGATTTAAAGCTTCCCCCGTTATTTATAACACAAATTGCACAATCCATTCAACTTGATCTCCGAGTGAACAATACCCTCATAAAAGATCAGTTTCTGTGGGACTTGAACAACTATGAGAGCGACCCTGAAGAGTTTTCCATGACATTCTGCAAAGATTTGGGTATTGAAGACCCTGAAGTAGGACCTGCAATTGCTTTTGTAATTAGAGAACAGCTCTATGAGATAGCTGTGCAGAATGTTAATTCAGCAAGAGAAAGCAGAATGAGCAAGTTTGAGCATGTTCCTCCAAGTAAAACTGGAGGTGCTTCGGTGGACCTCGTGAAGTTATTTGTTCGATGTAGAACTCATTTCCCAACGACCCTCAATACTATACACTAA

Protein sequence

MPSPGTLLIQIQRVLFAKRTVKDLKLPPLFITQIAQSIQLDLRVNNTLIKDQFLWDLNNYESDPEEFSMTFCKDLGIEDPEVGPAIAFVIREQLYEIAVQNVNSARESRMSKFEHVPPSKTGGASVDLVKLFVRCRTHFPTTLNTIH

Homology

[Close]

BLAST of CmaCh14G015520 vs. Swiss-Prot
Match: BSH_ARATH (Chromatin structure-remodeling complex protein BSH OS=Arabidopsis thaliana GN=BSH PE=1 SV=2)

HSP 1 Score: 171.4 bits (433), Expect = 7.3e-42
Identity = 93/148 (62.84%), Postives = 106/148 (71.62%), Query Frame = 1


Query: 14  VLFAKRTVKDLKLPPLFITQIAQSIQ------------------------LDLRVNNTLI 73
           V+FAKRTVKDLKLP  F+TQIAQSIQ                        LDLRVN+TLI
Sbjct: 53  VIFAKRTVKDLKLPYAFVTQIAQSIQSQLSDFRAYEGQDMYTGEKIIPIKLDLRVNHTLI 112

Query: 74  KDQFLWDLNNYESDPEEFSMTFCKDLGIEDPEVGPAIAFVIREQLYEIAVQNVNSARESR 133
           KDQFLWDLNN+ESDPEEF+ T CKDLG+EDPEVGPA+AF IREQLYEIA+Q+V SARESR
Sbjct: 113 KDQFLWDLNNFESDPEEFARTLCKDLGVEDPEVGPAVAFAIREQLYEIAIQSVASARESR 172

[Close]

BLAST of CmaCh14G015520 vs. Swiss-Prot
Match: SFH1_YEAST (Chromatin structure-remodeling complex subunit SFH1 OS=Saccharomyces cerevisiae (strain ATCC 204508 / S288c) GN=SFH1 PE=1 SV=1)

HSP 1 Score: 51.6 bits (122), Expect = 8.5e-06
Identity = 25/60 (41.67%), Postives = 36/60 (60.00%), Query Frame = 1


Query: 38  IQLDLRVNNTLIKDQFLWDLNNYESDPEEFSMTFCKDLGIEDPEVGPAIAFVIREQLYEI 97
           I LD+      IKDQFLW+ N+    PEEF+  +CKDL +    +   IA +I+EQL ++
Sbjct: 206 ITLDIEHMGHTIKDQFLWNYNDDSISPEEFASIYCKDLDMTSATLQTQIANIIKEQLKDL 265

[Close]

BLAST of CmaCh14G015520 vs. TrEMBL
Match: A0A0A0L868_CUCSA (Uncharacterized protein OS=Cucumis sativus GN=Csa_3G171220 PE=4 SV=1)

HSP 1 Score: 198.4 bits (503), Expect = 6.2e-48
Identity = 110/148 (74.32%), Postives = 112/148 (75.68%), Query Frame = 1


Query: 14  VLFAKRTVKDLKLPPLFITQIAQSIQ------------------------LDLRVNNTLI 73
           V+FAKRTVKDLKLPP FITQIAQSIQ                        LDLRVNNTLI
Sbjct: 53  VVFAKRTVKDLKLPPAFITQIAQSIQSQLTEFRSFEGQDMYTGEKIIPIKLDLRVNNTLI 112

Query: 74  KDQFLWDLNNYESDPEEFSMTFCKDLGIEDPEVGPAIAFVIREQLYEIAVQNVNSARESR 133
           KDQFLWDLNNYESDPEEFS T CKDLGI+DPEVGPAIA  IREQLYEIAVQNV SARESR
Sbjct: 113 KDQFLWDLNNYESDPEEFSRTLCKDLGIDDPEVGPAIAVAIREQLYEIAVQNVASARESR 172

[Close]

BLAST of CmaCh14G015520 vs. TrEMBL
Match: A0A169WUY0_DAUCA (Uncharacterized protein OS=Daucus carota subsp. sativus GN=DCAR_002560 PE=4 SV=1)

HSP 1 Score: 184.1 bits (466), Expect = 1.2e-43
Identity = 97/148 (65.54%), Postives = 111/148 (75.00%), Query Frame = 1


Query: 14  VLFAKRTVKDLKLPPLFITQIAQSIQ------------------------LDLRVNNTLI 73
           V+FAKRTV+DLKLPP F+TQIAQSIQ                        +DLRVN+TLI
Sbjct: 54  VVFAKRTVRDLKLPPAFVTQIAQSIQSQLGDFRSYEGQDMYTGEKIIPIKVDLRVNHTLI 113

Query: 74  KDQFLWDLNNYESDPEEFSMTFCKDLGIEDPEVGPAIAFVIREQLYEIAVQNVNSARESR 133
           KDQFLWDLNN+ESDPEEF+ TFCKDLGI+DPEVGPAIAF IREQLYEIA+QNV+SARESR
Sbjct: 114 KDQFLWDLNNFESDPEEFARTFCKDLGIDDPEVGPAIAFAIREQLYEIAIQNVSSARESR 173

[Close]

BLAST of CmaCh14G015520 vs. TrEMBL
Match: A0A068UT17_COFCA (Uncharacterized protein OS=Coffea canephora GN=GSCOC_T00033899001 PE=4 SV=1)

HSP 1 Score: 183.3 bits (464), Expect = 2.1e-43
Identity = 100/148 (67.57%), Postives = 109/148 (73.65%), Query Frame = 1


Query: 14  VLFAKRTVKDLKLPPLFITQIAQSIQ------------------------LDLRVNNTLI 73
           V+FAKRTVKDLKLPP FITQIAQSIQ                        LDLRVN+TLI
Sbjct: 54  VVFAKRTVKDLKLPPAFITQIAQSIQSQLTEFRSYEGQDMYTGERVVPIKLDLRVNHTLI 113

Query: 74  KDQFLWDLNNYESDPEEFSMTFCKDLGIEDPEVGPAIAFVIREQLYEIAVQNVNSARESR 133
           KDQFLWDLNN+ESDPEEF+ TFCKD+GIEDPEVGPAIA  IREQLYEIAVQ+V SA+ESR
Sbjct: 114 KDQFLWDLNNFESDPEEFARTFCKDMGIEDPEVGPAIAIAIREQLYEIAVQSVASAKESR 173

[Close]

BLAST of CmaCh14G015520 vs. TrEMBL
Match: A0A097PLV7_VITVI (Bushy growth protein (Fragment) OS=Vitis vinifera PE=2 SV=1)

HSP 1 Score: 180.3 bits (456), Expect = 1.8e-42
Identity = 96/148 (64.86%), Postives = 109/148 (73.65%), Query Frame = 1


Query: 14  VLFAKRTVKDLKLPPLFITQIAQSIQ------------------------LDLRVNNTLI 73
           V+FAKRTVKDLKLPP FITQIAQSIQ                        LDLRVN+TLI
Sbjct: 40  VVFAKRTVKDLKLPPAFITQIAQSIQSQLAEFRSFEGQDMQTGEKIVPIKLDLRVNHTLI 99

Query: 74  KDQFLWDLNNYESDPEEFSMTFCKDLGIEDPEVGPAIAFVIREQLYEIAVQNVNSARESR 133
           KDQFLWDLNN+ESDPEEF+ TFCKDLG+EDPEVGPAIA  IREQLYEIA+Q+V SARE+R
Sbjct: 100 KDQFLWDLNNFESDPEEFARTFCKDLGVEDPEVGPAIAVAIREQLYEIAIQSVTSARETR 159

[Close]

BLAST of CmaCh14G015520 vs. TrEMBL
Match: D7T6B3_VITVI (Putative uncharacterized protein OS=Vitis vinifera GN=VIT_05s0020g01060 PE=4 SV=1)

HSP 1 Score: 180.3 bits (456), Expect = 1.8e-42
Identity = 96/148 (64.86%), Postives = 109/148 (73.65%), Query Frame = 1


Query: 14  VLFAKRTVKDLKLPPLFITQIAQSIQ------------------------LDLRVNNTLI 73
           V+FAKRTVKDLKLPP FITQIAQSIQ                        LDLRVN+TLI
Sbjct: 53  VVFAKRTVKDLKLPPAFITQIAQSIQSQLAEFRSFEGQDMQTGEKIVPIKLDLRVNHTLI 112

Query: 74  KDQFLWDLNNYESDPEEFSMTFCKDLGIEDPEVGPAIAFVIREQLYEIAVQNVNSARESR 133
           KDQFLWDLNN+ESDPEEF+ TFCKDLG+EDPEVGPAIA  IREQLYEIA+Q+V SARE+R
Sbjct: 113 KDQFLWDLNNFESDPEEFARTFCKDLGVEDPEVGPAIAVAIREQLYEIAIQSVTSARETR 172

[Close]

BLAST of CmaCh14G015520 vs. TAIR10
Match: AT3G17590.2 (AT3G17590.2 transcription regulatory protein SNF5, putative (BSH))

HSP 1 Score: 171.4 bits (433), Expect = 4.1e-43
Identity = 93/148 (62.84%), Postives = 106/148 (71.62%), Query Frame = 1


Query: 14  VLFAKRTVKDLKLPPLFITQIAQSIQ------------------------LDLRVNNTLI 73
           V+FAKRTVKDLKLP  F+TQIAQSIQ                        LDLRVN+TLI
Sbjct: 55  VIFAKRTVKDLKLPYAFVTQIAQSIQSQLSDFRAYEGQDMYTGEKIIPIKLDLRVNHTLI 114

Query: 74  KDQFLWDLNNYESDPEEFSMTFCKDLGIEDPEVGPAIAFVIREQLYEIAVQNVNSARESR 133
           KDQFLWDLNN+ESDPEEF+ T CKDLG+EDPEVGPA+AF IREQLYEIA+Q+V SARESR
Sbjct: 115 KDQFLWDLNNFESDPEEFARTLCKDLGVEDPEVGPAVAFAIREQLYEIAIQSVASARESR 174

[Close]

BLAST of CmaCh14G015520 vs. NCBI nr
Match: gi|449459804|ref|XP_004147636.1| (PREDICTED: chromatin structure-remodeling complex protein BSH isoform X1 [Cucumis sativus])

HSP 1 Score: 198.4 bits (503), Expect = 9.0e-48
Identity = 110/148 (74.32%), Postives = 112/148 (75.68%), Query Frame = 1


Query: 14  VLFAKRTVKDLKLPPLFITQIAQSIQ------------------------LDLRVNNTLI 73
           V+FAKRTVKDLKLPP FITQIAQSIQ                        LDLRVNNTLI
Sbjct: 53  VVFAKRTVKDLKLPPAFITQIAQSIQSQLTEFRSFEGQDMYTGEKIIPIKLDLRVNNTLI 112

Query: 74  KDQFLWDLNNYESDPEEFSMTFCKDLGIEDPEVGPAIAFVIREQLYEIAVQNVNSARESR 133
           KDQFLWDLNNYESDPEEFS T CKDLGI+DPEVGPAIA  IREQLYEIAVQNV SARESR
Sbjct: 113 KDQFLWDLNNYESDPEEFSRTLCKDLGIDDPEVGPAIAVAIREQLYEIAVQNVASARESR 172

[Close]

BLAST of CmaCh14G015520 vs. NCBI nr
Match: gi|659077056|ref|XP_008439008.1| (PREDICTED: chromatin structure-remodeling complex protein BSH isoform X1 [Cucumis melo])

HSP 1 Score: 197.6 bits (501), Expect = 1.5e-47
Identity = 109/148 (73.65%), Postives = 112/148 (75.68%), Query Frame = 1


Query: 14  VLFAKRTVKDLKLPPLFITQIAQSIQ------------------------LDLRVNNTLI 73
           V+FAKRTVKDLKLPP FITQIAQSIQ                        LDLRVNNT+I
Sbjct: 53  VVFAKRTVKDLKLPPAFITQIAQSIQSQLTEFRSFEGQDMYTGEKIIPIKLDLRVNNTII 112

Query: 74  KDQFLWDLNNYESDPEEFSMTFCKDLGIEDPEVGPAIAFVIREQLYEIAVQNVNSARESR 133
           KDQFLWDLNNYESDPEEFS T CKDLGI+DPEVGPAIA  IREQLYEIAVQNV SARESR
Sbjct: 113 KDQFLWDLNNYESDPEEFSRTLCKDLGIDDPEVGPAIAVAIREQLYEIAVQNVASARESR 172

[Close]

BLAST of CmaCh14G015520 vs. NCBI nr
Match: gi|1021052126|gb|KZN09904.1| (hypothetical protein DCAR_002560 [Daucus carota subsp. sativus])

HSP 1 Score: 184.1 bits (466), Expect = 1.7e-43
Identity = 97/148 (65.54%), Postives = 111/148 (75.00%), Query Frame = 1


Query: 14  VLFAKRTVKDLKLPPLFITQIAQSIQ------------------------LDLRVNNTLI 73
           V+FAKRTV+DLKLPP F+TQIAQSIQ                        +DLRVN+TLI
Sbjct: 54  VVFAKRTVRDLKLPPAFVTQIAQSIQSQLGDFRSYEGQDMYTGEKIIPIKVDLRVNHTLI 113

Query: 74  KDQFLWDLNNYESDPEEFSMTFCKDLGIEDPEVGPAIAFVIREQLYEIAVQNVNSARESR 133
           KDQFLWDLNN+ESDPEEF+ TFCKDLGI+DPEVGPAIAF IREQLYEIA+QNV+SARESR
Sbjct: 114 KDQFLWDLNNFESDPEEFARTFCKDLGIDDPEVGPAIAFAIREQLYEIAIQNVSSARESR 173

[Close]

BLAST of CmaCh14G015520 vs. NCBI nr
Match: gi|661884808|emb|CDP11571.1| (unnamed protein product [Coffea canephora])

HSP 1 Score: 183.3 bits (464), Expect = 3.0e-43
Identity = 100/148 (67.57%), Postives = 109/148 (73.65%), Query Frame = 1


Query: 14  VLFAKRTVKDLKLPPLFITQIAQSIQ------------------------LDLRVNNTLI 73
           V+FAKRTVKDLKLPP FITQIAQSIQ                        LDLRVN+TLI
Sbjct: 54  VVFAKRTVKDLKLPPAFITQIAQSIQSQLTEFRSYEGQDMYTGERVVPIKLDLRVNHTLI 113

Query: 74  KDQFLWDLNNYESDPEEFSMTFCKDLGIEDPEVGPAIAFVIREQLYEIAVQNVNSARESR 133
           KDQFLWDLNN+ESDPEEF+ TFCKD+GIEDPEVGPAIA  IREQLYEIAVQ+V SA+ESR
Sbjct: 114 KDQFLWDLNNFESDPEEFARTFCKDMGIEDPEVGPAIAIAIREQLYEIAVQSVASAKESR 173

[Close]

BLAST of CmaCh14G015520 vs. NCBI nr
Match: gi|225432226|ref|XP_002270283.1| (PREDICTED: chromatin structure-remodeling complex protein BSH [Vitis vinifera])

HSP 1 Score: 180.3 bits (456), Expect = 2.5e-42
Identity = 96/148 (64.86%), Postives = 109/148 (73.65%), Query Frame = 1


Query: 14  VLFAKRTVKDLKLPPLFITQIAQSIQ------------------------LDLRVNNTLI 73
           V+FAKRTVKDLKLPP FITQIAQSIQ                        LDLRVN+TLI
Sbjct: 53  VVFAKRTVKDLKLPPAFITQIAQSIQSQLAEFRSFEGQDMQTGEKIVPIKLDLRVNHTLI 112

Query: 74  KDQFLWDLNNYESDPEEFSMTFCKDLGIEDPEVGPAIAFVIREQLYEIAVQNVNSARESR 133
           KDQFLWDLNN+ESDPEEF+ TFCKDLG+EDPEVGPAIA  IREQLYEIA+Q+V SARE+R
Sbjct: 113 KDQFLWDLNNFESDPEEFARTFCKDLGVEDPEVGPAIAVAIREQLYEIAIQSVTSARETR 172

The following BLAST results are available for this feature:

BLAST of CmaCh14G015520 vs. Swiss-Prot


Match Name	E-value	Identity	Description
BSH_ARATH	7.3e-42	62.84	Chromatin structure-remodeling complex protein BSH OS=Arabidopsis thaliana GN=BS...	[more]
SFH1_YEAST	8.5e-06	41.67	Chromatin structure-remodeling complex subunit SFH1 OS=Saccharomyces cerevisiae ...	[more]

BLAST of CmaCh14G015520 vs. TrEMBL


Match Name	E-value	Identity	Description
A0A0A0L868_CUCSA	6.2e-48	74.32	Uncharacterized protein OS=Cucumis sativus GN=Csa_3G171220 PE=4 SV=1	[more]
A0A169WUY0_DAUCA	1.2e-43	65.54	Uncharacterized protein OS=Daucus carota subsp. sativus GN=DCAR_002560 PE=4 SV=1	[more]
A0A068UT17_COFCA	2.1e-43	67.57	Uncharacterized protein OS=Coffea canephora GN=GSCOC_T00033899001 PE=4 SV=1	[more]
A0A097PLV7_VITVI	1.8e-42	64.86	Bushy growth protein (Fragment) OS=Vitis vinifera PE=2 SV=1	[more]
D7T6B3_VITVI	1.8e-42	64.86	Putative uncharacterized protein OS=Vitis vinifera GN=VIT_05s0020g01060 PE=4 SV=...	[more]

BLAST of CmaCh14G015520 vs. TAIR10


Match Name	E-value	Identity	Description
AT3G17590.2	4.1e-43	62.84	transcription regulatory protein SNF5, putative (BSH)	[more]

BLAST of CmaCh14G015520 vs. NCBI nr


Match Name	E-value	Identity	Description
gi\|449459804\|ref\|XP_004147636.1\|	9.0e-48	74.32	PREDICTED: chromatin structure-remodeling complex protein BSH isoform X1 [Cucumi...	[more]
gi\|659077056\|ref\|XP_008439008.1\|	1.5e-47	73.65	PREDICTED: chromatin structure-remodeling complex protein BSH isoform X1 [Cucumi...	[more]
gi\|1021052126\|gb\|KZN09904.1\|	1.7e-43	65.54	hypothetical protein DCAR_002560 [Daucus carota subsp. sativus]	[more]
gi\|661884808\|emb\|CDP11571.1\|	3.0e-43	67.57	unnamed protein product [Coffea canephora]	[more]
gi\|225432226\|ref\|XP_002270283.1\|	2.5e-42	64.86	PREDICTED: chromatin structure-remodeling complex protein BSH [Vitis vinifera]	[more]

Annotated Terms

The following terms have been associated with this gene:

Vocabulary: **INTERPRO**
Term	Definition
IPR006939	SNF5

Vocabulary: **Cellular Component**
Term	Definition
GO:0000228	nuclear chromosome

Vocabulary: **Biological Process**
Term	Definition
GO:0006338	chromatin remodeling

GO Annotation

GO Assignments

This gene is annotated with the following GO terms.

Category	Term Accession	Term Name
biological_process	GO:0006338	chromatin remodeling
biological_process	GO:0043044	ATP-dependent chromatin remodeling
biological_process	GO:0006281	DNA repair
biological_process	GO:0006337	nucleosome disassembly
biological_process	GO:0006357	regulation of transcription from RNA polymerase II promoter
cellular_component	GO:0000228	nuclear chromosome
molecular_function	GO:0003674	molecular_function

Relationships

The following mRNA feature(s) are a part of this gene:


Feature Name	Unique Name	Type
CmaCh14G015520.1	CmaCh14G015520.1	mRNA

InterPro

Analysis Name: InterPro Annotations of Cucurbita maxima
Date Performed: 2017-05-20


IPR Term	IPR Description	Source	Source Term	Source Description	Alignment
IPR006939	SNF5/SMARCB1/INI1	PANTHER	PTHR10019	SNF5	coord: 14..132 score: 6.9
IPR006939	SNF5/SMARCB1/INI1	PFAM	PF04855	SNF5	coord: 38..96 score: 2.3

Synteny

The following gene(s) are orthologous to this gene:


Gene	Orthologue	Organism	Block
CmaCh14G015520	Cucsa.252100	Cucumber (Gy14) v1	cgycmaB0709
CmaCh14G015520	Cla021836	Watermelon (97103) v1	cmawmB242
CmaCh14G015520	Csa3G171220	Cucumber (Chinese Long) v2	cmacuB253
CmaCh14G015520	MELO3C006760	Melon (DHL92) v3.5.1	cmameB242
CmaCh14G015520	ClCG05G006940	Watermelon (Charleston Gray)	cmawcgB233
CmaCh14G015520	CSPI03G15440	Wild cucumber (PI 183967)	cmacpiB255
CmaCh14G015520	CmoCh06G015880	Cucurbita moschata (Rifu)	cmacmoB271
CmaCh14G015520	CmoCh14G015880	Cucurbita moschata (Rifu)	cmacmoB245
CmaCh14G015520	Lsi05G013780	Bottle gourd (USVL1VR-Ls)	cmalsiB246
CmaCh14G015520	Cp4.1LG03g12080	Cucurbita pepo (Zucchini)	cmacpeB283
CmaCh14G015520	Cp4.1LG08g05440	Cucurbita pepo (Zucchini)	cmacpeB292
CmaCh14G015520	MELO3C006760.2	Melon (DHL92) v3.6.1	cmamedB273
CmaCh14G015520	CsaV3_3G015610	Cucumber (Chinese Long) v3	cmacucB0291
CmaCh14G015520	Cla97C05G088590	Watermelon (97103) v2	cmawmbB263
CmaCh14G015520	Bhi01G000832	Wax gourd	cmawgoB0328
CmaCh14G015520	CsGy3G015510	Cucumber (Gy14) v2	cgybcmaB318
CmaCh14G015520	Carg25662	Silver-seed gourd	carcmaB1035
CmaCh14G015520	Carg19590	Silver-seed gourd	carcmaB0391

The following gene(s) are paralogous to this gene:


Gene	Paralogue	Organism	Block
CmaCh14G015520	CmaCh06G015930	Cucurbita maxima (Rimu)	cmacmaB284

The following block(s) are covering this gene:

None