Carg19590 (gene) Silver-seed gourd | Cucurbit Genomics Database (CuGenDB)

Overview


Name	Carg19590
Type	gene
Organism	Cucurbita argyrosperma (Silver-seed gourd)
Description	SWI/SNF-related, matrix-associated, actin-dependent regulator of chromatin subfamily B member 1
Location	Cucurbita_argyrosperma_scaffold_117 : 40047 .. 45250 (-)

Genome Viewer

Gene Expression

Sequences

The following sequences are available for this feature:

Gene sequence (with intron)

Legend: exonfive_prime_UTRpolypeptideCDSthree_prime_UTR

Hold the cursor over a type above to highlight its positions in the sequence below.

GAGAACGATCCAAACTCAGAGAAGCGCACTGCAATCCTTCTGAAAGCTACAGAATTGAACTCCCGAAGTAACCATGGAAGCTTTGGCCTCAGCTCACTCAAAAGCTCCTTTCAAGTTCAGGATGTGAGTTTTTTCTCGCTTTCATCTCCACTATTGTTCTTTTCATTGATTTCTCTTTCTCATGGTTTTATATTTCTTATGTTTTCGATCATTATCGAAGTCCGACGGCGGAGTATCTAATACCAATTCGTTTGGACATTGAAATCGACGGTCAGAGGTTCAAAGATGCCTTCACCTGGAACTCTTCTGGTAATTTTCATTGCTTACCTTGGTTGTGCCTGTTATGTTTCCTTTTAAATCAGTGATGATTCATGTGTAGGTTAGTTTCAGCTCTTGACTGCTCGAATTTAGGTTTTATTTTTTTCTCCCTAAATTTAGGATTTCTGAGTTGTAAAACTGAATTAATCACTGTTTTACCGATGATTTTGGCCGCCGTATTGCTGATACTTTAATGAAGGACTTGTAAACTTCGTTTGGTTTAAATATCTGACTTAATGTCTTCCATTGTGACTGTGTTTTGGTTTAGTATTTAGGCCCGAAATCAGTGTTTTGAAAGTTCATAGTATGGCGAACTAAAGCACAGTAGACATTGAGAACGTAAGTGTTCTTGCCACATCGACTAATTTAGAGAATGATCACGGATTTATAATCAAGAAATACAATCTCCATTGGTGTGAGGCCTAAGCCCAAAGCAAAGATAGTAGAGCTTATGCTCAAAGTGGACAATATCATACCATTGTGGAGAGTCGTGTTCATCTAACATGGTATCAGAGTCATGCCCTAAACTTAGCTATGTCAATAGAATCCTCAAATGTCGACAAAGGCCTCCAAAAGAAAAGGAGTCGAGGCTCCTCGAAGGCATAATAAAAAATGACTAAGACTCCAAAAGAAAATAGAGTCGAGCCTCGATTAAGGGGAGACGTACTTTGTTCGAGGGGAGGTGTTGGATGAAAGTCTCACATTGGCTAATTTAGGGAATGATCATGGGTTTATAATCAAGGAATACTATCTCCATTGGTGTGAGGCCTTTTGGGGAAGCCCAGAGCAAAGCCATGAGAGCTTATGCTCAAAGTGGGACAATATCATACTACTGTGGAGAGTCGTGTTCATCTAACAAGTGTAAGGCATTTTGTGTTAAATAGGTCTATAGTGTTCATCTCAATTTTATGTGTCTAATGATGCTTTAAACTTTCAATTTTGTATACAATAGCTCTTTGAATTTTAAATAATGTCAAATATTTCAAGGACGTATTAGACACAAAATTAAAAAGTTCAAGGACTTGTTAAATATTAATTTGAAAGTTTAGAGACTTATTAGAGACTCAAGGACCTCTAATTAAAAAAAAGTTGAAAGTTCCTCTAATTAAAAAAAAAAAATTAAAAGTTCCTCTAATTAAAAAAGAGTTGAAAGTTCAAGTAATAAACTTGTAGTTTAACTTAAAACTTATACAAATGAAAAGTAGTATTATGGACAATAAGGCATTGAAAAAGTTGAGAAATTAGAGCCTTTGTAAGAGATGGGGGACAAAAATAATCATTTTCTTTAAAAATCTTTGTTAGTTTCTCCCATATGATGCTGTAATTTTGTCATTTGGAAAAGGAGGTTGAAAGAACTTTCTCATAGAGTTTAATCATTCTCAGGCTTTATGAGAGACTTTAAATTATATGAATGGCTTGTTATGCACTTTGTTAGCTTTGAGAGACAACATGAGTTTTTAACTTGGGAGCTTGAATCTAGTAACTCAGAGGCTATCTTAAAACGTTCCAAAACCACTGGCACCTACCATTGAGGGTTTACTTGAAAATGCCTTTTTTGCTCTTCTGATAATATCTTCAGTAACGTCATGATATTTGATGTTTACTCTAGATCCAGATTCAGAGGGTGCTCTTTGCAAAGAGGACGGTGAAAGATTTAAAGCTTCCCCCGTTATTTATAACACAAATTGCACAATCCATTCAAGTAAGGATAATAGTCATCCGCGTCTCTCTCTCCCATTCTTCAAGGATTTGAATGGTCAGCCTAAACCATGTCTCCTTTAGATATTAACAACAAAACCTTATAACTTAGATCATTACTTAAAATGAAATCTTGACTTGCCATCAAATTTATCATGTTTTCTCTTGGGTTTTGCTTATCAGTTGCAACTTACAGAATTTCAATCCTTTGAAGGTCAAGATATGTATAGTGGTGAAACGGTCATTTCAATCAAGGTTTGTCTAGTTTGCGTTAACAATGCCAATCTCTTGACAACTATCTCCCTTTGTCATTATTCTACAGCTTGATGCCAAATAATGCAATTTTATTTCTTTCCCAGCTTGATCTCCGAGTGAACAATACCCTCATAAAAGATCAGTCTCTGTGGGTAAAGTTGAGCATACTCTTGATACATTTGACTGGAACAAATACTTATTCAGCTTACTTGTGCAAAATGATATATTTTTTAGGACTTGAACAACTATGAGAGCGACCCTGAAGAGTTTTCCATGACATTCTGCAAAGATTTGGGTATTGAAGACCCTGAAGTAGGAGTGAGTAAAGATCAATTGAATATGTAACTATAATGCACAAAGTTAGAACTGTATGTTCCATGTAAATTGGTTCCTTCGGTTGTGAAAAGGCAGCATCCCATGTTAAAGGGATGGATTATCAATGAGATATTTTTCGCCTAAATTGTCATCCTGTACATGTTTTTCTCCAACTATTTGATACTAAGAGAATTTCATTTATTTTTGTGAGGTAGCCTGCAATTGCTTTTGTAATTAGAGAACAGCTCTATGAGGTTATTTTTTTCTTGCCTGTTAAAGCCTCCTCCTCAAAACTATTTCTTTTTTTCTAATTCTCTTCACATTCTGAGTGATTTATTTCATCACTGCATCTTCATGTGTCTATCTTCCAGATAGCTGTGCAGAATGTTAATTCATCAAGAGAAAGCAGAATGAGCAAGTTTGAGCATGTTCCTGCAAGGTATCTATTTAGATATTCAAACTTGTGCATTTTTCCTCATTCTATCTAAATATTTACCATCATTCATTTGCCTATTGCGATGGTACGTTTCTCTGTTTGGCGCAACAGTAAAACTGGAGGTGCTTCGGTGGACCTCGTGAAGTTATTTGGTAATAAATCTCGATTCACTATTTTTTTTTTTTTTTTTCTTTGAAGTGATTAGTCTATTCCTTGATGCTTATGGATTTTCCTTCCATTTCCATTCTCTTATCTAACCTAAGAAGTATATGGTAAATAAATCGTACACGATTATCTAATACTGCTAGTTATGTTTGTTTTCTGGTATCGTGTGTCGTTGTCTTCAAGAGAGAGAAATCCAATGTTTTTCAACATTGACCTAGAAGTTTTGGGTGTTTTTGATTCCTGGGAATCATTAGGGGCTCATGTGAATGACAACTTATCTCAAGTTTAAATAGATTCCCACATGCGTGAGATATCCAGACATGCTGAGATGTCTTCATATTCGGGTATCTCATTTCCACAACACTTGGTGGGGTTATGGGTGTCTATATTTTGCGCATAAACAAAAAGATATTGTTTGTTCTTTGTGCCCTTTAACCATTTTTCTAAGCGTATAGCATACTTTTAAATTTTATTTTTTTTAGTTAGTAGTTTATGTTTATTATTAACGTTCTGTCTGTTACAGATAAATATGAACTTTTTTTTTTCAGAATCAGAGAGTTCATATCCCTATCTTAATGCCATTTACACTTCTTTATTCTCAAGTTTTAGCTTAAAAATTAGTTTAAAGTTCATGAATCACGTGACATGCACTTCATGCACTTAATTATTACCATGATGGAAGCATGTTTAATCCGAGCTTAGACCATTATTCTTTTCACCGTCTCAGTTTTTATACCATTTTCATTTGCCAGAGTTGGTGAGCTAAGTTTGGGAACGGATTCCCTTTTTTTTTTTTTTTTTTTTTTTTTTAAGTATAAAAAACTAACTCCTATTATTAGTCTACTAATATTCTTTCCAGCTGATTTGTAAAAGTATTAAAATTTGATGCTTATGGTAGTAGTATAGGTTAGGAAACACAAACTTTCACATGATATGATATTGTTCACTTTGAACATAAACTCTCATGACTTTGCTTTTGGTTACCCATAAGGTCTCTTGCCAATGGAGATGTATTTCTTACTTATAAACTCATGATTAACCCTTTAATTAGCCTAATATGGGACTCATTTCTCAACGATCCTCAACACTATACACTAAAATGCAACAGGATAAGAAAGGATTGGGACAATTACCAACCAATTATTGATCTTTTGTCAAACGAGAAAGTTAATGCCCTTGAATCAGAAAGAGAGAGGACTGCTCGGCAATATATTCTCAGTTGTTGATCATATCACTTCTATGGTCTAAGGTAAACTATCTGACACGGATGAAGTTGTTAGGCAATTGTTCTTGCTGTTTTAACACATAATTAACATCCTTTAACTTTCCAAGTTACAGGATTTCGTAGCAATTCTTCATTGTAAGCCTATAAATCTAGCTGTTTAGTATGGTTATAAACTCTCTGAGCTCTGATAATGACATGGGTAGCACTTCTGACATGAATTTCATTCTTACTTTTTTTTGTTTTTGATAGCATACTCAGAACCATTCCAAAAGTTACTGAAAGACCGACTCATAAAGGATGAATTTGTTCCATTCAGCTGACAAGTGAAGAAAATTTTCAAAAGCCAAAAGTTCTTTGATAGAATCATGGATGATATGGAGCAGTTCTTTGAGCAGTTCTTCGATGGAATCATGGATGATAAGAGACTGATATGTCACCAACTAAAAGTTGGGGAATAATTTGCTCAATTTACTTCATGAAACCAATCATGTGCCCAAATTGAATTCGATTGGACGATATGGATAACATTGTGAAAAATGCAAATGGAAGGATAGAGCTCTGAAAAAGGCCTTCACGAGAAGCCCATCCAAATCCCTATCTTCCTTCCTCACATATCTATGAAAATGATAGAAAGAGATATTTTGTACGGACTGAAATAGACCTCAATAGTGGTGTGGCAGTTGAATTTTGTGGCTCAAAATTCGAGTTGGATGAGATATTTTTCTTAACTGAAACAAAAGTAACCATAGTTTAATTCAAAATTACACCAAATATCTTTATAATTCCAAAATA

mRNA sequence

GAGAACGATCCAAACTCAGAGAAGCGCACTGCAATCCTTCTGAAAGCTACAGAATTGAACTCCCGAAGTAACCATGGAAGCTTTGGCCTCAGCTCACTCAAAAGCTCCTTTCAAGTTCAGGATTCCGACGGCGGAGTATCTAATACCAATTCGTTTGGACATTGAAATCGACGGTCAGAGGTTCAAAGATGCCTTCACCTGGAACTCTTCTGATTCAGAGGGTGCTCTTTGCAAAGAGGACGGTGAAAGATTTAAAGCTTCCCCCTTGCAACTTACAGAATTTCAATCCTTTGAAGGTCAAGATATGTATAGTGGTGAAACGGTCATTTCAATCAAGCTTGATCTCCGAGTGAACAATACCCTCATAAAAGATCAGTCTCTGTGGGACTTGAACAACTATGAGAGCGACCCTGAAGAGTTTTCCATGACATTCTGCAAAGATTTGGGTATTGAAGACCCTGAACCTGCAATTGCTTTTGTAATTAGAGAACAGCTCTATGAGATAGCTGTGCAGAATGTTAATTCATCAAGAGAAAGCAGAATGAGCAAGTTTGAGCATGTTCCTGCAAGCATACTCAGAACCATTCCAAAAGTTACTGAAAGACCGACTCATAAAGGATGAATTTGTTCCATTCAGCTGACAAGTGAAGAAAATTTTCAAAAGCCAAAAGTTCTTTGATAGAATCATGGATGATATGGAGCAGTTCTTTGAGCAGTTCTTCGATGGAATCATGGATGATAAGAGACTGATATGTCACCAACTAAAAGTTGGGGAATAATTTGCTCAATTTACTTCATGAAACCAATCATGTGCCCAAATTGAATTCGATTGGACGATATGGATAACATTGTGAAAAATGCAAATGGAAGGATAGAGCTCTGAAAAAGGCCTTCACGAGAAGCCCATCCAAATCCCTATCTTCCTTCCTCACATATCTATGAAAATGATAGAAAGAGATATTTTGTACGGACTGAAATAGACCTCAATAGTGGTGTGGCAGTTGAATTTTGTGGCTCAAAATTCGAGTTGGATGAGATATTTTTCTTAACTGAAACAAAAGTAACCATAGTTTAATTCAAAATTACACCAAATATCTTTATAATTCCAAAATA

Coding sequence (CDS)

ATGGAAGCTTTGGCCTCAGCTCACTCAAAAGCTCCTTTCAAGTTCAGGATTCCGACGGCGGAGTATCTAATACCAATTCGTTTGGACATTGAAATCGACGGTCAGAGGTTCAAAGATGCCTTCACCTGGAACTCTTCTGATTCAGAGGGTGCTCTTTGCAAAGAGGACGGTGAAAGATTTAAAGCTTCCCCCTTGCAACTTACAGAATTTCAATCCTTTGAAGGTCAAGATATGTATAGTGGTGAAACGGTCATTTCAATCAAGCTTGATCTCCGAGTGAACAATACCCTCATAAAAGATCAGTCTCTGTGGGACTTGAACAACTATGAGAGCGACCCTGAAGAGTTTTCCATGACATTCTGCAAAGATTTGGGTATTGAAGACCCTGAACCTGCAATTGCTTTTGTAATTAGAGAACAGCTCTATGAGATAGCTGTGCAGAATGTTAATTCATCAAGAGAAAGCAGAATGAGCAAGTTTGAGCATGTTCCTGCAAGCATACTCAGAACCATTCCAAAAGTTACTGAAAGACCGACTCATAAAGGATGA

Protein sequence

MEALASAHSKAPFKFRIPTAEYLIPIRLDIEIDGQRFKDAFTWNSSDSEGALCKEDGERFKASPLQLTEFQSFEGQDMYSGETVISIKLDLRVNNTLIKDQSLWDLNNYESDPEEFSMTFCKDLGIEDPEPAIAFVIREQLYEIAVQNVNSSRESRMSKFEHVPASILRTIPKVTERPTHKG

Homology

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BLAST of Carg19590 vs. NCBI nr
Match: XP_022138107.1 (chromatin structure-remodeling complex protein BSH isoform X3 [Momordica charantia])

HSP 1 Score: 241.9 bits (616), Expect = 1.7e-60
Identity = 131/187 (70.05%), Postives = 141/187 (75.40%), Query Frame = 0


Query: 1   MEALASAHSKAPFKFRIPTAEYLIPIRLDIEIDGQRFKDAFTWNSSDSEG---ALCKEDG 60
           M+A ASAHSK PFKFRIPTAE L+PIRLDIEIDGQRFKDAFTWN SD +       K   
Sbjct: 1   MKASASAHSKTPFKFRIPTAENLVPIRLDIEIDGQRFKDAFTWNPSDPDSEVVVFAKRTV 60

Query: 61  ERFKASPL-----------QLTEFQSFEGQDMYSGETVISIKLDLRVNNTLIKDQSLWDL 120
           +  K  P            QLTEF+SFEGQDMY+GE +I IKLDLRVNNTLIKDQ LWDL
Sbjct: 61  KDLKLPPAFMTQIAQSIQSQLTEFRSFEGQDMYTGEKIIPIKLDLRVNNTLIKDQFLWDL 120

Query: 121 NNYESDPEEFSMTFCKDLGIEDPE--PAIAFVIREQLYEIAVQNVNSSRESRMSK----- 167
           NNYESDPEEFS T CKDLGIEDPE  PA+A  IREQLYEIA+QNV S+RESRMSK     
Sbjct: 121 NNYESDPEEFSRTLCKDLGIEDPEVGPAVAVAIREQLYEIAMQNVASARESRMSKKGRRG 180

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BLAST of Carg19590 vs. NCBI nr
Match: XP_022138105.1 (chromatin structure-remodeling complex protein BSH isoform X1 [Momordica charantia])

HSP 1 Score: 241.9 bits (616), Expect = 1.7e-60
Identity = 131/187 (70.05%), Postives = 141/187 (75.40%), Query Frame = 0


Query: 1   MEALASAHSKAPFKFRIPTAEYLIPIRLDIEIDGQRFKDAFTWNSSDSEG---ALCKEDG 60
           M+A ASAHSK PFKFRIPTAE L+PIRLDIEIDGQRFKDAFTWN SD +       K   
Sbjct: 1   MKASASAHSKTPFKFRIPTAENLVPIRLDIEIDGQRFKDAFTWNPSDPDSEVVVFAKRTV 60

Query: 61  ERFKASPL-----------QLTEFQSFEGQDMYSGETVISIKLDLRVNNTLIKDQSLWDL 120
           +  K  P            QLTEF+SFEGQDMY+GE +I IKLDLRVNNTLIKDQ LWDL
Sbjct: 61  KDLKLPPAFMTQIAQSIQSQLTEFRSFEGQDMYTGEKIIPIKLDLRVNNTLIKDQFLWDL 120

Query: 121 NNYESDPEEFSMTFCKDLGIEDPE--PAIAFVIREQLYEIAVQNVNSSRESRMSK----- 167
           NNYESDPEEFS T CKDLGIEDPE  PA+A  IREQLYEIA+QNV S+RESRMSK     
Sbjct: 121 NNYESDPEEFSRTLCKDLGIEDPEVGPAVAVAIREQLYEIAMQNVASARESRMSKKGRRG 180

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BLAST of Carg19590 vs. NCBI nr
Match: XP_022138106.1 (chromatin structure-remodeling complex protein BSH isoform X2 [Momordica charantia])

HSP 1 Score: 241.9 bits (616), Expect = 1.7e-60
Identity = 131/187 (70.05%), Postives = 141/187 (75.40%), Query Frame = 0


Query: 1   MEALASAHSKAPFKFRIPTAEYLIPIRLDIEIDGQRFKDAFTWNSSDSEG---ALCKEDG 60
           M+A ASAHSK PFKFRIPTAE L+PIRLDIEIDGQRFKDAFTWN SD +       K   
Sbjct: 1   MKASASAHSKTPFKFRIPTAENLVPIRLDIEIDGQRFKDAFTWNPSDPDSEVVVFAKRTV 60

Query: 61  ERFKASPL-----------QLTEFQSFEGQDMYSGETVISIKLDLRVNNTLIKDQSLWDL 120
           +  K  P            QLTEF+SFEGQDMY+GE +I IKLDLRVNNTLIKDQ LWDL
Sbjct: 61  KDLKLPPAFMTQIAQSIQSQLTEFRSFEGQDMYTGEKIIPIKLDLRVNNTLIKDQFLWDL 120

Query: 121 NNYESDPEEFSMTFCKDLGIEDPE--PAIAFVIREQLYEIAVQNVNSSRESRMSK----- 167
           NNYESDPEEFS T CKDLGIEDPE  PA+A  IREQLYEIA+QNV S+RESRMSK     
Sbjct: 121 NNYESDPEEFSRTLCKDLGIEDPEVGPAVAVAIREQLYEIAMQNVASARESRMSKKGRRG 180

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BLAST of Carg19590 vs. NCBI nr
Match: XP_004147636.1 (PREDICTED: chromatin structure-remodeling complex protein BSH isoform X1 [Cucumis sativus] >KGN57214.1 hypothetical protein Csa_3G171220 [Cucumis sativus])

HSP 1 Score: 240.4 bits (612), Expect = 4.9e-60
Identity = 131/187 (70.05%), Postives = 140/187 (74.87%), Query Frame = 0


Query: 1   MEALASAHSKAPFKFRIPTAEYLIPIRLDIEIDGQRFKDAFTWNSSDSEG---ALCKEDG 60
           M+A AS HSKAPFKFRIPTAE L+PIRLDIEIDGQRFKDAFTWN SD +       K   
Sbjct: 1   MKASASPHSKAPFKFRIPTAENLVPIRLDIEIDGQRFKDAFTWNPSDPDSEVVVFAKRTV 60

Query: 61  ERFKASPL-----------QLTEFQSFEGQDMYSGETVISIKLDLRVNNTLIKDQSLWDL 120
           +  K  P            QLTEF+SFEGQDMY+GE +I IKLDLRVNNTLIKDQ LWDL
Sbjct: 61  KDLKLPPAFITQIAQSIQSQLTEFRSFEGQDMYTGEKIIPIKLDLRVNNTLIKDQFLWDL 120

Query: 121 NNYESDPEEFSMTFCKDLGIEDPE--PAIAFVIREQLYEIAVQNVNSSRESRMSK----- 167
           NNYESDPEEFS T CKDLGI+DPE  PAIA  IREQLYEIAVQNV S+RESRMSK     
Sbjct: 121 NNYESDPEEFSRTLCKDLGIDDPEVGPAIAVAIREQLYEIAVQNVASARESRMSKKGRRG 180

[Close]

BLAST of Carg19590 vs. NCBI nr
Match: XP_008439008.1 (PREDICTED: chromatin structure-remodeling complex protein BSH isoform X1 [Cucumis melo])

HSP 1 Score: 239.6 bits (610), Expect = 8.4e-60
Identity = 130/187 (69.52%), Postives = 140/187 (74.87%), Query Frame = 0


Query: 1   MEALASAHSKAPFKFRIPTAEYLIPIRLDIEIDGQRFKDAFTWNSSDSEG---ALCKEDG 60
           M+A AS HSKAPFKFRIPTAE L+PIRLDIEIDGQRFKDAFTWN SD +       K   
Sbjct: 1   MKASASPHSKAPFKFRIPTAENLVPIRLDIEIDGQRFKDAFTWNPSDPDSEVVVFAKRTV 60

Query: 61  ERFKASPL-----------QLTEFQSFEGQDMYSGETVISIKLDLRVNNTLIKDQSLWDL 120
           +  K  P            QLTEF+SFEGQDMY+GE +I IKLDLRVNNT+IKDQ LWDL
Sbjct: 61  KDLKLPPAFITQIAQSIQSQLTEFRSFEGQDMYTGEKIIPIKLDLRVNNTIIKDQFLWDL 120

Query: 121 NNYESDPEEFSMTFCKDLGIEDPE--PAIAFVIREQLYEIAVQNVNSSRESRMSK----- 167
           NNYESDPEEFS T CKDLGI+DPE  PAIA  IREQLYEIAVQNV S+RESRMSK     
Sbjct: 121 NNYESDPEEFSRTLCKDLGIDDPEVGPAIAVAIREQLYEIAVQNVASARESRMSKKGRRG 180

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BLAST of Carg19590 vs. TAIR10
Match: AT3G17590.2 (transcription regulatory protein SNF5, putative (BSH))

HSP 1 Score: 199.1 bits (505), Expect = 2.3e-51
Identity = 105/177 (59.32%), Postives = 128/177 (72.32%), Query Frame = 0


Query: 1   MEALASAHSKAPFKFRI--PTAEYLIPIRLDIEIDGQRFKDAFTWNSSDSEGALCKEDGE 60
           M+ L S   K P KFRI  PTAE L+PIRLDI+ +GQR+KDAFTWN SD +  +      
Sbjct: 1   MKGLVSTGWKGPVKFRIYRPTAENLVPIRLDIQFEGQRYKDAFTWNPSDPDNEVVIFAKR 60

Query: 61  RFKASPL--------------QLTEFQSFEGQDMYSGETVISIKLDLRVNNTLIKDQSLW 120
             K   L              QL++F+++EGQDMY+GE +I IKLDLRVN+TLIKDQ LW
Sbjct: 61  TVKDLKLPYAFVTQIAQSIQSQLSDFRAYEGQDMYTGEKIIPIKLDLRVNHTLIKDQFLW 120

Query: 121 DLNNYESDPEEFSMTFCKDLGIEDPE--PAIAFVIREQLYEIAVQNVNSSRESRMSK 160
           DLNN+ESDPEEF+ T CKDLG+EDPE  PA+AF IREQLYEIA+Q+V S+RESR+SK
Sbjct: 121 DLNNFESDPEEFARTLCKDLGVEDPEVGPAVAFAIREQLYEIAIQSVASARESRLSK 177

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BLAST of Carg19590 vs. Swiss-Prot
Match: sp|P93045|BSH_ARATH (Chromatin structure-remodeling complex protein BSH OS=Arabidopsis thaliana OX=3702 GN=BSH PE=1 SV=2)

HSP 1 Score: 203.0 bits (515), Expect = 2.9e-51
Identity = 104/175 (59.43%), Postives = 128/175 (73.14%), Query Frame = 0


Query: 1   MEALASAHSKAPFKFRIPTAEYLIPIRLDIEIDGQRFKDAFTWNSSDSEGALCKEDGERF 60
           M+ L S   K P KFR+PTAE L+PIRLDI+ +GQR+KDAFTWN SD +  +        
Sbjct: 1   MKGLVSTGWKGPVKFRMPTAENLVPIRLDIQFEGQRYKDAFTWNPSDPDNEVVIFAKRTV 60

Query: 61  KASPL--------------QLTEFQSFEGQDMYSGETVISIKLDLRVNNTLIKDQSLWDL 120
           K   L              QL++F+++EGQDMY+GE +I IKLDLRVN+TLIKDQ LWDL
Sbjct: 61  KDLKLPYAFVTQIAQSIQSQLSDFRAYEGQDMYTGEKIIPIKLDLRVNHTLIKDQFLWDL 120

Query: 121 NNYESDPEEFSMTFCKDLGIEDPE--PAIAFVIREQLYEIAVQNVNSSRESRMSK 160
           NN+ESDPEEF+ T CKDLG+EDPE  PA+AF IREQLYEIA+Q+V S+RESR+SK
Sbjct: 121 NNFESDPEEFARTLCKDLGVEDPEVGPAVAFAIREQLYEIAIQSVASARESRLSK 175

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BLAST of Carg19590 vs. Swiss-Prot
Match: sp|Q5U379|SNF5_DANRE (SWI/SNF-related matrix-associated actin-dependent regulator of chromatin subfamily B member 1-A OS=Danio rerio OX=7955 GN=smarcb1a PE=2 SV=1)

HSP 1 Score: 73.9 bits (180), Expect = 2.0e-12
Identity = 51/154 (33.12%), Postives = 75/154 (48.70%), Query Frame = 0


Query: 8   HSKAPFKFRIPTAEYLIPIRLDIEIDGQRFKDAFTWNSSDS-------EGALCKEDGERF 67
           H  A         E L+PIRLD+EIDGQ+ +DAFTWN ++           LC +     
Sbjct: 159 HDPAVIHENASQQEVLVPIRLDMEIDGQKLRDAFTWNMNEKLMTPEMFAEILCDD----L 218

Query: 68  KASPL------------QLTEFQSFEGQDMYSGETVISIKLDLRVNNTLIKDQSLWDLNN 127
             SPL            Q+  + +    D    + VI IKL++ V N  + DQ  WD++ 
Sbjct: 219 DLSPLTFVPAIASAIRQQIESYPTDSILDEQMDQRVI-IKLNIHVGNISLVDQFEWDMSE 278

Query: 128 YESDPEEFSMTFCKDLGI-EDPEPAIAFVIREQL 142
            E+ PE+F++  C +LG+  +    IA+ IR QL
Sbjct: 279 KENSPEKFALKLCSELGLGGEFVTTIAYSIRGQL 307

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BLAST of Carg19590 vs. Swiss-Prot
Match: sp|Q6DFM1|SNF5_XENTR (SWI/SNF-related matrix-associated actin-dependent regulator of chromatin subfamily B member 1 OS=Xenopus tropicalis OX=8364 GN=smarcb1 PE=2 SV=1)

HSP 1 Score: 73.6 bits (179), Expect = 2.6e-12
Identity = 50/154 (32.47%), Postives = 77/154 (50.00%), Query Frame = 0


Query: 8   HSKAPFKFRIPTAEYLIPIRLDIEIDGQRFKDAFTWNSSDS-------EGALCKEDGERF 67
           H  A        +E L+PIRLD+EIDGQ+ +DAFTWN ++           LC +     
Sbjct: 164 HDPAVIHENAAQSEVLVPIRLDMEIDGQKLRDAFTWNMNEKLMTPEMFAEILCDD----L 223

Query: 68  KASPL------------QLTEFQSFEGQDMYSGETVISIKLDLRVNNTLIKDQSLWDLNN 127
             +PL            Q+  + +    +  S + VI IKL++ V N  + DQ  WD++ 
Sbjct: 224 DLNPLAFVPAIASAIRQQIESYPTDSILEDQSDQRVI-IKLNIHVGNISLVDQFEWDMSE 283

Query: 128 YESDPEEFSMTFCKDLGI-EDPEPAIAFVIREQL 142
            E+ PE+F++  C +LG+  +    IA+ IR QL
Sbjct: 284 KENSPEKFALKLCSELGLGGEFVTTIAYSIRGQL 312

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BLAST of Carg19590 vs. Swiss-Prot
Match: sp|Q5BIN2|SNF5_BOVIN (SWI/SNF-related matrix-associated actin-dependent regulator of chromatin subfamily B member 1 OS=Bos taurus OX=9913 GN=SMARCB1 PE=2 SV=1)

HSP 1 Score: 73.2 bits (178), Expect = 3.4e-12
Identity = 50/154 (32.47%), Postives = 76/154 (49.35%), Query Frame = 0


Query: 8   HSKAPFKFRIPTAEYLIPIRLDIEIDGQRFKDAFTWNSSDS-------EGALCKEDGERF 67
           H  A         E L+PIRLD+EIDGQ+ +DAFTWN ++           LC +     
Sbjct: 171 HDPAVIHENASQPEVLVPIRLDMEIDGQKLRDAFTWNMNEKLMTPEMFSEILCDD----L 230

Query: 68  KASPL------------QLTEFQSFEGQDMYSGETVISIKLDLRVNNTLIKDQSLWDLNN 127
             +PL            Q+  + +    +  S + VI IKL++ V N  + DQ  WD++ 
Sbjct: 231 DLNPLTFVPAIASAIRQQIESYPTDSILEDQSDQRVI-IKLNIHVGNISLVDQFEWDMSE 290

Query: 128 YESDPEEFSMTFCKDLGI-EDPEPAIAFVIREQL 142
            E+ PE+F++  C +LG+  +    IA+ IR QL
Sbjct: 291 KENSPEKFALKLCSELGLGGEFVTTIAYSIRGQL 319

[Close]

BLAST of Carg19590 vs. Swiss-Prot
Match: sp|Q5ZK40|SNF5_CHICK (SWI/SNF-related matrix-associated actin-dependent regulator of chromatin subfamily B member 1 OS=Gallus gallus OX=9031 GN=SMARCB1 PE=2 SV=1)

HSP 1 Score: 73.2 bits (178), Expect = 3.4e-12
Identity = 50/154 (32.47%), Postives = 76/154 (49.35%), Query Frame = 0


Query: 8   HSKAPFKFRIPTAEYLIPIRLDIEIDGQRFKDAFTWNSSDS-------EGALCKEDGERF 67
           H  A         E L+PIRLD+EIDGQ+ +DAFTWN ++           LC +     
Sbjct: 172 HDPAVIHENASQPEVLVPIRLDMEIDGQKLRDAFTWNMNEKLMTPEMFSEILCDD----L 231

Query: 68  KASPL------------QLTEFQSFEGQDMYSGETVISIKLDLRVNNTLIKDQSLWDLNN 127
             +PL            Q+  + +    +  S + VI IKL++ V N  + DQ  WD++ 
Sbjct: 232 DLNPLTFVPAIASAIRQQIESYPTDSILEDQSDQRVI-IKLNIHVGNISLVDQFEWDMSE 291

Query: 128 YESDPEEFSMTFCKDLGI-EDPEPAIAFVIREQL 142
            E+ PE+F++  C +LG+  +    IA+ IR QL
Sbjct: 292 KENSPEKFALKLCSELGLGGEFVTTIAYSIRGQL 320

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BLAST of Carg19590 vs. TrEMBL
Match: tr|A0A0A0L868|A0A0A0L868_CUCSA (Uncharacterized protein OS=Cucumis sativus OX=3659 GN=Csa_3G171220 PE=4 SV=1)

HSP 1 Score: 240.4 bits (612), Expect = 3.3e-60
Identity = 131/187 (70.05%), Postives = 140/187 (74.87%), Query Frame = 0


Query: 1   MEALASAHSKAPFKFRIPTAEYLIPIRLDIEIDGQRFKDAFTWNSSDSEG---ALCKEDG 60
           M+A AS HSKAPFKFRIPTAE L+PIRLDIEIDGQRFKDAFTWN SD +       K   
Sbjct: 1   MKASASPHSKAPFKFRIPTAENLVPIRLDIEIDGQRFKDAFTWNPSDPDSEVVVFAKRTV 60

Query: 61  ERFKASPL-----------QLTEFQSFEGQDMYSGETVISIKLDLRVNNTLIKDQSLWDL 120
           +  K  P            QLTEF+SFEGQDMY+GE +I IKLDLRVNNTLIKDQ LWDL
Sbjct: 61  KDLKLPPAFITQIAQSIQSQLTEFRSFEGQDMYTGEKIIPIKLDLRVNNTLIKDQFLWDL 120

Query: 121 NNYESDPEEFSMTFCKDLGIEDPE--PAIAFVIREQLYEIAVQNVNSSRESRMSK----- 167
           NNYESDPEEFS T CKDLGI+DPE  PAIA  IREQLYEIAVQNV S+RESRMSK     
Sbjct: 121 NNYESDPEEFSRTLCKDLGIDDPEVGPAIAVAIREQLYEIAVQNVASARESRMSKKGRRG 180

[Close]

BLAST of Carg19590 vs. TrEMBL
Match: tr|A0A1S3AXP6|A0A1S3AXP6_CUCME (chromatin structure-remodeling complex protein BSH isoform X1 OS=Cucumis melo OX=3656 GN=LOC103483932 PE=4 SV=1)

HSP 1 Score: 239.6 bits (610), Expect = 5.6e-60
Identity = 130/187 (69.52%), Postives = 140/187 (74.87%), Query Frame = 0


Query: 1   MEALASAHSKAPFKFRIPTAEYLIPIRLDIEIDGQRFKDAFTWNSSDSEG---ALCKEDG 60
           M+A AS HSKAPFKFRIPTAE L+PIRLDIEIDGQRFKDAFTWN SD +       K   
Sbjct: 1   MKASASPHSKAPFKFRIPTAENLVPIRLDIEIDGQRFKDAFTWNPSDPDSEVVVFAKRTV 60

Query: 61  ERFKASPL-----------QLTEFQSFEGQDMYSGETVISIKLDLRVNNTLIKDQSLWDL 120
           +  K  P            QLTEF+SFEGQDMY+GE +I IKLDLRVNNT+IKDQ LWDL
Sbjct: 61  KDLKLPPAFITQIAQSIQSQLTEFRSFEGQDMYTGEKIIPIKLDLRVNNTIIKDQFLWDL 120

Query: 121 NNYESDPEEFSMTFCKDLGIEDPE--PAIAFVIREQLYEIAVQNVNSSRESRMSK----- 167
           NNYESDPEEFS T CKDLGI+DPE  PAIA  IREQLYEIAVQNV S+RESRMSK     
Sbjct: 121 NNYESDPEEFSRTLCKDLGIDDPEVGPAIAVAIREQLYEIAVQNVASARESRMSKKGRRG 180

[Close]

BLAST of Carg19590 vs. TrEMBL
Match: tr|A0A2I4G8N1|A0A2I4G8N1_9ROSI (chromatin structure-remodeling complex protein BSH isoform X3 OS=Juglans regia OX=51240 GN=LOC109005667 PE=4 SV=1)

HSP 1 Score: 222.2 bits (565), Expect = 9.2e-55
Identity = 118/187 (63.10%), Postives = 139/187 (74.33%), Query Frame = 0


Query: 1   MEALASAHSKAPFKFRIPTAEYLIPIRLDIEIDGQRFKDAFTWNSSDSE---GALCKEDG 60
           M+A AS  SKAP KFR+PTA+ L+PIRLDIEIDGQRFKDAFTWN SD +       K   
Sbjct: 1   MKAPASTFSKAPVKFRMPTADNLVPIRLDIEIDGQRFKDAFTWNPSDPDSEVAVFAKRTV 60

Query: 61  ERFKASPL-----------QLTEFQSFEGQDMYSGETVISIKLDLRVNNTLIKDQSLWDL 120
           +  K  P            QL EF+SFEGQDMY+GE ++ IKLDLRVN+TLIKDQ LWDL
Sbjct: 61  KDLKLPPAFITQIASSIQSQLAEFRSFEGQDMYTGEKIVPIKLDLRVNHTLIKDQFLWDL 120

Query: 121 NNYESDPEEFSMTFCKDLGIEDPE--PAIAFVIREQLYEIAVQNVNSSRESRMSK----- 167
           NN+ESDPEEF+ TFC+DLGIEDPE  PA+AF IREQL+E+A Q+V S+RESR+SK     
Sbjct: 121 NNFESDPEEFARTFCRDLGIEDPEVGPAVAFAIREQLFEVATQSVASARESRLSKKGRRG 180

[Close]

BLAST of Carg19590 vs. TrEMBL
Match: tr|A0A2I4G8L5|A0A2I4G8L5_9ROSI (chromatin structure-remodeling complex protein BSH isoform X1 OS=Juglans regia OX=51240 GN=LOC109005667 PE=4 SV=1)

HSP 1 Score: 222.2 bits (565), Expect = 9.2e-55
Identity = 118/187 (63.10%), Postives = 139/187 (74.33%), Query Frame = 0


Query: 1   MEALASAHSKAPFKFRIPTAEYLIPIRLDIEIDGQRFKDAFTWNSSDSE---GALCKEDG 60
           M+A AS  SKAP KFR+PTA+ L+PIRLDIEIDGQRFKDAFTWN SD +       K   
Sbjct: 1   MKAPASTFSKAPVKFRMPTADNLVPIRLDIEIDGQRFKDAFTWNPSDPDSEVAVFAKRTV 60

Query: 61  ERFKASPL-----------QLTEFQSFEGQDMYSGETVISIKLDLRVNNTLIKDQSLWDL 120
           +  K  P            QL EF+SFEGQDMY+GE ++ IKLDLRVN+TLIKDQ LWDL
Sbjct: 61  KDLKLPPAFITQIASSIQSQLAEFRSFEGQDMYTGEKIVPIKLDLRVNHTLIKDQFLWDL 120

Query: 121 NNYESDPEEFSMTFCKDLGIEDPE--PAIAFVIREQLYEIAVQNVNSSRESRMSK----- 167
           NN+ESDPEEF+ TFC+DLGIEDPE  PA+AF IREQL+E+A Q+V S+RESR+SK     
Sbjct: 121 NNFESDPEEFARTFCRDLGIEDPEVGPAVAFAIREQLFEVATQSVASARESRLSKKGRRG 180

[Close]

BLAST of Carg19590 vs. TrEMBL
Match: tr|A0A2I4G8K6|A0A2I4G8K6_9ROSI (chromatin structure-remodeling complex protein BSH isoform X2 OS=Juglans regia OX=51240 GN=LOC109005667 PE=4 SV=1)

HSP 1 Score: 222.2 bits (565), Expect = 9.2e-55
Identity = 118/187 (63.10%), Postives = 139/187 (74.33%), Query Frame = 0


Query: 1   MEALASAHSKAPFKFRIPTAEYLIPIRLDIEIDGQRFKDAFTWNSSDSE---GALCKEDG 60
           M+A AS  SKAP KFR+PTA+ L+PIRLDIEIDGQRFKDAFTWN SD +       K   
Sbjct: 1   MKAPASTFSKAPVKFRMPTADNLVPIRLDIEIDGQRFKDAFTWNPSDPDSEVAVFAKRTV 60

Query: 61  ERFKASPL-----------QLTEFQSFEGQDMYSGETVISIKLDLRVNNTLIKDQSLWDL 120
           +  K  P            QL EF+SFEGQDMY+GE ++ IKLDLRVN+TLIKDQ LWDL
Sbjct: 61  KDLKLPPAFITQIASSIQSQLAEFRSFEGQDMYTGEKIVPIKLDLRVNHTLIKDQFLWDL 120

Query: 121 NNYESDPEEFSMTFCKDLGIEDPE--PAIAFVIREQLYEIAVQNVNSSRESRMSK----- 167
           NN+ESDPEEF+ TFC+DLGIEDPE  PA+AF IREQL+E+A Q+V S+RESR+SK     
Sbjct: 121 NNFESDPEEFARTFCRDLGIEDPEVGPAVAFAIREQLFEVATQSVASARESRLSKKGRRG 180

The following BLAST results are available for this feature:

BLAST of Carg19590 vs. NCBI nr


Match Name	E-value	Identity	Description
XP_022138107.1	1.7e-60	70.05	chromatin structure-remodeling complex protein BSH isoform X3 [Momordica charant...	[more]
XP_022138105.1	1.7e-60	70.05	chromatin structure-remodeling complex protein BSH isoform X1 [Momordica charant...	[more]
XP_022138106.1	1.7e-60	70.05	chromatin structure-remodeling complex protein BSH isoform X2 [Momordica charant...	[more]
XP_004147636.1	4.9e-60	70.05	PREDICTED: chromatin structure-remodeling complex protein BSH isoform X1 [Cucumi...	[more]
XP_008439008.1	8.4e-60	69.52	PREDICTED: chromatin structure-remodeling complex protein BSH isoform X1 [Cucumi...	[more]

BLAST of Carg19590 vs. TAIR10


Match Name	E-value	Identity	Description
AT3G17590.2	2.3e-51	59.32	transcription regulatory protein SNF5, putative (BSH)	[more]

BLAST of Carg19590 vs. Swiss-Prot


Match Name	E-value	Identity	Description
sp\|P93045\|BSH_ARATH	2.9e-51	59.43	Chromatin structure-remodeling complex protein BSH OS=Arabidopsis thaliana OX=37...	[more]
sp\|Q5U379\|SNF5_DANRE	2.0e-12	33.12	SWI/SNF-related matrix-associated actin-dependent regulator of chromatin subfami...	[more]
sp\|Q6DFM1\|SNF5_XENTR	2.6e-12	32.47	SWI/SNF-related matrix-associated actin-dependent regulator of chromatin subfami...	[more]
sp\|Q5BIN2\|SNF5_BOVIN	3.4e-12	32.47	SWI/SNF-related matrix-associated actin-dependent regulator of chromatin subfami...	[more]
sp\|Q5ZK40\|SNF5_CHICK	3.4e-12	32.47	SWI/SNF-related matrix-associated actin-dependent regulator of chromatin subfami...	[more]

BLAST of Carg19590 vs. TrEMBL


Match Name	E-value	Identity	Description
tr\|A0A0A0L868\|A0A0A0L868_CUCSA	3.3e-60	70.05	Uncharacterized protein OS=Cucumis sativus OX=3659 GN=Csa_3G171220 PE=4 SV=1	[more]
tr\|A0A1S3AXP6\|A0A1S3AXP6_CUCME	5.6e-60	69.52	chromatin structure-remodeling complex protein BSH isoform X1 OS=Cucumis melo OX...	[more]
tr\|A0A2I4G8N1\|A0A2I4G8N1_9ROSI	9.2e-55	63.10	chromatin structure-remodeling complex protein BSH isoform X3 OS=Juglans regia O...	[more]
tr\|A0A2I4G8L5\|A0A2I4G8L5_9ROSI	9.2e-55	63.10	chromatin structure-remodeling complex protein BSH isoform X1 OS=Juglans regia O...	[more]
tr\|A0A2I4G8K6\|A0A2I4G8K6_9ROSI	9.2e-55	63.10	chromatin structure-remodeling complex protein BSH isoform X2 OS=Juglans regia O...	[more]

Annotated Terms

The following terms have been associated with this gene:

Vocabulary: **Biological Process**
Term	Definition
GO:0006338	chromatin remodeling

Vocabulary: **Cellular Component**
Term	Definition
GO:0000228	nuclear chromosome

Vocabulary: **INTERPRO**
Term	Definition
IPR006939	SNF5

GO Annotation

GO Assignments

This gene is annotated with the following GO terms.

Category	Term Accession	Term Name
biological_process	GO:0006338	chromatin remodeling
cellular_component	GO:0000228	nuclear chromosome
molecular_function	GO:0003674	molecular_function

Relationships

The following mRNA feature(s) are a part of this gene:


Feature Name	Unique Name	Type
Carg19590-RA	Carg19590-RA	mRNA

InterPro

Analysis Name: InterPro Annotations of silver-seed gourd
Date Performed: 2019-03-07


IPR Term	IPR Description	Source	Source Term	Source Description	Alignment
IPR006939	SNF5/SMARCB1/INI1	PFAM	PF04855	SNF5	coord: 20..48 e-value: 2.5E-7 score: 30.6 coord: 80..143 e-value: 8.2E-11 score: 42.0
IPR006939	SNF5/SMARCB1/INI1	PANTHER	PTHR10019	SNF5	coord: 18..48
IPR006939	SNF5/SMARCB1/INI1	PANTHER	PTHR10019	SNF5	coord: 66..173
None	No IPR available	PANTHER	PTHR10019:SF5	SWI/SNF-RELATED MATRIX-ASSOCIATED ACTIN-DEPENDENT REGULATOR OF CHROMATIN SUBFAMILY B MEMBER 1	coord: 66..173 coord: 18..48

Synteny

The following gene(s) are orthologous to this gene:


Gene	Orthologue	Organism	Block
Carg19590	Cla021836	Watermelon (97103) v1	carwmB0269
Carg19590	Csa3G171220	Cucumber (Chinese Long) v2	carcuB0306
Carg19590	MELO3C006760	Melon (DHL92) v3.5.1	carmeB0280
Carg19590	ClCG05G006940	Watermelon (Charleston Gray)	carwcgB0271
Carg19590	CSPI03G15440	Wild cucumber (PI 183967)	carcpiB0310
Carg19590	Cucsa.252100	Cucumber (Gy14) v1	carcgyB0329
Carg19590	CmaCh06G015930	Cucurbita maxima (Rimu)	carcmaB0393
Carg19590	CmaCh14G015520	Cucurbita maxima (Rimu)	carcmaB0391
Carg19590	CmoCh06G015880	Cucurbita moschata (Rifu)	carcmoB0390
Carg19590	CmoCh14G015880	Cucurbita moschata (Rifu)	carcmoB0388
Carg19590	Lsi05G013780	Bottle gourd (USVL1VR-Ls)	carlsiB253
Carg19590	Cp4.1LG03g12080	Cucurbita pepo (Zucchini)	carcpeB0395
Carg19590	Cp4.1LG08g05440	Cucurbita pepo (Zucchini)	carcpeB0396
Carg19590	CsGy3G015510	Cucumber (Gy14) v2	carcgybB0294
Carg19590	MELO3C006760.2	Melon (DHL92) v3.6.1	carmedB0292
Carg19590	CsaV3_3G015610	Cucumber (Chinese Long) v3	carcucB0309
Carg19590	Cla97C05G088590	Watermelon (97103) v2	carwmbB0287
Carg19590	Bhi01G000832	Wax gourd	carwgoB0365

The following gene(s) are paralogous to this gene:


Gene	Paralogue	Organism	Block
Carg19590	Carg25662	Silver-seed gourd	carcarB317

The following block(s) are covering this gene:

None