WMU57527 (transcribed_cluster) Watermelon (97103) v1 | Cucurbit Genomics Database (CuGenDB)

Overview


Name	WMU57527
Type	transcribed_cluster
Organism	Citrullus. lanatus (Watermelon (97103) v1)
Description	Unknown protein
Location	Chr5 : 6718240 .. 6719235 (-)
Sequence length	366

Genome Viewer

Sequences

The following sequences are available for this feature:

transcribed_cluster sequence

CCGAGCAACACTTGATCTATGACCAAAATAACTTCACCAAGTCCACCGAAGCACCTCCAGTTTTACTTACTGGAACATGCTCGAATCCTCGGCGGCCCTTCTTGCTCATTCTGCCTTCTCTTGCTGAAGCGACATTCTGCACTGCTATCTCATAGAGCTGTTCTCTAATCGCAAAAGCAATTGCAGGTCCAACTTCAGGGTCTTCAATACCCAAATCTTTGCATAATGTCCTGGAGAACTCTTCAGGGTCACTCTCATAGTTGTTCAAGTCCCACAGAAACTGATCCTTTATAAGCGTATTGTTCACTCGGAGATCAAGCTTGATTGGAATAATCTTTTCACCAGTATACATATCTTGACCTTCAA

Library


Library category	ESTs
watermelon fruit 10d library	1

Homology

[Close]

BLAST of WMU57527 vs. TAIR10
Match: AT3G17590.2 (AT3G17590.2 transcription regulatory protein SNF5, putative (BSH))

HSP 1 Score: 197.6 bits (501), Expect = 4.4e-51
Identity = 94/113 (83.19%), Postives = 103/113 (91.15%), Query Frame = -3


Query: 26  EGQDMYTGEKIIPIKLDLRVNNTLIKDQFLWDLNNYESDPEEFSRTLCKDLGIEDPEVGP 85
           EGQDMYTGEKIIPIKLDLRVN+TLIKDQFLWDLNN+ESDPEEF+RTLCKDLG+EDPEVGP
Sbjct: 90  EGQDMYTGEKIIPIKLDLRVNHTLIKDQFLWDLNNFESDPEEFARTLCKDLGVEDPEVGP 149

Query: 86  AIAFAIREQLYEIAVQNVASAREGRMSKKGRRGFEHVPVSKTGGASVDLVKLF 145
           A+AFAIREQLYEIA+Q+VASARE R+SKKGRRG +H   SK  G S+DL+KLF
Sbjct: 150 AVAFAIREQLYEIAIQSVASARESRLSKKGRRGSDHGSASKASGLSMDLMKLF 202

Query: 146  205
           
Sbjct: 210  202

Query: 206  265
           
Sbjct: 270  202

Query: 266  325
           
Sbjct: 330  202

Query: 326  365
           
Sbjct: 390  202

HSP 2 Score: 35.4 bits (80), Expect = 2.9e-02
Identity = 20/64 (31.25%), Postives = 35/64 (54.69%), Query Frame = -3


Query: 155 TGEKIIPIKLDLRVNNTLIKDQFLWDLNNYESDPEEFSRTLCKDLGIEDPEVGPAIAFAI 214
           T E ++PI+LD++      KD F W+ ++ +++   F++   KDL +    V   IA +I
Sbjct: 21  TAENLVPIRLDIQFEGQRYKDAFTWNPSDPDNEVVIFAKRTVKDLKLPYAFV-TQIAQSI 80

Query: 215 REQL 274
           + QL
Sbjct: 81  QSQL 83

Query: 275  334
           
Sbjct: 141  83

Query: 335  347
           
Sbjct: 201  83

[Close]

BLAST of WMU57527 vs. Swiss-Prot
Match: BSH_ARATH (Chromatin structure-remodeling complex protein BSH OS=Arabidopsis thaliana GN=BSH PE=1 SV=2)

HSP 1 Score: 197.6 bits (501), Expect = 7.9e-50
Identity = 94/113 (83.19%), Postives = 103/113 (91.15%), Query Frame = -3


Query: 26  EGQDMYTGEKIIPIKLDLRVNNTLIKDQFLWDLNNYESDPEEFSRTLCKDLGIEDPEVGP 85
           EGQDMYTGEKIIPIKLDLRVN+TLIKDQFLWDLNN+ESDPEEF+RTLCKDLG+EDPEVGP
Sbjct: 88  EGQDMYTGEKIIPIKLDLRVNHTLIKDQFLWDLNNFESDPEEFARTLCKDLGVEDPEVGP 147

Query: 86  AIAFAIREQLYEIAVQNVASAREGRMSKKGRRGFEHVPVSKTGGASVDLVKLF 145
           A+AFAIREQLYEIA+Q+VASARE R+SKKGRRG +H   SK  G S+DL+KLF
Sbjct: 148 AVAFAIREQLYEIAIQSVASARESRLSKKGRRGSDHGSASKASGLSMDLMKLF 200

Query: 146  205
           
Sbjct: 208  200

Query: 206  265
           
Sbjct: 268  200

Query: 266  325
           
Sbjct: 328  200

Query: 326  365
           
Sbjct: 388  200

HSP 2 Score: 36.2 bits (82), Expect = 3.0e-01
Identity = 21/66 (31.82%), Postives = 36/66 (54.55%), Query Frame = -3


Query: 155 MYTGEKIIPIKLDLRVNNTLIKDQFLWDLNNYESDPEEFSRTLCKDLGIEDPEVGPAIAF 214
           M T E ++PI+LD++      KD F W+ ++ +++   F++   KDL +    V   IA 
Sbjct: 17  MPTAENLVPIRLDIQFEGQRYKDAFTWNPSDPDNEVVIFAKRTVKDLKLPYAFV-TQIAQ 76

Query: 215 AIREQL 274
           +I+ QL
Sbjct: 77  SIQSQL 81

Query: 275  334
           
Sbjct: 137  81

Query: 335  353
           
Sbjct: 197  81

[Close]

BLAST of WMU57527 vs. Swiss-Prot
Match: SFH1_YEAST (Chromatin structure-remodeling complex subunit SFH1 OS=Saccharomyces cerevisiae (strain ATCC 204508 / S288c) GN=SFH1 PE=1 SV=1)

HSP 1 Score: 55.5 bits (132), Expect = 4.8e-07
Identity = 32/75 (42.67%), Postives = 43/75 (57.33%), Query Frame = -3


Query: 125 TGEKI-IPIKLDLRVNNTLIKDQFLWDLNNYESDPEEFSRTLCKDLGIEDPEVGPAIAFA 184
           +GE I IPI LD+      IKDQFLW+ N+    PEEF+   CKDL +    +   IA  
Sbjct: 198 SGEAIMIPITLDIEHMGHTIKDQFLWNYNDDSISPEEFASIYCKDLDMTSATLQTQIANI 257

Query: 185 IREQLYEIAVQNVAS 244
           I+EQL ++  +N+A+
Sbjct: 258 IKEQLKDL--ENIAA 270

Query: 245  304
           
Sbjct: 318  270

Query: 305  347
           
Sbjct: 378  270

[Close]

BLAST of WMU57527 vs. Swiss-Prot
Match: SNF5_YEAST (SWI/SNF chromatin-remodeling complex subunit SNF5 OS=Saccharomyces cerevisiae (strain ATCC 204508 / S288c) GN=SNF5 PE=1 SV=3)

HSP 1 Score: 53.1 bits (126), Expect = 2.4e-06
Identity = 29/70 (41.43%), Postives = 44/70 (62.86%), Query Frame = -3


Query: 152 QDMYTGEKI-IPIKLDLRVNNTLIKDQFLWDLNNYESDPEEFSRTLCKDLGIEDPEVGPA 211
           QD   G+ + I IKLD+ V    + DQF WD++N ++ PEEF+ ++C++L +   E   A
Sbjct: 534 QDRLGGDDLRIRIKLDIVVGQNQLIDQFEWDISNSDNCPEEFAESMCQELELPG-EFVTA 593

Query: 212 IAFAIREQLY 271
           IA +IREQ++
Sbjct: 594 IAHSIREQVH 602

Query: 272  331
           
Sbjct: 654  602

Query: 332  359
           
Sbjct: 714  602

[Close]

BLAST of WMU57527 vs. Swiss-Prot
Match: SNF5_TETFL (SWI/SNF-related matrix-associated actin-dependent regulator of chromatin subfamily B member 1 OS=Tetraodon fluviatilis GN=smarcb1 PE=3 SV=1)

HSP 1 Score: 52.4 bits (124), Expect = 4.1e-06
Identity = 23/62 (37.10%), Postives = 34/62 (54.84%), Query Frame = -3


Query: 155 EKIIPIKLDLRVNNTLIKDQFLWDLNNYESDPEEFSRTLCKDLGIEDPEVGPAIAFAIRE 214
           E ++PI+LD+ +    ++D F W++N     PE F+  LC DL +      PAI  AIR+
Sbjct: 172 EVLVPIRLDMEIEGQKLRDAFTWNMNEKLMTPEMFAEILCDDLDLNPLAFVPAIPSAIRQ 231

Query: 215 QL 274
           Q+
Sbjct: 232 QI 233

Query: 275  334
           
Sbjct: 292  233

Query: 335  341
           
Sbjct: 352  233

[Close]

BLAST of WMU57527 vs. NCBI nr
Match: gi|449459804|ref|XP_004147636.1| (PREDICTED: chromatin structure-remodeling complex protein BSH isoform X1 [Cucumis sativus])

HSP 1 Score: 224.6 bits (571), Expect = 9.6e-56
Identity = 110/113 (97.35%), Postives = 111/113 (98.23%), Query Frame = -3


Query: 26  EGQDMYTGEKIIPIKLDLRVNNTLIKDQFLWDLNNYESDPEEFSRTLCKDLGIEDPEVGP 85
           EGQDMYTGEKIIPIKLDLRVNNTLIKDQFLWDLNNYESDPEEFSRTLCKDLGI+DPEVGP
Sbjct: 88  EGQDMYTGEKIIPIKLDLRVNNTLIKDQFLWDLNNYESDPEEFSRTLCKDLGIDDPEVGP 147

Query: 86  AIAFAIREQLYEIAVQNVASAREGRMSKKGRRGFEHVPVSKTGGASVDLVKLF 145
           AIA AIREQLYEIAVQNVASARE RMSKKGRRGFEHVPVSKTGGASVDLVKLF
Sbjct: 148 AIAVAIREQLYEIAVQNVASARESRMSKKGRRGFEHVPVSKTGGASVDLVKLF 200

Query: 146  205
           
Sbjct: 208  200

Query: 206  265
           
Sbjct: 268  200

Query: 266  325
           
Sbjct: 328  200

Query: 326  365
           
Sbjct: 388  200

[Close]

BLAST of WMU57527 vs. NCBI nr
Match: gi|778679191|ref|XP_011651102.1| (PREDICTED: chromatin structure-remodeling complex protein BSH isoform X3 [Cucumis sativus])

HSP 1 Score: 224.6 bits (571), Expect = 9.6e-56
Identity = 110/113 (97.35%), Postives = 111/113 (98.23%), Query Frame = -3


Query: 26  EGQDMYTGEKIIPIKLDLRVNNTLIKDQFLWDLNNYESDPEEFSRTLCKDLGIEDPEVGP 85
           EGQDMYTGEKIIPIKLDLRVNNTLIKDQFLWDLNNYESDPEEFSRTLCKDLGI+DPEVGP
Sbjct: 18  EGQDMYTGEKIIPIKLDLRVNNTLIKDQFLWDLNNYESDPEEFSRTLCKDLGIDDPEVGP 77

Query: 86  AIAFAIREQLYEIAVQNVASAREGRMSKKGRRGFEHVPVSKTGGASVDLVKLF 145
           AIA AIREQLYEIAVQNVASARE RMSKKGRRGFEHVPVSKTGGASVDLVKLF
Sbjct: 78  AIAVAIREQLYEIAVQNVASARESRMSKKGRRGFEHVPVSKTGGASVDLVKLF 130

Query: 146  205
           
Sbjct: 138  130

Query: 206  265
           
Sbjct: 198  130

Query: 266  325
           
Sbjct: 258  130

Query: 326  365
           
Sbjct: 318  130

[Close]

BLAST of WMU57527 vs. NCBI nr
Match: gi|659077056|ref|XP_008439008.1| (PREDICTED: chromatin structure-remodeling complex protein BSH isoform X1 [Cucumis melo])

HSP 1 Score: 223.8 bits (569), Expect = 1.6e-55
Identity = 109/113 (96.46%), Postives = 111/113 (98.23%), Query Frame = -3


Query: 26  EGQDMYTGEKIIPIKLDLRVNNTLIKDQFLWDLNNYESDPEEFSRTLCKDLGIEDPEVGP 85
           EGQDMYTGEKIIPIKLDLRVNNT+IKDQFLWDLNNYESDPEEFSRTLCKDLGI+DPEVGP
Sbjct: 88  EGQDMYTGEKIIPIKLDLRVNNTIIKDQFLWDLNNYESDPEEFSRTLCKDLGIDDPEVGP 147

Query: 86  AIAFAIREQLYEIAVQNVASAREGRMSKKGRRGFEHVPVSKTGGASVDLVKLF 145
           AIA AIREQLYEIAVQNVASARE RMSKKGRRGFEHVPVSKTGGASVDLVKLF
Sbjct: 148 AIAVAIREQLYEIAVQNVASARESRMSKKGRRGFEHVPVSKTGGASVDLVKLF 200

Query: 146  205
           
Sbjct: 208  200

Query: 206  265
           
Sbjct: 268  200

Query: 266  325
           
Sbjct: 328  200

Query: 326  365
           
Sbjct: 388  200

[Close]

BLAST of WMU57527 vs. NCBI nr
Match: gi|778679188|ref|XP_011651101.1| (PREDICTED: chromatin structure-remodeling complex protein BSH isoform X2 [Cucumis sativus])

HSP 1 Score: 222.6 bits (566), Expect = 3.6e-55
Identity = 109/112 (97.32%), Postives = 110/112 (98.21%), Query Frame = -3


Query: 26  GQDMYTGEKIIPIKLDLRVNNTLIKDQFLWDLNNYESDPEEFSRTLCKDLGIEDPEVGPA 85
           GQDMYTGEKIIPIKLDLRVNNTLIKDQFLWDLNNYESDPEEFSRTLCKDLGI+DPEVGPA
Sbjct: 47  GQDMYTGEKIIPIKLDLRVNNTLIKDQFLWDLNNYESDPEEFSRTLCKDLGIDDPEVGPA 106

Query: 86  IAFAIREQLYEIAVQNVASAREGRMSKKGRRGFEHVPVSKTGGASVDLVKLF 145
           IA AIREQLYEIAVQNVASARE RMSKKGRRGFEHVPVSKTGGASVDLVKLF
Sbjct: 107 IAVAIREQLYEIAVQNVASARESRMSKKGRRGFEHVPVSKTGGASVDLVKLF 158

Query: 146  205
           
Sbjct: 167  158

Query: 206  265
           
Sbjct: 227  158

Query: 266  325
           
Sbjct: 287  158

Query: 326  362
           
Sbjct: 347  158

[Close]

BLAST of WMU57527 vs. NCBI nr
Match: gi|659077059|ref|XP_008439009.1| (PREDICTED: chromatin structure-remodeling complex protein BSH isoform X2 [Cucumis melo])

HSP 1 Score: 221.9 bits (564), Expect = 6.2e-55
Identity = 108/112 (96.43%), Postives = 110/112 (98.21%), Query Frame = -3


Query: 26  GQDMYTGEKIIPIKLDLRVNNTLIKDQFLWDLNNYESDPEEFSRTLCKDLGIEDPEVGPA 85
           GQDMYTGEKIIPIKLDLRVNNT+IKDQFLWDLNNYESDPEEFSRTLCKDLGI+DPEVGPA
Sbjct: 47  GQDMYTGEKIIPIKLDLRVNNTIIKDQFLWDLNNYESDPEEFSRTLCKDLGIDDPEVGPA 106

Query: 86  IAFAIREQLYEIAVQNVASAREGRMSKKGRRGFEHVPVSKTGGASVDLVKLF 145
           IA AIREQLYEIAVQNVASARE RMSKKGRRGFEHVPVSKTGGASVDLVKLF
Sbjct: 107 IAVAIREQLYEIAVQNVASARESRMSKKGRRGFEHVPVSKTGGASVDLVKLF 158

Query: 146  205
           
Sbjct: 167  158

Query: 206  265
           
Sbjct: 227  158

Query: 266  325
           
Sbjct: 287  158

Query: 326  362
           
Sbjct: 347  158

The following BLAST results are available for this feature:

BLAST of WMU57527 vs. TAIR10


Match Name	E-value	Identity	Description
AT3G17590.2	4.4e-51	83.19	transcription regulatory protein SNF5, putative (BSH)	[more]

BLAST of WMU57527 vs. Swiss-Prot


Match Name	E-value	Identity	Description
BSH_ARATH	7.9e-50	83.19	Chromatin structure-remodeling complex protein BSH OS=Arabidopsis thaliana GN=BS...	[more]
SFH1_YEAST	4.8e-07	42.67	Chromatin structure-remodeling complex subunit SFH1 OS=Saccharomyces cerevisiae ...	[more]
SNF5_YEAST	2.4e-06	41.43	SWI/SNF chromatin-remodeling complex subunit SNF5 OS=Saccharomyces cerevisiae (s...	[more]
SNF5_TETFL	4.1e-06	37.10	SWI/SNF-related matrix-associated actin-dependent regulator of chromatin subfami...	[more]

BLAST of WMU57527 vs. NCBI nr


Match Name	E-value	Identity	Description
gi\|449459804\|ref\|XP_004147636.1\|	9.6e-56	97.35	PREDICTED: chromatin structure-remodeling complex protein BSH isoform X1 [Cucumi...	[more]
gi\|778679191\|ref\|XP_011651102.1\|	9.6e-56	97.35	PREDICTED: chromatin structure-remodeling complex protein BSH isoform X3 [Cucumi...	[more]
gi\|659077056\|ref\|XP_008439008.1\|	1.6e-55	96.46	PREDICTED: chromatin structure-remodeling complex protein BSH isoform X1 [Cucumi...	[more]
gi\|778679188\|ref\|XP_011651101.1\|	3.6e-55	97.32	PREDICTED: chromatin structure-remodeling complex protein BSH isoform X2 [Cucumi...	[more]
gi\|659077059\|ref\|XP_008439009.1\|	6.2e-55	96.43	PREDICTED: chromatin structure-remodeling complex protein BSH isoform X2 [Cucumi...	[more]

Annotated Terms

The following terms have been associated with this transcribed_cluster:

Vocabulary: **INTERPRO**
Term	Definition
IPR006939	SNF5

Vocabulary: **Cellular Component**
Term	Definition
GO:0000228	nuclear chromosome

Vocabulary: **Biological Process**
Term	Definition
GO:0006338	chromatin remodeling

GO Annotation

GO Assignments

This transcribed_cluster is annotated with the following GO terms.

Category	Term Accession	Term Name
biological_process	GO:0006338	chromatin remodeling
cellular_component	GO:0000228	nuclear chromosome

Relationships

This transcribed_cluster is associated with the following gene feature(s):


Feature Name	Unique Name	Type
Cla021836	Cla021836	gene

The following EST feature(s) are a part of this transcribed_cluster:


Feature Name	Unique Name	Type
S1_0147176	S1_0147176	EST

InterPro

Analysis Name: InterPro Annotations of watermelon unigene v2
Date Performed: 2016-11-16


IPR Term	IPR Description	Source	Source Term	Source Description	Alignment
IPR006939	SNF5/SMARCB1/INI1	PANTHER	PTHR10019	SNF5	coord: 5..105 score: 8.8
IPR006939	SNF5/SMARCB1/INI1	PFAM	PF04855	SNF5	coord: 10..74 score: 9.0