Cla021548 (gene) Watermelon (97103) v1 | Cucurbit Genomics Database (CuGenDB)

Overview


Name	Cla021548
Type	gene
Organism	Citrullus. lanatus (Watermelon (97103) v1)
Description	Unknown Protein (AHRD V1)
Location	Chr5 : 4025316 .. 4025609 (+)

Genome Viewer

Gene Expression

Sequences

The following sequences are available for this feature:

Gene sequence (with intron)

Legend: CDS

Hold the cursor over a type above to highlight its positions in the sequence below.

ATGGGCGATGCAGAGAGAAAAAGCCAGTGCCAAGCGCCGACACGGCTGCAGAGCCAGGCTCCGGCATCGATTGAGATAAAGCGGGCGCCGAATTGGAACATGGCCATACCCTTGTTATCCCCTCTTGTATCACCTTCGTCTTGTGGGAATCCAGGGCAAGAGGAAGCCTTGTTGATGGCTGAGAATAAAGCGAGGGAGGAAGCCAAAGGGCTAAGCTTTACCAAATGGCAGCACCCTGCGGCTCCATTTTATTATGGGCCAGTCCCAAGGGCCACCCCCTTTGTGCCCGTGTGA

mRNA sequence

ATGGGCGATGCAGAGAGAAAAAGCCAGTGCCAAGCGCCGACACGGCTGCAGAGCCAGGCTCCGGCATCGATTGAGATAAAGCGGGCGCCGAATTGGAACATGGCCATACCCTTGTTATCCCCTCTTGTATCACCTTCGTCTTGTGGGAATCCAGGGCAAGAGGAAGCCTTGTTGATGGCTGAGAATAAAGCGAGGGAGGAAGCCAAAGGGCTAAGCTTTACCAAATGGCAGCACCCTGCGGCTCCATTTTATTATGGGCCAGTCCCAAGGGCCACCCCCTTTGTGCCCGTGTGA

Coding sequence (CDS)

ATGGGCGATGCAGAGAGAAAAAGCCAGTGCCAAGCGCCGACACGGCTGCAGAGCCAGGCTCCGGCATCGATTGAGATAAAGCGGGCGCCGAATTGGAACATGGCCATACCCTTGTTATCCCCTCTTGTATCACCTTCGTCTTGTGGGAATCCAGGGCAAGAGGAAGCCTTGTTGATGGCTGAGAATAAAGCGAGGGAGGAAGCCAAAGGGCTAAGCTTTACCAAATGGCAGCACCCTGCGGCTCCATTTTATTATGGGCCAGTCCCAAGGGCCACCCCCTTTGTGCCCGTGTGA

Protein sequence

MGDAERKSQCQAPTRLQSQAPASIEIKRAPNWNMAIPLLSPLVSPSSCGNPGQEEALLMAENKAREEAKGLSFTKWQHPAAPFYYGPVPRATPFVPV

Homology

[Close]

BLAST of Cla021548 vs. Swiss-Prot
Match: Y4445_ARATH (Uncharacterized protein At4g14450, chloroplastic OS=Arabidopsis thaliana GN=At4g14450 PE=2 SV=1)

HSP 1 Score: 55.5 bits (132), Expect = 3.9e-07
Identity = 36/92 (39.13%), Postives = 48/92 (52.17%), Query Frame = 1


Query: 14  TRLQSQAPA-SIEIKRAPNWNMAIPLLSPLVSPSSCGN-------PGQEEALLMAENKAR 73
           ++LQ +AP+  I+     NWN+AIPLLSPL +PS   +       P Q +  +  E + +
Sbjct: 38  SQLQRRAPSLMIKPTSFSNWNVAIPLLSPL-APSLTSSFDQSHVPPPQNKTEIPVEEEVK 97

Query: 74  EEAKGLSFTKWQHPAAPFYYGPVPRATPFVPV 98
              K   F KWQHPA+PF Y P     PF+ V
Sbjct: 98  ---KTPVFKKWQHPASPFCYEPTTFVPPFIQV 125

[Close]

BLAST of Cla021548 vs. TrEMBL
Match: A0A0A0L8D3_CUCSA (Uncharacterized protein OS=Cucumis sativus GN=Csa_3G141830 PE=4 SV=1)

HSP 1 Score: 158.3 bits (399), Expect = 4.7e-36
Identity = 79/98 (80.61%), Postives = 83/98 (84.69%), Query Frame = 1


Query: 1  MGDAERKSQCQ-APTRLQSQAPASIEIKRAPNWNMAIPLLSPLVSPSSCGNPGQEEALLM 60
          M DAERK+    APTRLQSQAPASIEIKRA NWN+AIPLLSPLVSPSSCGN   E+ L M
Sbjct: 1  MSDAERKTATTVAPTRLQSQAPASIEIKRALNWNVAIPLLSPLVSPSSCGNSAPEKMLSM 60

Query: 61 AENKAREEAKGLSFTKWQHPAAPFYYGPVPRATPFVPV 98
          AEN AREE KGL+FTKWQHPAAPFYY PVPRA PFVPV
Sbjct: 61 AENNAREETKGLTFTKWQHPAAPFYYEPVPRANPFVPV 98

[Close]

BLAST of Cla021548 vs. TrEMBL
Match: I1NI17_SOYBN (Uncharacterized protein OS=Glycine max GN=GLYMA_20G202600 PE=4 SV=1)

HSP 1 Score: 86.3 bits (212), Expect = 2.3e-14
Identity = 48/98 (48.98%), Postives = 59/98 (60.20%), Query Frame = 1


Query: 1  MGDAERKSQCQAPTRLQSQAPASIEIKRAPNWNMAIPLLSPLVSPSSCGNPGQEEALLMA 60
          M + +  +  + P+RLQ +AP+S++I RA  WN+AIPLLSPL S     +P   E     
Sbjct: 1  MSNPQTNNNRRQPSRLQRRAPSSLQINRAVEWNVAIPLLSPLAS-----SPTPIELKPPQ 60

Query: 61 ENKAREEAK-GLSFTKWQHPAAPFYYGPVPRATPFVPV 98
          E   RE  K  LSF KWQHPAAPF Y P P   PFVPV
Sbjct: 61 EPPQREPEKVTLSFKKWQHPAAPFCYEPAPMVPPFVPV 93

[Close]

BLAST of Cla021548 vs. TrEMBL
Match: I1LCD2_SOYBN (Uncharacterized protein OS=Glycine max GN=GLYMA_10G188200 PE=4 SV=1)

HSP 1 Score: 85.1 bits (209), Expect = 5.1e-14
Identity = 47/98 (47.96%), Postives = 58/98 (59.18%), Query Frame = 1


Query: 1  MGDAERKSQCQAPTRLQSQAPASIEIKRAPNWNMAIPLLSPLVSPSSCGNPGQEEALLMA 60
          M + +  +    P+RLQ +AP+S++I RA  WN+AIPLLSPL S     +P   E     
Sbjct: 1  MSNPQTNNNRHQPSRLQRRAPSSLQINRAVEWNVAIPLLSPLAS-----SPPPMELKPPQ 60

Query: 61 ENKAREEAK-GLSFTKWQHPAAPFYYGPVPRATPFVPV 98
          E   RE  K  +SF KWQHPAAPF Y P P   PFVPV
Sbjct: 61 EPPQREAEKVTVSFKKWQHPAAPFCYEPAPMVPPFVPV 93

[Close]

BLAST of Cla021548 vs. TrEMBL
Match: M5XT20_PRUPE (Uncharacterized protein OS=Prunus persica GN=PRUPE_ppa013660mg PE=4 SV=1)

HSP 1 Score: 82.4 bits (202), Expect = 3.3e-13
Identity = 49/110 (44.55%), Postives = 65/110 (59.09%), Query Frame = 1


Query: 1   MGDAERKSQC---QAPTRLQSQAP--ASIEIKRAPNWNMAIPLLSPLVSPS----SCGNP 60
           M DA R S     + P+RLQ +AP  +S++I R P+WN+AIPLLSPLVSP     +  + 
Sbjct: 1   MADAPRPSSTINRRQPSRLQRRAPPPSSLQINRVPDWNIAIPLLSPLVSPDCPIDTTKSR 60

Query: 61  GQEEALLMAEN----KAREEAKGLSFTKWQHPAAPFYYGPVPRATPFVPV 98
            Q +   M  +    +A + A  + F KWQHPAAPF Y P P  + FVPV
Sbjct: 61  DQHQQKEMPRHHQGAEAEKSAPAMVFKKWQHPAAPFCYEPAPFVSAFVPV 110

[Close]

BLAST of Cla021548 vs. TrEMBL
Match: V7BGS6_PHAVU (Uncharacterized protein OS=Phaseolus vulgaris GN=PHAVU_007G129100g PE=4 SV=1)

HSP 1 Score: 80.5 bits (197), Expect = 1.3e-12
Identity = 45/98 (45.92%), Postives = 58/98 (59.18%), Query Frame = 1


Query: 1   MGDAERKSQCQAPTRLQSQAPASIEIKRAPNWNMAIPLLSPLVSPSSCGNPGQEEALLMA 60
           M + +  +    P+RLQ +AP+S++I R+ +WN+AIPLLSPL S     +P   E     
Sbjct: 76  MSNPQTNNNRHQPSRLQRRAPSSLQISRSLDWNVAIPLLSPLAS-----SPPPLELKPPQ 135

Query: 61  ENKAREEAK-GLSFTKWQHPAAPFYYGPVPRATPFVPV 98
           E   RE  K  +SF KWQHPAAPF Y P     PFVPV
Sbjct: 136 EPPQREAEKVSVSFKKWQHPAAPFCYEPAAIVPPFVPV 168

[Close]

BLAST of Cla021548 vs. NCBI nr
Match: gi|700201754|gb|KGN56887.1| (hypothetical protein Csa_3G141830 [Cucumis sativus])

HSP 1 Score: 158.3 bits (399), Expect = 6.8e-36
Identity = 79/98 (80.61%), Postives = 83/98 (84.69%), Query Frame = 1


Query: 1  MGDAERKSQCQ-APTRLQSQAPASIEIKRAPNWNMAIPLLSPLVSPSSCGNPGQEEALLM 60
          M DAERK+    APTRLQSQAPASIEIKRA NWN+AIPLLSPLVSPSSCGN   E+ L M
Sbjct: 1  MSDAERKTATTVAPTRLQSQAPASIEIKRALNWNVAIPLLSPLVSPSSCGNSAPEKMLSM 60

Query: 61 AENKAREEAKGLSFTKWQHPAAPFYYGPVPRATPFVPV 98
          AEN AREE KGL+FTKWQHPAAPFYY PVPRA PFVPV
Sbjct: 61 AENNAREETKGLTFTKWQHPAAPFYYEPVPRANPFVPV 98

[Close]

BLAST of Cla021548 vs. NCBI nr
Match: gi|571569255|ref|XP_006606361.1| (PREDICTED: uncharacterized protein At4g14450, chloroplastic-like [Glycine max])

HSP 1 Score: 86.3 bits (212), Expect = 3.3e-14
Identity = 48/98 (48.98%), Postives = 59/98 (60.20%), Query Frame = 1


Query: 1  MGDAERKSQCQAPTRLQSQAPASIEIKRAPNWNMAIPLLSPLVSPSSCGNPGQEEALLMA 60
          M + +  +  + P+RLQ +AP+S++I RA  WN+AIPLLSPL S     +P   E     
Sbjct: 1  MSNPQTNNNRRQPSRLQRRAPSSLQINRAVEWNVAIPLLSPLAS-----SPTPIELKPPQ 60

Query: 61 ENKAREEAK-GLSFTKWQHPAAPFYYGPVPRATPFVPV 98
          E   RE  K  LSF KWQHPAAPF Y P P   PFVPV
Sbjct: 61 EPPQREPEKVTLSFKKWQHPAAPFCYEPAPMVPPFVPV 93

[Close]

BLAST of Cla021548 vs. NCBI nr
Match: gi|1012240624|ref|XP_015940792.1| (PREDICTED: uncharacterized protein At4g14450, chloroplastic-like [Arachis duranensis])

HSP 1 Score: 85.5 bits (210), Expect = 5.6e-14
Identity = 42/89 (47.19%), Postives = 57/89 (64.04%), Query Frame = 1


Query: 13  PTRLQSQAPASIEIKRAPNWNMAIPLLSPLVSPSSCGNPG----QEEALLMAENKAREEA 72
           P+RLQ +AP+S++I RA +WN+AIPLLSPL S  +   P     Q+      ++ A ++A
Sbjct: 15  PSRLQRRAPSSLQINRAVDWNVAIPLLSPLTSSPTTQQPDHPKPQDPPQRHHDSPAEKKA 74

Query: 73  KGLSFTKWQHPAAPFYYGPVPRATPFVPV 98
              +F KWQHPAAPF+Y P P    FVPV
Sbjct: 75  AAAAFMKWQHPAAPFFYEPAPGVPSFVPV 103

[Close]

BLAST of Cla021548 vs. NCBI nr
Match: gi|571483637|ref|XP_006589298.1| (PREDICTED: uncharacterized protein At4g14450, chloroplastic-like [Glycine max])

HSP 1 Score: 85.1 bits (209), Expect = 7.3e-14
Identity = 47/98 (47.96%), Postives = 58/98 (59.18%), Query Frame = 1


Query: 1  MGDAERKSQCQAPTRLQSQAPASIEIKRAPNWNMAIPLLSPLVSPSSCGNPGQEEALLMA 60
          M + +  +    P+RLQ +AP+S++I RA  WN+AIPLLSPL S     +P   E     
Sbjct: 1  MSNPQTNNNRHQPSRLQRRAPSSLQINRAVEWNVAIPLLSPLAS-----SPPPMELKPPQ 60

Query: 61 ENKAREEAK-GLSFTKWQHPAAPFYYGPVPRATPFVPV 98
          E   RE  K  +SF KWQHPAAPF Y P P   PFVPV
Sbjct: 61 EPPQREAEKVTVSFKKWQHPAAPFCYEPAPMVPPFVPV 93

[Close]

BLAST of Cla021548 vs. NCBI nr
Match: gi|1009141024|ref|XP_015887969.1| (PREDICTED: uncharacterized protein At4g14450, chloroplastic [Ziziphus jujuba])

HSP 1 Score: 84.7 bits (208), Expect = 9.5e-14
Identity = 49/102 (48.04%), Postives = 61/102 (59.80%), Query Frame = 1


Query: 10  CQAPTRLQSQAPASIEIKRAPNWNMAIPLLSPLVSPSSCGNPGQEEALLMAENKAREE-- 69
           C+ P+RLQ +APAS++I    +WN+AIPLLSPLVSP+S   P   E  +  E K+REE  
Sbjct: 14  CRPPSRLQRRAPASLQISPVSDWNIAIPLLSPLVSPTS---PKAIERTV--EIKSREEHR 73

Query: 70  ------------AKGLSFTKWQHPAAPFYYGPVPRATPFVPV 98
                       A  ++F KWQHPAAPF Y   P   PFVPV
Sbjct: 74  HHHQSAEPEKPAATAVAFKKWQHPAAPFCYDNAPLIRPFVPV 110

The following BLAST results are available for this feature:

BLAST of Cla021548 vs. Swiss-Prot


Match Name	E-value	Identity	Description
Y4445_ARATH	3.9e-07	39.13	Uncharacterized protein At4g14450, chloroplastic OS=Arabidopsis thaliana GN=At4g...	[more]

BLAST of Cla021548 vs. TrEMBL


Match Name	E-value	Identity	Description
A0A0A0L8D3_CUCSA	4.7e-36	80.61	Uncharacterized protein OS=Cucumis sativus GN=Csa_3G141830 PE=4 SV=1	[more]
I1NI17_SOYBN	2.3e-14	48.98	Uncharacterized protein OS=Glycine max GN=GLYMA_20G202600 PE=4 SV=1	[more]
I1LCD2_SOYBN	5.1e-14	47.96	Uncharacterized protein OS=Glycine max GN=GLYMA_10G188200 PE=4 SV=1	[more]
M5XT20_PRUPE	3.3e-13	44.55	Uncharacterized protein OS=Prunus persica GN=PRUPE_ppa013660mg PE=4 SV=1	[more]
V7BGS6_PHAVU	1.3e-12	45.92	Uncharacterized protein OS=Phaseolus vulgaris GN=PHAVU_007G129100g PE=4 SV=1	[more]

BLAST of Cla021548 vs. NCBI nr


Match Name	E-value	Identity	Description
gi\|700201754\|gb\|KGN56887.1\|	6.8e-36	80.61	hypothetical protein Csa_3G141830 [Cucumis sativus]	[more]
gi\|571569255\|ref\|XP_006606361.1\|	3.3e-14	48.98	PREDICTED: uncharacterized protein At4g14450, chloroplastic-like [Glycine max]	[more]
gi\|1012240624\|ref\|XP_015940792.1\|	5.6e-14	47.19	PREDICTED: uncharacterized protein At4g14450, chloroplastic-like [Arachis durane...	[more]
gi\|571483637\|ref\|XP_006589298.1\|	7.3e-14	47.96	PREDICTED: uncharacterized protein At4g14450, chloroplastic-like [Glycine max]	[more]
gi\|1009141024\|ref\|XP_015887969.1\|	9.5e-14	48.04	PREDICTED: uncharacterized protein At4g14450, chloroplastic [Ziziphus jujuba]	[more]

Annotated Terms

The following terms have been associated with this gene:

Vocabulary: **INTERPRO**
Term	Definition

GO Annotation

GO Assignments

This gene is annotated with the following GO terms.

Category	Term Accession	Term Name
biological_process	GO:0008150	biological_process
cellular_component	GO:0005575	cellular_component
molecular_function	GO:0003674	molecular_function
molecular_function	GO:0003677	DNA binding

Unigene

This gene is associated with the following unigenes:


Unigene Name	Analysis Name	Sequence type in Unigene
WMU10477	watermelon EST collection version 2.0	transcribed_cluster
WMU17596	watermelon unigene v2 vs TrEMBL	transcribed_cluster
WMU70029	watermelon EST collection version 2.0	transcribed_cluster

Relationships

The following mRNA feature(s) are a part of this gene:


Feature Name	Unique Name	Type
Cla021548	Cla021548.1	mRNA

The following transcribed_cluster feature(s) are associated with this gene:


Feature Name	Unique Name	Type
WMU17596	WMU17596	transcribed_cluster
WMU10477	WMU10477	transcribed_cluster
WMU70029	WMU70029	transcribed_cluster

InterPro

Analysis Name: InterPro Annotations of watermelon (97103)
Date Performed: 2016-09-28


IPR Term	IPR Description	Source	Source Term	Source Description	Alignment
None	No IPR available	PANTHER	PTHR33912	FAMILY NOT NAMED	coord: 13..97 score: 2.9
None	No IPR available	PANTHER	PTHR33912:SF2	SUBFAMILY NOT NAMED	coord: 13..97 score: 2.9

Synteny

The following gene(s) are orthologous to this gene:


Gene	Orthologue	Organism	Block
Cla021548	Cla97C05G085400	Watermelon (97103) v2	wmwmbB206
Cla021548	Csa3G141830	Cucumber (Chinese Long) v2	cuwmB233
Cla021548	MELO3C006449	Melon (DHL92) v3.5.1	mewmB461
Cla021548	ClCG05G004480	Watermelon (Charleston Gray)	wcgwmB286
Cla021548	CSPI03G12250	Wild cucumber (PI 183967)	cpiwmB231
Cla021548	Cucsa.255150	Cucumber (Gy14) v1	cgywmB479
Cla021548	CmaCh14G017950	Cucurbita maxima (Rimu)	cmawmB242
Cla021548	CmoCh14G018330	Cucurbita moschata (Rifu)	cmowmB231
Cla021548	Lsi05G016980	Bottle gourd (USVL1VR-Ls)	lsiwmB365
Cla021548	Cp4.1LG03g09950	Cucurbita pepo (Zucchini)	cpewmB613
Cla021548	Carg16573	Silver-seed gourd	carwmB0223
Cla021548	Carg10953	Silver-seed gourd	carwmB1075
Cla021548	Carg10077	Silver-seed gourd	carwmB0218
Cla021548	CsaV3_3G012380	Cucumber (Chinese Long) v3	cucwmB239
Cla021548	Bhi12G001455	Wax gourd	wgowmB062
Cla021548	BhiUN533G6	Wax gourd	wgowmB291

The following gene(s) are paralogous to this gene:

None

The following block(s) are covering this gene:


Gene	Organism	Block
Cla021548	Cucumber (Chinese Long) v3	cucwmB136
Cla021548	Watermelon (97103) v2	wmwmbB217
Cla021548	Watermelon (97103) v2	wmwmbB221
Cla021548	Wax gourd	wgowmB270
Cla021548	Watermelon (97103) v1	wmwmB099
Cla021548	Watermelon (97103) v1	wmwmB138
Cla021548	Cucumber (Gy14) v1	cgywmB690
Cla021548	Cucurbita maxima (Rimu)	cmawmB001
Cla021548	Cucurbita maxima (Rimu)	cmawmB344
Cla021548	Cucurbita maxima (Rimu)	cmawmB495
Cla021548	Cucurbita maxima (Rimu)	cmawmB798
Cla021548	Cucurbita maxima (Rimu)	cmawmB869
Cla021548	Cucurbita moschata (Rifu)	cmowmB340
Cla021548	Cucurbita moschata (Rifu)	cmowmB489
Cla021548	Cucurbita moschata (Rifu)	cmowmB793
Cla021548	Cucurbita moschata (Rifu)	cmowmB856
Cla021548	Melon (DHL92) v3.5.1	mewmB413
Cla021548	Watermelon (Charleston Gray)	wcgwmB331
Cla021548	Watermelon (Charleston Gray)	wcgwmB382
Cla021548	Cucumber (Chinese Long) v2	cuwmB122
Cla021548	Cucurbita pepo (Zucchini)	cpewmB151
Cla021548	Cucurbita pepo (Zucchini)	cpewmB262
Cla021548	Cucurbita pepo (Zucchini)	cpewmB331
Cla021548	Cucurbita pepo (Zucchini)	cpewmB706
Cla021548	Cucurbita pepo (Zucchini)	cpewmB845
Cla021548	Bottle gourd (USVL1VR-Ls)	lsiwmB017
Cla021548	Bottle gourd (USVL1VR-Ls)	lsiwmB367
Cla021548	Cucumber (Gy14) v2	cgybwmB117
Cla021548	Cucumber (Gy14) v2	cgybwmB217
Cla021548	Melon (DHL92) v3.6.1	medwmB404
Cla021548	Melon (DHL92) v3.6.1	medwmB447
Cla021548	Silver-seed gourd	carwmB0752
Cla021548	Silver-seed gourd	carwmB0782
Cla021548	Silver-seed gourd	carwmB0961