Lsi05G016980 (gene) Bottle gourd (USVL1VR-Ls)
The following sequences are available for this feature:
Legend: CDS Hold the cursor over a type above to highlight its positions in the sequence below.ATGGCCGATGCAGAGAGAAAAAGCAGCGCCGTTACCCAGAGGCAAGCGCCGACACGGCTGCAGAGCCAGGCTCCGGCATCGATTGAGATAAAGCGGGCGCAGAATTGGAACGTGGCTATACCGTTGTTATCCCCTCTTGTGTCACCTTCGTCTTGTGGGAATTCAGGGCAAGAAGAAGCGTTGTTGATGGCTGAGAATAAGGCGAGGGAGGAAGCCAAAGGGCTAGCCTTTACCAAAGGGCAGCACCCTGCGGCTCCATTTTATTATGAGCCAGTCCCAAGGGCCACACCCTTTGTGCCCGTGTGA ATGGCCGATGCAGAGAGAAAAAGCAGCGCCGTTACCCAGAGGCAAGCGCCGACACGGCTGCAGAGCCAGGCTCCGGCATCGATTGAGATAAAGCGGGCGCAGAATTGGAACGTGGCTATACCGTTGTTATCCCCTCTTGTGTCACCTTCGTCTTGTGGGAATTCAGGGCAAGAAGAAGCGTTGTTGATGGCTGAGAATAAGGCGAGGGAGGAAGCCAAAGGGCTAGCCTTTACCAAAGGGCAGCACCCTGCGGCTCCATTTTATTATGAGCCAGTCCCAAGGGCCACACCCTTTGTGCCCGTGTGA ATGGCCGATGCAGAGAGAAAAAGCAGCGCCGTTACCCAGAGGCAAGCGCCGACACGGCTGCAGAGCCAGGCTCCGGCATCGATTGAGATAAAGCGGGCGCAGAATTGGAACGTGGCTATACCGTTGTTATCCCCTCTTGTGTCACCTTCGTCTTGTGGGAATTCAGGGCAAGAAGAAGCGTTGTTGATGGCTGAGAATAAGGCGAGGGAGGAAGCCAAAGGGCTAGCCTTTACCAAAGGGCAGCACCCTGCGGCTCCATTTTATTATGAGCCAGTCCCAAGGGCCACACCCTTTGTGCCCGTGTGA MADAERKSSAVTQRQAPTRLQSQAPASIEIKRAQNWNVAIPLLSPLVSPSSCGNSGQEEALLMAENKAREEAKGLAFTKGQHPAAPFYYEPVPRATPFVPV
BLAST of Lsi05G016980 vs. Swiss-Prot
Match: Y4445_ARATH (Uncharacterized protein At4g14450, chloroplastic OS=Arabidopsis thaliana GN=At4g14450 PE=2 SV=1) HSP 1 Score: 53.9 bits (128), Expect = 1.2e-06 Identity = 40/100 (40.00%), Postives = 53/100 (53.00%), Query Frame = 1
BLAST of Lsi05G016980 vs. TrEMBL
Match: A0A0A0L8D3_CUCSA (Uncharacterized protein OS=Cucumis sativus GN=Csa_3G141830 PE=4 SV=1) HSP 1 Score: 154.5 bits (389), Expect = 7.1e-35 Identity = 81/101 (80.20%), Postives = 85/101 (84.16%), Query Frame = 1
BLAST of Lsi05G016980 vs. TrEMBL
Match: M5XT20_PRUPE (Uncharacterized protein OS=Prunus persica GN=PRUPE_ppa013660mg PE=4 SV=1) HSP 1 Score: 82.0 bits (201), Expect = 4.5e-13 Identity = 52/111 (46.85%), Postives = 69/111 (62.16%), Query Frame = 1
BLAST of Lsi05G016980 vs. TrEMBL
Match: I1NI17_SOYBN (Uncharacterized protein OS=Glycine max GN=GLYMA_20G202600 PE=4 SV=1) HSP 1 Score: 77.0 bits (188), Expect = 1.4e-11 Identity = 47/89 (52.81%), Postives = 55/89 (61.80%), Query Frame = 1
BLAST of Lsi05G016980 vs. TrEMBL
Match: A0A0K9RTY8_SPIOL (Uncharacterized protein OS=Spinacia oleracea GN=SOVF_028650 PE=4 SV=1) HSP 1 Score: 75.9 bits (185), Expect = 3.2e-11 Identity = 42/92 (45.65%), Postives = 62/92 (67.39%), Query Frame = 1
BLAST of Lsi05G016980 vs. TrEMBL
Match: I1LCD2_SOYBN (Uncharacterized protein OS=Glycine max GN=GLYMA_10G188200 PE=4 SV=1) HSP 1 Score: 75.5 bits (184), Expect = 4.2e-11 Identity = 46/89 (51.69%), Postives = 54/89 (60.67%), Query Frame = 1
BLAST of Lsi05G016980 vs. TAIR10
Match: AT1G04330.1 (AT1G04330.1 unknown protein) HSP 1 Score: 56.2 bits (134), Expect = 1.3e-08 Identity = 41/102 (40.20%), Postives = 56/102 (54.90%), Query Frame = 1
BLAST of Lsi05G016980 vs. TAIR10
Match: AT3G23170.1 (AT3G23170.1 unknown protein) HSP 1 Score: 55.5 bits (132), Expect = 2.3e-08 Identity = 40/92 (43.48%), Postives = 50/92 (54.35%), Query Frame = 1
BLAST of Lsi05G016980 vs. TAIR10
Match: AT4G14450.1 (AT4G14450.1 unknown protein) HSP 1 Score: 53.9 bits (128), Expect = 6.6e-08 Identity = 40/100 (40.00%), Postives = 53/100 (53.00%), Query Frame = 1
BLAST of Lsi05G016980 vs. NCBI nr
Match: gi|700201754|gb|KGN56887.1| (hypothetical protein Csa_3G141830 [Cucumis sativus]) HSP 1 Score: 154.5 bits (389), Expect = 1.0e-34 Identity = 81/101 (80.20%), Postives = 85/101 (84.16%), Query Frame = 1
BLAST of Lsi05G016980 vs. NCBI nr
Match: gi|596192864|ref|XP_007223524.1| (hypothetical protein PRUPE_ppa013660mg [Prunus persica]) HSP 1 Score: 82.0 bits (201), Expect = 6.4e-13 Identity = 52/111 (46.85%), Postives = 69/111 (62.16%), Query Frame = 1
BLAST of Lsi05G016980 vs. NCBI nr
Match: gi|645235692|ref|XP_008224388.1| (PREDICTED: uncharacterized protein At4g14450, chloroplastic-like [Prunus mume]) HSP 1 Score: 80.9 bits (198), Expect = 1.4e-12 Identity = 53/111 (47.75%), Postives = 69/111 (62.16%), Query Frame = 1
BLAST of Lsi05G016980 vs. NCBI nr
Match: gi|697170557|ref|XP_009594196.1| (PREDICTED: uncharacterized protein At4g14450, chloroplastic-like [Nicotiana tomentosiformis]) HSP 1 Score: 80.5 bits (197), Expect = 1.9e-12 Identity = 52/108 (48.15%), Postives = 69/108 (63.89%), Query Frame = 1
BLAST of Lsi05G016980 vs. NCBI nr
Match: gi|1009141024|ref|XP_015887969.1| (PREDICTED: uncharacterized protein At4g14450, chloroplastic [Ziziphus jujuba]) HSP 1 Score: 79.7 bits (195), Expect = 3.2e-12 Identity = 51/115 (44.35%), Postives = 65/115 (56.52%), Query Frame = 1
The following BLAST results are available for this feature:
The following terms have been associated with this gene:
GO Assignments
This gene is annotated with the following GO terms.
The following mRNA feature(s) are a part of this gene:
Analysis Name: InterPro Annotations of Lagenaria siceraria
Date Performed: 2017-09-18
The following gene(s) are orthologous to this gene:
The following gene(s) are paralogous to this gene: None The following block(s) are covering this gene: |