Lsi05G016980 (gene) Bottle gourd (USVL1VR-Ls)

NameLsi05G016980
Typegene
OrganismLagenaria siceraria (Bottle gourd (USVL1VR-Ls))
DescriptionCoffea canephora DH200=94 genomic scaffold, scaffold_3
Locationchr05 : 24547833 .. 24548138 (-)
The following sequences are available for this feature:

Gene sequence (with intron)

Legend: CDS
Hold the cursor over a type above to highlight its positions in the sequence below.
ATGGCCGATGCAGAGAGAAAAAGCAGCGCCGTTACCCAGAGGCAAGCGCCGACACGGCTGCAGAGCCAGGCTCCGGCATCGATTGAGATAAAGCGGGCGCAGAATTGGAACGTGGCTATACCGTTGTTATCCCCTCTTGTGTCACCTTCGTCTTGTGGGAATTCAGGGCAAGAAGAAGCGTTGTTGATGGCTGAGAATAAGGCGAGGGAGGAAGCCAAAGGGCTAGCCTTTACCAAAGGGCAGCACCCTGCGGCTCCATTTTATTATGAGCCAGTCCCAAGGGCCACACCCTTTGTGCCCGTGTGA

mRNA sequence

ATGGCCGATGCAGAGAGAAAAAGCAGCGCCGTTACCCAGAGGCAAGCGCCGACACGGCTGCAGAGCCAGGCTCCGGCATCGATTGAGATAAAGCGGGCGCAGAATTGGAACGTGGCTATACCGTTGTTATCCCCTCTTGTGTCACCTTCGTCTTGTGGGAATTCAGGGCAAGAAGAAGCGTTGTTGATGGCTGAGAATAAGGCGAGGGAGGAAGCCAAAGGGCTAGCCTTTACCAAAGGGCAGCACCCTGCGGCTCCATTTTATTATGAGCCAGTCCCAAGGGCCACACCCTTTGTGCCCGTGTGA

Coding sequence (CDS)

ATGGCCGATGCAGAGAGAAAAAGCAGCGCCGTTACCCAGAGGCAAGCGCCGACACGGCTGCAGAGCCAGGCTCCGGCATCGATTGAGATAAAGCGGGCGCAGAATTGGAACGTGGCTATACCGTTGTTATCCCCTCTTGTGTCACCTTCGTCTTGTGGGAATTCAGGGCAAGAAGAAGCGTTGTTGATGGCTGAGAATAAGGCGAGGGAGGAAGCCAAAGGGCTAGCCTTTACCAAAGGGCAGCACCCTGCGGCTCCATTTTATTATGAGCCAGTCCCAAGGGCCACACCCTTTGTGCCCGTGTGA

Protein sequence

MADAERKSSAVTQRQAPTRLQSQAPASIEIKRAQNWNVAIPLLSPLVSPSSCGNSGQEEALLMAENKAREEAKGLAFTKGQHPAAPFYYEPVPRATPFVPV
BLAST of Lsi05G016980 vs. Swiss-Prot
Match: Y4445_ARATH (Uncharacterized protein At4g14450, chloroplastic OS=Arabidopsis thaliana GN=At4g14450 PE=2 SV=1)

HSP 1 Score: 53.9 bits (128), Expect = 1.2e-06
Identity = 40/100 (40.00%), Postives = 53/100 (53.00%), Query Frame = 1

Query: 8   SSAVTQRQAPTRLQSQAPA-SIEIKRAQNWNVAIPLLSPLVSPSSCGNSGQEEALLMAEN 67
           SSA +  +  ++LQ +AP+  I+     NWNVAIPLLSPL    S  +S  +  +   +N
Sbjct: 28  SSAASNERQLSQLQRRAPSLMIKPTSFSNWNVAIPLLSPLA--PSLTSSFDQSHVPPPQN 87

Query: 68  KA-----REEAKGLAFTKGQHPAAPFYYEPVPRATPFVPV 102
           K       E  K   F K QHPA+PF YEP     PF+ V
Sbjct: 88  KTEIPVEEEVKKTPVFKKWQHPASPFCYEPTTFVPPFIQV 125

BLAST of Lsi05G016980 vs. TrEMBL
Match: A0A0A0L8D3_CUCSA (Uncharacterized protein OS=Cucumis sativus GN=Csa_3G141830 PE=4 SV=1)

HSP 1 Score: 154.5 bits (389), Expect = 7.1e-35
Identity = 81/101 (80.20%), Postives = 85/101 (84.16%), Query Frame = 1

Query: 1   MADAERKSSAVTQRQAPTRLQSQAPASIEIKRAQNWNVAIPLLSPLVSPSSCGNSGQEEA 60
           M+DAERK++      APTRLQSQAPASIEIKRA NWNVAIPLLSPLVSPSSCGNS  E+ 
Sbjct: 1   MSDAERKTATTV---APTRLQSQAPASIEIKRALNWNVAIPLLSPLVSPSSCGNSAPEKM 60

Query: 61  LLMAENKAREEAKGLAFTKGQHPAAPFYYEPVPRATPFVPV 102
           L MAEN AREE KGL FTK QHPAAPFYYEPVPRA PFVPV
Sbjct: 61  LSMAENNAREETKGLTFTKWQHPAAPFYYEPVPRANPFVPV 98

BLAST of Lsi05G016980 vs. TrEMBL
Match: M5XT20_PRUPE (Uncharacterized protein OS=Prunus persica GN=PRUPE_ppa013660mg PE=4 SV=1)

HSP 1 Score: 82.0 bits (201), Expect = 4.5e-13
Identity = 52/111 (46.85%), Postives = 69/111 (62.16%), Query Frame = 1

Query: 1   MADAERKSSAVTQRQAPTRLQSQAP--ASIEIKRAQNWNVAIPLLSPLVSPS----SCGN 60
           MADA R SS + +RQ P+RLQ +AP  +S++I R  +WN+AIPLLSPLVSP     +  +
Sbjct: 1   MADAPRPSSTINRRQ-PSRLQRRAPPPSSLQINRVPDWNIAIPLLSPLVSPDCPIDTTKS 60

Query: 61  SGQEEALLMAEN----KAREEAKGLAFTKGQHPAAPFYYEPVPRATPFVPV 102
             Q +   M  +    +A + A  + F K QHPAAPF YEP P  + FVPV
Sbjct: 61  RDQHQQKEMPRHHQGAEAEKSAPAMVFKKWQHPAAPFCYEPAPFVSAFVPV 110

BLAST of Lsi05G016980 vs. TrEMBL
Match: I1NI17_SOYBN (Uncharacterized protein OS=Glycine max GN=GLYMA_20G202600 PE=4 SV=1)

HSP 1 Score: 77.0 bits (188), Expect = 1.4e-11
Identity = 47/89 (52.81%), Postives = 55/89 (61.80%), Query Frame = 1

Query: 14  RQAPTRLQSQAPASIEIKRAQNWNVAIPLLSPLVSPSSCGNSGQEEALLMAENKAREEAK 73
           R+ P+RLQ +AP+S++I RA  WNVAIPLLSPL S  +       E     E   RE  K
Sbjct: 10  RRQPSRLQRRAPSSLQINRAVEWNVAIPLLSPLASSPT-----PIELKPPQEPPQREPEK 69

Query: 74  -GLAFTKGQHPAAPFYYEPVPRATPFVPV 102
             L+F K QHPAAPF YEP P   PFVPV
Sbjct: 70  VTLSFKKWQHPAAPFCYEPAPMVPPFVPV 93

BLAST of Lsi05G016980 vs. TrEMBL
Match: A0A0K9RTY8_SPIOL (Uncharacterized protein OS=Spinacia oleracea GN=SOVF_028650 PE=4 SV=1)

HSP 1 Score: 75.9 bits (185), Expect = 3.2e-11
Identity = 42/92 (45.65%), Postives = 62/92 (67.39%), Query Frame = 1

Query: 9  SAVTQRQAPTRLQSQAPASIEIKRAQNWNVAIPLLSPLVS--PSSCGNSGQEEALLMAEN 68
          S+  +R+  +RLQ +APASI++ R+  WNVAIPLLSPL S  P++  +SG +    ++ +
Sbjct: 4  SSSNRRRQSSRLQRRAPASIQVNRSTEWNVAIPLLSPLASSPPATQIDSGSQ---TISSS 63

Query: 69 KAREEAKGLAFTKGQHPAAPFYYEPVPRATPF 99
          K+ E++K + F K QHPAAPF Y+  P   PF
Sbjct: 64 KSSEQSKPVVFKKWQHPAAPFCYDSAPCTAPF 92

BLAST of Lsi05G016980 vs. TrEMBL
Match: I1LCD2_SOYBN (Uncharacterized protein OS=Glycine max GN=GLYMA_10G188200 PE=4 SV=1)

HSP 1 Score: 75.5 bits (184), Expect = 4.2e-11
Identity = 46/89 (51.69%), Postives = 54/89 (60.67%), Query Frame = 1

Query: 14  RQAPTRLQSQAPASIEIKRAQNWNVAIPLLSPLVSPSSCGNSGQEEALLMAENKAREEAK 73
           R  P+RLQ +AP+S++I RA  WNVAIPLLSPL S     +    E     E   RE  K
Sbjct: 10  RHQPSRLQRRAPSSLQINRAVEWNVAIPLLSPLAS-----SPPPMELKPPQEPPQREAEK 69

Query: 74  -GLAFTKGQHPAAPFYYEPVPRATPFVPV 102
             ++F K QHPAAPF YEP P   PFVPV
Sbjct: 70  VTVSFKKWQHPAAPFCYEPAPMVPPFVPV 93

BLAST of Lsi05G016980 vs. TAIR10
Match: AT1G04330.1 (AT1G04330.1 unknown protein)

HSP 1 Score: 56.2 bits (134), Expect = 1.3e-08
Identity = 41/102 (40.20%), Postives = 56/102 (54.90%), Query Frame = 1

Query: 1  MADAERKSSAVTQRQAPTRLQSQAPASIEIKRAQ-NWNVAIPLLSPLVSPSSCGNSGQEE 60
          M+   R  S    R++ +RLQ +AP  ++I   + NW VAIPLLSP  SP       +  
Sbjct: 1  MSSTARNISGSGNRKS-SRLQRRAPPPLKINPCEANWKVAIPLLSPTESPPQ-----KPP 60

Query: 61 ALLMAENK--AREEAKGLAFTKGQHPAAPFYYEPVPRAT-PF 99
          A++  E +   +E  K   F K QHPAAPFYY+P P +  PF
Sbjct: 61 AVMKREEQRWGKEAEKPPVFKKWQHPAAPFYYQPAPSSNQPF 96

BLAST of Lsi05G016980 vs. TAIR10
Match: AT3G23170.1 (AT3G23170.1 unknown protein)

HSP 1 Score: 55.5 bits (132), Expect = 2.3e-08
Identity = 40/92 (43.48%), Postives = 50/92 (54.35%), Query Frame = 1

Query: 14  RQAPTRLQSQAPASIEIKR---AQNWNVAIPLLSPL-VSPSSCGNSGQEEALLMAENKAR 73
           R+ P+RL  + PA   +     A NWN AIPLLSPL +SP S  +   +  +   ++ A 
Sbjct: 18  RRQPSRLLKRPPALKIVPATPAANNWNTAIPLLSPLALSPES--SPVDQPPVEKNQSTAV 77

Query: 74  EEAKGLAFTKGQHPAAPFYYEPVPRATPFVPV 102
              K   F K QHPAAPFYYE      PFVPV
Sbjct: 78  AVEKTPVFKKWQHPAAPFYYESSTFVPPFVPV 107

BLAST of Lsi05G016980 vs. TAIR10
Match: AT4G14450.1 (AT4G14450.1 unknown protein)

HSP 1 Score: 53.9 bits (128), Expect = 6.6e-08
Identity = 40/100 (40.00%), Postives = 53/100 (53.00%), Query Frame = 1

Query: 8   SSAVTQRQAPTRLQSQAPA-SIEIKRAQNWNVAIPLLSPLVSPSSCGNSGQEEALLMAEN 67
           SSA +  +  ++LQ +AP+  I+     NWNVAIPLLSPL    S  +S  +  +   +N
Sbjct: 28  SSAASNERQLSQLQRRAPSLMIKPTSFSNWNVAIPLLSPLA--PSLTSSFDQSHVPPPQN 87

Query: 68  KA-----REEAKGLAFTKGQHPAAPFYYEPVPRATPFVPV 102
           K       E  K   F K QHPA+PF YEP     PF+ V
Sbjct: 88  KTEIPVEEEVKKTPVFKKWQHPASPFCYEPTTFVPPFIQV 125

BLAST of Lsi05G016980 vs. NCBI nr
Match: gi|700201754|gb|KGN56887.1| (hypothetical protein Csa_3G141830 [Cucumis sativus])

HSP 1 Score: 154.5 bits (389), Expect = 1.0e-34
Identity = 81/101 (80.20%), Postives = 85/101 (84.16%), Query Frame = 1

Query: 1   MADAERKSSAVTQRQAPTRLQSQAPASIEIKRAQNWNVAIPLLSPLVSPSSCGNSGQEEA 60
           M+DAERK++      APTRLQSQAPASIEIKRA NWNVAIPLLSPLVSPSSCGNS  E+ 
Sbjct: 1   MSDAERKTATTV---APTRLQSQAPASIEIKRALNWNVAIPLLSPLVSPSSCGNSAPEKM 60

Query: 61  LLMAENKAREEAKGLAFTKGQHPAAPFYYEPVPRATPFVPV 102
           L MAEN AREE KGL FTK QHPAAPFYYEPVPRA PFVPV
Sbjct: 61  LSMAENNAREETKGLTFTKWQHPAAPFYYEPVPRANPFVPV 98

BLAST of Lsi05G016980 vs. NCBI nr
Match: gi|596192864|ref|XP_007223524.1| (hypothetical protein PRUPE_ppa013660mg [Prunus persica])

HSP 1 Score: 82.0 bits (201), Expect = 6.4e-13
Identity = 52/111 (46.85%), Postives = 69/111 (62.16%), Query Frame = 1

Query: 1   MADAERKSSAVTQRQAPTRLQSQAP--ASIEIKRAQNWNVAIPLLSPLVSPS----SCGN 60
           MADA R SS + +RQ P+RLQ +AP  +S++I R  +WN+AIPLLSPLVSP     +  +
Sbjct: 1   MADAPRPSSTINRRQ-PSRLQRRAPPPSSLQINRVPDWNIAIPLLSPLVSPDCPIDTTKS 60

Query: 61  SGQEEALLMAEN----KAREEAKGLAFTKGQHPAAPFYYEPVPRATPFVPV 102
             Q +   M  +    +A + A  + F K QHPAAPF YEP P  + FVPV
Sbjct: 61  RDQHQQKEMPRHHQGAEAEKSAPAMVFKKWQHPAAPFCYEPAPFVSAFVPV 110

BLAST of Lsi05G016980 vs. NCBI nr
Match: gi|645235692|ref|XP_008224388.1| (PREDICTED: uncharacterized protein At4g14450, chloroplastic-like [Prunus mume])

HSP 1 Score: 80.9 bits (198), Expect = 1.4e-12
Identity = 53/111 (47.75%), Postives = 69/111 (62.16%), Query Frame = 1

Query: 1   MADAERKSSAVTQRQAPTRLQSQAP--ASIEIKRAQNWNVAIPLLSPLVSP----SSCGN 60
           MADA R SS+  +RQ P+RLQ +AP  +S++I R  +WNVAIPLLSPLVSP     +  +
Sbjct: 1   MADAPRPSSSSNRRQ-PSRLQRRAPPPSSLQINRVPDWNVAIPLLSPLVSPDCPIDTTKS 60

Query: 61  SGQEEALLMAEN----KAREEAKGLAFTKGQHPAAPFYYEPVPRATPFVPV 102
             Q +   M  +    +A + A  + F K QHPAAPF YEP P  + FVPV
Sbjct: 61  RDQHQQKEMPRHHQGAEAEKSAPAMVFKKWQHPAAPFCYEPAPFVSAFVPV 110

BLAST of Lsi05G016980 vs. NCBI nr
Match: gi|697170557|ref|XP_009594196.1| (PREDICTED: uncharacterized protein At4g14450, chloroplastic-like [Nicotiana tomentosiformis])

HSP 1 Score: 80.5 bits (197), Expect = 1.9e-12
Identity = 52/108 (48.15%), Postives = 69/108 (63.89%), Query Frame = 1

Query: 1   MADAERKSSAVTQRQAPTRLQSQAPASIEIKRAQNWNVAIPLLSPLV-SPSSCGNSGQEE 60
           MAD +++SS+   R+ P+RLQ +APASI++ RA +WNVAIPLLSPL+ SP+S      + 
Sbjct: 1   MADNKQRSSSSGDRRQPSRLQRRAPASIQVNRATDWNVAIPLLSPLITSPTSPETDNLKA 60

Query: 61  ALLMAENKA-REEAKG-------LAFTKGQHPAAPFYYEPVPRATPFV 100
           A+    + A REE +        + F K QHPAAPF YEP P   PFV
Sbjct: 61  AINSFSSSAHREEVRKEHSEKPMMVFKKWQHPAAPFCYEPAP-LVPFV 107

BLAST of Lsi05G016980 vs. NCBI nr
Match: gi|1009141024|ref|XP_015887969.1| (PREDICTED: uncharacterized protein At4g14450, chloroplastic [Ziziphus jujuba])

HSP 1 Score: 79.7 bits (195), Expect = 3.2e-12
Identity = 51/115 (44.35%), Postives = 65/115 (56.52%), Query Frame = 1

Query: 1   MADAERKSSAVTQRQAPTRLQSQAPASIEIKRAQNWNVAIPLLSPLVSPSSCGNSGQEEA 60
           MAD+ R  +A    + P+RLQ +APAS++I    +WN+AIPLLSPLVSP+S      +  
Sbjct: 1   MADSSRTKAATGTCRPPSRLQRRAPASLQISPVSDWNIAIPLLSPLVSPTS-----PKAI 60

Query: 61  LLMAENKAREE--------------AKGLAFTKGQHPAAPFYYEPVPRATPFVPV 102
               E K+REE              A  +AF K QHPAAPF Y+  P   PFVPV
Sbjct: 61  ERTVEIKSREEHRHHHQSAEPEKPAATAVAFKKWQHPAAPFCYDNAPLIRPFVPV 110

The following BLAST results are available for this feature:
Match NameE-valueIdentityDescription
Y4445_ARATH1.2e-0640.00Uncharacterized protein At4g14450, chloroplastic OS=Arabidopsis thaliana GN=At4g... [more]
Match NameE-valueIdentityDescription
A0A0A0L8D3_CUCSA7.1e-3580.20Uncharacterized protein OS=Cucumis sativus GN=Csa_3G141830 PE=4 SV=1[more]
M5XT20_PRUPE4.5e-1346.85Uncharacterized protein OS=Prunus persica GN=PRUPE_ppa013660mg PE=4 SV=1[more]
I1NI17_SOYBN1.4e-1152.81Uncharacterized protein OS=Glycine max GN=GLYMA_20G202600 PE=4 SV=1[more]
A0A0K9RTY8_SPIOL3.2e-1145.65Uncharacterized protein OS=Spinacia oleracea GN=SOVF_028650 PE=4 SV=1[more]
I1LCD2_SOYBN4.2e-1151.69Uncharacterized protein OS=Glycine max GN=GLYMA_10G188200 PE=4 SV=1[more]
Match NameE-valueIdentityDescription
AT1G04330.11.3e-0840.20 unknown protein[more]
AT3G23170.12.3e-0843.48 unknown protein[more]
AT4G14450.16.6e-0840.00 unknown protein[more]
Match NameE-valueIdentityDescription
gi|700201754|gb|KGN56887.1|1.0e-3480.20hypothetical protein Csa_3G141830 [Cucumis sativus][more]
gi|596192864|ref|XP_007223524.1|6.4e-1346.85hypothetical protein PRUPE_ppa013660mg [Prunus persica][more]
gi|645235692|ref|XP_008224388.1|1.4e-1247.75PREDICTED: uncharacterized protein At4g14450, chloroplastic-like [Prunus mume][more]
gi|697170557|ref|XP_009594196.1|1.9e-1248.15PREDICTED: uncharacterized protein At4g14450, chloroplastic-like [Nicotiana tome... [more]
gi|1009141024|ref|XP_015887969.1|3.2e-1244.35PREDICTED: uncharacterized protein At4g14450, chloroplastic [Ziziphus jujuba][more]
The following terms have been associated with this gene:
Vocabulary: INTERPRO
TermDefinition
GO Assignments
This gene is annotated with the following GO terms.
Category Term Accession Term Name
biological_process GO:0008150 biological_process
cellular_component GO:0005575 cellular_component
molecular_function GO:0003674 molecular_function

The following mRNA feature(s) are a part of this gene:

Feature NameUnique NameType
Lsi05G016980.1Lsi05G016980.1mRNA


Analysis Name: InterPro Annotations of Lagenaria siceraria
Date Performed: 2017-09-18
IPR TermIPR DescriptionSourceSource TermSource DescriptionAlignment
NoneNo IPR availablePANTHERPTHR33912FAMILY NOT NAMEDcoord: 1..101
score: 3.8
NoneNo IPR availablePANTHERPTHR33912:SF2SUBFAMILY NOT NAMEDcoord: 1..101
score: 3.8

The following gene(s) are paralogous to this gene:

None

The following block(s) are covering this gene:
GeneOrganismBlock
Lsi05G016980Cucumber (Chinese Long) v3cuclsiB139
Lsi05G016980Cucumber (Chinese Long) v3cuclsiB228
Lsi05G016980Watermelon (97103) v2lsiwmbB341
Lsi05G016980Watermelon (97103) v2lsiwmbB347
Lsi05G016980Wax gourdlsiwgoB462
Lsi05G016980Bottle gourd (USVL1VR-Ls)lsilsiB011
Lsi05G016980Cucumber (Gy14) v1cgylsiB620
Lsi05G016980Cucurbita maxima (Rimu)cmalsiB009
Lsi05G016980Cucurbita maxima (Rimu)cmalsiB245
Lsi05G016980Cucurbita maxima (Rimu)cmalsiB356
Lsi05G016980Cucurbita maxima (Rimu)cmalsiB586
Lsi05G016980Cucurbita maxima (Rimu)cmalsiB764
Lsi05G016980Cucurbita maxima (Rimu)cmalsiB839
Lsi05G016980Cucurbita moschata (Rifu)cmolsiB233
Lsi05G016980Cucurbita moschata (Rifu)cmolsiB345
Lsi05G016980Cucurbita moschata (Rifu)cmolsiB757
Lsi05G016980Cucurbita moschata (Rifu)cmolsiB823
Lsi05G016980Cucurbita pepo (Zucchini)cpelsiB267
Lsi05G016980Cucurbita pepo (Zucchini)cpelsiB617
Lsi05G016980Cucurbita pepo (Zucchini)cpelsiB714
Lsi05G016980Wild cucumber (PI 183967)cpilsiB125
Lsi05G016980Cucumber (Chinese Long) v2culsiB127
Lsi05G016980Melon (DHL92) v3.5.1lsimeB360
Lsi05G016980Watermelon (Charleston Gray)lsiwcgB343
Lsi05G016980Watermelon (Charleston Gray)lsiwcgB349
Lsi05G016980Watermelon (97103) v1lsiwmB359
Lsi05G016980Watermelon (97103) v1lsiwmB382
Lsi05G016980Cucumber (Gy14) v2cgyblsiB115
Lsi05G016980Cucumber (Gy14) v2cgyblsiB196
Lsi05G016980Melon (DHL92) v3.6.1lsimedB375
Lsi05G016980Melon (DHL92) v3.6.1lsimedB396
Lsi05G016980Silver-seed gourdcarlsiB210
Lsi05G016980Silver-seed gourdcarlsiB718
Lsi05G016980Silver-seed gourdcarlsiB878