Carg10077 (gene) Silver-seed gourd

NameCarg10077
Typegene
OrganismCucurbita argyrosperma (Silver-seed gourd)
DescriptionATBET12, putative
LocationCucurbita_argyrosperma_scaffold_039 : 256271 .. 256615 (-)
The following sequences are available for this feature:

Gene sequence (with intron)

Legend: polypeptideCDSexon
Hold the cursor over a type above to highlight its positions in the sequence below.
ATGGCTGATTCACACAGACGAACCTCCACTCCCGCCGGTGCCTCTCGCCGCCATCCGCCGCCGCCGCAGCAGCCAGCCTGCTTTCGGAGCCGGGCGCCAGCGTCCCTGCAAATCAACCGCCCCGATTGGAAGGTCGCCATCCCTCTCTTGACCCCGCTCGTCTCCCCATCCTCACCCAAAGAGATACAAACTTGGGCGTCTAATTCCGGCGAAGGATCCTCCAATTCTTCAAATCATAAAGAATCGGAGCCGGAGAAGCCGCCGGTTTTTAAGAAATGGCAGCATCCGGCGGCCCCTTTTCAGTACGATTCCGGCCCTATGGATCCCAGATTCATCCCTGCTTAG

mRNA sequence

ATGGCTGATTCACACAGACGAACCTCCACTCCCGCCGGTGCCTCTCGCCGCCATCCGCCGCCGCCGCAGCAGCCAGCCTGCTTTCGGAGCCGGGCGCCAGCGTCCCTGCAAATCAACCGCCCCGATTGGAAGGTCGCCATCCCTCTCTTGACCCCGCTCGTCTCCCCATCCTCACCCAAAGAGATACAAACTTGGGCGTCTAATTCCGGCGAAGGATCCTCCAATTCTTCAAATCATAAAGAATCGGAGCCGGAGAAGCCGCCGGTTTTTAAGAAATGGCAGCATCCGGCGGCCCCTTTTCAGTACGATTCCGGCCCTATGGATCCCAGATTCATCCCTGCTTAG

Coding sequence (CDS)

ATGGCTGATTCACACAGACGAACCTCCACTCCCGCCGGTGCCTCTCGCCGCCATCCGCCGCCGCCGCAGCAGCCAGCCTGCTTTCGGAGCCGGGCGCCAGCGTCCCTGCAAATCAACCGCCCCGATTGGAAGGTCGCCATCCCTCTCTTGACCCCGCTCGTCTCCCCATCCTCACCCAAAGAGATACAAACTTGGGCGTCTAATTCCGGCGAAGGATCCTCCAATTCTTCAAATCATAAAGAATCGGAGCCGGAGAAGCCGCCGGTTTTTAAGAAATGGCAGCATCCGGCGGCCCCTTTTCAGTACGATTCCGGCCCTATGGATCCCAGATTCATCCCTGCTTAG

Protein sequence

MADSHRRTSTPAGASRRHPPPPQQPACFRSRAPASLQINRPDWKVAIPLLTPLVSPSSPKEIQTWASNSGEGSSNSSNHKESEPEKPPVFKKWQHPAAPFQYDSGPMDPRFIPA
BLAST of Carg10077 vs. NCBI nr
Match: XP_022958791.1 (uncharacterized protein At4g14450, chloroplastic-like [Cucurbita moschata])

HSP 1 Score: 207.2 bits (526), Expect = 2.9e-50
Identity = 101/114 (88.60%), Postives = 101/114 (88.60%), Query Frame = 0

Query: 1   MADSHRRTSTPAGXXXXXXXXXXXPACFRSRAPASLQINRPDWKVAIPLLTPLVSPSSPK 60
           MADSHRRTSTPAG           P CFRSRAPASLQINRPDWKVAIPLLTPLVSPSSPK
Sbjct: 37  MADSHRRTSTPAGASRRHPPPQQQPGCFRSRAPASLQINRPDWKVAIPLLTPLVSPSSPK 96

Query: 61  EIQTWASNSGEGSSNSSNHKESEPEKPPVFKKWQHPAAPFQYDSGPMDPRFIPA 115
           EIQTWA NSGEGSSNSSNHKESEPEKPPVFKKWQHPAAPFQYDSGPMDPRFIPA
Sbjct: 97  EIQTWAPNSGEGSSNSSNHKESEPEKPPVFKKWQHPAAPFQYDSGPMDPRFIPA 150

BLAST of Carg10077 vs. NCBI nr
Match: XP_023006762.1 (uncharacterized protein At4g14450, chloroplastic-like [Cucurbita maxima])

HSP 1 Score: 201.4 bits (511), Expect = 1.6e-48
Identity = 98/114 (85.96%), Postives = 99/114 (86.84%), Query Frame = 0

Query: 1   MADSHRRTSTPAGXXXXXXXXXXXPACFRSRAPASLQINRPDWKVAIPLLTPLVSPSSPK 60
           MADSHRR STPAG           P CFRSRAPASLQINRPDWKVAIPLLTPLVSPSSPK
Sbjct: 1   MADSHRRISTPAGGSRCHPPPQQQPGCFRSRAPASLQINRPDWKVAIPLLTPLVSPSSPK 60

Query: 61  EIQTWASNSGEGSSNSSNHKESEPEKPPVFKKWQHPAAPFQYDSGPMDPRFIPA 115
           EIQTWA NSGEGSSNSSNHKESEPEKPPVFKKWQHPAAPFQYDSGPMD RF+PA
Sbjct: 61  EIQTWAPNSGEGSSNSSNHKESEPEKPPVFKKWQHPAAPFQYDSGPMDSRFVPA 114

BLAST of Carg10077 vs. NCBI nr
Match: XP_023548297.1 (uncharacterized protein At4g14450, chloroplastic-like [Cucurbita pepo subsp. pepo])

HSP 1 Score: 190.7 bits (483), Expect = 2.8e-45
Identity = 104/114 (91.23%), Postives = 105/114 (92.11%), Query Frame = 0

Query: 1   MADSHRRTSTPAGXXXXXXXXXXXPACFRSRAPASLQINRPDWKVAIPLLTPLVSPSSPK 60
           M DSHRR      XXXXXXXXXXXP CFRSRAPASLQINRPDWKVAIPLLTPLVSPSSPK
Sbjct: 1   MPDSHRRXXXXXXXXXXXXXXXXXPGCFRSRAPASLQINRPDWKVAIPLLTPLVSPSSPK 60

Query: 61  EIQTWASNSGEGSSNSSNHKESEPEKPPVFKKWQHPAAPFQYDSGPMDPRFIPA 115
           EIQTWA NSGEGSSNSSNHKESEPEKPPVFKKWQHPAAPFQYDSGPMDPRF+PA
Sbjct: 61  EIQTWAPNSGEGSSNSSNHKESEPEKPPVFKKWQHPAAPFQYDSGPMDPRFVPA 114

BLAST of Carg10077 vs. NCBI nr
Match: XP_022138670.1 (uncharacterized protein At4g14450, chloroplastic-like [Momordica charantia])

HSP 1 Score: 114.0 bits (284), Expect = 3.3e-22
Identity = 68/115 (59.13%), Postives = 77/115 (66.96%), Query Frame = 0

Query: 1   MADSHRRTSTPAGXXXXXXXXXXXPACFRSRAPASLQINRPDWKVAIPLLTPLVSPSSPK 60
           MAD+ RRTS               P+  + RAPASLQI+R DWKVAIPLL+PLVSPSSP 
Sbjct: 1   MADTQRRTSGAGS------RRQQQPSRLQRRAPASLQISRSDWKVAIPLLSPLVSPSSPT 60

Query: 61  EIQTWASNSGEGSSNSSNHKESEPEKP--PVFKKWQHPAAPFQYDSGPMDPRFIP 114
           EIQ    NS E S++S     S+PEKP  PV KKWQHPAAPF YDSGP  PRF+P
Sbjct: 61  EIQ----NSREPSTSSQG---SDPEKPPVPVTKKWQHPAAPFHYDSGPRAPRFVP 102

BLAST of Carg10077 vs. NCBI nr
Match: XP_008460625.2 (PREDICTED: uncharacterized protein At4g14450, chloroplastic-like [Cucumis melo])

HSP 1 Score: 111.7 bits (278), Expect = 1.7e-21
Identity = 66/132 (50.00%), Postives = 72/132 (54.55%), Query Frame = 0

Query: 1   MADSHRRTSTPAGXXXXXXXXXXXPACFRSRAPASLQINRPDWKVAIPLLTPLVSPSSPK 60
           MADSHRRTS               P+  + RAPASLQINR DWKVAIPLL+PLVSPSSPK
Sbjct: 1   MADSHRRTSPTT------TRHPQQPSRLQRRAPASLQINRSDWKVAIPLLSPLVSPSSPK 60

Query: 61  EIQTWASNSGE-------------------GSSNSSNHKESEPEKPPVFKKWQHPAAPFQ 114
           +IQ W  +S E                                 K PVFKKWQHPAAPF 
Sbjct: 61  DIQNWTPDSREXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXKAPVFKKWQHPAAPFH 120

BLAST of Carg10077 vs. TAIR10
Match: AT1G04330.1 (unknown protein)

HSP 1 Score: 64.3 bits (155), Expect = 5.5e-11
Identity = 39/84 (46.43%), Postives = 43/84 (51.19%), Query Frame = 0

Query: 31  RAPASLQIN--RPDWKVAIPLLTPLVSPSS------PKEIQTWASNSGEGSSNSSNHKES 90
           RAP  L+IN    +WKVAIPLL+P  SP         +E Q W                 
Sbjct: 22  RAPPPLKINPCEANWKVAIPLLSPTESPPQKPPAVMKREEQRWG---------------K 81

Query: 91  EPEKPPVFKKWQHPAAPFQYDSGP 107
           E EKPPVFKKWQHPAAPF Y   P
Sbjct: 82  EAEKPPVFKKWQHPAAPFYYQPAP 90

BLAST of Carg10077 vs. TAIR10
Match: AT3G23170.1 (unknown protein)

HSP 1 Score: 55.1 bits (131), Expect = 3.3e-08
Identity = 34/74 (45.95%), Postives = 41/74 (55.41%), Query Frame = 0

Query: 42  DWKVAIPLLTPL-VSP-SSPKEIQTWASNSGEGSSNSSNHKESEPEKPPVFKKWQHPAAP 101
           +W  AIPLL+PL +SP SSP +      N     +          EK PVFKKWQHPAAP
Sbjct: 42  NWNTAIPLLSPLALSPESSPVDQPPVEKNQSTAVA---------VEKTPVFKKWQHPAAP 101

Query: 102 FQYDSGPMDPRFIP 114
           F Y+S    P F+P
Sbjct: 102 FYYESSTFVPPFVP 106

BLAST of Carg10077 vs. TAIR10
Match: AT4G14450.1 (unknown protein)

HSP 1 Score: 50.4 bits (119), Expect = 8.2e-07
Identity = 40/112 (35.71%), Postives = 52/112 (46.43%), Query Frame = 0

Query: 1   MADSHRRTSTPAGXXXXXXXXXXXPACFRSRAPASLQINRPDWKVAIPLLTPLVSPSSPK 60
           MA + +RTS+ A             A      P S      +W VAIPLL+PL +PS   
Sbjct: 19  MASTMQRTSSSAASNERQLSQLQRRAPSLMIKPTSFS----NWNVAIPLLSPL-APSLTS 78

Query: 61  EIQTWASNSGEGSSNSSNHKESEPEKPPVFKKWQHPAAPFQYDSGPMDPRFI 113
                 S+     + +    E E +K PVFKKWQHPA+PF Y+     P FI
Sbjct: 79  SFD--QSHVPPPQNKTEIPVEEEVKKTPVFKKWQHPASPFCYEPTTFVPPFI 123

BLAST of Carg10077 vs. Swiss-Prot
Match: sp|Q6NN02|Y4445_ARATH (Uncharacterized protein At4g14450, chloroplastic OS=Arabidopsis thaliana OX=3702 GN=At4g14450 PE=2 SV=1)

HSP 1 Score: 50.4 bits (119), Expect = 1.5e-05
Identity = 40/112 (35.71%), Postives = 52/112 (46.43%), Query Frame = 0

Query: 1   MADSHRRTSTPAGXXXXXXXXXXXPACFRSRAPASLQINRPDWKVAIPLLTPLVSPSSPK 60
           MA + +RTS+ A             A      P S      +W VAIPLL+PL +PS   
Sbjct: 19  MASTMQRTSSSAASNERQLSQLQRRAPSLMIKPTSFS----NWNVAIPLLSPL-APSLTS 78

Query: 61  EIQTWASNSGEGSSNSSNHKESEPEKPPVFKKWQHPAAPFQYDSGPMDPRFI 113
                 S+     + +    E E +K PVFKKWQHPA+PF Y+     P FI
Sbjct: 79  SFD--QSHVPPPQNKTEIPVEEEVKKTPVFKKWQHPASPFCYEPTTFVPPFI 123

BLAST of Carg10077 vs. TrEMBL
Match: tr|A0A1S3CDB1|A0A1S3CDB1_CUCME (uncharacterized protein At4g14450, chloroplastic-like OS=Cucumis melo OX=3656 GN=LOC103499403 PE=4 SV=1)

HSP 1 Score: 111.7 bits (278), Expect = 1.1e-21
Identity = 66/132 (50.00%), Postives = 72/132 (54.55%), Query Frame = 0

Query: 1   MADSHRRTSTPAGXXXXXXXXXXXPACFRSRAPASLQINRPDWKVAIPLLTPLVSPSSPK 60
           MADSHRRTS               P+  + RAPASLQINR DWKVAIPLL+PLVSPSSPK
Sbjct: 1   MADSHRRTSPTT------TRHPQQPSRLQRRAPASLQINRSDWKVAIPLLSPLVSPSSPK 60

Query: 61  EIQTWASNSGE-------------------GSSNSSNHKESEPEKPPVFKKWQHPAAPFQ 114
           +IQ W  +S E                                 K PVFKKWQHPAAPF 
Sbjct: 61  DIQNWTPDSREXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXKAPVFKKWQHPAAPFH 120

BLAST of Carg10077 vs. TrEMBL
Match: tr|A0A0A0LLJ8|A0A0A0LLJ8_CUCSA (Uncharacterized protein OS=Cucumis sativus OX=3659 GN=Csa_2G190740 PE=4 SV=1)

HSP 1 Score: 103.2 bits (256), Expect = 3.9e-19
Identity = 63/128 (49.22%), Postives = 71/128 (55.47%), Query Frame = 0

Query: 1   MADSHRRTSTPAGXXXXXXXXXXXPACFRSRAPASLQINRPDWKVAIPLLTPLVSP-SSP 60
           MADSH  TS  A            P+  + RAPASLQINR DWKVAIPLL+PLVSP SSP
Sbjct: 1   MADSHPPTSPAA-----------TPSRLQRRAPASLQINRSDWKVAIPLLSPLVSPSSSP 60

Query: 61  KEIQTWASNSGE--------------GSSNSSNHKESEPEKPPVFKKWQHPAAPFQYDSG 114
           K+I +W++                              PEK PVFKKWQHPAAPF YDSG
Sbjct: 61  KDIHSWSTPDSRQXXXXXXXXXXXXXXXXXXXXXXXXXPEKAPVFKKWQHPAAPFHYDSG 117

BLAST of Carg10077 vs. TrEMBL
Match: tr|A0A2K3M003|A0A2K3M003_TRIPR (Uncharacterized protein OS=Trifolium pratense OX=57577 GN=L195_g040164 PE=4 SV=1)

HSP 1 Score: 79.0 bits (193), Expect = 7.9e-12
Identity = 46/92 (50.00%), Postives = 58/92 (63.04%), Query Frame = 0

Query: 25  PACFRSRAPASLQINRP-DWKVAIPLLTPLVSPSSPKEIQTWASNSGEGSSNSSNHKESE 84
           P+  + RAP+SLQINR  DW VAIPLL+PL S   P+  +T  S   +G++       +E
Sbjct: 11  PSRLQKRAPSSLQINRSLDWNVAIPLLSPLASSPPPQLPETRPSQHNQGTT-------AE 70

Query: 85  PEKPPV--FKKWQHPAAPFQYDSGPMDPRFIP 114
           PEK  V  FK WQHPAAPF Y+  PM P F+P
Sbjct: 71  PEKVVVVTFKNWQHPAAPFCYEPAPMVPPFVP 95

BLAST of Carg10077 vs. TrEMBL
Match: tr|A0A1S4AEQ9|A0A1S4AEQ9_TOBAC (uncharacterized protein At4g14450, chloroplastic-like OS=Nicotiana tabacum OX=4097 GN=LOC107796858 PE=4 SV=1)

HSP 1 Score: 78.2 bits (191), Expect = 1.3e-11
Identity = 50/113 (44.25%), Postives = 70/113 (61.95%), Query Frame = 0

Query: 1   MADSHRRTSTPAGXXXXXXXXXXXPACFRSRAPASLQINR-PDWKVAIPLLTPLV-SPSS 60
           MAD+ +R+S+P             P+  + RAPAS+Q+NR  DW +AIPLL+PL+ SP+S
Sbjct: 1   MADNKQRSSSPG--------DRRQPSRLQRRAPASIQVNRATDWNLAIPLLSPLITSPTS 60

Query: 61  PKEIQTWAS-NSGEGSSNSSNHKESEPEKP-PVFKKWQHPAAPFQYDSGPMDP 110
           P+     A+ NS   S++    ++   EKP  VFKKWQHPAAPF Y+  P+ P
Sbjct: 61  PESDNLKAAINSFSSSAHKEEVRKEHLEKPMMVFKKWQHPAAPFCYEPAPLVP 105

BLAST of Carg10077 vs. TrEMBL
Match: tr|A0A1U7XUL9|A0A1U7XUL9_NICSY (uncharacterized protein At4g14450, chloroplastic-like OS=Nicotiana sylvestris OX=4096 GN=LOC104241393 PE=4 SV=1)

HSP 1 Score: 78.2 bits (191), Expect = 1.3e-11
Identity = 50/113 (44.25%), Postives = 70/113 (61.95%), Query Frame = 0

Query: 1   MADSHRRTSTPAGXXXXXXXXXXXPACFRSRAPASLQINR-PDWKVAIPLLTPLV-SPSS 60
           MAD+ +R+S+P             P+  + RAPAS+Q+NR  DW +AIPLL+PL+ SP+S
Sbjct: 1   MADNKQRSSSPG--------DRRQPSRLQRRAPASIQVNRATDWNLAIPLLSPLITSPTS 60

Query: 61  PKEIQTWAS-NSGEGSSNSSNHKESEPEKP-PVFKKWQHPAAPFQYDSGPMDP 110
           P+     A+ NS   S++    ++   EKP  VFKKWQHPAAPF Y+  P+ P
Sbjct: 61  PESDNLKAAINSFSSSAHKEEVRKEHLEKPMMVFKKWQHPAAPFCYEPAPLVP 105

The following BLAST results are available for this feature:
Match NameE-valueIdentityDescription
XP_022958791.12.9e-5088.60uncharacterized protein At4g14450, chloroplastic-like [Cucurbita moschata][more]
XP_023006762.11.6e-4885.96uncharacterized protein At4g14450, chloroplastic-like [Cucurbita maxima][more]
XP_023548297.12.8e-4591.23uncharacterized protein At4g14450, chloroplastic-like [Cucurbita pepo subsp. pep... [more]
XP_022138670.13.3e-2259.13uncharacterized protein At4g14450, chloroplastic-like [Momordica charantia][more]
XP_008460625.21.7e-2150.00PREDICTED: uncharacterized protein At4g14450, chloroplastic-like [Cucumis melo][more]
Match NameE-valueIdentityDescription
AT1G04330.15.5e-1146.43unknown protein[more]
AT3G23170.13.3e-0845.95unknown protein[more]
AT4G14450.18.2e-0735.71unknown protein[more]
Match NameE-valueIdentityDescription
sp|Q6NN02|Y4445_ARATH1.5e-0535.71Uncharacterized protein At4g14450, chloroplastic OS=Arabidopsis thaliana OX=3702... [more]
Match NameE-valueIdentityDescription
tr|A0A1S3CDB1|A0A1S3CDB1_CUCME1.1e-2150.00uncharacterized protein At4g14450, chloroplastic-like OS=Cucumis melo OX=3656 GN... [more]
tr|A0A0A0LLJ8|A0A0A0LLJ8_CUCSA3.9e-1949.22Uncharacterized protein OS=Cucumis sativus OX=3659 GN=Csa_2G190740 PE=4 SV=1[more]
tr|A0A2K3M003|A0A2K3M003_TRIPR7.9e-1250.00Uncharacterized protein OS=Trifolium pratense OX=57577 GN=L195_g040164 PE=4 SV=1[more]
tr|A0A1S4AEQ9|A0A1S4AEQ9_TOBAC1.3e-1144.25uncharacterized protein At4g14450, chloroplastic-like OS=Nicotiana tabacum OX=40... [more]
tr|A0A1U7XUL9|A0A1U7XUL9_NICSY1.3e-1144.25uncharacterized protein At4g14450, chloroplastic-like OS=Nicotiana sylvestris OX... [more]
GO Assignments
This gene is annotated with the following GO terms.
Category Term Accession Term Name
biological_process GO:0008150 biological_process
cellular_component GO:0005575 cellular_component
molecular_function GO:0003674 molecular_function

The following mRNA feature(s) are a part of this gene:

Feature NameUnique NameType
Carg10077-RACarg10077-RAmRNA


Analysis Name: InterPro Annotations of silver-seed gourd
Date Performed: 2019-03-07
IPR TermIPR DescriptionSourceSource TermSource DescriptionAlignment
NoneNo IPR availableMOBIDB_LITEmobidb-litedisorder_predictioncoord: 53..91
NoneNo IPR availableMOBIDB_LITEmobidb-litedisorder_predictioncoord: 56..77
NoneNo IPR availablePANTHERPTHR33912FAMILY NOT NAMEDcoord: 17..111
NoneNo IPR availablePANTHERPTHR33912:SF2F22G5.17coord: 17..111

The following gene(s) are paralogous to this gene:
GeneParalogueOrganismBlock
Carg10077Carg10953Silver-seed gourdcarcarB267