Cucsa.255150 (gene) Cucumber (Gy14) v1

Overview
NameCucsa.255150
Typegene
OrganismCucumis sativus (Cucumber (Gy14) v1)
DescriptionATBET12, putative
Locationscaffold02229 : 3269456 .. 3269752 (-)
Genome Viewer
Sequences
The following sequences are available for this feature:

Gene sequence (with intron)

Legend: CDS
Hold the cursor over a type above to highlight its positions in the sequence below.
ATGTCCGATGCAGAGAGAAAAACTGCCACCACCGTTGCACCCACGAGGCTGCAGAGCCAGGCTCCGGCATCCATCGAGATAAAGCGGGCGCTGAATTGGAACGTGGCCATACCGTTGTTATCCCCTCTTGTATCACCTTCGTCTTGTGGGAATTCAGCTCCAGAGAAAATGTTGTCAATGGCTGAGAATAATGCGAGGGAGGAAACCAAAGGGCTAACCTTTACCAAATGGCAGCACCCTGCGGCTCCATTTTATTATGAGCCTGTCCCAAGGGCTAACCCCTTTGTGCCTGTGTGA

mRNA sequence

ATGTCCGATGCAGAGAGAAAAACTGCCACCACCGTTGCACCCACGAGGCTGCAGAGCCAGGCTCCGGCATCCATCGAGATAAAGCGGGCGCTGAATTGGAACGTGGCCATACCGTTGTTATCCCCTCTTGTATCACCTTCGTCTTGTGGGAATTCAGCTCCAGAGAAAATGTTGTCAATGGCTGAGAATAATGCGAGGGAGGAAACCAAAGGGCTAACCTTTACCAAATGGCAGCACCCTGCGGCTCCATTTTATTATGAGCCTGTCCCAAGGGCTAACCCCTTTGTGCCTGTGTGA

Coding sequence (CDS)

ATGTCCGATGCAGAGAGAAAAACTGCCACCACCGTTGCACCCACGAGGCTGCAGAGCCAGGCTCCGGCATCCATCGAGATAAAGCGGGCGCTGAATTGGAACGTGGCCATACCGTTGTTATCCCCTCTTGTATCACCTTCGTCTTGTGGGAATTCAGCTCCAGAGAAAATGTTGTCAATGGCTGAGAATAATGCGAGGGAGGAAACCAAAGGGCTAACCTTTACCAAATGGCAGCACCCTGCGGCTCCATTTTATTATGAGCCTGTCCCAAGGGCTAACCCCTTTGTGCCTGTGTGA

Protein sequence

MSDAERKTATTVAPTRLQSQAPASIEIKRALNWNVAIPLLSPLVSPSSCGNSAPEKMLSMAENNAREETKGLTFTKWQHPAAPFYYEPVPRANPFVPV*
Homology
[Close]
BLAST of Cucsa.255150 vs. Swiss-Prot
Match: Y4445_ARATH (Uncharacterized protein At4g14450, chloroplastic OS=Arabidopsis thaliana GN=At4g14450 PE=2 SV=1)

HSP 1 Score: 60.8 bits (146), Expect = 9.4e-09
Identity = 42/107 (39.25%), Postives = 56/107 (52.34%), Query Frame = 1 

Query: 1   MSDAERKTATTVAP-----TRLQSQAPA-SIEIKRALNWNVAIPLLSPLVS--PSSCGNS 60
           M+   ++T+++ A      ++LQ +AP+  I+     NWNVAIPLLSPL     SS   S
Sbjct: 19  MASTMQRTSSSAASNERQLSQLQRRAPSLMIKPTSFSNWNVAIPLLSPLAPSLTSSFDQS 78

Query: 61  APEKMLSMAENNAREETKGL-TFTKWQHPAAPFYYEPVPRANPFVPV 99
                 +  E    EE K    F KWQHPA+PF YEP     PF+ V
Sbjct: 79  HVPPPQNKTEIPVEEEVKKTPVFKKWQHPASPFCYEPTTFVPPFIQV 125

[Close]
BLAST of Cucsa.255150 vs. TrEMBL
Match: A0A0A0L8D3_CUCSA (Uncharacterized protein OS=Cucumis sativus GN=Csa_3G141830 PE=4 SV=1)

HSP 1 Score: 201.4 bits (511), Expect = 5.0e-49
Identity = 98/98 (100.00%), Postives = 98/98 (100.00%), Query Frame = 1 

Query: 1  MSDAERKTATTVAPTRLQSQAPASIEIKRALNWNVAIPLLSPLVSPSSCGNSAPEKMLSM 60
          MSDAERKTATTVAPTRLQSQAPASIEIKRALNWNVAIPLLSPLVSPSSCGNSAPEKMLSM
Sbjct: 1  MSDAERKTATTVAPTRLQSQAPASIEIKRALNWNVAIPLLSPLVSPSSCGNSAPEKMLSM 60

Query: 61 AENNAREETKGLTFTKWQHPAAPFYYEPVPRANPFVPV 99
          AENNAREETKGLTFTKWQHPAAPFYYEPVPRANPFVPV
Sbjct: 61 AENNAREETKGLTFTKWQHPAAPFYYEPVPRANPFVPV 98

[Close]
BLAST of Cucsa.255150 vs. TrEMBL
Match: A0A151T165_CAJCA (Uncharacterized protein OS=Cajanus cajan GN=KK1_023207 PE=4 SV=1)

HSP 1 Score: 90.5 bits (223), Expect = 1.2e-15
Identity = 50/100 (50.00%), Postives = 61/100 (61.00%), Query Frame = 1 

Query: 1  MSDAERKTATTVAPTRLQSQAPASIEIKRALNWNVAIPLLSPLVSPSSCGNSAPEKMLSM 60
          MSD +R T     P+RLQ +AP+S+ I RA+ WNVAIPLLSPL S      S P   L  
Sbjct: 1  MSDLQRNTNNGHQPSRLQRRAPSSLTINRAVQWNVAIPLLSPLAS------SPPPIELKP 60

Query: 61 AENNAREETKGLT--FTKWQHPAAPFYYEPVPRANPFVPV 99
           ++  + E + +T  F  WQHPAAPF YEP P   PFVPV
Sbjct: 61 PQDPPQREPEKVTASFKNWQHPAAPFCYEPPPMVPPFVPV 94

[Close]
BLAST of Cucsa.255150 vs. TrEMBL
Match: I1NI17_SOYBN (Uncharacterized protein OS=Glycine max GN=GLYMA_20G202600 PE=4 SV=1)

HSP 1 Score: 89.0 bits (219), Expect = 3.6e-15
Identity = 47/86 (54.65%), Postives = 57/86 (66.28%), Query Frame = 1 

Query: 14 PTRLQSQAPASIEIKRALNWNVAIPLLSPLVSPSSCGNSAPEKMLSMAENNAREETK-GL 73
          P+RLQ +AP+S++I RA+ WNVAIPLLSPL S     +  P ++    E   RE  K  L
Sbjct: 13 PSRLQRRAPSSLQINRAVEWNVAIPLLSPLAS-----SPTPIELKPPQEPPQREPEKVTL 72

Query: 74 TFTKWQHPAAPFYYEPVPRANPFVPV 99
          +F KWQHPAAPF YEP P   PFVPV
Sbjct: 73 SFKKWQHPAAPFCYEPAPMVPPFVPV 93

[Close]
BLAST of Cucsa.255150 vs. TrEMBL
Match: I1LCD2_SOYBN (Uncharacterized protein OS=Glycine max GN=GLYMA_10G188200 PE=4 SV=1)

HSP 1 Score: 87.8 bits (216), Expect = 8.0e-15
Identity = 46/86 (53.49%), Postives = 57/86 (66.28%), Query Frame = 1 

Query: 14 PTRLQSQAPASIEIKRALNWNVAIPLLSPLVSPSSCGNSAPEKMLSMAENNAREETK-GL 73
          P+RLQ +AP+S++I RA+ WNVAIPLLSPL S     +  P ++    E   RE  K  +
Sbjct: 13 PSRLQRRAPSSLQINRAVEWNVAIPLLSPLAS-----SPPPMELKPPQEPPQREAEKVTV 72

Query: 74 TFTKWQHPAAPFYYEPVPRANPFVPV 99
          +F KWQHPAAPF YEP P   PFVPV
Sbjct: 73 SFKKWQHPAAPFCYEPAPMVPPFVPV 93

[Close]
BLAST of Cucsa.255150 vs. TrEMBL
Match: V7BGS6_PHAVU (Uncharacterized protein OS=Phaseolus vulgaris GN=PHAVU_007G129100g PE=4 SV=1)

HSP 1 Score: 84.7 bits (208), Expect = 6.8e-14
Identity = 45/86 (52.33%), Postives = 57/86 (66.28%), Query Frame = 1 

Query: 14  PTRLQSQAPASIEIKRALNWNVAIPLLSPLVSPSSCGNSAPEKMLSMAENNAREETK-GL 73
           P+RLQ +AP+S++I R+L+WNVAIPLLSPL S     +  P ++    E   RE  K  +
Sbjct: 88  PSRLQRRAPSSLQISRSLDWNVAIPLLSPLAS-----SPPPLELKPPQEPPQREAEKVSV 147

Query: 74  TFTKWQHPAAPFYYEPVPRANPFVPV 99
           +F KWQHPAAPF YEP     PFVPV
Sbjct: 148 SFKKWQHPAAPFCYEPAAIVPPFVPV 168

[Close]
BLAST of Cucsa.255150 vs. TAIR10
Match: AT1G04330.1 (AT1G04330.1 unknown protein)

HSP 1 Score: 69.3 bits (168), Expect = 1.5e-12
Identity = 39/83 (46.99%), Postives = 47/83 (56.63%), Query Frame = 1 

Query: 15 TRLQSQAPASIEIKRA-LNWNVAIPLLSPLVSPSSCGNSAPEKMLSMAENNAREETKGLT 74
          +RLQ +AP  ++I     NW VAIPLLSP  SP       P  M    +   +E  K   
Sbjct: 17 SRLQRRAPPPLKINPCEANWKVAIPLLSPTESPPQ---KPPAVMKREEQRWGKEAEKPPV 76

Query: 75 FTKWQHPAAPFYYEPVPRAN-PF 96
          F KWQHPAAPFYY+P P +N PF
Sbjct: 77 FKKWQHPAAPFYYQPAPSSNQPF 96

[Close]
BLAST of Cucsa.255150 vs. TAIR10
Match: AT3G23170.1 (AT3G23170.1 unknown protein)

HSP 1 Score: 65.5 bits (158), Expect = 2.2e-11
Identity = 42/89 (47.19%), Postives = 49/89 (55.06%), Query Frame = 1 

Query: 14  PTRLQSQAPASIEIKR---ALNWNVAIPLLSPL-VSPSSCGNSAPEKMLSMAENNAREET 73
           P+RL  + PA   +     A NWN AIPLLSPL +SP S     P    + +   A E+T
Sbjct: 21  PSRLLKRPPALKIVPATPAANNWNTAIPLLSPLALSPESSPVDQPPVEKNQSTAVAVEKT 80

Query: 74  KGLTFTKWQHPAAPFYYEPVPRANPFVPV 99
               F KWQHPAAPFYYE      PFVPV
Sbjct: 81  P--VFKKWQHPAAPFYYESSTFVPPFVPV 107

[Close]
BLAST of Cucsa.255150 vs. TAIR10
Match: AT4G14450.1 (AT4G14450.1 unknown protein)

HSP 1 Score: 60.8 bits (146), Expect = 5.3e-10
Identity = 42/107 (39.25%), Postives = 56/107 (52.34%), Query Frame = 1 

Query: 1   MSDAERKTATTVAP-----TRLQSQAPA-SIEIKRALNWNVAIPLLSPLVS--PSSCGNS 60
           M+   ++T+++ A      ++LQ +AP+  I+     NWNVAIPLLSPL     SS   S
Sbjct: 19  MASTMQRTSSSAASNERQLSQLQRRAPSLMIKPTSFSNWNVAIPLLSPLAPSLTSSFDQS 78

Query: 61  APEKMLSMAENNAREETKGL-TFTKWQHPAAPFYYEPVPRANPFVPV 99
                 +  E    EE K    F KWQHPA+PF YEP     PF+ V
Sbjct: 79  HVPPPQNKTEIPVEEEVKKTPVFKKWQHPASPFCYEPTTFVPPFIQV 125

[Close]
BLAST of Cucsa.255150 vs. NCBI nr
Match: gi|700201754|gb|KGN56887.1| (hypothetical protein Csa_3G141830 [Cucumis sativus])

HSP 1 Score: 201.4 bits (511), Expect = 7.1e-49
Identity = 98/98 (100.00%), Postives = 98/98 (100.00%), Query Frame = 1 

Query: 1  MSDAERKTATTVAPTRLQSQAPASIEIKRALNWNVAIPLLSPLVSPSSCGNSAPEKMLSM 60
          MSDAERKTATTVAPTRLQSQAPASIEIKRALNWNVAIPLLSPLVSPSSCGNSAPEKMLSM
Sbjct: 1  MSDAERKTATTVAPTRLQSQAPASIEIKRALNWNVAIPLLSPLVSPSSCGNSAPEKMLSM 60

Query: 61 AENNAREETKGLTFTKWQHPAAPFYYEPVPRANPFVPV 99
          AENNAREETKGLTFTKWQHPAAPFYYEPVPRANPFVPV
Sbjct: 61 AENNAREETKGLTFTKWQHPAAPFYYEPVPRANPFVPV 98

[Close]
BLAST of Cucsa.255150 vs. NCBI nr
Match: gi|1012349604|gb|KYP60794.1| (hypothetical protein KK1_023207 [Cajanus cajan])

HSP 1 Score: 90.5 bits (223), Expect = 1.8e-15
Identity = 50/100 (50.00%), Postives = 61/100 (61.00%), Query Frame = 1 

Query: 1  MSDAERKTATTVAPTRLQSQAPASIEIKRALNWNVAIPLLSPLVSPSSCGNSAPEKMLSM 60
          MSD +R T     P+RLQ +AP+S+ I RA+ WNVAIPLLSPL S      S P   L  
Sbjct: 1  MSDLQRNTNNGHQPSRLQRRAPSSLTINRAVQWNVAIPLLSPLAS------SPPPIELKP 60

Query: 61 AENNAREETKGLT--FTKWQHPAAPFYYEPVPRANPFVPV 99
           ++  + E + +T  F  WQHPAAPF YEP P   PFVPV
Sbjct: 61 PQDPPQREPEKVTASFKNWQHPAAPFCYEPPPMVPPFVPV 94

[Close]
BLAST of Cucsa.255150 vs. NCBI nr
Match: gi|571569255|ref|XP_006606361.1| (PREDICTED: uncharacterized protein At4g14450, chloroplastic-like [Glycine max])

HSP 1 Score: 89.0 bits (219), Expect = 5.2e-15
Identity = 47/86 (54.65%), Postives = 57/86 (66.28%), Query Frame = 1 

Query: 14 PTRLQSQAPASIEIKRALNWNVAIPLLSPLVSPSSCGNSAPEKMLSMAENNAREETK-GL 73
          P+RLQ +AP+S++I RA+ WNVAIPLLSPL S     +  P ++    E   RE  K  L
Sbjct: 13 PSRLQRRAPSSLQINRAVEWNVAIPLLSPLAS-----SPTPIELKPPQEPPQREPEKVTL 72

Query: 74 TFTKWQHPAAPFYYEPVPRANPFVPV 99
          +F KWQHPAAPF YEP P   PFVPV
Sbjct: 73 SFKKWQHPAAPFCYEPAPMVPPFVPV 93

[Close]
BLAST of Cucsa.255150 vs. NCBI nr
Match: gi|571483637|ref|XP_006589298.1| (PREDICTED: uncharacterized protein At4g14450, chloroplastic-like [Glycine max])

HSP 1 Score: 87.8 bits (216), Expect = 1.1e-14
Identity = 46/86 (53.49%), Postives = 57/86 (66.28%), Query Frame = 1 

Query: 14 PTRLQSQAPASIEIKRALNWNVAIPLLSPLVSPSSCGNSAPEKMLSMAENNAREETK-GL 73
          P+RLQ +AP+S++I RA+ WNVAIPLLSPL S     +  P ++    E   RE  K  +
Sbjct: 13 PSRLQRRAPSSLQINRAVEWNVAIPLLSPLAS-----SPPPMELKPPQEPPQREAEKVTV 72

Query: 74 TFTKWQHPAAPFYYEPVPRANPFVPV 99
          +F KWQHPAAPF YEP P   PFVPV
Sbjct: 73 SFKKWQHPAAPFCYEPAPMVPPFVPV 93

[Close]
BLAST of Cucsa.255150 vs. NCBI nr
Match: gi|1009141024|ref|XP_015887969.1| (PREDICTED: uncharacterized protein At4g14450, chloroplastic [Ziziphus jujuba])

HSP 1 Score: 86.3 bits (212), Expect = 3.3e-14
Identity = 50/115 (43.48%), Postives = 65/115 (56.52%), Query Frame = 1 

Query: 1   MSDAERKTATTVA---PTRLQSQAPASIEIKRALNWNVAIPLLSPLVSPSSCGNSAPEKM 60
           M+D+ R  A T     P+RLQ +APAS++I    +WN+AIPLLSPLVSP+S     P+ +
Sbjct: 1   MADSSRTKAATGTCRPPSRLQRRAPASLQISPVSDWNIAIPLLSPLVSPTS-----PKAI 60

Query: 61  LSMAENNAREETK--------------GLTFTKWQHPAAPFYYEPVPRANPFVPV 99
               E  +REE +               + F KWQHPAAPF Y+  P   PFVPV
Sbjct: 61  ERTVEIKSREEHRHHHQSAEPEKPAATAVAFKKWQHPAAPFCYDNAPLIRPFVPV 110

The following BLAST results are available for this feature:
BLAST of Cucsa.255150 vs. Swiss-Prot
Match NameE-valueIdentityDescription
Y4445_ARATH9.4e-0939.25Uncharacterized protein At4g14450, chloroplastic OS=Arabidopsis thaliana GN=At4g... [more]
BLAST of Cucsa.255150 vs. TrEMBL
Match NameE-valueIdentityDescription
A0A0A0L8D3_CUCSA5.0e-49100.00Uncharacterized protein OS=Cucumis sativus GN=Csa_3G141830 PE=4 SV=1[more]
A0A151T165_CAJCA1.2e-1550.00Uncharacterized protein OS=Cajanus cajan GN=KK1_023207 PE=4 SV=1[more]
I1NI17_SOYBN3.6e-1554.65Uncharacterized protein OS=Glycine max GN=GLYMA_20G202600 PE=4 SV=1[more]
I1LCD2_SOYBN8.0e-1553.49Uncharacterized protein OS=Glycine max GN=GLYMA_10G188200 PE=4 SV=1[more]
V7BGS6_PHAVU6.8e-1452.33Uncharacterized protein OS=Phaseolus vulgaris GN=PHAVU_007G129100g PE=4 SV=1[more]
BLAST of Cucsa.255150 vs. TAIR10
Match NameE-valueIdentityDescription
AT1G04330.11.5e-1246.99 unknown protein[more]
AT3G23170.12.2e-1147.19 unknown protein[more]
AT4G14450.15.3e-1039.25 unknown protein[more]
BLAST of Cucsa.255150 vs. NCBI nr
Match NameE-valueIdentityDescription
gi|700201754|gb|KGN56887.1|7.1e-49100.00hypothetical protein Csa_3G141830 [Cucumis sativus][more]
gi|1012349604|gb|KYP60794.1|1.8e-1550.00hypothetical protein KK1_023207 [Cajanus cajan][more]
gi|571569255|ref|XP_006606361.1|5.2e-1554.65PREDICTED: uncharacterized protein At4g14450, chloroplastic-like [Glycine max][more]
gi|571483637|ref|XP_006589298.1|1.1e-1453.49PREDICTED: uncharacterized protein At4g14450, chloroplastic-like [Glycine max][more]
gi|1009141024|ref|XP_015887969.1|3.3e-1443.48PREDICTED: uncharacterized protein At4g14450, chloroplastic [Ziziphus jujuba][more]
Annotated Terms
The following terms have been associated with this gene:
Vocabulary: INTERPRO
TermDefinition
GO Annotation
GO Assignments
This gene is annotated with the following GO terms.
Category Term Accession Term Name
biological_process GO:0008150 biological_process
cellular_component GO:0005575 cellular_component
molecular_function GO:0003674 molecular_function
Relationships

The following mRNA feature(s) are a part of this gene:

Feature NameUnique NameType
Cucsa.255150.1Cucsa.255150.1mRNA


InterPro
Analysis Name: InterPro Annotations of cucumber (Gy14)
Date Performed: 2017-01-17
IPR TermIPR DescriptionSourceSource TermSource DescriptionAlignment
NoneNo IPR availablePANTHERPTHR33912FAMILY NOT NAMEDcoord: 14..98
score: 3.2
NoneNo IPR availablePANTHERPTHR33912:SF2SUBFAMILY NOT NAMEDcoord: 14..98
score: 3.2

Synteny
The following gene(s) are orthologous to this gene:
GeneOrthologueOrganismBlock
Cucsa.255150Cla021548Watermelon (97103) v1cgywmB479
Cucsa.255150Csa3G141830Cucumber (Chinese Long) v2cgycuB366
Cucsa.255150MELO3C006449Melon (DHL92) v3.5.1cgymeB439
Cucsa.255150ClCG05G004480Watermelon (Charleston Gray)cgywcgB451
Cucsa.255150CSPI03G12250Wild cucumber (PI 183967)cgycpiB383
Cucsa.255150CmaCh14G017950Cucurbita maxima (Rimu)cgycmaB0709
Cucsa.255150CmoCh14G018330Cucurbita moschata (Rifu)cgycmoB0700
Cucsa.255150Lsi05G016980Bottle gourd (USVL1VR-Ls)cgylsiB415
Cucsa.255150Cp4.1LG03g09950Cucurbita pepo (Zucchini)cgycpeB0682
Cucsa.255150CsaV3_3G012380Cucumber (Chinese Long) v3cgycucB387
Cucsa.255150Cla97C05G085400Watermelon (97103) v2cgywmbB452
Cucsa.255150Cla97C06G116440Watermelon (97103) v2cgywmbB453
Cucsa.255150BhiUN533G6Wax gourdcgywgoB531
Cucsa.255150Bhi12G001455Wax gourdcgywgoB510
Cucsa.255150Carg10077Silver-seed gourdcarcgyB0269
Cucsa.255150Carg16573Silver-seed gourdcarcgyB0276
Cucsa.255150Carg10953Silver-seed gourdcarcgyB1190
The following gene(s) are paralogous to this gene:

None

The following block(s) are covering this gene:
GeneOrganismBlock
Cucsa.255150Cucurbita pepo (Zucchini)cgycpeB0687
Cucsa.255150Bottle gourd (USVL1VR-Ls)cgylsiB412
Cucsa.255150Melon (DHL92) v3.6.1cgymedB429
Cucsa.255150Melon (DHL92) v3.6.1cgymedB432
Cucsa.255150Silver-seed gourdcarcgyB1077
Cucsa.255150Cucumber (Gy14) v1cgycgyB133
Cucsa.255150Cucurbita maxima (Rimu)cgycmaB0727
Cucsa.255150Cucurbita moschata (Rifu)cgycmoB0718
Cucsa.255150Wild cucumber (PI 183967)cgycpiB378
Cucsa.255150Cucumber (Chinese Long) v2cgycuB362
Cucsa.255150Melon (DHL92) v3.5.1cgymeB434
Cucsa.255150Watermelon (Charleston Gray)cgywcgB452
Cucsa.255150Watermelon (Charleston Gray)cgywcgB457
Cucsa.255150Watermelon (97103) v1cgywmB475
Cucsa.255150Watermelon (97103) v1cgywmB483