Carg10953 (gene) Silver-seed gourd

NameCarg10953
Typegene
OrganismCucurbita argyrosperma (Silver-seed gourd)
DescriptionATBET12, putative
LocationCucurbita_argyrosperma_scaffold_027 : 52861 .. 53211 (-)
The following sequences are available for this feature:

Gene sequence (with intron)

Legend: polypeptideCDSexon
Hold the cursor over a type above to highlight its positions in the sequence below.
ATGGCCGAATCGCAGAGACGACCCTCCGGCACCGCCGCCCGGAAGCAGCAGCCAAGCCGCCTGCAGCGCCGGGCTCCAGCCTCCCTCCAAATCAGCCGCTCCGATTGGAAGGTCGCCATCCCTCTCCTATCGCCACTCGTATCGCCATCGTCGCCGACAGAGATCCAAAATTGGACCGCCGATTCAGGATCGATTTCTTCTTCTTCTTCTCATCATCATCATCATCATCATCATCATCATAAAGAATCGGAGCCGGAGAAGCCGCCAGTTTTTAAGAAATGGCAGCATCCGGCGGCGCCGTTTCATTACGATTCGGGTTCTAGGGCTCCCAGAGCATTCGTACCCGTTTAG

mRNA sequence

ATGGCCGAATCGCAGAGACGACCCTCCGGCACCGCCGCCCGGAAGCAGCAGCCAAGCCGCCTGCAGCGCCGGGCTCCAGCCTCCCTCCAAATCAGCCGCTCCGATTGGAAGGTCGCCATCCCTCTCCTATCGCCACTCGTATCGCCATCGTCGCCGACAGAGATCCAAAATTGGACCGCCGATTCAGGATCGATTTCTTCTTCTTCTTCTCATCATCATCATCATCATCATCATCATCATAAAGAATCGGAGCCGGAGAAGCCGCCAGTTTTTAAGAAATGGCAGCATCCGGCGGCGCCGTTTCATTACGATTCGGGTTCTAGGGCTCCCAGAGCATTCGTACCCGTTTAG

Coding sequence (CDS)

ATGGCCGAATCGCAGAGACGACCCTCCGGCACCGCCGCCCGGAAGCAGCAGCCAAGCCGCCTGCAGCGCCGGGCTCCAGCCTCCCTCCAAATCAGCCGCTCCGATTGGAAGGTCGCCATCCCTCTCCTATCGCCACTCGTATCGCCATCGTCGCCGACAGAGATCCAAAATTGGACCGCCGATTCAGGATCGATTTCTTCTTCTTCTTCTCATCATCATCATCATCATCATCATCATCATAAAGAATCGGAGCCGGAGAAGCCGCCAGTTTTTAAGAAATGGCAGCATCCGGCGGCGCCGTTTCATTACGATTCGGGTTCTAGGGCTCCCAGAGCATTCGTACCCGTTTAG

Protein sequence

MAESQRRPSGTAARKQQPSRLQRRAPASLQISRSDWKVAIPLLSPLVSPSSPTEIQNWTADSGSISSSSSHHHHHHHHHHKESEPEKPPVFKKWQHPAAPFHYDSGSRAPRAFVPV
BLAST of Carg10953 vs. NCBI nr
Match: XP_022930471.1 (uncharacterized protein At4g14450, chloroplastic-like [Cucurbita moschata])

HSP 1 Score: 169.9 bits (429), Expect = 5.2e-39
Identity = 113/116 (97.41%), Postives = 113/116 (97.41%), Query Frame = 0

Query: 1   MAESQRRPSGTAARKQQPSRLQRRAPASLQISRSDWKVAIPLLSPLVSPSSPTEIQNWTA 60
           MAESQRRPSGTAARKQQPSRLQRRAPASLQISRSDWKVAIPLLSPLVSPSSPTEIQNWTA
Sbjct: 1   MAESQRRPSGTAARKQQPSRLQRRAPASLQISRSDWKVAIPLLSPLVSPSSPTEIQNWTA 60

Query: 61  DSGSIXXXXXXXXXXXXXXXXXXXXXXXXVFKKWQHPAAPFHYDSGSRAPRAFVPV 117
           DSGSI   XXXXXXXXXXXXXXXXXXXXXVFKKWQHPAAPFHYDSGSRAPRAFVPV
Sbjct: 61  DSGSI---XXXXXXXXXXXXXXXXXXXXXVFKKWQHPAAPFHYDSGSRAPRAFVPV 113

BLAST of Carg10953 vs. NCBI nr
Match: XP_023515028.1 (uncharacterized protein At4g14450, chloroplastic-like [Cucurbita pepo subsp. pepo])

HSP 1 Score: 165.2 bits (417), Expect = 1.3e-37
Identity = 109/116 (93.97%), Postives = 111/116 (95.69%), Query Frame = 0

Query: 1   MAESQRRPSGTAARKQQPSRLQRRAPASLQISRSDWKVAIPLLSPLVSPSSPTEIQNWTA 60
           MAESQRRPS TA+RKQQPSRLQRRAPASLQISRSDWKVAIPLLSPLVSPSSPTEIQNWTA
Sbjct: 1   MAESQRRPSATASRKQQPSRLQRRAPASLQISRSDWKVAIPLLSPLVSPSSPTEIQNWTA 60

Query: 61  DSGSIXXXXXXXXXXXXXXXXXXXXXXXXVFKKWQHPAAPFHYDSGSRAPRAFVPV 117
           DSG+I    XXXXXXXXXXXXXXXXXXXXVFKKWQHPAAPFHYDSGSRAPRAFVPV
Sbjct: 61  DSGAI----XXXXXXXXXXXXXXXXXXXXVFKKWQHPAAPFHYDSGSRAPRAFVPV 112

BLAST of Carg10953 vs. NCBI nr
Match: XP_023000559.1 (uncharacterized protein At4g14450, chloroplastic-like [Cucurbita maxima])

HSP 1 Score: 164.9 bits (416), Expect = 1.7e-37
Identity = 113/116 (97.41%), Postives = 113/116 (97.41%), Query Frame = 0

Query: 1   MAESQRRPSGTAARKQQPSRLQRRAPASLQISRSDWKVAIPLLSPLVSPSSPTEIQNWTA 60
           MAESQRR SG AARKQQPSRLQRRAPASLQISRSDWKVAIPLLSPLVSPSSPTEIQNWTA
Sbjct: 1   MAESQRRASGAAARKQQPSRLQRRAPASLQISRSDWKVAIPLLSPLVSPSSPTEIQNWTA 60

Query: 61  DSGSIXXXXXXXXXXXXXXXXXXXXXXXXVFKKWQHPAAPFHYDSGSRAPRAFVPV 117
           DSGSI XXXXXXXXXXXXXXXXXXXXXXXVFKKWQHPAAPFHYDSGSRAPRAFVPV
Sbjct: 61  DSGSI-XXXXXXXXXXXXXXXXXXXXXXXVFKKWQHPAAPFHYDSGSRAPRAFVPV 115

BLAST of Carg10953 vs. NCBI nr
Match: XP_022138670.1 (uncharacterized protein At4g14450, chloroplastic-like [Momordica charantia])

HSP 1 Score: 125.6 bits (314), Expect = 1.1e-25
Identity = 76/117 (64.96%), Postives = 80/117 (68.38%), Query Frame = 0

Query: 1   MAESQRRPSGTAARK-QQPSRLQRRAPASLQISRSDWKVAIPLLSPLVSPSSPTEIQNWT 60
           MA++QRR SG  +R+ QQPSRLQRRAPASLQISRSDWKVAIPLLSPLVSPSSPTEIQN  
Sbjct: 1   MADTQRRTSGAGSRRQQQPSRLQRRAPASLQISRSDWKVAIPLLSPLVSPSSPTEIQNSR 60

Query: 61  ADSGSIXXXXXXXXXXXXXXXXXXXXXXXXVFKKWQHPAAPFHYDSGSRAPRAFVPV 117
             S S                         V KKWQHPAAPFHYDSG RAPR FVPV
Sbjct: 61  EPSTS-------------SQGSDPEKPPVPVTKKWQHPAAPFHYDSGPRAPR-FVPV 103

BLAST of Carg10953 vs. NCBI nr
Match: XP_008460625.2 (PREDICTED: uncharacterized protein At4g14450, chloroplastic-like [Cucumis melo])

HSP 1 Score: 125.2 bits (313), Expect = 1.5e-25
Identity = 97/128 (75.78%), Postives = 100/128 (78.12%), Query Frame = 0

Query: 1   MAESQRRPSGTAAR-KQQPSRLQRRAPASLQISRSDWKVAIPLLSPLVSPSSPTEIQNWT 60
           MA+S RR S T  R  QQPSRLQRRAPASLQI+RSDWKVAIPLLSPLVSPSSP +IQNWT
Sbjct: 1   MADSHRRTSPTTTRHPQQPSRLQRRAPASLQINRSDWKVAIPLLSPLVSPSSPKDIQNWT 60

Query: 61  ADS-----------GSIXXXXXXXXXXXXXXXXXXXXXXXXVFKKWQHPAAPFHYDSGSR 117
            DS              XXXXXXXXXXXXXXXXXXXXX   VFKKWQHPAAPFHYDSG R
Sbjct: 61  PDSREXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXKAPVFKKWQHPAAPFHYDSGPR 120

BLAST of Carg10953 vs. TAIR10
Match: AT1G04330.1 (unknown protein)

HSP 1 Score: 58.9 bits (141), Expect = 2.4e-09
Identity = 45/121 (37.19%), Postives = 57/121 (47.11%), Query Frame = 0

Query: 1   MAESQRRPSGTAARKQQPSRLQRRAPASLQIS--RSDWKVAIPLLSPLVSPSS------P 60
           M+ + R  SG+  RK   SRLQRRAP  L+I+   ++WKVAIPLLSP  SP         
Sbjct: 1   MSSTARNISGSGNRKS--SRLQRRAPPPLKINPCEANWKVAIPLLSPTESPPQKPPAVMK 60

Query: 61  TEIQNWTADSGSIXXXXXXXXXXXXXXXXXXXXXXXXVFKKWQHPAAPFHYDSGSRAPRA 114
            E Q W  ++                           VFKKWQHPAAPF+Y     + + 
Sbjct: 61  REEQRWGKEA-----------------------EKPPVFKKWQHPAAPFYYQPAPSSNQP 96

BLAST of Carg10953 vs. TAIR10
Match: AT3G23170.1 (unknown protein)

HSP 1 Score: 54.7 bits (130), Expect = 4.5e-08
Identity = 43/113 (38.05%), Postives = 54/113 (47.79%), Query Frame = 0

Query: 15  KQQPSRLQRRAPASLQI----SRSDWKVAIPLLSPL-VSPSS------PTEIQNWTADSG 74
           ++QPSRL +R PA   +    + ++W  AIPLLSPL +SP S      P E    TA   
Sbjct: 18  RRQPSRLLKRPPALKIVPATPAANNWNTAIPLLSPLALSPESSPVDQPPVEKNQSTA--- 77

Query: 75  SIXXXXXXXXXXXXXXXXXXXXXXXXVFKKWQHPAAPFHYDSGSRAPRAFVPV 117
                                     VFKKWQHPAAPF+Y+S +  P  FVPV
Sbjct: 78  -------------------VAVEKTPVFKKWQHPAAPFYYESSTFVP-PFVPV 107

BLAST of Carg10953 vs. TAIR10
Match: AT4G14450.1 (unknown protein)

HSP 1 Score: 52.4 bits (124), Expect = 2.2e-07
Identity = 43/113 (38.05%), Postives = 54/113 (47.79%), Query Frame = 0

Query: 5   QRRPSGTAARKQQPSRLQRRAPASL--QISRSDWKVAIPLLSPLVSPSSPTEIQNWTADS 64
           QR  S  A+ ++Q S+LQRRAP+ +    S S+W VAIPLLSPL +PS           +
Sbjct: 24  QRTSSSAASNERQLSQLQRRAPSLMIKPTSFSNWNVAIPLLSPL-APSL----------T 83

Query: 65  GSIXXXXXXXXXXXXXXXXXXXXXXXXVFKKWQHPAAPFHYDSGSRAPRAFVP 116
            S                         VFKKWQHPA+PF Y+     P  FVP
Sbjct: 84  SSFDQSHVPPPQNKTEIPVEEEVKKTPVFKKWQHPASPFCYE-----PTTFVP 120

BLAST of Carg10953 vs. Swiss-Prot
Match: sp|Q6NN02|Y4445_ARATH (Uncharacterized protein At4g14450, chloroplastic OS=Arabidopsis thaliana OX=3702 GN=At4g14450 PE=2 SV=1)

HSP 1 Score: 52.4 bits (124), Expect = 4.0e-06
Identity = 43/113 (38.05%), Postives = 54/113 (47.79%), Query Frame = 0

Query: 5   QRRPSGTAARKQQPSRLQRRAPASL--QISRSDWKVAIPLLSPLVSPSSPTEIQNWTADS 64
           QR  S  A+ ++Q S+LQRRAP+ +    S S+W VAIPLLSPL +PS           +
Sbjct: 24  QRTSSSAASNERQLSQLQRRAPSLMIKPTSFSNWNVAIPLLSPL-APSL----------T 83

Query: 65  GSIXXXXXXXXXXXXXXXXXXXXXXXXVFKKWQHPAAPFHYDSGSRAPRAFVP 116
            S                         VFKKWQHPA+PF Y+     P  FVP
Sbjct: 84  SSFDQSHVPPPQNKTEIPVEEEVKKTPVFKKWQHPASPFCYE-----PTTFVP 120

BLAST of Carg10953 vs. TrEMBL
Match: tr|A0A1S3CDB1|A0A1S3CDB1_CUCME (uncharacterized protein At4g14450, chloroplastic-like OS=Cucumis melo OX=3656 GN=LOC103499403 PE=4 SV=1)

HSP 1 Score: 125.2 bits (313), Expect = 9.8e-26
Identity = 97/128 (75.78%), Postives = 100/128 (78.12%), Query Frame = 0

Query: 1   MAESQRRPSGTAAR-KQQPSRLQRRAPASLQISRSDWKVAIPLLSPLVSPSSPTEIQNWT 60
           MA+S RR S T  R  QQPSRLQRRAPASLQI+RSDWKVAIPLLSPLVSPSSP +IQNWT
Sbjct: 1   MADSHRRTSPTTTRHPQQPSRLQRRAPASLQINRSDWKVAIPLLSPLVSPSSPKDIQNWT 60

Query: 61  ADS-----------GSIXXXXXXXXXXXXXXXXXXXXXXXXVFKKWQHPAAPFHYDSGSR 117
            DS              XXXXXXXXXXXXXXXXXXXXX   VFKKWQHPAAPFHYDSG R
Sbjct: 61  PDSREXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXKAPVFKKWQHPAAPFHYDSGPR 120

BLAST of Carg10953 vs. TrEMBL
Match: tr|A0A0A0LLJ8|A0A0A0LLJ8_CUCSA (Uncharacterized protein OS=Cucumis sativus OX=3659 GN=Csa_2G190740 PE=4 SV=1)

HSP 1 Score: 104.4 bits (259), Expect = 1.8e-19
Identity = 89/123 (72.36%), Postives = 95/123 (77.24%), Query Frame = 0

Query: 1   MAESQRRPSGTAARKQQPSRLQRRAPASLQISRSDWKVAIPLLSPLVSP-SSPTEIQNW- 60
           MA+S   P+  AA    PSRLQRRAPASLQI+RSDWKVAIPLLSPLVSP SSP +I +W 
Sbjct: 1   MADS-HPPTSPAA---TPSRLQRRAPASLQINRSDWKVAIPLLSPLVSPSSSPKDIHSWS 60

Query: 61  TADS-----GSIXXXXXXXXXXXXXXXXXXXXXXXXVFKKWQHPAAPFHYDSGSRAPRAF 117
           T DS        XXXXXXXXXXXXXXXXXXX     VFKKWQHPAAPFHYDSG+RAPR F
Sbjct: 61  TPDSRQXXXXXXXXXXXXXXXXXXXXXXXXXPEKAPVFKKWQHPAAPFHYDSGARAPR-F 118

BLAST of Carg10953 vs. TrEMBL
Match: tr|A0A1Q3CQ66|A0A1Q3CQ66_CEPFO (Uncharacterized protein OS=Cephalotus follicularis OX=3775 GN=CFOL_v3_25829 PE=4 SV=1)

HSP 1 Score: 78.6 bits (192), Expect = 1.0e-11
Identity = 58/118 (49.15%), Postives = 65/118 (55.08%), Query Frame = 0

Query: 1   MAESQRRPSGTAARKQQPSRLQRRAPASLQISR-SDWKVAIPLLSPL-VSPSSPTEIQNW 60
           MAE+QR  S    ++   SRLQRRAPASLQIS  S W VAIPLLSPL  SPSSP  I N 
Sbjct: 1   MAETQRNKSANGGQRLS-SRLQRRAPASLQISPVSTWNVAIPLLSPLATSPSSPKMINNR 60

Query: 61  TADSGSIXXXXXXXXXXXXXXXXXXXXXXXXVFKKWQHPAAPFHYDSGSRAPRAFVPV 117
           TA+   +                        VFKKWQHPAAPF Y+     P +FVPV
Sbjct: 61  TAE--MLSQEQHQQRHSISNNKNHVAEPEKPVFKKWQHPAAPFCYEPAPLRP-SFVPV 114

BLAST of Carg10953 vs. TrEMBL
Match: tr|A0A2I4GEJ1|A0A2I4GEJ1_9ROSI (uncharacterized protein At4g14450, chloroplastic-like OS=Juglans regia OX=51240 GN=LOC109007194 PE=4 SV=1)

HSP 1 Score: 78.2 bits (191), Expect = 1.4e-11
Identity = 58/120 (48.33%), Postives = 66/120 (55.00%), Query Frame = 0

Query: 1   MAESQR-RPSGTAARKQQPSRLQRRAPASLQIS--RSDWKVAIPLLSPL-VSPSSPTEIQ 60
           MA+SQR + S   A ++Q SRLQRRAPASLQIS   S W VAIPLLSPL  SP+SP  + 
Sbjct: 1   MADSQRSKSSACVANRRQKSRLQRRAPASLQISTPASTWNVAIPLLSPLAASPTSPKLVT 60

Query: 61  NWTADSGSIXXXXXXXXXXXXXXXXXXXXXXXXVFKKWQHPAAPFHYDSGSRAPRAFVPV 117
           + T D  S                          FKKWQHPAAPF Y+   R  R FVPV
Sbjct: 61  DRTVDMRS----------REESRQQCVEPEKLVSFKKWQHPAAPFCYEPAPRV-RPFVPV 109

BLAST of Carg10953 vs. TrEMBL
Match: tr|A0A2N9IRN2|A0A2N9IRN2_FAGSY (Uncharacterized protein OS=Fagus sylvatica OX=28930 GN=FSB_LOCUS54732 PE=4 SV=1)

HSP 1 Score: 77.4 bits (189), Expect = 2.3e-11
Identity = 56/119 (47.06%), Postives = 59/119 (49.58%), Query Frame = 0

Query: 1   MAESQRRPSGTAARKQQPSRLQRRAPASLQISRSD--WKVAIPLLSPL-VSPSSPTEIQN 60
           M+ESQR  SG   R QQPSRLQRRAPASLQIS     W VAIPLLSPL  SP+SP     
Sbjct: 1   MSESQRNKSGIGNRSQQPSRLQRRAPASLQISTPSPAWNVAIPLLSPLAASPTSP----- 60

Query: 61  WTADSGSIXXXXXXXXXXXXXXXXXXXXXXXXVFKKWQHPAAPFHYDSGSRAPRAFVPV 117
                                            FKKWQHPAAPF Y    R  R F+PV
Sbjct: 61  ----------KLGIDEPRQLQQPQIVTEPEKVAFKKWQHPAAPFSYGQAPRV-RPFLPV 103

The following BLAST results are available for this feature:
Match NameE-valueIdentityDescription
XP_022930471.15.2e-3997.41uncharacterized protein At4g14450, chloroplastic-like [Cucurbita moschata][more]
XP_023515028.11.3e-3793.97uncharacterized protein At4g14450, chloroplastic-like [Cucurbita pepo subsp. pep... [more]
XP_023000559.11.7e-3797.41uncharacterized protein At4g14450, chloroplastic-like [Cucurbita maxima][more]
XP_022138670.11.1e-2564.96uncharacterized protein At4g14450, chloroplastic-like [Momordica charantia][more]
XP_008460625.21.5e-2575.78PREDICTED: uncharacterized protein At4g14450, chloroplastic-like [Cucumis melo][more]
Match NameE-valueIdentityDescription
AT1G04330.12.4e-0937.19unknown protein[more]
AT3G23170.14.5e-0838.05unknown protein[more]
AT4G14450.12.2e-0738.05unknown protein[more]
Match NameE-valueIdentityDescription
sp|Q6NN02|Y4445_ARATH4.0e-0638.05Uncharacterized protein At4g14450, chloroplastic OS=Arabidopsis thaliana OX=3702... [more]
Match NameE-valueIdentityDescription
tr|A0A1S3CDB1|A0A1S3CDB1_CUCME9.8e-2675.78uncharacterized protein At4g14450, chloroplastic-like OS=Cucumis melo OX=3656 GN... [more]
tr|A0A0A0LLJ8|A0A0A0LLJ8_CUCSA1.8e-1972.36Uncharacterized protein OS=Cucumis sativus OX=3659 GN=Csa_2G190740 PE=4 SV=1[more]
tr|A0A1Q3CQ66|A0A1Q3CQ66_CEPFO1.0e-1149.15Uncharacterized protein OS=Cephalotus follicularis OX=3775 GN=CFOL_v3_25829 PE=4... [more]
tr|A0A2I4GEJ1|A0A2I4GEJ1_9ROSI1.4e-1148.33uncharacterized protein At4g14450, chloroplastic-like OS=Juglans regia OX=51240 ... [more]
tr|A0A2N9IRN2|A0A2N9IRN2_FAGSY2.3e-1147.06Uncharacterized protein OS=Fagus sylvatica OX=28930 GN=FSB_LOCUS54732 PE=4 SV=1[more]
GO Assignments
This gene is annotated with the following GO terms.
Category Term Accession Term Name
biological_process GO:0008150 biological_process
cellular_component GO:0005575 cellular_component
molecular_function GO:0003674 molecular_function

The following mRNA feature(s) are a part of this gene:

Feature NameUnique NameType
Carg10953-RACarg10953-RAmRNA


Analysis Name: InterPro Annotations of silver-seed gourd
Date Performed: 2019-03-07
IPR TermIPR DescriptionSourceSource TermSource DescriptionAlignment
NoneNo IPR availableMOBIDB_LITEmobidb-litedisorder_predictioncoord: 48..67
NoneNo IPR availableMOBIDB_LITEmobidb-litedisorder_predictioncoord: 48..116
NoneNo IPR availablePANTHERPTHR33912FAMILY NOT NAMEDcoord: 3..108
NoneNo IPR availablePANTHERPTHR33912:SF2F22G5.17coord: 3..108

The following gene(s) are paralogous to this gene:
GeneParalogueOrganismBlock
Carg10953Carg10077Silver-seed gourdcarcarB267