ClCG06G006840 (gene) Watermelon (Charleston Gray) | Cucurbit Genomics Database (CuGenDB)

Overview


Name	ClCG06G006840
Type	gene
Organism	Citrullus lanatus (Watermelon (Charleston Gray))
Description	ATBET12, putative
Location	CG_Chr06 : 8014900 .. 8019864 (-)

Genome Viewer

Gene Expression

Sequences

The following sequences are available for this feature:

Gene sequence (with intron)

Legend: CDS

Hold the cursor over a type above to highlight its positions in the sequence below.

ATGGCCTCTTCCTCATCCTTCTTTTATCTTCTTCCCCCAAATCCCCTTACTCTTCCCTTATGGCGGCCTCACACACACGAATCTCCCAAAGGCATCGAAAATTGGAAGCCCGATTCCAGAGAAGCTTCTTCCACCTCTTCTCACCACCATCATCATAAAGAATCGGAGCCGGAGAAGCCGCAGGTTTCTAAGAAATGGCAGCATCCGGCGGCTCCTTTTCATTACGATTGCGTTTAGATTTGCAGCTTGTTTACAAAACAAGGCTTTAAGGTTACAATAAAAATGAAGAAGTTTGGTTGTTTTGAGAGAAAGATGGGGTGTGTAAGGGGGATTTGGAAAATAGAGAAAAGAGAAAAAGAAAGATAAGGAAGACCCACATCGGAAAGGGGGAAGGAGAAAGAGAGAGGGAGTTAGTATAAAAGAGTGCTGAAAGGAACTTAGAAAATTAAAAGGGTCGGTTGGCTAAATATGCCACGCTCGCCCAACATTGTGGTGAGTGCTGTATGGCAATCTAGACATATGGCCGACATAATTTCTGGAAACTAAAATAGGGTTGGCCCAATTGGCCGACCCTCCTACTCTCACTTTTCAACTTTTTTTTCATTTCTATTCCAACTTTTTTTTTTTTTAAATCTAATTTATAAAAAAAATTATTTTTATTAAAAACTAAAATTCTAATGACACAATATAATTTTGAAAAATCATTAATTAATTAGATAATTAAAAAACATTGGAATAATACTGCTTTTTATAAAGTAGATATGAACAAGAAAAAGATTTAAAATTTCAAAATTCAAAATATAGCATATATTTAGTTTCTAGCTTAAATGTGATAAGGGTCGCAAAATGTAGGATAAAATTGTTTTTTGAATTTAAATCTGAAAAGAGAAAATACAGTTATGGTGTATGTGGACATAATCTTGAGGGCATTTTGGGAATATTGAATGATGAAAACATTTTTAGGGGACGGTATCTTAATTTAAAATAAGGCATATAAATTTAAAGTATCTCAAATATGATAAAATAAAATTAAGGTAATTTGAATTTCAAAAAATAAAAAATAAGCAAAATTCAGACCCAGTTGTTGAAATATAGTTAGTTGCTATTTTTTCTAATAAAGTTTCATTTTTGCTATTATTTGAGATGAAACCTTAAATCTTACTAATTGGTATGGTAAAAATGGGTAAAAAAAAATATAGTCTTAAATTGTAGTCCACTTTAGAATTCAATACAACGCCCAATAATTGTGTCTCATCACCATCACGTGGTAGCTTTTAATGTTAATTTTGATGAAGTGAGCTTAAAAGATGGTTCAAACTTCAAAAACCATGGCCTAATCGGATAAGCAATAAAATTGGTAATCTCAATTATCTTTATATATATTGTTTCATTAACGAATTAAAAAGTCACGTAAATGTATGTTGCTAAACAAATAAAAACTCAGCCCACTCTTTTCGAAAATTCATTTCCTTTTAGTGCTAATTACATTGAGAAACCAATAATTTTATGACATCTTAAAAAAAAAAAATTAAGTTAAATTTATTCATTAAATTTTAAGTCTATGTTGAATTTTTAAAAAATGCCTAATAAAATTTTAATTTCTTTGTTTATGTACCATAAGTCCTAAATTTAAAATGGATGTAGTTAGTAATTAAACTTTTCAATTTTGTGTCTAATAGATTCTTGATCTATTTAACATTTTTTTTAAAGGTACACACCTACTAGATGCAAAATTGAAAATTTGAGGTTTCATTAGACATAAAATTAACTTCTACACTTAATTAATCAACTAATTTAAAAGACATAAAATTAACTTCTACACTTAATTAATCAACTAATTTAAAAACCAAAAAGAGCATAGCTCAACTAGCAACCACAAAGTTTGTAGTTCAAATCGTCCGAAATCTAAGTTAAGTTTGTATTTGACATTATTTAATTATTTATGGTTTTTATGATTATGACTCTAGGGTTTAGAGAAGTGTTCTATATAAATTCTTTAAACCTAAAGGCACCAATTGGTTTTGTAATTTGTAGCCTTCTCTCTAATAAAATTAATATCTCTTTGTCTCATAGACATAGTTAACACACTGTTAGTAACCCACATAGATCTGCGTGTTGATTCTCTATTCTTTTACGTTTTCTATATTCCTTAATTGTCTATTTTGTAGTAATAATAGTGTTAAAAAAAAAAATTCTAAGAAATGTATATTTTAAACAAACTTACTCATAATTTGAAAGTTCAAATTAGTCTATTTTAAATTAAAAGGTAAATTTGATAAAATTTGAATTTCATCGATTTGAATTTGAATCAATTTTCATACTCTATTCTAACAATTACTTTTATTAAATTTGGACATATACGTCACCTATATCCTAAATATGTTAAAGAAATGTAAAAACCAAATTTAAATTATCTAGAGTTGATCTCGAATTAATAGCATTTGTTGCATTCATTAATTCCATATCAAATTTGAGTGGAAGTAAAAATTAAAAGATATAGCAAATAATGCAATATATATATATATTAAAAATATTTCACACGTACTTCATAACTCTAAATTAAACAATTTTACATTCCAAACAAACATAGACTTTTTAAATACTCTCCAAACTTCATAAATTTAATGTCCCAAATGTTTCCTTAAAAATTAGGGACCATATAGAATATTTTACTTTAATTTCATTTTCTTCTCAAATTTATTCTTGACATGTGACATTGCGATCAAATAAACATCCACCATTCACGTTTAATCTTATCTCTACTTTTTCAAAGGTTCACCTTTGACCACGTACTTTAAAATTTAACGTCATACCGCCGCAACGTTGTTACGGACCAATCAAGTTGATGCCACATCGGATTCCTACTTGTCACTGTCATACTCTCATGCAACCCTTGTCTGCCACGTGTACAATCTGTCTCCTATGGCATCAAATCTCATGGCAATTATTATTTGAGATAAATTAGTGGAGCTGGATTAACTCTAATTTAGAAAAGGAAAAAGAACAGGAGAATATTGAGTAAATTTTTTTCTTAAAAAAAAATAATAATAATAATAAAAAAATTAAAAACAGGGGGAGGTTTGAATTTTAGAATGGGGGTTTGGAATTTTCATTAACCTTTTCAACCATAAAATAAAATTGGTCAAAAGCAAAGATTGGAATCCCCTTGTATTTTATATTTGCACCACATTTTATTCCTTTTAAATCAAATACCAACCATACCAAAACAATAACATCAAGTTAAGAATATCTACATGTTTCTAGATTTTTCCACTCTCATCAACACATCCACATGGGATTTTTATTTCAAATTTTTCATTCTCTCAAGGATTTTTTTTTCTTTCTAGAAGAGTTCAATTTTTAAAATTAAGTTGGATTTTAAATTCAATATTATGTGGGTGGTAAGATTTTCAATTTAAAAATTAGACATTTTAAAATTTTGAATCCAAAATTGTTACACACTTTTTATTGTTTGTTGAGGAACTTATTAGACACACAATTAAAACTTTAATGACACATTAGACATTTTTTAAACTTTAATGACCCATCAAACCTACAATTTTTGGAAATAAATTTATATAATTTTGCTATATCTTCTCTCTAAACTCAATAAATAAAGCCAAAATTACAAGTTTAGTCTTTAAACTCTTAAGTTCGTGGCAATTTGTATATTTAGTCAATGAACCTTAAACTTAGACGCTAAATTACAAGTTTTGTCAAAATTATATTCAATATATCAATTATTCTTTAAAAAACTTAAATATAATAAGAATTTATTAGACACAAAATTAAGAGCTTAGCGGCCTAGTTACTTTTTTATATTCTAAGAGCCTTACACAAACTTCAAAGTTAAAAGACCATATCGGTAATTTAACAAAAAAAATAAAATAAAAATAAGGTGTTTAATTTTGGTTTTTTGGTTTTGTGGTTGGTCTTACTAGTTGGAATAATATTTGGGTACATCTTAGGATTAGGGGTGTGCAAGGTTCGGTTCGGTCCGGTTTTGGGCCGAACCATGAACCAAACTGAAGTTATTGGTTCACAATGAAGAAGAACCGCTGAAAATCGGTTACACTGGTTCGTTCAAGTGGTTCAGTTAAACACGAGTGCGAGAGCGAGAGAGAGAGTCTTGCTCTTGCTTCCTTTCCTCACTCACAATTACTCTTCTCTCTCTCACACAATCACTCTTATCTCTCAGACTGGTTGAGTTCGATTTTGTATAATTTTTTAGGATAATAAATCAATAACCAAATTGAATGGTTCAGTTTTGGTTTTCCGTGAATCGGTAGTTCTCCATTTTTCAAAAAAATAGACCCATTCATTATTCGTTAAATATTAAGTAGGACGACAAGTAGTATTGGAAGCTCCATTCATTATTTGTTAAAAAGAAATGATATGAGATCTATAAATTAAAATAATATATGATTAAGTGACGTGTAAAATGGTAAATGTTGGTAAATATATTATGGGGGCGTGTGACAACTATGGGCCAGTTATTGGAGGCCCCAACTAGAGGTGAGCACTAAAAATGGTGCTTCCCACATGCCTCCTTTTGTCCCCTATAATTACCCCTTTCCCTCTTCCTCATCCTTCTTATCTTCTTCCCTCAAATCCCCTTTCTCTTCCCTTATGGCCGACTCACACAGACGAACCTCCGCCCCCGTAAGCCGCCATCCTCAGCAGCCAAGCCGCCTTCAACGCCGCGCTCCGGCGTCCCTGCAAATCAATCGCTCCGATTGGAAGGTCGCCATCCCTCTCTTGTCCCCCCTCGTCTCTCCTTCCTCTCCCAAAGACATCCAAAATTGGAAGCCCGATTCCAGAGAAGCTTCTTCCACCTCTTCTCACCACCATCATCATAAAGAATCGGAGCCAGAGAAGCCGCCGGTTTTTAAGAAATGGCAGCATCCGGCAGCTCCTTTTCATTACGATTCCGGTCCTAGGGCTCCCAGATTCGTACCCGTTTAG

mRNA sequence

ATGGCCTCTTCCTCATCCTTCTTTTATCTTCTTCCCCCAAATCCCCTTACTCTTCCCTTATGGCGGCCTCACACACACGAATCTCCCAAAGGCATCGAAAATTGGAAGCCCGATTCCAGAGAAGCTTCTTCCACCTCTTCTCACCACCATCATCATAAAGAATCGGAGCCGGAGAAGCCGCAGGTTTCTAAGAAATGGCAGCATCCGGCGGCTCCTTTTCATTACGATTGCCAGCCAAGCCGCCTTCAACGCCGCGCTCCGGCGTCCCTGCAAATCAATCGCTCCGATTGGAAGGTCGCCATCCCTCTCTTGTCCCCCCTCGTCTCTCCTTCCTCTCCCAAAGACATCCAAAATTGGAAGCCCGATTCCAGAGAAGCTTCTTCCACCTCTTCTCACCACCATCATCATAAAGAATCGGAGCCAGAGAAGCCGCCGGTTTTTAAGAAATGGCAGCATCCGGCAGCTCCTTTTCATTACGATTCCGGTCCTAGGGCTCCCAGATTCGTACCCGTTTAG

Coding sequence (CDS)

ATGGCCTCTTCCTCATCCTTCTTTTATCTTCTTCCCCCAAATCCCCTTACTCTTCCCTTATGGCGGCCTCACACACACGAATCTCCCAAAGGCATCGAAAATTGGAAGCCCGATTCCAGAGAAGCTTCTTCCACCTCTTCTCACCACCATCATCATAAAGAATCGGAGCCGGAGAAGCCGCAGGTTTCTAAGAAATGGCAGCATCCGGCGGCTCCTTTTCATTACGATTGCCAGCCAAGCCGCCTTCAACGCCGCGCTCCGGCGTCCCTGCAAATCAATCGCTCCGATTGGAAGGTCGCCATCCCTCTCTTGTCCCCCCTCGTCTCTCCTTCCTCTCCCAAAGACATCCAAAATTGGAAGCCCGATTCCAGAGAAGCTTCTTCCACCTCTTCTCACCACCATCATCATAAAGAATCGGAGCCAGAGAAGCCGCCGGTTTTTAAGAAATGGCAGCATCCGGCAGCTCCTTTTCATTACGATTCCGGTCCTAGGGCTCCCAGATTCGTACCCGTTTAG

Protein sequence

MASSSSFFYLLPPNPLTLPLWRPHTHESPKGIENWKPDSREASSTSSHHHHHKESEPEKPQVSKKWQHPAAPFHYDCQPSRLQRRAPASLQINRSDWKVAIPLLSPLVSPSSPKDIQNWKPDSREASSTSSHHHHHKESEPEKPPVFKKWQHPAAPFHYDSGPRAPRFVPV

Homology

[Close]

BLAST of ClCG06G006840 vs. Swiss-Prot
Match: Y4445_ARATH (Uncharacterized protein At4g14450, chloroplastic OS=Arabidopsis thaliana GN=At4g14450 PE=2 SV=1)

HSP 1 Score: 66.6 bits (161), Expect = 3.0e-10
Identity = 40/96 (41.67%), Postives = 51/96 (53.12%), Query Frame = 1


Query: 78  QPSRLQRRAPASL--QINRSDWKVAIPLLSPLVSPSSPKDIQNWKPDSREASSTSSHHHH 137
           Q S+LQRRAP+ +    + S+W VAIPLLSPL    +    Q+  P  +  +        
Sbjct: 36  QLSQLQRRAPSLMIKPTSFSNWNVAIPLLSPLAPSLTSSFDQSHVPPPQNKTEIPV---- 95

Query: 138 HKESEPEKPPVFKKWQHPAAPFHYDSGPRAPRFVPV 172
             E E +K PVFKKWQHPA+PF Y+     P F+ V
Sbjct: 96  --EEEVKKTPVFKKWQHPASPFCYEPTTFVPPFIQV 125

HSP 2 Score: 35.0 bits (79), Expect = 9.5e-01
Identity = 14/23 (60.87%), Postives = 15/23 (65.22%), Query Frame = 1


Query: 54  ESEPEKPQVSKKWQHPAAPFHYD 77
           E E +K  V KKWQHPA+PF Y+
Sbjct: 92  EEEVKKTPVFKKWQHPASPFCYE 114

[Close]

BLAST of ClCG06G006840 vs. TrEMBL
Match: A0A0A0LLJ8_CUCSA (Uncharacterized protein OS=Cucumis sativus GN=Csa_2G190740 PE=4 SV=1)

HSP 1 Score: 167.2 bits (422), Expect = 1.8e-38
Identity = 84/105 (80.00%), Postives = 88/105 (83.81%), Query Frame = 1


Query: 79  PSRLQRRAPASLQINRSDWKVAIPLLSPLVSPSS-PKDIQNWK-PDSREASSTSS----- 138
           PSRLQRRAPASLQINRSDWKVAIPLLSPLVSPSS PKDI +W  PDSR+ SST+S     
Sbjct: 14  PSRLQRRAPASLQINRSDWKVAIPLLSPLVSPSSSPKDIHSWSTPDSRQPSSTTSSSSHH 73

Query: 139 -----HHHHHKESEPEKPPVFKKWQHPAAPFHYDSGPRAPRFVPV 172
                HHHHHKES+PEK PVFKKWQHPAAPFHYDSG RAPRFVPV
Sbjct: 74  HHLLHHHHHHKESDPEKAPVFKKWQHPAAPFHYDSGARAPRFVPV 118

[Close]

BLAST of ClCG06G006840 vs. TrEMBL
Match: A0A0A0LLJ8_CUCSA (Uncharacterized protein OS=Cucumis sativus GN=Csa_2G190740 PE=4 SV=1)

HSP 1 Score: 83.2 bits (204), Expect = 3.4e-13
Identity = 43/73 (58.90%), Postives = 48/73 (65.75%), Query Frame = 1


Query: 15  PLTLPLWRPHTHESPKGIENWK-PDSREASSTSS----------HHHHHKESEPEKPQVS 74
           PL  PL  P +  SPK I +W  PDSR+ SST+S          HHHHHKES+PEK  V 
Sbjct: 37  PLLSPLVSPSS--SPKDIHSWSTPDSRQPSSTTSSSSHHHHLLHHHHHHKESDPEKAPVF 96

Query: 75  KKWQHPAAPFHYD 77
           KKWQHPAAPFHYD
Sbjct: 97  KKWQHPAAPFHYD 107

HSP 2 Score: 95.9 bits (237), Expect = 5.1e-17
Identity = 56/100 (56.00%), Postives = 62/100 (62.00%), Query Frame = 1


Query: 78  QPSRLQRRAP--ASLQINR-SDWKVAIPLLSPLVSPSSPKDIQNWKPDSREASSTSSHHH 137
           QPSRLQRRAP  +SLQINR  DW +AIPLLSPLVSP  P D       SR+         
Sbjct: 15  QPSRLQRRAPPPSSLQINRVPDWNIAIPLLSPLVSPDCPIDTTK----SRDQHQQKEMPR 74

Query: 138 HHKESEPEKPP---VFKKWQHPAAPFHYDSGPRAPRFVPV 172
           HH+ +E EK     VFKKWQHPAAPF Y+  P    FVPV
Sbjct: 75  HHQGAEAEKSAPAMVFKKWQHPAAPFCYEPAPFVSAFVPV 110

[Close]

BLAST of ClCG06G006840 vs. TrEMBL
Match: M5XT20_PRUPE (Uncharacterized protein OS=Prunus persica GN=PRUPE_ppa013660mg PE=4 SV=1)

HSP 1 Score: 41.6 bits (96), Expect = 1.1e+00
Identity = 26/66 (39.39%), Postives = 31/66 (46.97%), Query Frame = 1


Query: 15  PLTLPLWRPHTHESPKGIENWKPDSREASSTSSHHHHHKESEPEKP-QVSKKWQHPAAPF 74
           PL  PL  P   + P  I+  K   +        HH   E+E   P  V KKWQHPAAPF
Sbjct: 42  PLLSPLVSP---DCP--IDTTKSRDQHQQKEMPRHHQGAEAEKSAPAMVFKKWQHPAAPF 101

Query: 75  HYDCQP 80
            Y+  P
Sbjct: 102 CYEPAP 102

HSP 2 Score: 94.4 bits (233), Expect = 1.5e-16
Identity = 54/95 (56.84%), Postives = 59/95 (62.11%), Query Frame = 1


Query: 78  QPSRLQRRAPASLQINR-SDWKVAIPLLSPLVSPSSPKDIQNWKPDSREASSTSSHHHHH 137
           QPSRLQRRAPASLQI+  S W VAIPLLSPL S  SP  I     + RE           
Sbjct: 18  QPSRLQRRAPASLQISPVSSWNVAIPLLSPLAS--SPPSIDRRTVEKREEPPRQEQQRQS 77

Query: 138 KESEPEKPPVFKKWQHPAAPFHYDSGPRAPRFVPV 172
           + +EPEK  VFK WQHPAAPF Y+  P  P FVPV
Sbjct: 78  QTTEPEKI-VFKMWQHPAAPFCYEPAPLVPSFVPV 109

[Close]

BLAST of ClCG06G006840 vs. TrEMBL
Match: A0A0V0GUS0_SOLCH (Putative ovule protein OS=Solanum chacoense PE=4 SV=1)

HSP 1 Score: 92.8 bits (229), Expect = 4.3e-16
Identity = 52/88 (59.09%), Postives = 65/88 (73.86%), Query Frame = 1


Query: 79  PSRLQRRAPASLQINR-SDWKVAIPLLSPLV-SPSSPKDIQNWKPDSREASSTSSHHHHH 138
           PSRLQRRAPAS+QINR +DW VAIPLLSPL+ SP+SP D  N K      S+++S+  + 
Sbjct: 15  PSRLQRRAPASIQINRPTDWNVAIPLLSPLITSPASP-DAGNLKSVINRLSNSNSNSSNS 74

Query: 139 KESEPEKP-PVFKKWQHPAAPFHYDSGP 164
           K+ E +K  PVFKKWQHPAAPF ++  P
Sbjct: 75  KKEEVKKELPVFKKWQHPAAPFCHEPAP 101

[Close]

BLAST of ClCG06G006840 vs. TrEMBL
Match: A0A0V0GUS0_SOLCH (Putative ovule protein OS=Solanum chacoense PE=4 SV=1)

HSP 1 Score: 37.0 bits (84), Expect = 2.8e+01
Identity = 17/41 (41.46%), Postives = 26/41 (63.41%), Query Frame = 1


Query: 39  SREASSTSSHHHHHKESEPEKPQVSKKWQHPAAPFHYDCQP 80
           +R ++S S+  +  KE   ++  V KKWQHPAAPF ++  P
Sbjct: 61  NRLSNSNSNSSNSKKEEVKKELPVFKKWQHPAAPFCHEPAP 101

HSP 2 Score: 92.0 bits (227), Expect = 7.3e-16
Identity = 53/92 (57.61%), Postives = 65/92 (70.65%), Query Frame = 1


Query: 78  QPSRLQRRAPASLQINR-SDWKVAIPLLSPLV-SPSSPKDIQNWKPDSREASSTSSHHHH 137
           QPSRLQRRAPAS+Q++R +DW VAIPLLSPL+ SP+SP+   N K  +  A S+S H   
Sbjct: 16  QPSRLQRRAPASIQVDRVTDWNVAIPLLSPLITSPTSPES-DNLKA-AINAFSSSVHKEE 75

Query: 138 HKESEPEKP-PVFKKWQHPAAPFHYDSGPRAP 167
            K+   EKP  VFKKWQHPA+PF Y+  P  P
Sbjct: 76  VKKEHTEKPVMVFKKWQHPASPFCYEPAPLVP 105

[Close]

BLAST of ClCG06G006840 vs. TAIR10
Match: AT1G04330.1 (AT1G04330.1 unknown protein)

HSP 1 Score: 77.8 bits (190), Expect = 7.2e-15
Identity = 45/86 (52.33%), Postives = 48/86 (55.81%), Query Frame = 1


Query: 80  SRLQRRAPASLQIN--RSDWKVAIPLLSPLVSPSSPKDIQNWKPDSREASSTSSHHHHHK 139
           SRLQRRAP  L+IN   ++WKVAIPLLSP  SP          P    A          K
Sbjct: 17  SRLQRRAPPPLKINPCEANWKVAIPLLSPTESP----------PQKPPAVMKREEQRWGK 76

Query: 140 ESEPEKPPVFKKWQHPAAPFHYDSGP 164
           E+E  KPPVFKKWQHPAAPF+Y   P
Sbjct: 77  EAE--KPPVFKKWQHPAAPFYYQPAP 90

HSP 2 Score: 43.5 bits (101), Expect = 1.5e-04
Identity = 19/28 (67.86%), Postives = 18/28 (64.29%), Query Frame = 1


Query: 56 EPEKPQVSKKWQHPAAPFHYDCQPSRLQ 84
          E EKP V KKWQHPAAPF+Y   PS  Q
Sbjct: 67 EAEKPPVFKKWQHPAAPFYYQPAPSSNQ 94

[Close]

BLAST of ClCG06G006840 vs. TAIR10
Match: AT3G23170.1 (AT3G23170.1 unknown protein)

HSP 1 Score: 72.4 bits (176), Expect = 3.0e-13
Identity = 48/100 (48.00%), Postives = 56/100 (56.00%), Query Frame = 1


Query: 78  QPSRLQRRAPASLQINRS----DWKVAIPLLSPL-VSP-SSPKDIQNWKPDSREASSTSS 137
           QPSRL +R PA   +  +    +W  AIPLLSPL +SP SSP D    +P   +  ST+ 
Sbjct: 20  QPSRLLKRPPALKIVPATPAANNWNTAIPLLSPLALSPESSPVD----QPPVEKNQSTAV 79

Query: 138 HHHHHKESEPEKPPVFKKWQHPAAPFHYDSGPRAPRFVPV 172
                     EK PVFKKWQHPAAPF+Y+S    P FVPV
Sbjct: 80  --------AVEKTPVFKKWQHPAAPFYYESSTFVPPFVPV 107

HSP 2 Score: 36.6 bits (83), Expect = 1.8e-02
Identity = 14/19 (73.68%), Postives = 14/19 (73.68%), Query Frame = 1


Query: 58 EKPQVSKKWQHPAAPFHYD 77
          EK  V KKWQHPAAPF+Y+
Sbjct: 78 EKTPVFKKWQHPAAPFYYE 96

[Close]

BLAST of ClCG06G006840 vs. TAIR10
Match: AT4G14450.1 (AT4G14450.1 unknown protein)

HSP 1 Score: 66.6 bits (161), Expect = 1.7e-11
Identity = 40/96 (41.67%), Postives = 51/96 (53.12%), Query Frame = 1


Query: 78  QPSRLQRRAPASL--QINRSDWKVAIPLLSPLVSPSSPKDIQNWKPDSREASSTSSHHHH 137
           Q S+LQRRAP+ +    + S+W VAIPLLSPL    +    Q+  P  +  +        
Sbjct: 36  QLSQLQRRAPSLMIKPTSFSNWNVAIPLLSPLAPSLTSSFDQSHVPPPQNKTEIPV---- 95

Query: 138 HKESEPEKPPVFKKWQHPAAPFHYDSGPRAPRFVPV 172
             E E +K PVFKKWQHPA+PF Y+     P F+ V
Sbjct: 96  --EEEVKKTPVFKKWQHPASPFCYEPTTFVPPFIQV 125

HSP 2 Score: 35.0 bits (79), Expect = 5.4e-02
Identity = 14/23 (60.87%), Postives = 15/23 (65.22%), Query Frame = 1


Query: 54  ESEPEKPQVSKKWQHPAAPFHYD 77
           E E +K  V KKWQHPA+PF Y+
Sbjct: 92  EEEVKKTPVFKKWQHPASPFCYE 114

[Close]

BLAST of ClCG06G006840 vs. NCBI nr
Match: gi|659121369|ref|XP_008460625.1| (PREDICTED: uncharacterized protein At4g14450, chloroplastic-like [Cucumis melo])

HSP 1 Score: 177.2 bits (448), Expect = 2.5e-41
Identity = 89/110 (80.91%), Postives = 90/110 (81.82%), Query Frame = 1


Query: 78  QPSRLQRRAPASLQINRSDWKVAIPLLSPLVSPSSPKDIQNWKPDSREA------SSTSS 137
           QPSRLQRRAPASLQINRSDWKVAIPLLSPLVSPSSPKDIQNW PDSREA      SS+SS
Sbjct: 80  QPSRLQRRAPASLQINRSDWKVAIPLLSPLVSPSSPKDIQNWTPDSREASSASSSSSSSS 139

Query: 138 HHH----------HHKESEPEKPPVFKKWQHPAAPFHYDSGPRAPRFVPV 172
           HHH          HHKE E EK PVFKKWQHPAAPFHYDSGPRAPRFVPV
Sbjct: 140 HHHHHHHQHHQHQHHKEPEAEKAPVFKKWQHPAAPFHYDSGPRAPRFVPV 189

[Close]

BLAST of ClCG06G006840 vs. NCBI nr
Match: gi|659121369|ref|XP_008460625.1| (PREDICTED: uncharacterized protein At4g14450, chloroplastic-like [Cucumis melo])

HSP 1 Score: 83.6 bits (205), Expect = 3.7e-13
Identity = 46/81 (56.79%), Postives = 48/81 (59.26%), Query Frame = 1


Query: 15  PLTLPLWRPHTHESPKGIENWKPDSREASS------TSSHHHHH----------KESEPE 74
           PL  PL  P    SPK I+NW PDSREASS      +SSHHHHH          KE E E
Sbjct: 104 PLLSPLVSP---SSPKDIQNWTPDSREASSASSSSSSSSHHHHHHHQHHQHQHHKEPEAE 163

Query: 75  KPQVSKKWQHPAAPFHYDCQP 80
           K  V KKWQHPAAPFHYD  P
Sbjct: 164 KAPVFKKWQHPAAPFHYDSGP 181

HSP 2 Score: 167.2 bits (422), Expect = 2.6e-38
Identity = 84/105 (80.00%), Postives = 88/105 (83.81%), Query Frame = 1


Query: 79  PSRLQRRAPASLQINRSDWKVAIPLLSPLVSPSS-PKDIQNWK-PDSREASSTSS----- 138
           PSRLQRRAPASLQINRSDWKVAIPLLSPLVSPSS PKDI +W  PDSR+ SST+S     
Sbjct: 14  PSRLQRRAPASLQINRSDWKVAIPLLSPLVSPSSSPKDIHSWSTPDSRQPSSTTSSSSHH 73

Query: 139 -----HHHHHKESEPEKPPVFKKWQHPAAPFHYDSGPRAPRFVPV 172
                HHHHHKES+PEK PVFKKWQHPAAPFHYDSG RAPRFVPV
Sbjct: 74  HHLLHHHHHHKESDPEKAPVFKKWQHPAAPFHYDSGARAPRFVPV 118

[Close]

BLAST of ClCG06G006840 vs. NCBI nr
Match: gi|449449010|ref|XP_004142258.1| (PREDICTED: uncharacterized protein At4g14450, chloroplastic-like [Cucumis sativus])

HSP 1 Score: 83.2 bits (204), Expect = 4.9e-13
Identity = 43/73 (58.90%), Postives = 48/73 (65.75%), Query Frame = 1


Query: 15  PLTLPLWRPHTHESPKGIENWK-PDSREASSTSS----------HHHHHKESEPEKPQVS 74
           PL  PL  P +  SPK I +W  PDSR+ SST+S          HHHHHKES+PEK  V 
Sbjct: 37  PLLSPLVSPSS--SPKDIHSWSTPDSRQPSSTTSSSSHHHHLLHHHHHHKESDPEKAPVF 96

Query: 75  KKWQHPAAPFHYD 77
           KKWQHPAAPFHYD
Sbjct: 97  KKWQHPAAPFHYD 107

HSP 2 Score: 115.9 bits (289), Expect = 6.8e-23
Identity = 61/98 (62.24%), Postives = 69/98 (70.41%), Query Frame = 1


Query: 79  PSRLQRRAPASLQINR-SDWKVAIPLLSPLVSPSSPKDIQNWKPDSREASSTSSHHHHHK 138
           PSRLQRRAPASLQI+  SDW +AIPLLSPLVSP+SPK I+     + E  S   H HHH+
Sbjct: 17  PSRLQRRAPASLQISPVSDWNIAIPLLSPLVSPTSPKAIER----TVEIKSREEHRHHHQ 76

Query: 139 ESEPEKPP----VFKKWQHPAAPFHYDSGPRAPRFVPV 172
            +EPEKP      FKKWQHPAAPF YD+ P    FVPV
Sbjct: 77  SAEPEKPAATAVAFKKWQHPAAPFCYDNAPLIRPFVPV 110

[Close]

BLAST of ClCG06G006840 vs. NCBI nr
Match: gi|1009141024|ref|XP_015887969.1| (PREDICTED: uncharacterized protein At4g14450, chloroplastic [Ziziphus jujuba])

HSP 1 Score: 60.5 bits (145), Expect = 3.4e-06
Identity = 34/69 (49.28%), Postives = 38/69 (55.07%), Query Frame = 1


Query: 15  PLTLPLWRPHTHESPKGIENWKPDSREASSTSSHHHHHKESEPEKPQVS----KKWQHPA 74
           PL  PL  P    SPK IE     + E  S   H HHH+ +EPEKP  +    KKWQHPA
Sbjct: 41  PLLSPLVSP---TSPKAIER----TVEIKSREEHRHHHQSAEPEKPAATAVAFKKWQHPA 100

Query: 75  APFHYDCQP 80
           APF YD  P
Sbjct: 101 APFCYDNAP 102

HSP 2 Score: 100.1 bits (248), Expect = 3.9e-18
Identity = 58/96 (60.42%), Postives = 63/96 (65.62%), Query Frame = 1


Query: 78  QPSRLQRRAPASLQINRS-DWKVAIPLLSPLVSPSSPKDIQNWKPDSREASSTSSHHHHH 137
           QPSRLQ+RAP+SLQINRS  W VAIPLLSPL S   P+ I     D+R  S   SH H  
Sbjct: 9   QPSRLQKRAPSSLQINRSLQWNVAIPLLSPLASSPPPQPI-----DTRP-SQDPSHRHQG 68

Query: 138 KESEPEKPPV-FKKWQHPAAPFHYDSGPRAPRFVPV 172
             +EPEK  V FK WQHPAAPF YD  P  P FVPV
Sbjct: 69  TAAEPEKVVVTFKNWQHPAAPFCYDPAPIVPPFVPV 98

[Close]

BLAST of ClCG06G006840 vs. NCBI nr
Match: gi|502115887|ref|XP_004495310.1| (PREDICTED: uncharacterized protein At4g14450, chloroplastic [Cicer arietinum])

HSP 1 Score: 45.4 bits (106), Expect = 1.1e-01
Identity = 26/65 (40.00%), Postives = 31/65 (47.69%), Query Frame = 1


Query: 16 LTLPLWRPHTHESPKGIENWKPDSREASSTSSHHHHHKESEPEKPQVS-KKWQHPAAPFH 75
          + +PL  P     P      +P     S   SH H    +EPEK  V+ K WQHPAAPF 
Sbjct: 31 VAIPLLSPLASSPPP-----QPIDTRPSQDPSHRHQGTAAEPEKVVVTFKNWQHPAAPFC 90

Query: 76 YDCQP 80
          YD  P
Sbjct: 91 YDPAP 90

HSP 2 Score: 96.3 bits (238), Expect = 5.6e-17
Identity = 54/98 (55.10%), Postives = 65/98 (66.33%), Query Frame = 1


Query: 78  QPSRLQRRAP--ASLQINR-SDWKVAIPLLSPLVSPSSPKDIQNWKPDSREASSTSSHHH 137
           QPSRLQRRAP  +SLQINR  DW VAIPLLSPLVSP  P + ++ + D+R+        H
Sbjct: 14  QPSRLQRRAPPPSSLQINRVPDWNVAIPLLSPLVSPDQPIEAKS-RDDTRQHQQKELPRH 73

Query: 138 HHKESEPEKPP---VFKKWQHPAAPFHYDSGPRAPRFV 170
           H + +E +K     VFKKWQHPAAPF YD+    P FV
Sbjct: 74  HQQGAEADKSAQVAVFKKWQHPAAPFCYDTAQMVPPFV 110

The following BLAST results are available for this feature:

BLAST of ClCG06G006840 vs. Swiss-Prot


Match Name	E-value	Identity	Description
Y4445_ARATH	3.0e-10	41.67	Uncharacterized protein At4g14450, chloroplastic OS=Arabidopsis thaliana GN=At4g...	[more]

BLAST of ClCG06G006840 vs. TrEMBL


Match Name	E-value	Identity	Description
A0A0A0LLJ8_CUCSA	1.8e-38	80.00	Uncharacterized protein OS=Cucumis sativus GN=Csa_2G190740 PE=4 SV=1	[more]
A0A0A0LLJ8_CUCSA	3.4e-13	58.90	Uncharacterized protein OS=Cucumis sativus GN=Csa_2G190740 PE=4 SV=1	[more]
M5XT20_PRUPE	1.1e+00	39.39	Uncharacterized protein OS=Prunus persica GN=PRUPE_ppa013660mg PE=4 SV=1	[more]
A0A0V0GUS0_SOLCH	4.3e-16	59.09	Putative ovule protein OS=Solanum chacoense PE=4 SV=1	[more]
A0A0V0GUS0_SOLCH	2.8e+01	41.46	Putative ovule protein OS=Solanum chacoense PE=4 SV=1	[more]

BLAST of ClCG06G006840 vs. TAIR10


Match Name	E-value	Identity	Description
AT1G04330.1	7.2e-15	52.33	unknown protein	[more]
AT3G23170.1	3.0e-13	48.00	unknown protein	[more]
AT4G14450.1	1.7e-11	41.67	unknown protein	[more]

BLAST of ClCG06G006840 vs. NCBI nr


Match Name	E-value	Identity	Description
gi\|659121369\|ref\|XP_008460625.1\|	2.5e-41	80.91	PREDICTED: uncharacterized protein At4g14450, chloroplastic-like [Cucumis melo]	[more]
gi\|659121369\|ref\|XP_008460625.1\|	3.7e-13	56.79	PREDICTED: uncharacterized protein At4g14450, chloroplastic-like [Cucumis melo]	[more]
gi\|449449010\|ref\|XP_004142258.1\|	4.9e-13	58.90	PREDICTED: uncharacterized protein At4g14450, chloroplastic-like [Cucumis sativu...	[more]
gi\|1009141024\|ref\|XP_015887969.1\|	3.4e-06	49.28	PREDICTED: uncharacterized protein At4g14450, chloroplastic [Ziziphus jujuba]	[more]
gi\|502115887\|ref\|XP_004495310.1\|	1.1e-01	40.00	PREDICTED: uncharacterized protein At4g14450, chloroplastic [Cicer arietinum]	[more]

Annotated Terms

The following terms have been associated with this gene:

Vocabulary: **INTERPRO**
Term	Definition

GO Annotation

GO Assignments

This gene is annotated with the following GO terms.

Category	Term Accession	Term Name
biological_process	GO:0008150	biological_process
cellular_component	GO:0005575	cellular_component
molecular_function	GO:0003674	molecular_function

Relationships

The following mRNA feature(s) are a part of this gene:


Feature Name	Unique Name	Type
ClCG06G006840.1	ClCG06G006840.1	mRNA

InterPro

Analysis Name: InterPro Annotations of watermelon (Charleston Gray)
Date Performed: 2016-09-28


IPR Term	IPR Description	Source	Source Term	Source Description	Alignment
None	No IPR available	PANTHER	PTHR33912	FAMILY NOT NAMED	coord: 78..171 score: 4.1
None	No IPR available	PANTHER	PTHR33912:SF2	SUBFAMILY NOT NAMED	coord: 78..171 score: 4.1

Synteny

The following gene(s) are orthologous to this gene:


Gene	Orthologue	Organism	Block
ClCG06G006840	Csa2G190740	Cucumber (Chinese Long) v2	cuwcgB153
ClCG06G006840	MELO3C022975	Melon (DHL92) v3.5.1	mewcgB388
ClCG06G006840	Cla007570	Watermelon (97103) v1	wcgwmB344
ClCG06G006840	Cla97C06G116440	Watermelon (97103) v2	wcgwmbB273
ClCG06G006840	Bhi12G001455	Wax gourd	wcgwgoB500
ClCG06G006840	CmaCh17G001740	Cucurbita maxima (Rimu)	cmawcgB328
ClCG06G006840	CmaCh08G010940	Cucurbita maxima (Rimu)	cmawcgB804
ClCG06G006840	CmoCh08G010700	Cucurbita moschata (Rifu)	cmowcgB799
ClCG06G006840	CmoCh17G001710	Cucurbita moschata (Rifu)	cmowcgB325
ClCG06G006840	Lsi09G012490	Bottle gourd (USVL1VR-Ls)	lsiwcgB029
ClCG06G006840	Cp4.1LG17g01830	Cucurbita pepo (Zucchini)	cpewcgB294
ClCG06G006840	MELO3C022975.2	Melon (DHL92) v3.6.1	medwcgB378
ClCG06G006840	Carg10953	Silver-seed gourd	carwcgB1046
ClCG06G006840	Carg10077	Silver-seed gourd	carwcgB0221
ClCG06G006840	CsaV3_2G012950	Cucumber (Chinese Long) v3	cucwcgB161
ClCG06G006840	CsaV3_3G012380	Cucumber (Chinese Long) v3	cucwcgB254

The following gene(s) are paralogous to this gene:

None

The following block(s) are covering this gene:


Gene	Organism	Block
ClCG06G006840	Silver-seed gourd	carwcgB0227
ClCG06G006840	Silver-seed gourd	carwcgB0728
ClCG06G006840	Silver-seed gourd	carwcgB0758
ClCG06G006840	Silver-seed gourd	carwcgB0936
ClCG06G006840	Cucumber (Chinese Long) v3	cucwcgB160
ClCG06G006840	Watermelon (97103) v2	wcgwmbB269
ClCG06G006840	Watermelon (97103) v2	wcgwmbB275
ClCG06G006840	Wax gourd	wcgwgoB526
ClCG06G006840	Watermelon (Charleston Gray)	wcgwcgB027
ClCG06G006840	Watermelon (Charleston Gray)	wcgwcgB160
ClCG06G006840	Watermelon (Charleston Gray)	wcgwcgB174
ClCG06G006840	Cucumber (Gy14) v1	cgywcgB452
ClCG06G006840	Cucumber (Gy14) v1	cgywcgB654
ClCG06G006840	Cucurbita maxima (Rimu)	cmawcgB235
ClCG06G006840	Cucurbita maxima (Rimu)	cmawcgB466
ClCG06G006840	Cucurbita maxima (Rimu)	cmawcgB565
ClCG06G006840	Cucurbita maxima (Rimu)	cmawcgB745
ClCG06G006840	Cucurbita moschata (Rifu)	cmowcgB221
ClCG06G006840	Cucurbita moschata (Rifu)	cmowcgB465
ClCG06G006840	Cucurbita moschata (Rifu)	cmowcgB562
ClCG06G006840	Cucurbita moschata (Rifu)	cmowcgB746
ClCG06G006840	Wild cucumber (PI 183967)	cpiwcgB155
ClCG06G006840	Wild cucumber (PI 183967)	cpiwcgB156
ClCG06G006840	Wild cucumber (PI 183967)	cpiwcgB255
ClCG06G006840	Cucumber (Chinese Long) v2	cuwcgB246
ClCG06G006840	Melon (DHL92) v3.5.1	mewcgB441
ClCG06G006840	Watermelon (97103) v1	wcgwmB324
ClCG06G006840	Watermelon (97103) v1	wcgwmB331
ClCG06G006840	Cucurbita pepo (Zucchini)	cpewcgB144
ClCG06G006840	Cucurbita pepo (Zucchini)	cpewcgB238
ClCG06G006840	Cucurbita pepo (Zucchini)	cpewcgB561
ClCG06G006840	Cucurbita pepo (Zucchini)	cpewcgB682
ClCG06G006840	Cucurbita pepo (Zucchini)	cpewcgB788
ClCG06G006840	Bottle gourd (USVL1VR-Ls)	lsiwcgB343
ClCG06G006840	Bottle gourd (USVL1VR-Ls)	lsiwcgB344
ClCG06G006840	Cucumber (Gy14) v2	cgybwcgB143
ClCG06G006840	Cucumber (Gy14) v2	cgybwcgB230
ClCG06G006840	Melon (DHL92) v3.6.1	medwcgB437