WMU17596 (transcribed_cluster) Watermelon (97103) v1

NameWMU17596
Typetranscribed_cluster
OrganismCitrullus. lanatus (Watermelon (97103) v1)
DescriptionUnknown protein
LocationChr5 : 4025246 .. 4025697 (+)
Sequence length467
The following sequences are available for this feature:

transcribed_cluster sequence

GGGTAGAGGAATCTCACTCGTCTCTCAACTTCTTCAATTTTTGTGTTTAACCCACTCCGATCTGCACAGAGAAAATGGGCGATGCAGAGAGAAAAAGCCAGTGCCAAGCGCCGACACGGCTGCAGAGCCAGGCTCCGGCATCGATTGAGATAAAAGCGGGCGCCGAATTGGAACATGGCCATACCCTTGTTATCCCCTCTTGTATCACCTTCGTCTTGTGGGAATCCAGGGCAAGAGGAAGCCTTGTTGATGGCTGAGAATAAAGCGAGGGAGGAAGCCAAAGGGCTAAGCTTTACCAAATGGCAGCACCCTGCGGCTCCATTTTATTATGGGCCAGTCCCAAGGGCCACCCCCTTTTGGCCCCGTGTGAATATATATATATATATATATTTTTTCTCATCTTTTAATTGTTCTTCTGCTTTATCCATGAAACCATCTGTATCTATAAAGCTGCTTTAGGAAAATTT
BLAST of WMU17596 vs. TrEMBL
Match: A0A0A0L8D3_CUCSA (Uncharacterized protein OS=Cucumis sativus GN=Csa_3G141830 PE=4 SV=1)

HSP 1 Score: 92.0 bits (227), Expect = 6.6e-16
Identity = 43/68 (63.24%), Postives = 46/68 (67.65%), Query Frame = 1

Query: 160 APNWNMAIXXXXXXXXXXXCGNPGQEEALLMAENKAREEAKGLSFTKWQHPAAPFYYGPV 219
           A NWN+AI           CGN   E+ L MAEN AREE KGL+FTKWQHPAAPFYY PV
Sbjct: 30  ALNWNVAIPLLSPLVSPSSCGNSAPEKMLSMAENNAREETKGLTFTKWQHPAAPFYYEPV 89

Query: 220 PRATPFWP 279
           PRA PF P
Sbjct: 90  PRANPFVP 97

Query: 280 339
           
Sbjct: 150 97

Query: 340 364
           
Sbjct: 210 97

BLAST of WMU17596 vs. TrEMBL
Match: A0A0A0L8D3_CUCSA (Uncharacterized protein OS=Cucumis sativus GN=Csa_3G141830 PE=4 SV=1)

HSP 1 Score: 40.0 bits (92), Expect = 3.0e+00
Identity = 22/28 (78.57%), Postives = 23/28 (82.14%), Query Frame = 3

Query: 75  MGDAERKSQCQ-APTRLQSQAPASIEIK 134
           M DAERK+    APTRLQSQAPASIEIK
Sbjct: 1   MSDAERKTATTVAPTRLQSQAPASIEIK 28

Query: 135 156
           
Sbjct: 61  28

BLAST of WMU17596 vs. NCBI nr
Match: gi|700201754|gb|KGN56887.1| (hypothetical protein Csa_3G141830 [Cucumis sativus])

HSP 1 Score: 92.0 bits (227), Expect = 9.5e-16
Identity = 43/68 (63.24%), Postives = 46/68 (67.65%), Query Frame = 1

Query: 160 APNWNMAIXXXXXXXXXXXCGNPGQEEALLMAENKAREEAKGLSFTKWQHPAAPFYYGPV 219
           A NWN+AI           CGN   E+ L MAEN AREE KGL+FTKWQHPAAPFYY PV
Sbjct: 30  ALNWNVAIPLLSPLVSPSSCGNSAPEKMLSMAENNAREETKGLTFTKWQHPAAPFYYEPV 89

Query: 220 PRATPFWP 279
           PRA PF P
Sbjct: 90  PRANPFVP 97

Query: 280 339
           
Sbjct: 150 97

Query: 340 364
           
Sbjct: 210 97

The following BLAST results are available for this feature:
Match NameE-valueIdentityDescription
A0A0A0L8D3_CUCSA6.6e-1663.24Uncharacterized protein OS=Cucumis sativus GN=Csa_3G141830 PE=4 SV=1[more]
A0A0A0L8D3_CUCSA3.0e+0078.57Uncharacterized protein OS=Cucumis sativus GN=Csa_3G141830 PE=4 SV=1[more]
Match NameE-valueIdentityDescription
gi|700201754|gb|KGN56887.1|9.5e-1663.24hypothetical protein Csa_3G141830 [Cucumis sativus][more]

This transcribed_cluster is associated with the following gene feature(s):

Feature NameUnique NameType
Cla021548Cla021548gene


The following EST feature(s) are a part of this transcribed_cluster:

Feature NameUnique NameType
S1_0059138S1_0059138EST
S1_0091720S1_0091720EST
S1_0093239S1_0093239EST
S1_0100734S1_0100734EST
S1_0157111S1_0157111EST
S2_0111681S2_0111681EST
S3_0170128S3_0170128EST
S4_0021801S4_0021801EST
S4_0035255S4_0035255EST
S4_0062355S4_0062355EST
S4_0148582S4_0148582EST