Cla021242 (gene) Watermelon (97103) v1 | Cucurbit Genomics Database (CuGenDB)

Overview


Name	Cla021242
Type	gene
Organism	Citrullus. lanatus (Watermelon (97103) v1)
Description	Actin depolymerizing factor 10 (AHRD V1 ***- B9I489_POPTR); contains Interpro domain(s) IPR002108 Actin-binding, cofilin/tropomyosin type
Location	Chr5 : 1522848 .. 1524561 (+)

Genome Viewer

Gene Expression

Sequences

The following sequences are available for this feature:

Gene sequence (with intron)

Legend: CDS

Hold the cursor over a type above to highlight its positions in the sequence below.

ATGGCAGTTCATGATGAGTGCAAACTCAAGTTTTTGGATCTGAAGGCCAAAAGAAAATACAGATTCATAGTGTTCAAGATTGAGGAGAAGATCCAGCAGGTCACGGTTGAGAAAGTCGGTGGTCCCGACGAAACCTACGAGGATTTCACCGCTTCTATTCCTGCCAATGAGTGTCGTTATGCTGTCTATGATTTCGACTTCACAACCGATGAAAATTGCCAGAAGAGCAAGATTTACTTCATTGCCTGGTATTTTTTCTCTATATTTATCTTACCTTTTGAAAATCTAGTTCTTGTTTGATAATATTTTTTTTTTTGTTTTTTAATTTTGAAAATTAAGCTTATAAACATTGATAAAACATTGTTTTTATATAAAAAACAAAATGGTAGCTAAACTAGCTTTAAATTAGATTTTCTCATAGAGATTTAGGTTGACGGACTAAAGCTTATGAACATTTGTCTCAAACAAACATTCACATATTAAAACTTTCGATTATATATTCGCGAAGTGTTGTGTTTGGATTCAAGTATTTCCATGCAAGATTTATTGGAACCCTAAAATTTTAATTTTATGTTTGGTAAATATGTGAATTTTAAAAAATTATGTCAATTACGTTGAAGATATATTTGATATAAAATTGAAAATTTTAAAAATCTATTAGACACAAAAATGAATTATTTATTAGACATTTTTTAAAATTGTTAAACACAAATTGAAAGTTTGAGAACCTATTAAATATTTATGAAAGTTTAGGTATCAAATAGGTACAAATCTACAAGATCAAAAACTAAACCTATAACTTAACCAAAAAAAATTAATTTTTAGGTTAAATTATTAATTTAGTTTGTGGACTTGCATCTTTGTATCAAATGAATTTTGAAGCTTTATAATAGTTTTCTTCTTTTAAAAAGAACTTCTTAATATATATATTTTTAATTTAATGGGTTCTTGATCTTAAAAATACATCTTTAAACTTACAAGTTTGTAATCTAAAAAGTCTCCAACTATTTTTTTTTTAATTCAAAAATCTATTGAACACAAAATTAAAAATGTGCATCTATTCGAGCCATAAATTTTTTAAATTGTAAATTTAATGATCGAGTTTTCAATTATCTTAAAAAATTCATAGATCCTACTAGACACTAGTATAAGACTCCATTAGACATTTTCTTAAAAAAAAAAAAAAAAAAAAATCCATTAGACATAAAACTCAAATTTATGTCTAATAGATAATTTTTTGTTAAAAAAAAAAAATTCAGTAACCTAATAGACAATAAAATAAAAAAAAGTTTGGAAAATACATGAAATCAAATAGACATAAACTCAAAGTTTAAAGACTAAATTTGCTATTTAACCTTAGAAAGTTCGATATTCCTATTAAACACAAAATTCAATTTTATACCTAAAGATATGTTAATTTTTAGAAATACTAAATGCGTTGTTTCTTAAAAATTAAGAGACTTATTAAACTCAAATACGAAAGTTTAATGCTAAACTTATAATTTAATCTTACTTTTACTATCATTTATCGACTTAAGCTTTTGTAATTTATTTATGTGTTAGGTCACCAGACTCTTCAAGAATAAGAAGTAAAATGCTATATGCGAGCTCCAAGGATAGATTCAAGAGAGAGTTGGATGGAATTCAAGTTGAATTACAAGCCACAGATCCCAGTGAGATGAGCTTTGACATCATTAAAGCAAGAGCTCTCTGA

mRNA sequence

ATGGCAGTTCATGATGAGTGCAAACTCAAGTTTTTGGATCTGAAGGCCAAAAGAAAATACAGATTCATAGTGTTCAAGATTGAGGAGAAGATCCAGCAGGTCACGGTTGAGAAAGTCGGTGGTCCCGACGAAACCTACGAGGATTTCACCGCTTCTATTCCTGCCAATGAGTGTCGTTATGCTGTCTATGATTTCGACTTCACAACCGATGAAAATTGCCAGAAGAGCAAGATTTACTTCATTGCCTGGTCACCAGACTCTTCAAGAATAAGAAGTAAAATGCTATATGCGAGCTCCAAGGATAGATTCAAGAGAGAGTTGGATGGAATTCAAGTTGAATTACAAGCCACAGATCCCAGTGAGATGAGCTTTGACATCATTAAAGCAAGAGCTCTCTGA

Coding sequence (CDS)

ATGGCAGTTCATGATGAGTGCAAACTCAAGTTTTTGGATCTGAAGGCCAAAAGAAAATACAGATTCATAGTGTTCAAGATTGAGGAGAAGATCCAGCAGGTCACGGTTGAGAAAGTCGGTGGTCCCGACGAAACCTACGAGGATTTCACCGCTTCTATTCCTGCCAATGAGTGTCGTTATGCTGTCTATGATTTCGACTTCACAACCGATGAAAATTGCCAGAAGAGCAAGATTTACTTCATTGCCTGGTCACCAGACTCTTCAAGAATAAGAAGTAAAATGCTATATGCGAGCTCCAAGGATAGATTCAAGAGAGAGTTGGATGGAATTCAAGTTGAATTACAAGCCACAGATCCCAGTGAGATGAGCTTTGACATCATTAAAGCAAGAGCTCTCTGA

Protein sequence

MAVHDECKLKFLDLKAKRKYRFIVFKIEEKIQQVTVEKVGGPDETYEDFTASIPANECRYAVYDFDFTTDENCQKSKIYFIAWSPDSSRIRSKMLYASSKDRFKRELDGIQVELQATDPSEMSFDIIKARAL

Homology

[Close]

BLAST of Cla021242 vs. Swiss-Prot
Match: ADF7_ARATH (Actin-depolymerizing factor 7 OS=Arabidopsis thaliana GN=ADF7 PE=2 SV=1)

HSP 1 Score: 228.8 bits (582), Expect = 3.5e-59
Identity = 110/132 (83.33%), Postives = 121/132 (91.67%), Query Frame = 1


Query: 1   MAVHDECKLKFLDLKAKRKYRFIVFKIEEKIQQVTVEKVGGPDETYEDFTASIPANECRY 60
           MAV DECKLKFL+LK+KR YRFI+F+I+   QQV VEK+G PDETY+DFTAS+PANECRY
Sbjct: 8   MAVEDECKLKFLELKSKRNYRFIIFRIDG--QQVVVEKLGNPDETYDDFTASLPANECRY 67

Query: 61  AVYDFDFTTDENCQKSKIYFIAWSPDSSRIRSKMLYASSKDRFKRELDGIQVELQATDPS 120
           AV+DFDF TDENCQKSKI+FIAWSPDSSR+R KM+YASSKDRFKRELDGIQVELQATDPS
Sbjct: 68  AVFDFDFITDENCQKSKIFFIAWSPDSSRVRMKMVYASSKDRFKRELDGIQVELQATDPS 127

Query: 121 EMSFDIIKARAL 133
           EMSFDIIK+RAL
Sbjct: 128 EMSFDIIKSRAL 137

[Close]

BLAST of Cla021242 vs. Swiss-Prot
Match: ADF_LILLO (Actin-depolymerizing factor OS=Lilium longiflorum PE=2 SV=1)

HSP 1 Score: 228.8 bits (582), Expect = 3.5e-59
Identity = 107/131 (81.68%), Postives = 121/131 (92.37%), Query Frame = 1


Query: 1   MAVHDECKLKFLDLKAKRKYRFIVFKIEEKIQQVTVEKVGGPDETYEDFTASIPANECRY 60
           MAV DECKLKF++LKAKR +RFIVFKIEEK+QQVTVE++G P+E+Y+DFT  +P NECRY
Sbjct: 8   MAVDDECKLKFMELKAKRNFRFIVFKIEEKVQQVTVERLGQPNESYDDFTECLPPNECRY 67

Query: 61  AVYDFDFTTDENCQKSKIYFIAWSPDSSRIRSKMLYASSKDRFKRELDGIQVELQATDPS 120
           AV+DFDF TDENCQKSKI+FI+WSPD+SR+RSKMLYAS+KDRFKRELDGIQVELQATDPS
Sbjct: 68  AVFDFDFVTDENCQKSKIFFISWSPDTSRVRSKMLYASTKDRFKRELDGIQVELQATDPS 127

Query: 121 EMSFDIIKARA 132
           EMS DIIKARA
Sbjct: 128 EMSMDIIKARA 138

[Close]

BLAST of Cla021242 vs. Swiss-Prot
Match: ADF10_ARATH (Actin-depolymerizing factor 10 OS=Arabidopsis thaliana GN=ADF10 PE=2 SV=1)

HSP 1 Score: 226.9 bits (577), Expect = 1.3e-58
Identity = 108/130 (83.08%), Postives = 117/130 (90.00%), Query Frame = 1


Query: 1   MAVHDECKLKFLDLKAKRKYRFIVFKIEEKIQQVTVEKVGGPDETYEDFTASIPANECRY 60
           M V DECKLKFL+LKAKR YRFIVFKI+EK QQV ++K+G P+ETYEDFT SIP +ECRY
Sbjct: 8   MHVSDECKLKFLELKAKRNYRFIVFKIDEKAQQVMIDKLGNPEETYEDFTRSIPEDECRY 67

Query: 61  AVYDFDFTTDENCQKSKIYFIAWSPDSSRIRSKMLYASSKDRFKRELDGIQVELQATDPS 120
           AVYD+DFTT ENCQKSKI+FIAWSPD+SR+RSKMLYASSKDRFKRELDGIQVELQATDPS
Sbjct: 68  AVYDYDFTTPENCQKSKIFFIAWSPDTSRVRSKMLYASSKDRFKRELDGIQVELQATDPS 127

Query: 121 EMSFDIIKAR 131
           EMS DIIK R
Sbjct: 128 EMSLDIIKGR 137

[Close]

BLAST of Cla021242 vs. Swiss-Prot
Match: ADF8_ARATH (Actin-depolymerizing factor 8 OS=Arabidopsis thaliana GN=ADF8 PE=2 SV=2)

HSP 1 Score: 225.7 bits (574), Expect = 2.9e-58
Identity = 105/130 (80.77%), Postives = 120/130 (92.31%), Query Frame = 1


Query: 1   MAVHDECKLKFLDLKAKRKYRFIVFKIEEKIQQVTVEKVGGPDETYEDFTASIPANECRY 60
           M V+DECK+KFL+LKAKR YRFIVFKI+EK QQV +EK+G P+ETY+DFT+SIP +ECRY
Sbjct: 8   MHVNDECKIKFLELKAKRTYRFIVFKIDEKAQQVQIEKLGNPEETYDDFTSSIPDDECRY 67

Query: 61  AVYDFDFTTDENCQKSKIYFIAWSPDSSRIRSKMLYASSKDRFKRELDGIQVELQATDPS 120
           AVYDFDFTT++NCQKSKI+FIAWSPD+SR+RSKMLYASSKDRFKRE++GIQVELQATDPS
Sbjct: 68  AVYDFDFTTEDNCQKSKIFFIAWSPDTSRVRSKMLYASSKDRFKREMEGIQVELQATDPS 127

Query: 121 EMSFDIIKAR 131
           EMS DIIK R
Sbjct: 128 EMSLDIIKGR 137

[Close]

BLAST of Cla021242 vs. Swiss-Prot
Match: ADF1_ORYSJ (Actin-depolymerizing factor 1 OS=Oryza sativa subsp. japonica GN=ADF1 PE=2 SV=1)

HSP 1 Score: 224.9 bits (572), Expect = 5.0e-58
Identity = 105/132 (79.55%), Postives = 121/132 (91.67%), Query Frame = 1


Query: 1   MAVHDECKLKFLDLKAKRKYRFIVFKIEEKIQQVTVEKVGGPDETYEDFTASIPANECRY 60
           MAV DECKLKFL+LKAKR +RFIVFKI EK+QQV V+++G P E+Y+DFTA +PA+ECRY
Sbjct: 8   MAVCDECKLKFLELKAKRSFRFIVFKINEKVQQVVVDRLGQPGESYDDFTACLPADECRY 67

Query: 61  AVYDFDFTTDENCQKSKIYFIAWSPDSSRIRSKMLYASSKDRFKRELDGIQVELQATDPS 120
           AV+DFDF TDENCQKSKI+FI+W+PD+SR+RSKMLYASSKDRFKRELDGIQVELQATDPS
Sbjct: 68  AVFDFDFVTDENCQKSKIFFISWAPDTSRVRSKMLYASSKDRFKRELDGIQVELQATDPS 127

Query: 121 EMSFDIIKARAL 133
           EMS DI+K+RAL
Sbjct: 128 EMSMDIVKSRAL 139

[Close]

BLAST of Cla021242 vs. TrEMBL
Match: A0A0A0L6A2_CUCSA (Uncharacterized protein OS=Cucumis sativus GN=Csa_3G122480 PE=3 SV=1)

HSP 1 Score: 258.1 bits (658), Expect = 6.0e-66
Identity = 125/132 (94.70%), Postives = 132/132 (100.00%), Query Frame = 1


Query: 1   MAVHDECKLKFLDLKAKRKYRFIVFKIEEKIQQVTVEKVGGPDETYEDFTASIPANECRY 60
           MAVHDECKLKFLDLKAKRKYRFIVFKIEEK+QQVTV+KVGGPDETY+DFTASIPANECRY
Sbjct: 8   MAVHDECKLKFLDLKAKRKYRFIVFKIEEKMQQVTVDKVGGPDETYDDFTASIPANECRY 67

Query: 61  AVYDFDFTTDENCQKSKIYFIAWSPDSSRIRSKMLYASSKDRFKRELDGIQVELQATDPS 120
           AVYD++FTT+ENCQKSKIYFIAWSPDSSRIRSKMLYASSKDRFKRELDGIQVELQATDPS
Sbjct: 68  AVYDYNFTTNENCQKSKIYFIAWSPDSSRIRSKMLYASSKDRFKRELDGIQVELQATDPS 127

Query: 121 EMSFDIIKARAL 133
           EMSFDIIK+RAL
Sbjct: 128 EMSFDIIKSRAL 139

[Close]

BLAST of Cla021242 vs. TrEMBL
Match: V4TSD2_9ROSI (Uncharacterized protein OS=Citrus clementina GN=CICLE_v10023304mg PE=3 SV=1)

HSP 1 Score: 245.4 bits (625), Expect = 4.0e-62
Identity = 116/132 (87.88%), Postives = 129/132 (97.73%), Query Frame = 1


Query: 1   MAVHDECKLKFLDLKAKRKYRFIVFKIEEKIQQVTVEKVGGPDETYEDFTASIPANECRY 60
           MAVHDECKLKFL+LKAKR YRFIVFKIEEKIQQVTVEK+G P+E+YEDFTAS+PA+ECRY
Sbjct: 9   MAVHDECKLKFLELKAKRSYRFIVFKIEEKIQQVTVEKLGEPNESYEDFTASLPADECRY 68

Query: 61  AVYDFDFTTDENCQKSKIYFIAWSPDSSRIRSKMLYASSKDRFKRELDGIQVELQATDPS 120
           AVYDFDFTTDENCQKSKI+F+AWSPD+SRIRSKMLYASSKDRF+RELDG+QVELQATDPS
Sbjct: 69  AVYDFDFTTDENCQKSKIFFVAWSPDTSRIRSKMLYASSKDRFRRELDGVQVELQATDPS 128

Query: 121 EMSFDIIKARAL 133
           EMS DI+K+RAL
Sbjct: 129 EMSLDIVKSRAL 140

[Close]

BLAST of Cla021242 vs. TrEMBL
Match: M0S950_MUSAM (Uncharacterized protein OS=Musa acuminata subsp. malaccensis PE=3 SV=1)

HSP 1 Score: 241.5 bits (615), Expect = 5.8e-61
Identity = 114/132 (86.36%), Postives = 127/132 (96.21%), Query Frame = 1


Query: 1   MAVHDECKLKFLDLKAKRKYRFIVFKIEEKIQQVTVEKVGGPDETYEDFTASIPANECRY 60
           MAVHDECKLKFLDLKAKR YRFIVFKI+EKIQQVTVEK+G PDETY+DFTAS+PA+ECRY
Sbjct: 96  MAVHDECKLKFLDLKAKRNYRFIVFKIDEKIQQVTVEKLGQPDETYDDFTASLPADECRY 155

Query: 61  AVYDFDFTTDENCQKSKIYFIAWSPDSSRIRSKMLYASSKDRFKRELDGIQVELQATDPS 120
           AV+DFDF TDE+CQKSKI+FI+W+PD+SR+RSKMLYASSKDRFKRELDGIQVELQATDPS
Sbjct: 156 AVFDFDFVTDEHCQKSKIFFISWAPDTSRVRSKMLYASSKDRFKRELDGIQVELQATDPS 215

Query: 121 EMSFDIIKARAL 133
           EMS DI+K RAL
Sbjct: 216 EMSIDIVKGRAL 227

[Close]

BLAST of Cla021242 vs. TrEMBL
Match: M5XE35_PRUPE (Uncharacterized protein OS=Prunus persica GN=PRUPE_ppa013108mg PE=3 SV=1)

HSP 1 Score: 241.1 bits (614), Expect = 7.5e-61
Identity = 115/132 (87.12%), Postives = 127/132 (96.21%), Query Frame = 1


Query: 1   MAVHDECKLKFLDLKAKRKYRFIVFKIEEKIQQVTVEKVGGPDETYEDFTASIPANECRY 60
           MAVHD+CKLKFL+LKAKR +RFIVFKIEEKIQQV VEKVGGPDE+Y+DF AS+PA+ECRY
Sbjct: 8   MAVHDDCKLKFLELKAKRNHRFIVFKIEEKIQQVIVEKVGGPDESYDDFAASMPADECRY 67

Query: 61  AVYDFDFTTDENCQKSKIYFIAWSPDSSRIRSKMLYASSKDRFKRELDGIQVELQATDPS 120
           AVYDFDFTT+ENCQKSKI+FIAW+PD+SR+RSKMLYASSKDRFKRELDGIQVELQATDPS
Sbjct: 68  AVYDFDFTTNENCQKSKIFFIAWAPDTSRVRSKMLYASSKDRFKRELDGIQVELQATDPS 127

Query: 121 EMSFDIIKARAL 133
           EMS DIIK RAL
Sbjct: 128 EMSLDIIKGRAL 139

[Close]

BLAST of Cla021242 vs. TrEMBL
Match: A5AW33_VITVI (Putative uncharacterized protein OS=Vitis vinifera GN=VITISV_012391 PE=3 SV=1)

HSP 1 Score: 240.7 bits (613), Expect = 9.8e-61
Identity = 115/132 (87.12%), Postives = 126/132 (95.45%), Query Frame = 1


Query: 1   MAVHDECKLKFLDLKAKRKYRFIVFKIEEKIQQVTVEKVGGPDETYEDFTASIPANECRY 60
           MAVHDECKLKFL+LKAKR +RFIVFKI+E+IQQV VEK+G PDETYEDFT S+PA+ECRY
Sbjct: 8   MAVHDECKLKFLELKAKRNHRFIVFKIDERIQQVMVEKLGSPDETYEDFTNSLPADECRY 67

Query: 61  AVYDFDFTTDENCQKSKIYFIAWSPDSSRIRSKMLYASSKDRFKRELDGIQVELQATDPS 120
           AV+DFDFTTDENCQKSKI+FIAWSPD+SR+RSKMLYASSKDRFKRELDGIQVELQATDPS
Sbjct: 68  AVFDFDFTTDENCQKSKIFFIAWSPDTSRVRSKMLYASSKDRFKRELDGIQVELQATDPS 127

Query: 121 EMSFDIIKARAL 133
           EMS DIIK RAL
Sbjct: 128 EMSMDIIKGRAL 139

[Close]

BLAST of Cla021242 vs. NCBI nr
Match: gi|659075277|ref|XP_008438059.1| (PREDICTED: actin-depolymerizing factor 7-like [Cucumis melo])

HSP 1 Score: 262.7 bits (670), Expect = 3.5e-67
Identity = 128/132 (96.97%), Postives = 132/132 (100.00%), Query Frame = 1


Query: 1   MAVHDECKLKFLDLKAKRKYRFIVFKIEEKIQQVTVEKVGGPDETYEDFTASIPANECRY 60
           MAVHDECKLKFLDLKAKRKYRFIVFKIEEK+QQVTVEKVGGPDETY+DFTASIPANECRY
Sbjct: 8   MAVHDECKLKFLDLKAKRKYRFIVFKIEEKMQQVTVEKVGGPDETYDDFTASIPANECRY 67

Query: 61  AVYDFDFTTDENCQKSKIYFIAWSPDSSRIRSKMLYASSKDRFKRELDGIQVELQATDPS 120
           AVYDFDFTT+ENCQKSKIYFIAWSPDSSRIRSKMLYASSKDRFKRELDGIQVELQATDPS
Sbjct: 68  AVYDFDFTTEENCQKSKIYFIAWSPDSSRIRSKMLYASSKDRFKRELDGIQVELQATDPS 127

Query: 121 EMSFDIIKARAL 133
           EMSFDIIK+RAL
Sbjct: 128 EMSFDIIKSRAL 139

[Close]

BLAST of Cla021242 vs. NCBI nr
Match: gi|778677238|ref|XP_011650757.1| (PREDICTED: actin-depolymerizing factor 7-like [Cucumis sativus])

HSP 1 Score: 258.1 bits (658), Expect = 8.6e-66
Identity = 125/132 (94.70%), Postives = 132/132 (100.00%), Query Frame = 1


Query: 1   MAVHDECKLKFLDLKAKRKYRFIVFKIEEKIQQVTVEKVGGPDETYEDFTASIPANECRY 60
           MAVHDECKLKFLDLKAKRKYRFIVFKIEEK+QQVTV+KVGGPDETY+DFTASIPANECRY
Sbjct: 8   MAVHDECKLKFLDLKAKRKYRFIVFKIEEKMQQVTVDKVGGPDETYDDFTASIPANECRY 67

Query: 61  AVYDFDFTTDENCQKSKIYFIAWSPDSSRIRSKMLYASSKDRFKRELDGIQVELQATDPS 120
           AVYD++FTT+ENCQKSKIYFIAWSPDSSRIRSKMLYASSKDRFKRELDGIQVELQATDPS
Sbjct: 68  AVYDYNFTTNENCQKSKIYFIAWSPDSSRIRSKMLYASSKDRFKRELDGIQVELQATDPS 127

Query: 121 EMSFDIIKARAL 133
           EMSFDIIK+RAL
Sbjct: 128 EMSFDIIKSRAL 139

[Close]

BLAST of Cla021242 vs. NCBI nr
Match: gi|567894176|ref|XP_006439576.1| (hypothetical protein CICLE_v10023304mg [Citrus clementina])

HSP 1 Score: 245.4 bits (625), Expect = 5.7e-62
Identity = 116/132 (87.88%), Postives = 129/132 (97.73%), Query Frame = 1


Query: 1   MAVHDECKLKFLDLKAKRKYRFIVFKIEEKIQQVTVEKVGGPDETYEDFTASIPANECRY 60
           MAVHDECKLKFL+LKAKR YRFIVFKIEEKIQQVTVEK+G P+E+YEDFTAS+PA+ECRY
Sbjct: 9   MAVHDECKLKFLELKAKRSYRFIVFKIEEKIQQVTVEKLGEPNESYEDFTASLPADECRY 68

Query: 61  AVYDFDFTTDENCQKSKIYFIAWSPDSSRIRSKMLYASSKDRFKRELDGIQVELQATDPS 120
           AVYDFDFTTDENCQKSKI+F+AWSPD+SRIRSKMLYASSKDRF+RELDG+QVELQATDPS
Sbjct: 69  AVYDFDFTTDENCQKSKIFFVAWSPDTSRIRSKMLYASSKDRFRRELDGVQVELQATDPS 128

Query: 121 EMSFDIIKARAL 133
           EMS DI+K+RAL
Sbjct: 129 EMSLDIVKSRAL 140

[Close]

BLAST of Cla021242 vs. NCBI nr
Match: gi|568845458|ref|XP_006476590.1| (PREDICTED: actin-depolymerizing factor 1 [Citrus sinensis])

HSP 1 Score: 244.2 bits (622), Expect = 1.3e-61
Identity = 115/132 (87.12%), Postives = 129/132 (97.73%), Query Frame = 1


Query: 1   MAVHDECKLKFLDLKAKRKYRFIVFKIEEKIQQVTVEKVGGPDETYEDFTASIPANECRY 60
           MAVHD+CKLKFL+LKAKR YRFIVFKIEEKIQQVTVEK+G P+E+YEDFTAS+PA+ECRY
Sbjct: 8   MAVHDDCKLKFLELKAKRSYRFIVFKIEEKIQQVTVEKLGEPNESYEDFTASLPADECRY 67

Query: 61  AVYDFDFTTDENCQKSKIYFIAWSPDSSRIRSKMLYASSKDRFKRELDGIQVELQATDPS 120
           AVYDFDFTTDENCQKSKI+F+AWSPD+SRIRSKMLYASSKDRF+RELDG+QVELQATDPS
Sbjct: 68  AVYDFDFTTDENCQKSKIFFVAWSPDTSRIRSKMLYASSKDRFRRELDGVQVELQATDPS 127

Query: 121 EMSFDIIKARAL 133
           EMS DI+K+RAL
Sbjct: 128 EMSLDIVKSRAL 139

[Close]

BLAST of Cla021242 vs. NCBI nr
Match: gi|764625369|ref|XP_004306801.2| (PREDICTED: actin-depolymerizing factor 10 isoform X1 [Fragaria vesca subsp. vesca])

HSP 1 Score: 242.7 bits (618), Expect = 3.7e-61
Identity = 115/132 (87.12%), Postives = 127/132 (96.21%), Query Frame = 1


Query: 1   MAVHDECKLKFLDLKAKRKYRFIVFKIEEKIQQVTVEKVGGPDETYEDFTASIPANECRY 60
           MAVHD+CKLKFL+LKAKR +RFIVFKIEEKIQQV VEK+GGPDETYEDFT SIPA+ECRY
Sbjct: 8   MAVHDDCKLKFLELKAKRNHRFIVFKIEEKIQQVIVEKIGGPDETYEDFTNSIPADECRY 67

Query: 61  AVYDFDFTTDENCQKSKIYFIAWSPDSSRIRSKMLYASSKDRFKRELDGIQVELQATDPS 120
           AVYDFDFTT+ENCQKSKI+FI+WSPD+SR+RSKMLYASSKDRFKREL+GIQVELQATDPS
Sbjct: 68  AVYDFDFTTEENCQKSKIFFISWSPDTSRVRSKMLYASSKDRFKRELEGIQVELQATDPS 127

Query: 121 EMSFDIIKARAL 133
           EMS D+IK RAL
Sbjct: 128 EMSLDVIKGRAL 139

The following BLAST results are available for this feature:

BLAST of Cla021242 vs. Swiss-Prot


Match Name	E-value	Identity	Description
ADF7_ARATH	3.5e-59	83.33	Actin-depolymerizing factor 7 OS=Arabidopsis thaliana GN=ADF7 PE=2 SV=1	[more]
ADF_LILLO	3.5e-59	81.68	Actin-depolymerizing factor OS=Lilium longiflorum PE=2 SV=1	[more]
ADF10_ARATH	1.3e-58	83.08	Actin-depolymerizing factor 10 OS=Arabidopsis thaliana GN=ADF10 PE=2 SV=1	[more]
ADF8_ARATH	2.9e-58	80.77	Actin-depolymerizing factor 8 OS=Arabidopsis thaliana GN=ADF8 PE=2 SV=2	[more]
ADF1_ORYSJ	5.0e-58	79.55	Actin-depolymerizing factor 1 OS=Oryza sativa subsp. japonica GN=ADF1 PE=2 SV=1	[more]

BLAST of Cla021242 vs. TrEMBL


Match Name	E-value	Identity	Description
A0A0A0L6A2_CUCSA	6.0e-66	94.70	Uncharacterized protein OS=Cucumis sativus GN=Csa_3G122480 PE=3 SV=1	[more]
V4TSD2_9ROSI	4.0e-62	87.88	Uncharacterized protein OS=Citrus clementina GN=CICLE_v10023304mg PE=3 SV=1	[more]
M0S950_MUSAM	5.8e-61	86.36	Uncharacterized protein OS=Musa acuminata subsp. malaccensis PE=3 SV=1	[more]
M5XE35_PRUPE	7.5e-61	87.12	Uncharacterized protein OS=Prunus persica GN=PRUPE_ppa013108mg PE=3 SV=1	[more]
A5AW33_VITVI	9.8e-61	87.12	Putative uncharacterized protein OS=Vitis vinifera GN=VITISV_012391 PE=3 SV=1	[more]

BLAST of Cla021242 vs. NCBI nr


Match Name	E-value	Identity	Description
gi\|659075277\|ref\|XP_008438059.1\|	3.5e-67	96.97	PREDICTED: actin-depolymerizing factor 7-like [Cucumis melo]	[more]
gi\|778677238\|ref\|XP_011650757.1\|	8.6e-66	94.70	PREDICTED: actin-depolymerizing factor 7-like [Cucumis sativus]	[more]
gi\|567894176\|ref\|XP_006439576.1\|	5.7e-62	87.88	hypothetical protein CICLE_v10023304mg [Citrus clementina]	[more]
gi\|568845458\|ref\|XP_006476590.1\|	1.3e-61	87.12	PREDICTED: actin-depolymerizing factor 1 [Citrus sinensis]	[more]
gi\|764625369\|ref\|XP_004306801.2\|	3.7e-61	87.12	PREDICTED: actin-depolymerizing factor 10 isoform X1 [Fragaria vesca subsp. vesc...	[more]

Annotated Terms

The following terms have been associated with this gene:

Vocabulary: **INTERPRO**
Term	Definition
IPR002108	ADF-H
IPR017904	ADF/Cofilin

Vocabulary: **Molecular Function**
Term	Definition
GO:0003779	actin binding

Vocabulary: **Cellular Component**
Term	Definition
GO:0005622	intracellular
GO:0015629	actin cytoskeleton

Vocabulary: **Biological Process**
Term	Definition
GO:0030042	actin filament depolymerization

GO Annotation

GO Assignments

This gene is annotated with the following GO terms.

Category	Term Accession	Term Name
biological_process	GO:0030042	actin filament depolymerization
cellular_component	GO:0015629	actin cytoskeleton
cellular_component	GO:0005622	intracellular
cellular_component	GO:0005884	actin filament
molecular_function	GO:0003779	actin binding

Relationships

The following mRNA feature(s) are a part of this gene:


Feature Name	Unique Name	Type
Cla021242	Cla021242.1	mRNA

InterPro

Analysis Name: InterPro Annotations of watermelon (97103)
Date Performed: 2016-09-28


IPR Term	IPR Description	Source	Source Term	Source Description	Alignment
IPR002108	Actin-depolymerising factor homology domain	PFAM	PF00241	Cofilin_ADF	coord: 7..129 score: 1.0
IPR002108	Actin-depolymerising factor homology domain	SMART	SM00102	adf_2	coord: 5..132 score: 1.6
IPR002108	Actin-depolymerising factor homology domain	PROFILE	PS51263	ADF_H	coord: 1..132 score: 39
IPR017904	ADF/Cofilin/Destrin	PANTHER	PTHR11913	COFILIN-RELATED	coord: 1..131 score: 7.4E
None	No IPR available	PANTHER	PTHR11913:SF30	ACTIN-DEPOLYMERIZING FACTOR 10-RELATED	coord: 1..131 score: 7.4E
None	No IPR available	unknown	SSF55753	Actin depolymerizing proteins	coord: 1..130 score: 5.65

Synteny

The following gene(s) are orthologous to this gene:


Gene	Orthologue	Organism	Block
Cla021242	Cla97C05G082010	Watermelon (97103) v2	wmwmbB206
Cla021242	Csa3G122480	Cucumber (Chinese Long) v2	cuwmB233
Cla021242	MELO3C006118	Melon (DHL92) v3.5.1	mewmB461
Cla021242	MELO3C006910	Melon (DHL92) v3.5.1	mewmB470
Cla021242	CSPI03G08860	Wild cucumber (PI 183967)	cpiwmB231
Cla021242	Cucsa.258290	Cucumber (Gy14) v1	cgywmB479
Cla021242	CmaCh14G020300	Cucurbita maxima (Rimu)	cmawmB242
Cla021242	CmaCh06G010610	Cucurbita maxima (Rimu)	cmawmB802
Cla021242	CmoCh06G010820	Cucurbita moschata (Rifu)	cmowmB794
Cla021242	CmoCh14G020920	Cucurbita moschata (Rifu)	cmowmB231
Cla021242	Lsi05G020310	Bottle gourd (USVL1VR-Ls)	lsiwmB365
Cla021242	Cp4.1LG03g16770	Cucurbita pepo (Zucchini)	cpewmB613
Cla021242	Cp4.1LG08g01220	Cucurbita pepo (Zucchini)	cpewmB844
Cla021242	MELO3C006118.2	Melon (DHL92) v3.6.1	medwmB447
Cla021242	Carg24638	Silver-seed gourd	carwmB0378
Cla021242	Carg21008	Silver-seed gourd	carwmB0487
Cla021242	CsaV3_3G009000	Cucumber (Chinese Long) v3	cucwmB239
Cla021242	Bhi01G000263	Wax gourd	wgowmB204

The following gene(s) are paralogous to this gene:


Gene	Paralogue	Organism	Block
Cla021242	Cla006177	Watermelon (97103) v1	wmwmB118

The following block(s) are covering this gene:


Gene	Organism	Block
Cla021242	Watermelon (Charleston Gray)	wcgwmB286
Cla021242	Cucurbita pepo (Zucchini)	cpewmB845
Cla021242	Cucumber (Gy14) v2	cgybwmB217
Cla021242	Cucurbita maxima (Rimu)	cmawmB798
Cla021242	Cucurbita moschata (Rifu)	cmowmB793